Multiple sequence alignment - TraesCS6D01G328800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G328800 chr6D 100.000 3501 0 0 1 3501 433406950 433410450 0.000000e+00 6466.0
1 TraesCS6D01G328800 chr6B 91.786 2033 69 34 606 2582 654608097 654610087 0.000000e+00 2739.0
2 TraesCS6D01G328800 chr6B 85.487 944 43 39 2587 3488 654611306 654612197 0.000000e+00 898.0
3 TraesCS6D01G328800 chr6A 95.209 1294 33 11 1236 2511 579404792 579406074 0.000000e+00 2019.0
4 TraesCS6D01G328800 chr6A 91.866 627 29 6 606 1230 579403933 579404539 0.000000e+00 856.0
5 TraesCS6D01G328800 chr6A 86.364 440 22 16 2640 3060 579406193 579406613 2.480000e-121 446.0
6 TraesCS6D01G328800 chr6A 84.830 323 42 6 1 320 579403462 579403780 5.640000e-83 318.0
7 TraesCS6D01G328800 chr7B 87.753 841 94 9 1405 2239 61603092 61603929 0.000000e+00 974.0
8 TraesCS6D01G328800 chr7D 87.485 847 93 11 1402 2239 102979868 102980710 0.000000e+00 965.0
9 TraesCS6D01G328800 chr7A 87.116 846 99 10 1401 2239 107869267 107870109 0.000000e+00 950.0
10 TraesCS6D01G328800 chr2B 92.366 131 9 1 1572 1701 676743705 676743835 5.970000e-43 185.0
11 TraesCS6D01G328800 chr5A 87.218 133 17 0 1958 2090 34983834 34983702 6.050000e-33 152.0
12 TraesCS6D01G328800 chr5A 88.991 109 12 0 1565 1673 34983936 34983828 6.100000e-28 135.0
13 TraesCS6D01G328800 chr1D 88.182 110 11 2 1565 1673 394468581 394468689 2.840000e-26 130.0
14 TraesCS6D01G328800 chr1D 98.182 55 1 0 1958 2012 394468683 394468737 2.880000e-16 97.1
15 TraesCS6D01G328800 chr4B 75.141 177 28 14 2040 2205 37173690 37173519 6.270000e-08 69.4
16 TraesCS6D01G328800 chr4A 74.713 174 34 10 2040 2205 578234357 578234528 6.270000e-08 69.4
17 TraesCS6D01G328800 chr4D 92.683 41 0 3 2040 2077 25193719 25193679 4.880000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G328800 chr6D 433406950 433410450 3500 False 6466.00 6466 100.00000 1 3501 1 chr6D.!!$F1 3500
1 TraesCS6D01G328800 chr6B 654608097 654612197 4100 False 1818.50 2739 88.63650 606 3488 2 chr6B.!!$F1 2882
2 TraesCS6D01G328800 chr6A 579403462 579406613 3151 False 909.75 2019 89.56725 1 3060 4 chr6A.!!$F1 3059
3 TraesCS6D01G328800 chr7B 61603092 61603929 837 False 974.00 974 87.75300 1405 2239 1 chr7B.!!$F1 834
4 TraesCS6D01G328800 chr7D 102979868 102980710 842 False 965.00 965 87.48500 1402 2239 1 chr7D.!!$F1 837
5 TraesCS6D01G328800 chr7A 107869267 107870109 842 False 950.00 950 87.11600 1401 2239 1 chr7A.!!$F1 838

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
573 578 0.108138 GGTAGAGATGTGGCGTGCTT 60.108 55.0 0.0 0.0 0.0 3.91 F
598 603 0.111061 TCTGCCCAAGTGAATGCTGT 59.889 50.0 0.0 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2499 2813 5.963214 TCCTCCTCAGAATCATCATTTGA 57.037 39.13 0.0 0.0 39.12 2.69 R
2596 4158 0.036671 CAGAGCAGAGCACATCACCA 60.037 55.00 0.0 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.600062 ACTATTTGGGGAGGATTGTTGTC 58.400 43.478 0.00 0.00 0.00 3.18
58 59 4.484872 GGGTAGGAAGGTGGCCGC 62.485 72.222 8.12 8.12 0.00 6.53
59 60 4.484872 GGTAGGAAGGTGGCCGCC 62.485 72.222 28.88 28.88 0.00 6.13
60 61 4.484872 GTAGGAAGGTGGCCGCCC 62.485 72.222 32.01 17.72 0.00 6.13
89 91 6.151144 GCTCAGGTAGAATTTCCTAAAAGCAA 59.849 38.462 14.24 0.00 35.28 3.91
92 94 5.093457 GGTAGAATTTCCTAAAAGCAACGC 58.907 41.667 0.00 0.00 0.00 4.84
118 121 3.955887 GTCGAAAACGACATGACTCTC 57.044 47.619 16.00 0.00 38.62 3.20
122 125 3.390135 GAAAACGACATGACTCTCCACA 58.610 45.455 0.00 0.00 0.00 4.17
151 154 5.823209 TCATGCACTCAAGTTAATGATGG 57.177 39.130 0.00 0.00 0.00 3.51
154 157 2.754552 GCACTCAAGTTAATGATGGGCA 59.245 45.455 0.00 0.00 31.45 5.36
166 169 5.945466 AATGATGGGCAACAAAACAAATC 57.055 34.783 0.00 0.00 39.74 2.17
169 172 5.374921 TGATGGGCAACAAAACAAATCAAT 58.625 33.333 0.00 0.00 39.74 2.57
174 177 5.163571 GGGCAACAAAACAAATCAATGGTTT 60.164 36.000 0.00 0.00 40.75 3.27
176 179 7.255416 GGGCAACAAAACAAATCAATGGTTTAT 60.255 33.333 0.00 0.00 38.12 1.40
189 192 6.836953 TCAATGGTTTATACAATCACACGTG 58.163 36.000 15.48 15.48 0.00 4.49
190 193 4.671880 TGGTTTATACAATCACACGTGC 57.328 40.909 17.22 0.00 0.00 5.34
195 198 2.647529 TACAATCACACGTGCGAGAT 57.352 45.000 17.22 13.80 0.00 2.75
198 201 2.548057 ACAATCACACGTGCGAGATTTT 59.452 40.909 21.59 15.90 0.00 1.82
200 203 4.212425 ACAATCACACGTGCGAGATTTTAA 59.788 37.500 21.59 0.00 0.00 1.52
201 204 5.106712 ACAATCACACGTGCGAGATTTTAAT 60.107 36.000 21.59 10.29 0.00 1.40
202 205 4.320667 TCACACGTGCGAGATTTTAATG 57.679 40.909 17.22 1.45 0.00 1.90
204 207 2.159572 ACACGTGCGAGATTTTAATGCC 60.160 45.455 17.22 0.00 0.00 4.40
205 208 2.080693 ACGTGCGAGATTTTAATGCCA 58.919 42.857 0.00 0.00 0.00 4.92
206 209 2.682856 ACGTGCGAGATTTTAATGCCAT 59.317 40.909 0.00 0.00 0.00 4.40
207 210 3.038017 CGTGCGAGATTTTAATGCCATG 58.962 45.455 0.00 0.00 0.00 3.66
208 211 3.487376 CGTGCGAGATTTTAATGCCATGT 60.487 43.478 0.00 0.00 0.00 3.21
212 215 4.438608 GCGAGATTTTAATGCCATGTGACA 60.439 41.667 0.00 0.00 0.00 3.58
226 229 4.367450 CATGTGACAAAACAAATTCCCGT 58.633 39.130 0.00 0.00 32.81 5.28
247 250 0.459585 AACGGTCGATACAAGCGCAT 60.460 50.000 11.47 0.00 41.07 4.73
249 252 1.276844 GGTCGATACAAGCGCATGC 59.723 57.895 13.36 7.91 43.24 4.06
252 255 0.460109 TCGATACAAGCGCATGCACT 60.460 50.000 19.57 11.06 46.23 4.40
255 258 1.378882 ATACAAGCGCATGCACTGGG 61.379 55.000 19.57 11.88 46.23 4.45
257 260 2.282391 AAGCGCATGCACTGGGAA 60.282 55.556 19.57 0.00 46.23 3.97
261 264 0.390209 GCGCATGCACTGGGAAAATT 60.390 50.000 19.57 0.00 40.13 1.82
262 265 1.940752 GCGCATGCACTGGGAAAATTT 60.941 47.619 19.57 0.00 40.13 1.82
263 266 2.673610 GCGCATGCACTGGGAAAATTTA 60.674 45.455 19.57 0.00 40.13 1.40
264 267 3.784338 CGCATGCACTGGGAAAATTTAT 58.216 40.909 19.57 0.00 40.13 1.40
265 268 3.552699 CGCATGCACTGGGAAAATTTATG 59.447 43.478 19.57 0.00 40.13 1.90
266 269 3.310501 GCATGCACTGGGAAAATTTATGC 59.689 43.478 14.21 0.00 32.78 3.14
269 272 4.965814 TGCACTGGGAAAATTTATGCAAA 58.034 34.783 0.00 0.00 38.56 3.68
270 273 4.754114 TGCACTGGGAAAATTTATGCAAAC 59.246 37.500 0.00 0.00 38.56 2.93
271 274 4.143137 GCACTGGGAAAATTTATGCAAACG 60.143 41.667 0.00 0.00 0.00 3.60
272 275 4.388469 CACTGGGAAAATTTATGCAAACGG 59.612 41.667 0.00 0.00 0.00 4.44
275 278 4.282195 TGGGAAAATTTATGCAAACGGTCT 59.718 37.500 0.00 0.00 0.00 3.85
276 279 5.221541 TGGGAAAATTTATGCAAACGGTCTT 60.222 36.000 0.00 0.00 0.00 3.01
278 281 6.309494 GGGAAAATTTATGCAAACGGTCTTAC 59.691 38.462 0.00 0.00 0.00 2.34
279 282 6.864165 GGAAAATTTATGCAAACGGTCTTACA 59.136 34.615 0.00 0.00 0.00 2.41
280 283 7.382759 GGAAAATTTATGCAAACGGTCTTACAA 59.617 33.333 0.00 0.00 0.00 2.41
281 284 7.631915 AAATTTATGCAAACGGTCTTACAAC 57.368 32.000 0.00 0.00 0.00 3.32
300 303 2.047002 CGGAAATCGTAAATGGGGGT 57.953 50.000 0.00 0.00 0.00 4.95
301 304 1.673920 CGGAAATCGTAAATGGGGGTG 59.326 52.381 0.00 0.00 0.00 4.61
304 307 2.891191 AATCGTAAATGGGGGTGTGT 57.109 45.000 0.00 0.00 0.00 3.72
307 310 1.067000 TCGTAAATGGGGGTGTGTACG 60.067 52.381 0.00 0.00 36.54 3.67
311 314 2.132089 AATGGGGGTGTGTACGTGGG 62.132 60.000 0.00 0.00 0.00 4.61
320 323 1.337074 TGTGTACGTGGGAATTCCGTC 60.337 52.381 18.30 12.10 38.76 4.79
321 324 0.967662 TGTACGTGGGAATTCCGTCA 59.032 50.000 18.30 8.80 38.76 4.35
322 325 1.067425 TGTACGTGGGAATTCCGTCAG 60.067 52.381 18.30 11.54 38.76 3.51
324 327 0.395312 ACGTGGGAATTCCGTCAGTT 59.605 50.000 18.30 0.00 38.76 3.16
325 328 1.202722 ACGTGGGAATTCCGTCAGTTT 60.203 47.619 18.30 0.00 38.76 2.66
326 329 1.196808 CGTGGGAATTCCGTCAGTTTG 59.803 52.381 18.30 0.00 38.76 2.93
327 330 2.500229 GTGGGAATTCCGTCAGTTTGA 58.500 47.619 18.30 0.00 38.76 2.69
331 334 4.202070 TGGGAATTCCGTCAGTTTGAAAAC 60.202 41.667 18.30 0.00 38.76 2.43
332 335 4.202070 GGGAATTCCGTCAGTTTGAAAACA 60.202 41.667 18.30 0.00 37.91 2.83
333 336 5.508994 GGGAATTCCGTCAGTTTGAAAACAT 60.509 40.000 18.30 0.00 37.91 2.71
336 339 4.545823 TCCGTCAGTTTGAAAACATGAC 57.454 40.909 18.46 18.46 41.30 3.06
337 340 4.196193 TCCGTCAGTTTGAAAACATGACT 58.804 39.130 22.01 0.00 40.63 3.41
342 345 7.647715 CCGTCAGTTTGAAAACATGACTTTTAT 59.352 33.333 22.01 0.00 40.63 1.40
349 352 4.976224 AAACATGACTTTTATACCCCGC 57.024 40.909 0.00 0.00 0.00 6.13
353 356 1.554160 TGACTTTTATACCCCGCCGAA 59.446 47.619 0.00 0.00 0.00 4.30
374 377 5.389516 CGAAGGAGTATAAAATATGCACCGC 60.390 44.000 0.00 0.00 0.00 5.68
375 378 4.968259 AGGAGTATAAAATATGCACCGCA 58.032 39.130 0.00 0.00 44.86 5.69
377 380 4.513692 GGAGTATAAAATATGCACCGCACA 59.486 41.667 0.00 0.00 43.04 4.57
378 381 5.181245 GGAGTATAAAATATGCACCGCACAT 59.819 40.000 0.00 0.00 43.04 3.21
379 382 6.293955 GGAGTATAAAATATGCACCGCACATT 60.294 38.462 0.00 0.00 43.04 2.71
380 383 7.094975 GGAGTATAAAATATGCACCGCACATTA 60.095 37.037 0.00 0.00 43.04 1.90
381 384 8.160521 AGTATAAAATATGCACCGCACATTAA 57.839 30.769 0.00 0.00 43.04 1.40
382 385 8.625651 AGTATAAAATATGCACCGCACATTAAA 58.374 29.630 0.00 0.00 43.04 1.52
383 386 9.239002 GTATAAAATATGCACCGCACATTAAAA 57.761 29.630 0.00 0.00 43.04 1.52
384 387 8.709386 ATAAAATATGCACCGCACATTAAAAA 57.291 26.923 0.00 0.00 43.04 1.94
403 406 3.535280 AAAAGGTCGGTGTTTTTGCAT 57.465 38.095 0.00 0.00 0.00 3.96
405 408 1.686355 AGGTCGGTGTTTTTGCATGA 58.314 45.000 0.00 0.00 0.00 3.07
410 413 3.425193 GTCGGTGTTTTTGCATGACAATC 59.575 43.478 0.00 0.00 38.31 2.67
414 417 5.863397 CGGTGTTTTTGCATGACAATCTTAT 59.137 36.000 0.00 0.00 38.31 1.73
426 429 7.063544 GCATGACAATCTTATAGGATAACCGTC 59.936 40.741 0.00 4.33 41.83 4.79
427 430 7.591421 TGACAATCTTATAGGATAACCGTCA 57.409 36.000 11.79 11.79 41.83 4.35
436 439 4.222124 AGGATAACCGTCAGCTCATTTT 57.778 40.909 0.00 0.00 41.83 1.82
437 440 4.192317 AGGATAACCGTCAGCTCATTTTC 58.808 43.478 0.00 0.00 41.83 2.29
439 442 4.034510 GGATAACCGTCAGCTCATTTTCTG 59.965 45.833 0.00 0.00 0.00 3.02
440 443 2.839486 ACCGTCAGCTCATTTTCTGA 57.161 45.000 0.00 0.00 37.03 3.27
441 444 3.126001 ACCGTCAGCTCATTTTCTGAA 57.874 42.857 0.00 0.00 40.57 3.02
460 465 4.613944 TGAAAGAAACACGATACAGACGT 58.386 39.130 0.00 0.00 44.83 4.34
465 470 3.380486 AACACGATACAGACGTAGACG 57.620 47.619 0.00 0.00 42.07 4.18
468 473 2.005451 ACGATACAGACGTAGACGCTT 58.995 47.619 1.14 0.00 44.43 4.68
472 477 4.605793 CGATACAGACGTAGACGCTTACTC 60.606 50.000 1.14 0.00 44.43 2.59
477 482 3.679980 AGACGTAGACGCTTACTCGTTTA 59.320 43.478 1.14 0.00 43.42 2.01
481 486 4.490191 CGTAGACGCTTACTCGTTTAGAAC 59.510 45.833 0.00 0.00 43.42 3.01
485 490 6.026513 AGACGCTTACTCGTTTAGAACATAC 58.973 40.000 0.00 0.00 43.42 2.39
486 491 5.947443 ACGCTTACTCGTTTAGAACATACT 58.053 37.500 0.00 0.00 40.07 2.12
487 492 7.065085 AGACGCTTACTCGTTTAGAACATACTA 59.935 37.037 0.00 0.00 43.42 1.82
488 493 6.963805 ACGCTTACTCGTTTAGAACATACTAC 59.036 38.462 0.00 0.00 40.07 2.73
489 494 7.148340 ACGCTTACTCGTTTAGAACATACTACT 60.148 37.037 0.00 0.00 40.07 2.57
490 495 7.372918 CGCTTACTCGTTTAGAACATACTACTC 59.627 40.741 0.00 0.00 0.00 2.59
491 496 7.643371 GCTTACTCGTTTAGAACATACTACTCC 59.357 40.741 0.00 0.00 0.00 3.85
492 497 6.448207 ACTCGTTTAGAACATACTACTCCC 57.552 41.667 0.00 0.00 0.00 4.30
494 499 6.662663 ACTCGTTTAGAACATACTACTCCCTT 59.337 38.462 0.00 0.00 0.00 3.95
496 501 7.318141 TCGTTTAGAACATACTACTCCCTTTG 58.682 38.462 0.00 0.00 0.00 2.77
497 502 7.177216 TCGTTTAGAACATACTACTCCCTTTGA 59.823 37.037 0.00 0.00 0.00 2.69
498 503 7.980099 CGTTTAGAACATACTACTCCCTTTGAT 59.020 37.037 0.00 0.00 0.00 2.57
499 504 9.315525 GTTTAGAACATACTACTCCCTTTGATC 57.684 37.037 0.00 0.00 0.00 2.92
500 505 6.487299 AGAACATACTACTCCCTTTGATCC 57.513 41.667 0.00 0.00 0.00 3.36
501 506 5.964477 AGAACATACTACTCCCTTTGATCCA 59.036 40.000 0.00 0.00 0.00 3.41
502 507 6.443849 AGAACATACTACTCCCTTTGATCCAA 59.556 38.462 0.00 0.00 0.00 3.53
503 508 6.636454 ACATACTACTCCCTTTGATCCAAA 57.364 37.500 0.00 0.00 0.00 3.28
504 509 6.415573 ACATACTACTCCCTTTGATCCAAAC 58.584 40.000 0.00 0.00 0.00 2.93
505 510 6.215636 ACATACTACTCCCTTTGATCCAAACT 59.784 38.462 0.00 0.00 0.00 2.66
506 511 7.402071 ACATACTACTCCCTTTGATCCAAACTA 59.598 37.037 0.00 0.00 0.00 2.24
507 512 6.697641 ACTACTCCCTTTGATCCAAACTAA 57.302 37.500 0.00 0.00 0.00 2.24
508 513 7.086685 ACTACTCCCTTTGATCCAAACTAAA 57.913 36.000 0.00 0.00 0.00 1.85
509 514 7.699878 ACTACTCCCTTTGATCCAAACTAAAT 58.300 34.615 0.00 0.00 0.00 1.40
510 515 6.840780 ACTCCCTTTGATCCAAACTAAATG 57.159 37.500 0.00 0.00 0.00 2.32
511 516 6.552008 ACTCCCTTTGATCCAAACTAAATGA 58.448 36.000 0.00 0.00 0.00 2.57
512 517 6.434340 ACTCCCTTTGATCCAAACTAAATGAC 59.566 38.462 0.00 0.00 0.00 3.06
513 518 6.310941 TCCCTTTGATCCAAACTAAATGACA 58.689 36.000 0.00 0.00 0.00 3.58
514 519 6.208599 TCCCTTTGATCCAAACTAAATGACAC 59.791 38.462 0.00 0.00 0.00 3.67
515 520 6.015519 CCCTTTGATCCAAACTAAATGACACA 60.016 38.462 0.00 0.00 0.00 3.72
516 521 7.086376 CCTTTGATCCAAACTAAATGACACAG 58.914 38.462 0.00 0.00 0.00 3.66
517 522 6.573664 TTGATCCAAACTAAATGACACAGG 57.426 37.500 0.00 0.00 0.00 4.00
518 523 5.875224 TGATCCAAACTAAATGACACAGGA 58.125 37.500 0.00 0.00 0.00 3.86
519 524 5.939883 TGATCCAAACTAAATGACACAGGAG 59.060 40.000 0.00 0.00 0.00 3.69
520 525 4.651778 TCCAAACTAAATGACACAGGAGG 58.348 43.478 0.00 0.00 0.00 4.30
521 526 3.758554 CCAAACTAAATGACACAGGAGGG 59.241 47.826 0.00 0.00 0.00 4.30
522 527 4.506625 CCAAACTAAATGACACAGGAGGGA 60.507 45.833 0.00 0.00 0.00 4.20
523 528 4.559862 AACTAAATGACACAGGAGGGAG 57.440 45.455 0.00 0.00 0.00 4.30
524 529 3.521727 ACTAAATGACACAGGAGGGAGT 58.478 45.455 0.00 0.00 0.00 3.85
525 530 4.684724 ACTAAATGACACAGGAGGGAGTA 58.315 43.478 0.00 0.00 0.00 2.59
526 531 5.281314 ACTAAATGACACAGGAGGGAGTAT 58.719 41.667 0.00 0.00 0.00 2.12
527 532 4.494091 AAATGACACAGGAGGGAGTATG 57.506 45.455 0.00 0.00 0.00 2.39
528 533 2.919772 TGACACAGGAGGGAGTATGA 57.080 50.000 0.00 0.00 0.00 2.15
529 534 3.184382 TGACACAGGAGGGAGTATGAA 57.816 47.619 0.00 0.00 0.00 2.57
530 535 3.724478 TGACACAGGAGGGAGTATGAAT 58.276 45.455 0.00 0.00 0.00 2.57
531 536 4.104086 TGACACAGGAGGGAGTATGAATT 58.896 43.478 0.00 0.00 0.00 2.17
532 537 4.536090 TGACACAGGAGGGAGTATGAATTT 59.464 41.667 0.00 0.00 0.00 1.82
533 538 5.104259 ACACAGGAGGGAGTATGAATTTC 57.896 43.478 0.00 0.00 0.00 2.17
534 539 4.080299 ACACAGGAGGGAGTATGAATTTCC 60.080 45.833 0.00 0.00 0.00 3.13
535 540 4.164988 CACAGGAGGGAGTATGAATTTCCT 59.835 45.833 0.00 0.00 34.03 3.36
536 541 4.410555 ACAGGAGGGAGTATGAATTTCCTC 59.589 45.833 0.00 0.00 39.84 3.71
537 542 4.410228 CAGGAGGGAGTATGAATTTCCTCA 59.590 45.833 9.06 0.00 41.70 3.86
538 543 5.072872 CAGGAGGGAGTATGAATTTCCTCAT 59.927 44.000 9.06 0.00 41.70 2.90
539 544 5.674035 AGGAGGGAGTATGAATTTCCTCATT 59.326 40.000 9.06 0.00 41.70 2.57
540 545 5.767168 GGAGGGAGTATGAATTTCCTCATTG 59.233 44.000 9.06 0.00 41.70 2.82
541 546 6.332976 AGGGAGTATGAATTTCCTCATTGT 57.667 37.500 0.00 0.00 37.27 2.71
542 547 6.735556 AGGGAGTATGAATTTCCTCATTGTT 58.264 36.000 0.00 0.00 37.27 2.83
543 548 7.872138 AGGGAGTATGAATTTCCTCATTGTTA 58.128 34.615 0.00 0.00 37.27 2.41
544 549 8.506083 AGGGAGTATGAATTTCCTCATTGTTAT 58.494 33.333 0.00 0.00 37.27 1.89
545 550 8.571336 GGGAGTATGAATTTCCTCATTGTTATG 58.429 37.037 0.00 0.00 37.27 1.90
546 551 9.125026 GGAGTATGAATTTCCTCATTGTTATGT 57.875 33.333 0.00 0.00 37.27 2.29
547 552 9.941664 GAGTATGAATTTCCTCATTGTTATGTG 57.058 33.333 0.00 0.00 37.27 3.21
548 553 9.466497 AGTATGAATTTCCTCATTGTTATGTGT 57.534 29.630 0.00 0.00 37.27 3.72
549 554 9.722056 GTATGAATTTCCTCATTGTTATGTGTC 57.278 33.333 0.00 0.00 37.27 3.67
550 555 7.757941 TGAATTTCCTCATTGTTATGTGTCA 57.242 32.000 0.00 0.00 33.34 3.58
551 556 7.592938 TGAATTTCCTCATTGTTATGTGTCAC 58.407 34.615 0.00 0.00 33.34 3.67
552 557 7.230309 TGAATTTCCTCATTGTTATGTGTCACA 59.770 33.333 8.40 8.40 33.34 3.58
553 558 7.707624 ATTTCCTCATTGTTATGTGTCACAT 57.292 32.000 21.70 21.70 42.35 3.21
554 559 6.499234 TTCCTCATTGTTATGTGTCACATG 57.501 37.500 25.63 11.50 39.53 3.21
555 560 4.943093 TCCTCATTGTTATGTGTCACATGG 59.057 41.667 25.63 16.14 39.53 3.66
556 561 4.701651 CCTCATTGTTATGTGTCACATGGT 59.298 41.667 25.63 5.80 39.53 3.55
557 562 5.879777 CCTCATTGTTATGTGTCACATGGTA 59.120 40.000 25.63 10.42 39.53 3.25
558 563 6.037500 CCTCATTGTTATGTGTCACATGGTAG 59.962 42.308 25.63 13.35 39.53 3.18
559 564 6.706295 TCATTGTTATGTGTCACATGGTAGA 58.294 36.000 25.63 13.79 39.53 2.59
560 565 6.818142 TCATTGTTATGTGTCACATGGTAGAG 59.182 38.462 25.63 12.91 39.53 2.43
561 566 5.993748 TGTTATGTGTCACATGGTAGAGA 57.006 39.130 25.63 3.65 39.53 3.10
562 567 6.544928 TGTTATGTGTCACATGGTAGAGAT 57.455 37.500 25.63 2.20 39.53 2.75
563 568 6.340522 TGTTATGTGTCACATGGTAGAGATG 58.659 40.000 25.63 0.00 39.53 2.90
564 569 6.070824 TGTTATGTGTCACATGGTAGAGATGT 60.071 38.462 25.63 0.98 39.53 3.06
568 573 1.575244 CACATGGTAGAGATGTGGCG 58.425 55.000 0.00 0.00 44.68 5.69
569 574 1.134699 CACATGGTAGAGATGTGGCGT 60.135 52.381 0.00 0.00 44.68 5.68
570 575 1.134699 ACATGGTAGAGATGTGGCGTG 60.135 52.381 0.00 0.00 32.68 5.34
571 576 0.179073 ATGGTAGAGATGTGGCGTGC 60.179 55.000 0.00 0.00 0.00 5.34
572 577 1.257750 TGGTAGAGATGTGGCGTGCT 61.258 55.000 0.00 0.00 0.00 4.40
573 578 0.108138 GGTAGAGATGTGGCGTGCTT 60.108 55.000 0.00 0.00 0.00 3.91
574 579 1.676014 GGTAGAGATGTGGCGTGCTTT 60.676 52.381 0.00 0.00 0.00 3.51
575 580 1.394917 GTAGAGATGTGGCGTGCTTTG 59.605 52.381 0.00 0.00 0.00 2.77
576 581 0.957395 AGAGATGTGGCGTGCTTTGG 60.957 55.000 0.00 0.00 0.00 3.28
577 582 0.955428 GAGATGTGGCGTGCTTTGGA 60.955 55.000 0.00 0.00 0.00 3.53
578 583 1.210155 GATGTGGCGTGCTTTGGAC 59.790 57.895 0.00 0.00 0.00 4.02
579 584 1.228245 ATGTGGCGTGCTTTGGACT 60.228 52.632 0.00 0.00 0.00 3.85
580 585 1.237285 ATGTGGCGTGCTTTGGACTC 61.237 55.000 0.00 0.00 0.00 3.36
581 586 1.598130 GTGGCGTGCTTTGGACTCT 60.598 57.895 0.00 0.00 0.00 3.24
582 587 1.597854 TGGCGTGCTTTGGACTCTG 60.598 57.895 0.00 0.00 0.00 3.35
583 588 2.558313 GCGTGCTTTGGACTCTGC 59.442 61.111 0.00 0.00 0.00 4.26
584 589 2.970974 GCGTGCTTTGGACTCTGCC 61.971 63.158 0.00 0.00 0.00 4.85
585 590 2.328099 CGTGCTTTGGACTCTGCCC 61.328 63.158 0.00 0.00 0.00 5.36
586 591 1.228245 GTGCTTTGGACTCTGCCCA 60.228 57.895 0.00 0.00 0.00 5.36
587 592 0.823356 GTGCTTTGGACTCTGCCCAA 60.823 55.000 0.00 0.00 41.53 4.12
588 593 0.538057 TGCTTTGGACTCTGCCCAAG 60.538 55.000 0.00 0.00 43.72 3.61
589 594 0.538287 GCTTTGGACTCTGCCCAAGT 60.538 55.000 0.00 0.00 43.72 3.16
590 595 1.242076 CTTTGGACTCTGCCCAAGTG 58.758 55.000 0.00 0.00 43.72 3.16
591 596 0.843309 TTTGGACTCTGCCCAAGTGA 59.157 50.000 0.00 0.00 43.72 3.41
592 597 0.843309 TTGGACTCTGCCCAAGTGAA 59.157 50.000 0.00 0.00 38.64 3.18
593 598 1.067295 TGGACTCTGCCCAAGTGAAT 58.933 50.000 0.00 0.00 0.00 2.57
594 599 1.271543 TGGACTCTGCCCAAGTGAATG 60.272 52.381 0.00 0.00 0.00 2.67
595 600 0.807496 GACTCTGCCCAAGTGAATGC 59.193 55.000 0.00 0.00 0.00 3.56
596 601 0.403271 ACTCTGCCCAAGTGAATGCT 59.597 50.000 0.00 0.00 0.00 3.79
597 602 0.809385 CTCTGCCCAAGTGAATGCTG 59.191 55.000 0.00 0.00 0.00 4.41
598 603 0.111061 TCTGCCCAAGTGAATGCTGT 59.889 50.000 0.00 0.00 0.00 4.40
599 604 0.524862 CTGCCCAAGTGAATGCTGTC 59.475 55.000 0.00 0.00 0.00 3.51
600 605 0.178995 TGCCCAAGTGAATGCTGTCA 60.179 50.000 0.00 0.00 0.00 3.58
601 606 0.242017 GCCCAAGTGAATGCTGTCAC 59.758 55.000 11.15 11.15 46.90 3.67
637 643 1.397945 CCGTTGTTATGTGTCACGTGC 60.398 52.381 11.67 6.86 0.00 5.34
645 651 3.592898 ATGTGTCACGTGCAAGAGATA 57.407 42.857 11.67 0.00 0.00 1.98
763 776 3.027170 GATGCAACGGACACGGCAG 62.027 63.158 0.00 0.00 46.48 4.85
896 909 3.558411 GCGTCACGGCTGCATCTC 61.558 66.667 0.00 0.00 0.00 2.75
897 910 2.887568 CGTCACGGCTGCATCTCC 60.888 66.667 0.50 0.00 0.00 3.71
960 988 3.412408 GTCCCTTGGCCTCCCTCC 61.412 72.222 3.32 0.00 0.00 4.30
1068 1096 2.021457 TCTCTCATACGACGGCAATCA 58.979 47.619 0.00 0.00 0.00 2.57
2471 2785 6.855403 GCTCAAGCTTTTCTTTAGTTTCTCTG 59.145 38.462 0.00 0.00 38.21 3.35
2472 2786 7.467947 GCTCAAGCTTTTCTTTAGTTTCTCTGT 60.468 37.037 0.00 0.00 38.21 3.41
2473 2787 8.281212 TCAAGCTTTTCTTTAGTTTCTCTGTT 57.719 30.769 0.00 0.00 31.27 3.16
2474 2788 9.391006 TCAAGCTTTTCTTTAGTTTCTCTGTTA 57.609 29.630 0.00 0.00 31.27 2.41
2511 2825 7.713734 ATGTTGTCTCCTTCAAATGATGATT 57.286 32.000 0.00 0.00 38.03 2.57
2512 2826 7.149569 TGTTGTCTCCTTCAAATGATGATTC 57.850 36.000 0.00 0.00 38.03 2.52
2516 2863 6.822170 TGTCTCCTTCAAATGATGATTCTGAG 59.178 38.462 0.00 0.00 38.03 3.35
2519 2866 6.354938 TCCTTCAAATGATGATTCTGAGGAG 58.645 40.000 0.00 0.00 38.03 3.69
2528 2875 5.605488 TGATGATTCTGAGGAGGATGATGAA 59.395 40.000 0.00 0.00 0.00 2.57
2541 2888 9.741198 AGGAGGATGATGAAGATATAATATGGT 57.259 33.333 0.00 0.00 0.00 3.55
2575 2923 4.749598 ACCAATTTCTTGTTCCAAATTCGC 59.250 37.500 0.00 0.00 31.22 4.70
2582 2930 2.927429 TGTTCCAAATTCGCAACATCG 58.073 42.857 0.00 0.00 0.00 3.84
2584 2932 2.892373 TCCAAATTCGCAACATCGTC 57.108 45.000 0.00 0.00 0.00 4.20
2594 4156 2.029288 AACATCGTCACAGCAGGCG 61.029 57.895 0.00 0.00 0.00 5.52
2596 4158 3.695606 ATCGTCACAGCAGGCGGT 61.696 61.111 0.00 0.00 0.00 5.68
2619 4181 0.810823 GATGTGCTCTGCTCTGCTCC 60.811 60.000 0.00 0.00 0.00 4.70
2629 4191 0.464735 GCTCTGCTCCTCTCGGTAGA 60.465 60.000 0.00 0.00 0.00 2.59
2722 4291 6.040391 ACCACCATGGATATAAAAATGGAACG 59.960 38.462 21.47 0.00 40.96 3.95
2779 4364 1.449246 CGGAGCCCTCTCTTGCTTG 60.449 63.158 0.00 0.00 38.11 4.01
2822 4407 2.671177 CGAATCGCATCGGGCATCC 61.671 63.158 0.00 0.00 45.17 3.51
2861 4446 2.403252 AAAAGATGGGTGCTCCTACG 57.597 50.000 4.53 0.00 36.20 3.51
2862 4447 0.107654 AAAGATGGGTGCTCCTACGC 60.108 55.000 4.53 0.00 36.20 4.42
2863 4448 0.978146 AAGATGGGTGCTCCTACGCT 60.978 55.000 4.53 0.00 36.20 5.07
2864 4449 0.106167 AGATGGGTGCTCCTACGCTA 60.106 55.000 4.53 0.00 36.20 4.26
2865 4450 0.315568 GATGGGTGCTCCTACGCTAG 59.684 60.000 4.53 0.00 36.20 3.42
2880 4470 1.528129 GCTAGTAGCAATGGCCATCC 58.472 55.000 21.08 13.45 41.89 3.51
2997 4591 0.832135 TCCTCCCTCGCTTGTCAGTT 60.832 55.000 0.00 0.00 0.00 3.16
3019 4613 1.610673 TTGCGCCCTCTCCTCTCTT 60.611 57.895 4.18 0.00 0.00 2.85
3042 4636 0.479378 TTTTGTTTCGGGCCCTACCT 59.521 50.000 22.43 0.00 39.10 3.08
3043 4637 1.360185 TTTGTTTCGGGCCCTACCTA 58.640 50.000 22.43 0.00 39.10 3.08
3044 4638 0.614812 TTGTTTCGGGCCCTACCTAC 59.385 55.000 22.43 11.05 39.10 3.18
3045 4639 0.544833 TGTTTCGGGCCCTACCTACA 60.545 55.000 22.43 13.59 39.10 2.74
3048 4642 3.534056 CGGGCCCTACCTACACGG 61.534 72.222 22.43 0.00 39.10 4.94
3060 4654 1.086696 CTACACGGTGGCTTTGGATG 58.913 55.000 13.48 0.00 0.00 3.51
3061 4655 0.958382 TACACGGTGGCTTTGGATGC 60.958 55.000 13.48 0.00 0.00 3.91
3131 4727 3.251004 GCTAATTCGCCATGGGAGTAAAG 59.749 47.826 15.13 8.30 0.00 1.85
3170 4770 3.141488 CGAGAGAGGGACCCGTGG 61.141 72.222 4.40 0.00 0.00 4.94
3181 4781 0.250989 GACCCGTGGTTGGAATGGAA 60.251 55.000 0.00 0.00 35.25 3.53
3182 4782 0.407918 ACCCGTGGTTGGAATGGAAT 59.592 50.000 0.00 0.00 27.29 3.01
3183 4783 0.817013 CCCGTGGTTGGAATGGAATG 59.183 55.000 0.00 0.00 0.00 2.67
3184 4784 0.817013 CCGTGGTTGGAATGGAATGG 59.183 55.000 0.00 0.00 0.00 3.16
3185 4785 1.615651 CCGTGGTTGGAATGGAATGGA 60.616 52.381 0.00 0.00 0.00 3.41
3186 4786 2.166829 CGTGGTTGGAATGGAATGGAA 58.833 47.619 0.00 0.00 0.00 3.53
3187 4787 2.760092 CGTGGTTGGAATGGAATGGAAT 59.240 45.455 0.00 0.00 0.00 3.01
3188 4788 3.429272 CGTGGTTGGAATGGAATGGAATG 60.429 47.826 0.00 0.00 0.00 2.67
3189 4789 3.106054 TGGTTGGAATGGAATGGAATGG 58.894 45.455 0.00 0.00 0.00 3.16
3190 4790 3.245911 TGGTTGGAATGGAATGGAATGGA 60.246 43.478 0.00 0.00 0.00 3.41
3262 4862 1.227263 GAGGCGAGCGCTCCATTAA 60.227 57.895 30.66 0.00 41.60 1.40
3309 4909 0.441921 GAGCTTTCTCTCGTGCTTGC 59.558 55.000 0.00 0.00 35.76 4.01
3323 4923 1.870901 CTTGCTCGTACGTACCCGC 60.871 63.158 19.67 20.29 37.70 6.13
3333 4933 4.670606 GTACCCGCTGTACGTACG 57.329 61.111 20.18 15.01 40.44 3.67
3334 4934 1.583709 GTACCCGCTGTACGTACGC 60.584 63.158 23.50 23.50 40.44 4.42
3335 4935 3.094661 TACCCGCTGTACGTACGCG 62.095 63.158 35.57 35.57 43.39 6.01
3348 4948 1.202222 CGTACGCGTCCCATTAACTCT 60.202 52.381 18.63 0.00 0.00 3.24
3349 4949 2.190981 GTACGCGTCCCATTAACTCTG 58.809 52.381 18.63 0.00 0.00 3.35
3351 4951 1.480954 ACGCGTCCCATTAACTCTGAT 59.519 47.619 5.58 0.00 0.00 2.90
3352 4952 1.860950 CGCGTCCCATTAACTCTGATG 59.139 52.381 0.00 0.00 0.00 3.07
3363 4964 0.180642 ACTCTGATGATGGCTGGCAG 59.819 55.000 10.94 10.94 0.00 4.85
3400 5001 5.449177 GGGAATGTGCAAGTAAATAGTGAGC 60.449 44.000 0.00 0.00 0.00 4.26
3424 5025 2.430921 ACGCTTCTTCTCGTGCCG 60.431 61.111 0.00 0.00 37.55 5.69
3429 5030 4.717629 TCTTCTCGTGCCGTGCCG 62.718 66.667 0.00 0.00 0.00 5.69
3470 5081 0.975040 AGACTCCTCGCTCCTGCAAT 60.975 55.000 0.00 0.00 39.64 3.56
3472 5083 0.326264 ACTCCTCGCTCCTGCAATTT 59.674 50.000 0.00 0.00 39.64 1.82
3488 5099 3.122780 GCAATTTAATGGCGTGTTTCACC 59.877 43.478 0.00 0.00 0.00 4.02
3489 5100 4.302455 CAATTTAATGGCGTGTTTCACCA 58.698 39.130 0.00 0.00 37.99 4.17
3490 5101 4.799564 ATTTAATGGCGTGTTTCACCAT 57.200 36.364 0.00 0.00 46.15 3.55
3493 5104 0.602562 ATGGCGTGTTTCACCATTGG 59.397 50.000 0.00 0.00 41.44 3.16
3494 5105 1.372872 GGCGTGTTTCACCATTGGC 60.373 57.895 1.54 0.00 0.00 4.52
3495 5106 1.361993 GCGTGTTTCACCATTGGCA 59.638 52.632 1.54 0.00 0.00 4.92
3496 5107 0.664166 GCGTGTTTCACCATTGGCAG 60.664 55.000 1.54 0.00 0.00 4.85
3497 5108 0.950836 CGTGTTTCACCATTGGCAGA 59.049 50.000 1.54 0.00 0.00 4.26
3498 5109 1.541147 CGTGTTTCACCATTGGCAGAT 59.459 47.619 1.54 0.00 0.00 2.90
3499 5110 2.030007 CGTGTTTCACCATTGGCAGATT 60.030 45.455 1.54 0.00 0.00 2.40
3500 5111 3.319755 GTGTTTCACCATTGGCAGATTG 58.680 45.455 1.54 0.00 0.00 2.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.157120 CGGCCACCTTCCTACCCG 62.157 72.222 2.24 0.00 0.00 5.28
58 59 1.123928 AATTCTACCTGAGCTCGGGG 58.876 55.000 38.61 28.97 46.75 5.73
60 61 2.432510 AGGAAATTCTACCTGAGCTCGG 59.567 50.000 16.14 16.14 34.99 4.63
68 70 5.106277 GCGTTGCTTTTAGGAAATTCTACCT 60.106 40.000 0.00 0.00 39.95 3.08
122 125 7.607607 TCATTAACTTGAGTGCATGAAGTACAT 59.392 33.333 0.00 0.00 40.17 2.29
139 142 5.923204 TGTTTTGTTGCCCATCATTAACTT 58.077 33.333 0.00 0.00 0.00 2.66
151 154 5.497635 AACCATTGATTTGTTTTGTTGCC 57.502 34.783 0.00 0.00 0.00 4.52
166 169 5.511377 GCACGTGTGATTGTATAAACCATTG 59.489 40.000 18.38 0.00 0.00 2.82
169 172 3.123790 CGCACGTGTGATTGTATAAACCA 59.876 43.478 24.50 0.00 0.00 3.67
174 177 3.768468 TCTCGCACGTGTGATTGTATA 57.232 42.857 30.22 8.18 33.67 1.47
176 179 2.647529 ATCTCGCACGTGTGATTGTA 57.352 45.000 30.22 16.94 33.67 2.41
179 182 5.323900 CATTAAAATCTCGCACGTGTGATT 58.676 37.500 30.22 24.05 33.67 2.57
189 192 4.037690 GTCACATGGCATTAAAATCTCGC 58.962 43.478 0.00 0.00 0.00 5.03
190 193 5.233957 TGTCACATGGCATTAAAATCTCG 57.766 39.130 0.00 0.00 0.00 4.04
195 198 7.615582 TTTGTTTTGTCACATGGCATTAAAA 57.384 28.000 0.00 0.00 0.00 1.52
198 201 6.426328 GGAATTTGTTTTGTCACATGGCATTA 59.574 34.615 0.00 0.00 0.00 1.90
200 203 4.756135 GGAATTTGTTTTGTCACATGGCAT 59.244 37.500 0.00 0.00 0.00 4.40
201 204 4.125703 GGAATTTGTTTTGTCACATGGCA 58.874 39.130 0.00 0.00 0.00 4.92
202 205 3.498018 GGGAATTTGTTTTGTCACATGGC 59.502 43.478 0.00 0.00 0.00 4.40
204 207 4.367450 ACGGGAATTTGTTTTGTCACATG 58.633 39.130 0.00 0.00 0.00 3.21
205 208 4.664150 ACGGGAATTTGTTTTGTCACAT 57.336 36.364 0.00 0.00 0.00 3.21
206 209 4.457834 AACGGGAATTTGTTTTGTCACA 57.542 36.364 0.00 0.00 0.00 3.58
207 210 5.052238 CGTTAACGGGAATTTGTTTTGTCAC 60.052 40.000 20.24 0.00 35.37 3.67
208 211 5.035443 CGTTAACGGGAATTTGTTTTGTCA 58.965 37.500 20.24 0.00 35.37 3.58
226 229 1.270971 GCGCTTGTATCGACCGTTAA 58.729 50.000 0.00 0.00 0.00 2.01
232 235 0.315382 GTGCATGCGCTTGTATCGAC 60.315 55.000 23.77 2.76 39.64 4.20
247 250 4.613925 TTGCATAAATTTTCCCAGTGCA 57.386 36.364 0.00 1.96 39.10 4.57
249 252 4.388469 CCGTTTGCATAAATTTTCCCAGTG 59.612 41.667 0.00 0.00 0.00 3.66
252 255 4.282195 AGACCGTTTGCATAAATTTTCCCA 59.718 37.500 0.00 0.00 0.00 4.37
255 258 7.861176 TGTAAGACCGTTTGCATAAATTTTC 57.139 32.000 0.00 0.00 0.00 2.29
257 260 6.361214 CGTTGTAAGACCGTTTGCATAAATTT 59.639 34.615 0.00 0.00 0.00 1.82
261 264 3.186817 CCGTTGTAAGACCGTTTGCATAA 59.813 43.478 0.00 0.00 0.00 1.90
262 265 2.737783 CCGTTGTAAGACCGTTTGCATA 59.262 45.455 0.00 0.00 0.00 3.14
263 266 1.533731 CCGTTGTAAGACCGTTTGCAT 59.466 47.619 0.00 0.00 0.00 3.96
264 267 0.938713 CCGTTGTAAGACCGTTTGCA 59.061 50.000 0.00 0.00 0.00 4.08
265 268 1.219646 TCCGTTGTAAGACCGTTTGC 58.780 50.000 0.00 0.00 0.00 3.68
266 269 3.948196 TTTCCGTTGTAAGACCGTTTG 57.052 42.857 0.00 0.00 0.00 2.93
269 272 2.331194 CGATTTCCGTTGTAAGACCGT 58.669 47.619 0.00 0.00 0.00 4.83
281 284 1.673920 CACCCCCATTTACGATTTCCG 59.326 52.381 0.00 0.00 45.44 4.30
296 299 0.037160 AATTCCCACGTACACACCCC 59.963 55.000 0.00 0.00 0.00 4.95
300 303 0.680618 ACGGAATTCCCACGTACACA 59.319 50.000 19.01 0.00 39.30 3.72
301 304 1.337074 TGACGGAATTCCCACGTACAC 60.337 52.381 19.01 3.00 41.40 2.90
304 307 1.259609 ACTGACGGAATTCCCACGTA 58.740 50.000 19.01 0.62 41.40 3.57
307 310 2.500229 TCAAACTGACGGAATTCCCAC 58.500 47.619 19.01 12.90 34.14 4.61
311 314 6.142320 GTCATGTTTTCAAACTGACGGAATTC 59.858 38.462 14.04 0.00 37.34 2.17
320 323 9.191995 GGGTATAAAAGTCATGTTTTCAAACTG 57.808 33.333 4.14 1.06 39.59 3.16
321 324 8.364894 GGGGTATAAAAGTCATGTTTTCAAACT 58.635 33.333 4.14 0.00 39.59 2.66
322 325 7.327518 CGGGGTATAAAAGTCATGTTTTCAAAC 59.672 37.037 0.00 0.00 39.33 2.93
324 327 6.570764 GCGGGGTATAAAAGTCATGTTTTCAA 60.571 38.462 0.00 0.00 31.96 2.69
325 328 5.106078 GCGGGGTATAAAAGTCATGTTTTCA 60.106 40.000 0.00 0.00 31.96 2.69
326 329 5.337554 GCGGGGTATAAAAGTCATGTTTTC 58.662 41.667 0.00 0.00 31.96 2.29
327 330 4.158949 GGCGGGGTATAAAAGTCATGTTTT 59.841 41.667 0.00 0.00 34.07 2.43
331 334 1.871039 CGGCGGGGTATAAAAGTCATG 59.129 52.381 0.00 0.00 0.00 3.07
332 335 1.764134 TCGGCGGGGTATAAAAGTCAT 59.236 47.619 7.21 0.00 0.00 3.06
333 336 1.193323 TCGGCGGGGTATAAAAGTCA 58.807 50.000 7.21 0.00 0.00 3.41
336 339 1.139455 TCCTTCGGCGGGGTATAAAAG 59.861 52.381 7.21 0.00 0.00 2.27
337 340 1.139455 CTCCTTCGGCGGGGTATAAAA 59.861 52.381 7.21 0.00 0.00 1.52
342 345 0.478072 TATACTCCTTCGGCGGGGTA 59.522 55.000 7.21 1.28 43.83 3.69
349 352 5.120208 CGGTGCATATTTTATACTCCTTCGG 59.880 44.000 0.00 0.00 0.00 4.30
353 356 4.755123 GTGCGGTGCATATTTTATACTCCT 59.245 41.667 0.00 0.00 41.91 3.69
356 359 6.633500 AATGTGCGGTGCATATTTTATACT 57.367 33.333 7.79 0.00 45.38 2.12
357 360 8.789881 TTTAATGTGCGGTGCATATTTTATAC 57.210 30.769 16.89 0.00 45.38 1.47
359 362 8.709386 TTTTTAATGTGCGGTGCATATTTTAT 57.291 26.923 16.89 0.00 45.38 1.40
382 385 3.320673 TGCAAAAACACCGACCTTTTT 57.679 38.095 0.00 0.00 31.20 1.94
383 386 3.118956 TCATGCAAAAACACCGACCTTTT 60.119 39.130 0.00 0.00 0.00 2.27
384 387 2.428890 TCATGCAAAAACACCGACCTTT 59.571 40.909 0.00 0.00 0.00 3.11
385 388 2.028130 TCATGCAAAAACACCGACCTT 58.972 42.857 0.00 0.00 0.00 3.50
386 389 1.336755 GTCATGCAAAAACACCGACCT 59.663 47.619 0.00 0.00 0.00 3.85
387 390 1.066303 TGTCATGCAAAAACACCGACC 59.934 47.619 0.00 0.00 0.00 4.79
388 391 2.483583 TGTCATGCAAAAACACCGAC 57.516 45.000 0.00 0.00 0.00 4.79
389 392 3.317711 AGATTGTCATGCAAAAACACCGA 59.682 39.130 6.65 0.00 40.91 4.69
390 393 3.641648 AGATTGTCATGCAAAAACACCG 58.358 40.909 6.65 0.00 40.91 4.94
391 394 7.489113 CCTATAAGATTGTCATGCAAAAACACC 59.511 37.037 6.65 0.00 40.91 4.16
392 395 8.243426 TCCTATAAGATTGTCATGCAAAAACAC 58.757 33.333 6.65 0.00 40.91 3.32
393 396 8.347004 TCCTATAAGATTGTCATGCAAAAACA 57.653 30.769 6.65 0.00 40.91 2.83
397 400 9.066892 GGTTATCCTATAAGATTGTCATGCAAA 57.933 33.333 6.65 0.00 40.91 3.68
398 401 7.387673 CGGTTATCCTATAAGATTGTCATGCAA 59.612 37.037 0.00 5.27 41.89 4.08
399 402 6.873605 CGGTTATCCTATAAGATTGTCATGCA 59.126 38.462 0.00 0.00 0.00 3.96
403 406 7.591421 TGACGGTTATCCTATAAGATTGTCA 57.409 36.000 0.00 0.00 0.00 3.58
405 408 6.267928 AGCTGACGGTTATCCTATAAGATTGT 59.732 38.462 0.00 0.00 0.00 2.71
410 413 5.707242 TGAGCTGACGGTTATCCTATAAG 57.293 43.478 0.00 0.00 0.00 1.73
414 417 5.128827 AGAAAATGAGCTGACGGTTATCCTA 59.871 40.000 0.00 0.00 0.00 2.94
426 429 5.397534 CGTGTTTCTTTCAGAAAATGAGCTG 59.602 40.000 0.00 0.00 44.84 4.24
427 430 5.296780 TCGTGTTTCTTTCAGAAAATGAGCT 59.703 36.000 0.47 0.00 44.84 4.09
436 439 4.915667 CGTCTGTATCGTGTTTCTTTCAGA 59.084 41.667 0.00 0.00 0.00 3.27
437 440 4.680110 ACGTCTGTATCGTGTTTCTTTCAG 59.320 41.667 0.00 0.00 40.07 3.02
439 442 6.032251 GTCTACGTCTGTATCGTGTTTCTTTC 59.968 42.308 0.00 0.00 41.62 2.62
440 443 5.855395 GTCTACGTCTGTATCGTGTTTCTTT 59.145 40.000 0.00 0.00 41.62 2.52
441 444 5.388944 GTCTACGTCTGTATCGTGTTTCTT 58.611 41.667 0.00 0.00 41.62 2.52
447 452 1.326852 AGCGTCTACGTCTGTATCGTG 59.673 52.381 4.24 0.00 41.62 4.35
450 455 4.605793 CGAGTAAGCGTCTACGTCTGTATC 60.606 50.000 4.24 1.62 42.22 2.24
456 461 2.517321 AACGAGTAAGCGTCTACGTC 57.483 50.000 4.24 0.00 44.86 4.34
460 465 5.611796 TGTTCTAAACGAGTAAGCGTCTA 57.388 39.130 0.00 0.00 44.86 2.59
465 470 7.643371 GGAGTAGTATGTTCTAAACGAGTAAGC 59.357 40.741 0.00 0.00 0.00 3.09
468 473 7.341805 AGGGAGTAGTATGTTCTAAACGAGTA 58.658 38.462 0.00 0.00 0.00 2.59
472 477 7.318141 TCAAAGGGAGTAGTATGTTCTAAACG 58.682 38.462 0.00 0.00 0.00 3.60
477 482 5.964477 TGGATCAAAGGGAGTAGTATGTTCT 59.036 40.000 0.00 0.00 0.00 3.01
481 486 6.653989 AGTTTGGATCAAAGGGAGTAGTATG 58.346 40.000 0.00 0.00 33.82 2.39
485 490 7.829211 TCATTTAGTTTGGATCAAAGGGAGTAG 59.171 37.037 0.00 0.00 33.82 2.57
486 491 7.610305 GTCATTTAGTTTGGATCAAAGGGAGTA 59.390 37.037 0.00 0.00 33.82 2.59
487 492 6.434340 GTCATTTAGTTTGGATCAAAGGGAGT 59.566 38.462 0.00 0.00 33.82 3.85
488 493 6.434028 TGTCATTTAGTTTGGATCAAAGGGAG 59.566 38.462 0.00 0.00 33.82 4.30
489 494 6.208599 GTGTCATTTAGTTTGGATCAAAGGGA 59.791 38.462 0.00 0.00 33.82 4.20
490 495 6.015519 TGTGTCATTTAGTTTGGATCAAAGGG 60.016 38.462 0.00 0.00 33.82 3.95
491 496 6.980593 TGTGTCATTTAGTTTGGATCAAAGG 58.019 36.000 0.00 0.00 33.82 3.11
492 497 7.040478 TCCTGTGTCATTTAGTTTGGATCAAAG 60.040 37.037 0.00 0.00 33.82 2.77
494 499 6.303054 TCCTGTGTCATTTAGTTTGGATCAA 58.697 36.000 0.00 0.00 0.00 2.57
496 501 5.355350 CCTCCTGTGTCATTTAGTTTGGATC 59.645 44.000 0.00 0.00 0.00 3.36
497 502 5.256474 CCTCCTGTGTCATTTAGTTTGGAT 58.744 41.667 0.00 0.00 0.00 3.41
498 503 4.506625 CCCTCCTGTGTCATTTAGTTTGGA 60.507 45.833 0.00 0.00 0.00 3.53
499 504 3.758554 CCCTCCTGTGTCATTTAGTTTGG 59.241 47.826 0.00 0.00 0.00 3.28
500 505 4.651778 TCCCTCCTGTGTCATTTAGTTTG 58.348 43.478 0.00 0.00 0.00 2.93
501 506 4.351111 ACTCCCTCCTGTGTCATTTAGTTT 59.649 41.667 0.00 0.00 0.00 2.66
502 507 3.910627 ACTCCCTCCTGTGTCATTTAGTT 59.089 43.478 0.00 0.00 0.00 2.24
503 508 3.521727 ACTCCCTCCTGTGTCATTTAGT 58.478 45.455 0.00 0.00 0.00 2.24
504 509 5.363868 TCATACTCCCTCCTGTGTCATTTAG 59.636 44.000 0.00 0.00 0.00 1.85
505 510 5.277250 TCATACTCCCTCCTGTGTCATTTA 58.723 41.667 0.00 0.00 0.00 1.40
506 511 4.104086 TCATACTCCCTCCTGTGTCATTT 58.896 43.478 0.00 0.00 0.00 2.32
507 512 3.724478 TCATACTCCCTCCTGTGTCATT 58.276 45.455 0.00 0.00 0.00 2.57
508 513 3.404869 TCATACTCCCTCCTGTGTCAT 57.595 47.619 0.00 0.00 0.00 3.06
509 514 2.919772 TCATACTCCCTCCTGTGTCA 57.080 50.000 0.00 0.00 0.00 3.58
510 515 4.762289 AATTCATACTCCCTCCTGTGTC 57.238 45.455 0.00 0.00 0.00 3.67
511 516 4.080299 GGAAATTCATACTCCCTCCTGTGT 60.080 45.833 0.00 0.00 0.00 3.72
512 517 4.164988 AGGAAATTCATACTCCCTCCTGTG 59.835 45.833 0.00 0.00 30.63 3.66
513 518 4.375313 AGGAAATTCATACTCCCTCCTGT 58.625 43.478 0.00 0.00 30.63 4.00
514 519 4.410228 TGAGGAAATTCATACTCCCTCCTG 59.590 45.833 0.00 0.00 39.42 3.86
515 520 4.635473 TGAGGAAATTCATACTCCCTCCT 58.365 43.478 0.00 0.00 39.42 3.69
516 521 5.574970 ATGAGGAAATTCATACTCCCTCC 57.425 43.478 0.00 0.00 39.42 4.30
517 522 6.360618 ACAATGAGGAAATTCATACTCCCTC 58.639 40.000 0.00 0.00 36.81 4.30
518 523 6.332976 ACAATGAGGAAATTCATACTCCCT 57.667 37.500 0.00 0.00 36.81 4.20
519 524 8.571336 CATAACAATGAGGAAATTCATACTCCC 58.429 37.037 0.00 0.00 36.81 4.30
520 525 9.125026 ACATAACAATGAGGAAATTCATACTCC 57.875 33.333 0.00 0.00 36.81 3.85
521 526 9.941664 CACATAACAATGAGGAAATTCATACTC 57.058 33.333 0.00 0.00 36.81 2.59
522 527 9.466497 ACACATAACAATGAGGAAATTCATACT 57.534 29.630 0.00 0.00 36.81 2.12
523 528 9.722056 GACACATAACAATGAGGAAATTCATAC 57.278 33.333 0.00 0.00 36.81 2.39
524 529 9.460019 TGACACATAACAATGAGGAAATTCATA 57.540 29.630 0.00 0.00 36.81 2.15
525 530 8.246180 GTGACACATAACAATGAGGAAATTCAT 58.754 33.333 0.00 0.00 39.42 2.57
526 531 7.230309 TGTGACACATAACAATGAGGAAATTCA 59.770 33.333 3.56 0.00 0.00 2.57
527 532 7.592938 TGTGACACATAACAATGAGGAAATTC 58.407 34.615 3.56 0.00 0.00 2.17
528 533 7.523293 TGTGACACATAACAATGAGGAAATT 57.477 32.000 3.56 0.00 0.00 1.82
529 534 7.363181 CCATGTGACACATAACAATGAGGAAAT 60.363 37.037 20.42 0.00 36.53 2.17
530 535 6.072008 CCATGTGACACATAACAATGAGGAAA 60.072 38.462 20.42 0.00 36.53 3.13
531 536 5.415389 CCATGTGACACATAACAATGAGGAA 59.585 40.000 20.42 0.00 36.53 3.36
532 537 4.943093 CCATGTGACACATAACAATGAGGA 59.057 41.667 20.42 0.00 36.53 3.71
533 538 4.701651 ACCATGTGACACATAACAATGAGG 59.298 41.667 20.42 16.20 36.53 3.86
534 539 5.885230 ACCATGTGACACATAACAATGAG 57.115 39.130 20.42 6.08 36.53 2.90
535 540 6.706295 TCTACCATGTGACACATAACAATGA 58.294 36.000 20.42 11.17 36.53 2.57
536 541 6.818142 TCTCTACCATGTGACACATAACAATG 59.182 38.462 20.42 8.99 36.53 2.82
537 542 6.946340 TCTCTACCATGTGACACATAACAAT 58.054 36.000 20.42 7.43 36.53 2.71
538 543 6.353404 TCTCTACCATGTGACACATAACAA 57.647 37.500 20.42 6.37 36.53 2.83
539 544 5.993748 TCTCTACCATGTGACACATAACA 57.006 39.130 20.42 7.69 36.53 2.41
540 545 6.341316 ACATCTCTACCATGTGACACATAAC 58.659 40.000 20.42 0.00 36.53 1.89
541 546 6.544928 ACATCTCTACCATGTGACACATAA 57.455 37.500 20.42 8.67 36.53 1.90
550 555 1.134699 CACGCCACATCTCTACCATGT 60.135 52.381 0.00 0.00 34.67 3.21
551 556 1.575244 CACGCCACATCTCTACCATG 58.425 55.000 0.00 0.00 0.00 3.66
552 557 0.179073 GCACGCCACATCTCTACCAT 60.179 55.000 0.00 0.00 0.00 3.55
553 558 1.218047 GCACGCCACATCTCTACCA 59.782 57.895 0.00 0.00 0.00 3.25
554 559 0.108138 AAGCACGCCACATCTCTACC 60.108 55.000 0.00 0.00 0.00 3.18
555 560 1.394917 CAAAGCACGCCACATCTCTAC 59.605 52.381 0.00 0.00 0.00 2.59
556 561 1.675714 CCAAAGCACGCCACATCTCTA 60.676 52.381 0.00 0.00 0.00 2.43
557 562 0.957395 CCAAAGCACGCCACATCTCT 60.957 55.000 0.00 0.00 0.00 3.10
558 563 0.955428 TCCAAAGCACGCCACATCTC 60.955 55.000 0.00 0.00 0.00 2.75
559 564 1.073025 TCCAAAGCACGCCACATCT 59.927 52.632 0.00 0.00 0.00 2.90
560 565 1.210155 GTCCAAAGCACGCCACATC 59.790 57.895 0.00 0.00 0.00 3.06
561 566 1.228245 AGTCCAAAGCACGCCACAT 60.228 52.632 0.00 0.00 0.00 3.21
562 567 1.891919 GAGTCCAAAGCACGCCACA 60.892 57.895 0.00 0.00 0.00 4.17
563 568 1.598130 AGAGTCCAAAGCACGCCAC 60.598 57.895 0.00 0.00 0.00 5.01
564 569 1.597854 CAGAGTCCAAAGCACGCCA 60.598 57.895 0.00 0.00 0.00 5.69
565 570 2.970974 GCAGAGTCCAAAGCACGCC 61.971 63.158 0.00 0.00 0.00 5.68
566 571 2.558313 GCAGAGTCCAAAGCACGC 59.442 61.111 0.00 0.00 0.00 5.34
567 572 2.328099 GGGCAGAGTCCAAAGCACG 61.328 63.158 0.00 0.00 0.00 5.34
568 573 0.823356 TTGGGCAGAGTCCAAAGCAC 60.823 55.000 0.00 0.00 44.85 4.40
569 574 1.536180 TTGGGCAGAGTCCAAAGCA 59.464 52.632 0.00 0.00 44.85 3.91
570 575 4.500265 TTGGGCAGAGTCCAAAGC 57.500 55.556 0.00 0.00 44.85 3.51
573 578 0.843309 TTCACTTGGGCAGAGTCCAA 59.157 50.000 2.79 2.79 45.69 3.53
574 579 1.067295 ATTCACTTGGGCAGAGTCCA 58.933 50.000 0.00 0.00 34.47 4.02
575 580 1.457346 CATTCACTTGGGCAGAGTCC 58.543 55.000 0.00 0.00 0.00 3.85
576 581 0.807496 GCATTCACTTGGGCAGAGTC 59.193 55.000 0.00 0.00 0.00 3.36
577 582 0.403271 AGCATTCACTTGGGCAGAGT 59.597 50.000 0.00 0.00 0.00 3.24
578 583 0.809385 CAGCATTCACTTGGGCAGAG 59.191 55.000 0.00 0.00 0.00 3.35
579 584 0.111061 ACAGCATTCACTTGGGCAGA 59.889 50.000 0.00 0.00 0.00 4.26
580 585 0.524862 GACAGCATTCACTTGGGCAG 59.475 55.000 0.00 0.00 0.00 4.85
581 586 0.178995 TGACAGCATTCACTTGGGCA 60.179 50.000 0.00 0.00 0.00 5.36
582 587 0.242017 GTGACAGCATTCACTTGGGC 59.758 55.000 9.80 0.00 42.36 5.36
588 593 6.494893 TTTATACCAAGTGACAGCATTCAC 57.505 37.500 9.18 9.18 45.45 3.18
589 594 7.701539 ATTTTATACCAAGTGACAGCATTCA 57.298 32.000 0.00 0.00 0.00 2.57
590 595 8.986477 AAATTTTATACCAAGTGACAGCATTC 57.014 30.769 0.00 0.00 0.00 2.67
591 596 8.034804 GGAAATTTTATACCAAGTGACAGCATT 58.965 33.333 0.00 0.00 0.00 3.56
592 597 7.363793 GGGAAATTTTATACCAAGTGACAGCAT 60.364 37.037 0.00 0.00 0.00 3.79
593 598 6.071616 GGGAAATTTTATACCAAGTGACAGCA 60.072 38.462 0.00 0.00 0.00 4.41
594 599 6.330278 GGGAAATTTTATACCAAGTGACAGC 58.670 40.000 0.00 0.00 0.00 4.40
595 600 6.150474 ACGGGAAATTTTATACCAAGTGACAG 59.850 38.462 0.00 0.00 0.00 3.51
596 601 6.005198 ACGGGAAATTTTATACCAAGTGACA 58.995 36.000 0.00 0.00 0.00 3.58
597 602 6.505044 ACGGGAAATTTTATACCAAGTGAC 57.495 37.500 0.00 0.00 0.00 3.67
598 603 6.490721 ACAACGGGAAATTTTATACCAAGTGA 59.509 34.615 0.00 0.00 0.00 3.41
599 604 6.683715 ACAACGGGAAATTTTATACCAAGTG 58.316 36.000 0.00 0.00 0.00 3.16
600 605 6.904463 ACAACGGGAAATTTTATACCAAGT 57.096 33.333 0.00 0.00 0.00 3.16
601 606 9.296400 CATAACAACGGGAAATTTTATACCAAG 57.704 33.333 0.00 0.00 0.00 3.61
602 607 8.804204 ACATAACAACGGGAAATTTTATACCAA 58.196 29.630 0.00 0.00 0.00 3.67
603 608 8.244802 CACATAACAACGGGAAATTTTATACCA 58.755 33.333 0.00 0.00 0.00 3.25
604 609 8.245491 ACACATAACAACGGGAAATTTTATACC 58.755 33.333 0.00 0.00 0.00 2.73
605 610 9.281075 GACACATAACAACGGGAAATTTTATAC 57.719 33.333 0.00 0.00 0.00 1.47
606 611 9.011095 TGACACATAACAACGGGAAATTTTATA 57.989 29.630 0.00 0.00 0.00 0.98
607 612 7.810759 GTGACACATAACAACGGGAAATTTTAT 59.189 33.333 0.00 0.00 0.00 1.40
608 613 7.140048 GTGACACATAACAACGGGAAATTTTA 58.860 34.615 0.00 0.00 0.00 1.52
609 614 5.980715 GTGACACATAACAACGGGAAATTTT 59.019 36.000 0.00 0.00 0.00 1.82
610 615 5.525199 GTGACACATAACAACGGGAAATTT 58.475 37.500 0.00 0.00 0.00 1.82
637 643 4.151335 GTGCTTATCACGCCATATCTCTTG 59.849 45.833 0.00 0.00 35.76 3.02
731 740 4.227134 CATCCTGCCTCCCGACCG 62.227 72.222 0.00 0.00 0.00 4.79
732 741 4.554036 GCATCCTGCCTCCCGACC 62.554 72.222 0.00 0.00 37.42 4.79
733 742 3.329542 TTGCATCCTGCCTCCCGAC 62.330 63.158 0.00 0.00 44.23 4.79
734 743 3.008517 TTGCATCCTGCCTCCCGA 61.009 61.111 0.00 0.00 44.23 5.14
763 776 3.110178 CGTTCCGTTCCGCTGGTC 61.110 66.667 0.00 0.00 0.00 4.02
794 807 1.372499 CCGTTTTCTCGCTCACCGA 60.372 57.895 0.00 0.00 45.15 4.69
894 907 2.837291 CTCAGCCGAGGGAGGGAG 60.837 72.222 0.00 0.00 35.44 4.30
1038 1066 1.457643 TATGAGAGAGGTGGGCGGG 60.458 63.158 0.00 0.00 0.00 6.13
1041 1069 0.386113 GTCGTATGAGAGAGGTGGGC 59.614 60.000 0.00 0.00 0.00 5.36
1042 1070 0.663688 CGTCGTATGAGAGAGGTGGG 59.336 60.000 0.00 0.00 0.00 4.61
1043 1071 0.663688 CCGTCGTATGAGAGAGGTGG 59.336 60.000 0.00 0.00 0.00 4.61
1044 1072 0.029567 GCCGTCGTATGAGAGAGGTG 59.970 60.000 0.00 0.00 0.00 4.00
1045 1073 0.393944 TGCCGTCGTATGAGAGAGGT 60.394 55.000 0.00 0.00 0.00 3.85
1046 1074 0.738975 TTGCCGTCGTATGAGAGAGG 59.261 55.000 0.00 0.00 0.00 3.69
1047 1075 2.033424 TGATTGCCGTCGTATGAGAGAG 59.967 50.000 0.00 0.00 0.00 3.20
1048 1076 2.021457 TGATTGCCGTCGTATGAGAGA 58.979 47.619 0.00 0.00 0.00 3.10
1049 1077 2.120232 GTGATTGCCGTCGTATGAGAG 58.880 52.381 0.00 0.00 0.00 3.20
1050 1078 1.202371 GGTGATTGCCGTCGTATGAGA 60.202 52.381 0.00 0.00 0.00 3.27
1051 1079 1.209128 GGTGATTGCCGTCGTATGAG 58.791 55.000 0.00 0.00 0.00 2.90
1052 1080 0.526739 CGGTGATTGCCGTCGTATGA 60.527 55.000 0.00 0.00 46.11 2.15
2492 2806 6.260493 CCTCAGAATCATCATTTGAAGGAGAC 59.740 42.308 0.00 0.00 38.03 3.36
2495 2809 6.317663 TCCTCAGAATCATCATTTGAAGGA 57.682 37.500 0.00 0.00 38.03 3.36
2499 2813 5.963214 TCCTCCTCAGAATCATCATTTGA 57.037 39.130 0.00 0.00 39.12 2.69
2516 2863 9.995003 GACCATATTATATCTTCATCATCCTCC 57.005 37.037 0.00 0.00 0.00 4.30
2519 2866 8.424918 ACGGACCATATTATATCTTCATCATCC 58.575 37.037 0.00 0.00 0.00 3.51
2528 2875 9.939802 GGTTTCTTAACGGACCATATTATATCT 57.060 33.333 0.00 0.00 35.00 1.98
2575 2923 1.499056 GCCTGCTGTGACGATGTTG 59.501 57.895 0.00 0.00 0.00 3.33
2582 2930 4.626081 ACCACCGCCTGCTGTGAC 62.626 66.667 14.21 0.00 33.87 3.67
2584 2932 3.907260 ATCACCACCGCCTGCTGTG 62.907 63.158 6.70 6.70 0.00 3.66
2594 4156 1.002868 AGCAGAGCACATCACCACC 60.003 57.895 0.00 0.00 0.00 4.61
2596 4158 0.036671 CAGAGCAGAGCACATCACCA 60.037 55.000 0.00 0.00 0.00 4.17
2603 4165 1.153588 GAGGAGCAGAGCAGAGCAC 60.154 63.158 0.00 0.00 0.00 4.40
2629 4191 4.347583 GTCATCCCATCATCCTCTTCTTCT 59.652 45.833 0.00 0.00 0.00 2.85
2630 4192 4.640364 GTCATCCCATCATCCTCTTCTTC 58.360 47.826 0.00 0.00 0.00 2.87
2631 4193 3.070734 CGTCATCCCATCATCCTCTTCTT 59.929 47.826 0.00 0.00 0.00 2.52
2632 4194 2.632028 CGTCATCCCATCATCCTCTTCT 59.368 50.000 0.00 0.00 0.00 2.85
2746 4316 4.019591 AGGGCTCCGATTAAAGTTAGTTGT 60.020 41.667 0.00 0.00 0.00 3.32
2749 4319 4.031611 AGAGGGCTCCGATTAAAGTTAGT 58.968 43.478 0.00 0.00 0.00 2.24
2751 4321 4.287552 AGAGAGGGCTCCGATTAAAGTTA 58.712 43.478 0.00 0.00 42.30 2.24
2779 4364 2.158813 TCACCAAGAACACCAGAGGAAC 60.159 50.000 0.00 0.00 0.00 3.62
2822 4407 2.579207 TCACGGGAATAAAGAGAGCG 57.421 50.000 0.00 0.00 0.00 5.03
2823 4408 5.411669 TCTTTTTCACGGGAATAAAGAGAGC 59.588 40.000 22.62 0.00 36.44 4.09
2824 4409 7.414540 CCATCTTTTTCACGGGAATAAAGAGAG 60.415 40.741 26.61 22.77 39.95 3.20
2825 4410 6.374333 CCATCTTTTTCACGGGAATAAAGAGA 59.626 38.462 26.61 14.75 39.95 3.10
2861 4446 1.202806 TGGATGGCCATTGCTACTAGC 60.203 52.381 21.84 2.92 39.92 3.42
2862 4447 2.936919 TGGATGGCCATTGCTACTAG 57.063 50.000 21.84 0.00 39.92 2.57
2880 4470 1.950216 TGCGGCTACTCTCTCTACATG 59.050 52.381 0.00 0.00 0.00 3.21
3006 4600 2.238395 CAAAAGGGAAGAGAGGAGAGGG 59.762 54.545 0.00 0.00 0.00 4.30
3007 4601 2.909662 ACAAAAGGGAAGAGAGGAGAGG 59.090 50.000 0.00 0.00 0.00 3.69
3042 4636 0.958382 GCATCCAAAGCCACCGTGTA 60.958 55.000 0.00 0.00 0.00 2.90
3043 4637 2.268076 GCATCCAAAGCCACCGTGT 61.268 57.895 0.00 0.00 0.00 4.49
3044 4638 1.526575 AAGCATCCAAAGCCACCGTG 61.527 55.000 0.00 0.00 0.00 4.94
3045 4639 1.228552 AAGCATCCAAAGCCACCGT 60.229 52.632 0.00 0.00 0.00 4.83
3048 4642 1.188863 ATCCAAGCATCCAAAGCCAC 58.811 50.000 0.00 0.00 0.00 5.01
3060 4654 2.134789 ATGACCACCAGAATCCAAGC 57.865 50.000 0.00 0.00 0.00 4.01
3061 4655 5.232463 CAAAAATGACCACCAGAATCCAAG 58.768 41.667 0.00 0.00 0.00 3.61
3106 4702 0.813610 TCCCATGGCGAATTAGCACG 60.814 55.000 12.78 0.00 39.27 5.34
3131 4727 0.099082 CTCACTCTCGTACGCTTCCC 59.901 60.000 11.24 0.00 0.00 3.97
3148 4744 2.419739 GGGTCCCTCTCTCGTGCTC 61.420 68.421 0.00 0.00 0.00 4.26
3149 4745 2.363147 GGGTCCCTCTCTCGTGCT 60.363 66.667 0.00 0.00 0.00 4.40
3151 4747 2.361357 ACGGGTCCCTCTCTCGTG 60.361 66.667 6.29 0.00 32.60 4.35
3153 4749 3.141488 CCACGGGTCCCTCTCTCG 61.141 72.222 6.29 0.00 0.00 4.04
3155 4751 1.913762 CAACCACGGGTCCCTCTCT 60.914 63.158 6.29 0.00 33.12 3.10
3170 4770 5.419239 TTTCCATTCCATTCCATTCCAAC 57.581 39.130 0.00 0.00 0.00 3.77
3181 4781 9.305555 CTACAAATCTATCCATTTCCATTCCAT 57.694 33.333 0.00 0.00 0.00 3.41
3182 4782 7.725397 CCTACAAATCTATCCATTTCCATTCCA 59.275 37.037 0.00 0.00 0.00 3.53
3183 4783 7.309438 GCCTACAAATCTATCCATTTCCATTCC 60.309 40.741 0.00 0.00 0.00 3.01
3184 4784 7.309438 GGCCTACAAATCTATCCATTTCCATTC 60.309 40.741 0.00 0.00 0.00 2.67
3185 4785 6.494835 GGCCTACAAATCTATCCATTTCCATT 59.505 38.462 0.00 0.00 0.00 3.16
3186 4786 6.012745 GGCCTACAAATCTATCCATTTCCAT 58.987 40.000 0.00 0.00 0.00 3.41
3187 4787 5.134339 AGGCCTACAAATCTATCCATTTCCA 59.866 40.000 1.29 0.00 0.00 3.53
3188 4788 5.635120 AGGCCTACAAATCTATCCATTTCC 58.365 41.667 1.29 0.00 0.00 3.13
3189 4789 6.015940 CCAAGGCCTACAAATCTATCCATTTC 60.016 42.308 5.16 0.00 0.00 2.17
3190 4790 5.835280 CCAAGGCCTACAAATCTATCCATTT 59.165 40.000 5.16 0.00 0.00 2.32
3231 4831 3.804193 GCCTCGCCGCTCCTTTTG 61.804 66.667 0.00 0.00 0.00 2.44
3262 4862 2.277737 CACATGGGCTGCCTCCAT 59.722 61.111 19.68 11.56 45.14 3.41
3299 4899 0.179207 TACGTACGAGCAAGCACGAG 60.179 55.000 24.41 10.88 37.80 4.18
3309 4909 0.026803 GTACAGCGGGTACGTACGAG 59.973 60.000 24.41 15.55 42.69 4.18
3331 4931 0.892755 TCAGAGTTAATGGGACGCGT 59.107 50.000 13.85 13.85 0.00 6.01
3332 4932 1.860950 CATCAGAGTTAATGGGACGCG 59.139 52.381 3.53 3.53 0.00 6.01
3333 4933 3.179443 TCATCAGAGTTAATGGGACGC 57.821 47.619 0.00 0.00 0.00 5.19
3334 4934 4.060900 CCATCATCAGAGTTAATGGGACG 58.939 47.826 0.00 0.00 34.50 4.79
3335 4935 3.817647 GCCATCATCAGAGTTAATGGGAC 59.182 47.826 0.00 0.00 37.85 4.46
3336 4936 3.718434 AGCCATCATCAGAGTTAATGGGA 59.282 43.478 0.00 0.00 37.85 4.37
3337 4937 3.819337 CAGCCATCATCAGAGTTAATGGG 59.181 47.826 0.00 0.00 37.85 4.00
3348 4948 0.471191 CTACCTGCCAGCCATCATCA 59.529 55.000 0.00 0.00 0.00 3.07
3349 4949 0.250640 CCTACCTGCCAGCCATCATC 60.251 60.000 0.00 0.00 0.00 2.92
3351 4951 3.047807 GCCTACCTGCCAGCCATCA 62.048 63.158 0.00 0.00 0.00 3.07
3352 4952 2.203266 GCCTACCTGCCAGCCATC 60.203 66.667 0.00 0.00 0.00 3.51
3400 5001 0.794981 CGAGAAGAAGCGTGTCTCCG 60.795 60.000 4.90 0.00 35.39 4.63
3454 5065 2.315925 TAAATTGCAGGAGCGAGGAG 57.684 50.000 0.00 0.00 46.23 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.