Multiple sequence alignment - TraesCS6D01G328700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G328700 chr6D 100.000 6100 0 0 1 6100 433290366 433284267 0.000000e+00 11265.0
1 TraesCS6D01G328700 chr6D 93.665 1105 38 14 3900 4982 433164329 433163235 0.000000e+00 1624.0
2 TraesCS6D01G328700 chr6D 91.071 504 26 8 5612 6100 433159404 433158905 0.000000e+00 664.0
3 TraesCS6D01G328700 chr6D 94.132 409 14 5 3515 3913 433206658 433206250 1.120000e-171 614.0
4 TraesCS6D01G328700 chr6D 90.431 418 22 7 3517 3924 432963623 432963214 9.000000e-148 534.0
5 TraesCS6D01G328700 chr6D 84.348 460 61 9 4328 4778 433036170 433035713 2.020000e-119 440.0
6 TraesCS6D01G328700 chr6D 89.545 220 17 5 4974 5189 433162024 433161807 2.170000e-69 274.0
7 TraesCS6D01G328700 chr6D 89.634 164 11 3 5372 5531 433160369 433160208 2.880000e-48 204.0
8 TraesCS6D01G328700 chr6D 98.667 75 1 0 5184 5258 433161784 433161710 3.840000e-27 134.0
9 TraesCS6D01G328700 chr6D 95.833 48 2 0 5549 5596 433160209 433160162 1.820000e-10 78.7
10 TraesCS6D01G328700 chr6D 83.784 74 2 2 5262 5335 433161685 433161622 1.840000e-05 62.1
11 TraesCS6D01G328700 chr6B 95.461 2732 86 21 2398 5098 653884823 653882099 0.000000e+00 4324.0
12 TraesCS6D01G328700 chr6B 95.957 1113 30 5 3001 4098 653221446 653222558 0.000000e+00 1792.0
13 TraesCS6D01G328700 chr6B 95.707 1025 37 7 4167 5187 653222553 653223574 0.000000e+00 1642.0
14 TraesCS6D01G328700 chr6B 87.676 1209 85 31 635 1810 653885998 653884821 0.000000e+00 1349.0
15 TraesCS6D01G328700 chr6B 93.880 817 33 6 5184 5997 653223831 653224633 0.000000e+00 1216.0
16 TraesCS6D01G328700 chr6B 95.748 635 26 1 3946 4579 653220813 653221447 0.000000e+00 1022.0
17 TraesCS6D01G328700 chr6B 85.760 625 50 23 452 1065 653889048 653888452 5.190000e-175 625.0
18 TraesCS6D01G328700 chr6B 91.143 350 16 2 5493 5842 653881266 653880932 1.550000e-125 460.0
19 TraesCS6D01G328700 chr6B 95.210 167 6 2 5343 5508 653881447 653881282 4.690000e-66 263.0
20 TraesCS6D01G328700 chr6B 78.571 406 49 21 4490 4872 655070489 655070879 3.680000e-57 233.0
21 TraesCS6D01G328700 chr6B 91.613 155 12 1 43 196 653886553 653886399 4.790000e-51 213.0
22 TraesCS6D01G328700 chr6B 91.447 152 7 4 5842 5991 653879905 653879758 2.880000e-48 204.0
23 TraesCS6D01G328700 chr6B 95.902 122 4 1 5979 6100 653877072 653876952 4.820000e-46 196.0
24 TraesCS6D01G328700 chr6B 95.370 108 5 0 5993 6100 653227327 653227434 8.130000e-39 172.0
25 TraesCS6D01G328700 chr6B 96.970 99 3 0 5184 5282 653881724 653881626 3.780000e-37 167.0
26 TraesCS6D01G328700 chr6B 96.774 93 3 0 5313 5405 653881542 653881450 8.190000e-34 156.0
27 TraesCS6D01G328700 chr6B 93.548 93 6 0 5097 5189 653881839 653881747 8.240000e-29 139.0
28 TraesCS6D01G328700 chr6B 98.214 56 1 0 1771 1826 144013130 144013185 1.400000e-16 99.0
29 TraesCS6D01G328700 chr6A 97.043 2469 55 8 2736 5189 579148214 579145749 0.000000e+00 4139.0
30 TraesCS6D01G328700 chr6A 88.999 1518 105 32 677 2147 579150234 579148732 0.000000e+00 1821.0
31 TraesCS6D01G328700 chr6A 97.842 417 8 1 2323 2738 579148734 579148318 0.000000e+00 719.0
32 TraesCS6D01G328700 chr6A 85.799 338 31 13 355 681 579152349 579152018 5.850000e-90 342.0
33 TraesCS6D01G328700 chr6A 95.484 155 7 0 5270 5424 579145608 579145454 1.310000e-61 248.0
34 TraesCS6D01G328700 chr6A 79.202 351 44 19 4544 4874 579767116 579767457 3.700000e-52 217.0
35 TraesCS6D01G328700 chr3B 87.850 107 13 0 3992 4098 126001521 126001415 6.420000e-25 126.0
36 TraesCS6D01G328700 chr3A 87.850 107 13 0 3992 4098 93895168 93895062 6.420000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G328700 chr6D 433284267 433290366 6099 True 11265.0 11265 100.000000 1 6100 1 chr6D.!!$R4 6099
1 TraesCS6D01G328700 chr6D 433158905 433164329 5424 True 434.4 1624 91.742714 3900 6100 7 chr6D.!!$R5 2200
2 TraesCS6D01G328700 chr6B 653220813 653227434 6621 False 1168.8 1792 95.332400 3001 6100 5 chr6B.!!$F3 3099
3 TraesCS6D01G328700 chr6B 653876952 653889048 12096 True 736.0 4324 92.864000 43 6100 11 chr6B.!!$R1 6057
4 TraesCS6D01G328700 chr6A 579145454 579152349 6895 True 1453.8 4139 93.033400 355 5424 5 chr6A.!!$R1 5069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 2754 0.240945 GGTATTGCCACACTGCACAC 59.759 55.000 0.00 0.0 41.88 3.82 F
1468 5788 0.036388 TGTCAAATCGGAGGTGGCTC 60.036 55.000 0.00 0.0 0.00 4.70 F
2216 6592 0.030235 CTACGCGACGGGAATCATCA 59.970 55.000 15.93 0.0 0.00 3.07 F
2217 6593 0.248743 TACGCGACGGGAATCATCAC 60.249 55.000 15.93 0.0 0.00 3.06 F
2283 6659 0.337082 TGTTATCCCTCGGTCCCAGA 59.663 55.000 0.00 0.0 0.00 3.86 F
2285 6661 0.635009 TTATCCCTCGGTCCCAGACT 59.365 55.000 0.00 0.0 32.47 3.24 F
2287 6663 0.861155 ATCCCTCGGTCCCAGACTAT 59.139 55.000 0.00 0.0 32.47 2.12 F
2933 7419 1.261480 ACATAGATAGCAGGAGGGCG 58.739 55.000 0.00 0.0 39.27 6.13 F
4230 8746 1.684248 GCCATGCCTTTCATCCTCTGT 60.684 52.381 0.00 0.0 31.79 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2197 6573 0.030235 TGATGATTCCCGTCGCGTAG 59.970 55.000 5.77 0.59 33.46 3.51 R
2309 6685 0.040067 CCGCCTTCAGAACTTGCAAC 60.040 55.000 0.00 0.00 0.00 4.17 R
3909 8425 6.106673 GGTTCGTATTATGACCCATCCATAG 58.893 44.000 0.00 0.00 0.00 2.23 R
4230 8746 3.628942 GGAGACAACAGCATATCATTGCA 59.371 43.478 0.00 0.00 45.23 4.08 R
4526 9059 2.922740 AAGGCAAGTCGGTAAGTGAA 57.077 45.000 0.00 0.00 0.00 3.18 R
4550 9083 1.283793 CAGCAAACCTGGAAGCACG 59.716 57.895 0.00 0.00 37.93 5.34 R
4644 9177 2.542020 TCTTGAGCCATTTGTCGACA 57.458 45.000 15.76 15.76 0.00 4.35 R
5000 10764 0.396695 CTGGGCCAGCATTTCTCCAT 60.397 55.000 22.68 0.00 0.00 3.41 R
5593 13302 0.250124 CACGTGTAAGCAACTGGGGA 60.250 55.000 7.58 0.00 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 2561 3.951663 ACTAATGTTAGGAGTTGGGTGC 58.048 45.455 4.92 0.00 35.08 5.01
119 2574 3.823873 AGTTGGGTGCAACGATGATTTTA 59.176 39.130 0.00 0.00 39.83 1.52
120 2575 3.840890 TGGGTGCAACGATGATTTTAC 57.159 42.857 0.00 0.00 38.12 2.01
124 2579 3.365868 GGTGCAACGATGATTTTACAGCA 60.366 43.478 0.00 0.00 38.12 4.41
133 2588 5.796935 CGATGATTTTACAGCAAAACAGGAG 59.203 40.000 0.00 0.00 38.90 3.69
142 2597 2.360165 AGCAAAACAGGAGCAAAGAGTG 59.640 45.455 0.00 0.00 0.00 3.51
171 2626 1.670811 GCAGGTGCGTGCAACTATTAT 59.329 47.619 12.76 0.00 42.91 1.28
204 2659 3.375782 ACGTAGTAGGTGCGACTTTTT 57.624 42.857 0.00 0.00 41.94 1.94
205 2660 3.311966 ACGTAGTAGGTGCGACTTTTTC 58.688 45.455 0.00 0.00 41.94 2.29
207 2662 3.985925 CGTAGTAGGTGCGACTTTTTCTT 59.014 43.478 0.00 0.00 36.12 2.52
208 2663 4.446719 CGTAGTAGGTGCGACTTTTTCTTT 59.553 41.667 0.00 0.00 36.12 2.52
209 2664 5.050567 CGTAGTAGGTGCGACTTTTTCTTTT 60.051 40.000 0.00 0.00 36.12 2.27
210 2665 5.830000 AGTAGGTGCGACTTTTTCTTTTT 57.170 34.783 0.00 0.00 0.00 1.94
211 2666 5.817988 AGTAGGTGCGACTTTTTCTTTTTC 58.182 37.500 0.00 0.00 0.00 2.29
212 2667 4.983671 AGGTGCGACTTTTTCTTTTTCT 57.016 36.364 0.00 0.00 0.00 2.52
213 2668 5.324784 AGGTGCGACTTTTTCTTTTTCTT 57.675 34.783 0.00 0.00 0.00 2.52
214 2669 5.720202 AGGTGCGACTTTTTCTTTTTCTTT 58.280 33.333 0.00 0.00 0.00 2.52
215 2670 6.163476 AGGTGCGACTTTTTCTTTTTCTTTT 58.837 32.000 0.00 0.00 0.00 2.27
216 2671 6.649141 AGGTGCGACTTTTTCTTTTTCTTTTT 59.351 30.769 0.00 0.00 0.00 1.94
217 2672 6.736405 GGTGCGACTTTTTCTTTTTCTTTTTG 59.264 34.615 0.00 0.00 0.00 2.44
218 2673 7.287950 GTGCGACTTTTTCTTTTTCTTTTTGT 58.712 30.769 0.00 0.00 0.00 2.83
219 2674 7.266125 GTGCGACTTTTTCTTTTTCTTTTTGTG 59.734 33.333 0.00 0.00 0.00 3.33
220 2675 7.169982 TGCGACTTTTTCTTTTTCTTTTTGTGA 59.830 29.630 0.00 0.00 0.00 3.58
221 2676 7.684083 GCGACTTTTTCTTTTTCTTTTTGTGAG 59.316 33.333 0.00 0.00 0.00 3.51
222 2677 8.911662 CGACTTTTTCTTTTTCTTTTTGTGAGA 58.088 29.630 0.00 0.00 0.00 3.27
234 2689 8.974060 TTCTTTTTGTGAGAAACATAGTAGGT 57.026 30.769 0.00 0.00 38.99 3.08
235 2690 8.378172 TCTTTTTGTGAGAAACATAGTAGGTG 57.622 34.615 0.00 0.00 38.99 4.00
236 2691 7.990886 TCTTTTTGTGAGAAACATAGTAGGTGT 59.009 33.333 0.00 0.00 38.99 4.16
237 2692 7.490962 TTTTGTGAGAAACATAGTAGGTGTG 57.509 36.000 0.00 0.00 38.99 3.82
238 2693 4.566004 TGTGAGAAACATAGTAGGTGTGC 58.434 43.478 0.00 0.00 32.36 4.57
239 2694 3.933332 GTGAGAAACATAGTAGGTGTGCC 59.067 47.826 0.00 0.00 0.00 5.01
240 2695 6.743774 TGTGAGAAACATAGTAGGTGTGCCT 61.744 44.000 0.00 0.00 40.52 4.75
241 2696 5.020795 TGAGAAACATAGTAGGTGTGCCTA 58.979 41.667 0.00 0.00 44.90 3.93
242 2697 8.884221 TGTGAGAAACATAGTAGGTGTGCCTAA 61.884 40.741 0.00 0.00 40.48 2.69
256 2711 5.449304 GTGTGCCTAACAGTGTTATTTCAC 58.551 41.667 22.35 22.35 40.26 3.18
258 2713 5.238432 TGTGCCTAACAGTGTTATTTCACAG 59.762 40.000 25.14 13.49 40.37 3.66
277 2732 7.584122 TCACAGTAAAAGAGAGTCACTAGTT 57.416 36.000 0.00 0.00 0.00 2.24
284 2739 6.919775 AAAGAGAGTCACTAGTTGTGGTAT 57.080 37.500 4.86 0.00 46.20 2.73
299 2754 0.240945 GGTATTGCCACACTGCACAC 59.759 55.000 0.00 0.00 41.88 3.82
300 2755 0.950836 GTATTGCCACACTGCACACA 59.049 50.000 0.00 0.00 41.88 3.72
302 2757 1.036481 ATTGCCACACTGCACACACA 61.036 50.000 0.00 0.00 41.88 3.72
305 2760 0.595567 GCCACACTGCACACACAATG 60.596 55.000 0.00 0.00 0.00 2.82
315 2770 1.673400 CACACACAATGTTCCCGTCAA 59.327 47.619 0.00 0.00 40.64 3.18
316 2771 2.098280 CACACACAATGTTCCCGTCAAA 59.902 45.455 0.00 0.00 40.64 2.69
317 2772 2.955660 ACACACAATGTTCCCGTCAAAT 59.044 40.909 0.00 0.00 38.98 2.32
318 2773 3.383185 ACACACAATGTTCCCGTCAAATT 59.617 39.130 0.00 0.00 38.98 1.82
319 2774 3.980775 CACACAATGTTCCCGTCAAATTC 59.019 43.478 0.00 0.00 0.00 2.17
320 2775 3.888930 ACACAATGTTCCCGTCAAATTCT 59.111 39.130 0.00 0.00 0.00 2.40
321 2776 5.049060 CACACAATGTTCCCGTCAAATTCTA 60.049 40.000 0.00 0.00 0.00 2.10
322 2777 5.533154 ACACAATGTTCCCGTCAAATTCTAA 59.467 36.000 0.00 0.00 0.00 2.10
323 2778 6.039941 ACACAATGTTCCCGTCAAATTCTAAA 59.960 34.615 0.00 0.00 0.00 1.85
324 2779 6.920758 CACAATGTTCCCGTCAAATTCTAAAA 59.079 34.615 0.00 0.00 0.00 1.52
325 2780 7.436673 CACAATGTTCCCGTCAAATTCTAAAAA 59.563 33.333 0.00 0.00 0.00 1.94
361 2816 4.766404 AAAAGACAATGTTCCCGTCATC 57.234 40.909 0.00 0.00 31.92 2.92
362 2817 3.417069 AAGACAATGTTCCCGTCATCA 57.583 42.857 0.00 0.00 31.92 3.07
376 2831 6.969366 TCCCGTCATCATAGCAATATTTTTG 58.031 36.000 0.00 0.00 0.00 2.44
378 2833 7.717436 TCCCGTCATCATAGCAATATTTTTGTA 59.283 33.333 0.00 0.00 0.00 2.41
379 2834 7.803189 CCCGTCATCATAGCAATATTTTTGTAC 59.197 37.037 0.00 0.00 0.00 2.90
380 2835 8.341903 CCGTCATCATAGCAATATTTTTGTACA 58.658 33.333 0.00 0.00 0.00 2.90
381 2836 9.373750 CGTCATCATAGCAATATTTTTGTACAG 57.626 33.333 0.00 0.00 0.00 2.74
397 2852 7.900782 TTTGTACAGAAATGGAAGTACTAGC 57.099 36.000 0.00 0.00 38.09 3.42
455 2910 5.615289 AGTGTTTTAGCTCACAGTCAATCT 58.385 37.500 6.11 0.00 37.07 2.40
507 2995 0.719465 CGAAGTCCACATACCGCAAC 59.281 55.000 0.00 0.00 0.00 4.17
538 3027 4.270008 CCCAACCTAACCTTCCAATACTG 58.730 47.826 0.00 0.00 0.00 2.74
572 3061 3.395639 ACGCGTCTTCATTTTCCAAGTA 58.604 40.909 5.58 0.00 0.00 2.24
574 3063 4.273969 ACGCGTCTTCATTTTCCAAGTAAA 59.726 37.500 5.58 0.00 0.00 2.01
577 3066 7.018826 CGCGTCTTCATTTTCCAAGTAAATTA 58.981 34.615 0.00 0.00 0.00 1.40
645 3161 6.100004 TCGAGAGTGGTATCTTCACATTTTC 58.900 40.000 0.00 0.00 37.58 2.29
710 5015 5.034797 CGCTCTCGGTTTTCTTTTCTTTTT 58.965 37.500 0.00 0.00 0.00 1.94
721 5026 5.895636 TCTTTTCTTTTTGAGACAGCACA 57.104 34.783 0.00 0.00 33.02 4.57
727 5044 2.309528 TTTGAGACAGCACACGTTCT 57.690 45.000 0.00 0.00 0.00 3.01
1184 5501 2.024871 CGCGCTTACTCCTCCTCG 59.975 66.667 5.56 0.00 0.00 4.63
1253 5571 4.459089 GCCAGCTCCGTCAGGTCC 62.459 72.222 0.00 0.00 39.05 4.46
1408 5726 5.123227 GGTAACGATCTCATCCCAAAATCA 58.877 41.667 0.00 0.00 0.00 2.57
1409 5727 5.007724 GGTAACGATCTCATCCCAAAATCAC 59.992 44.000 0.00 0.00 0.00 3.06
1468 5788 0.036388 TGTCAAATCGGAGGTGGCTC 60.036 55.000 0.00 0.00 0.00 4.70
1488 5808 0.604073 TTGTGTTGATACGCCCTCGA 59.396 50.000 0.00 0.00 39.41 4.04
1561 5881 3.701040 AGTACGGTCCGTGTAATATTGGT 59.299 43.478 27.20 0.00 41.39 3.67
1564 5884 3.133362 ACGGTCCGTGTAATATTGGTCAT 59.867 43.478 18.08 0.00 39.18 3.06
1585 5905 1.400494 GGTAATTTGCGGCGATCTTGT 59.600 47.619 12.98 0.00 0.00 3.16
1651 5987 4.393680 GTCGTTGTGCCTATTATTGGAACA 59.606 41.667 2.34 2.34 41.13 3.18
1675 6011 7.441458 ACAATCTGTGGTTAGTTTTAGTCAGTC 59.559 37.037 0.00 0.00 0.00 3.51
1682 6018 8.283291 GTGGTTAGTTTTAGTCAGTCTTCATTG 58.717 37.037 0.00 0.00 0.00 2.82
1684 6020 7.444487 GGTTAGTTTTAGTCAGTCTTCATTGGT 59.556 37.037 0.00 0.00 0.00 3.67
1722 6058 4.501400 GCATTGCTGTTCAGGGTTTAAGTT 60.501 41.667 0.16 0.00 0.00 2.66
1729 6065 5.617252 TGTTCAGGGTTTAAGTTCTAGTGG 58.383 41.667 0.00 0.00 0.00 4.00
1755 6092 5.191426 CCTATTTGGATCATGCTCCTATGG 58.809 45.833 16.28 11.02 38.35 2.74
1848 6185 2.030451 GCCTCTATAGCTTGCATTTGGC 60.030 50.000 0.00 0.00 45.13 4.52
1867 6204 4.066490 TGGCGCTTAGTTTGTTTAGCTTA 58.934 39.130 7.64 0.00 0.00 3.09
1888 6225 2.928801 AGCGGTATGTTGGCATGATA 57.071 45.000 0.00 0.00 36.58 2.15
1893 6230 4.513692 GCGGTATGTTGGCATGATAAACTA 59.486 41.667 0.00 0.00 36.58 2.24
1931 6276 1.824230 GATGTTGTGCTATGGCCCAAA 59.176 47.619 0.00 0.00 37.54 3.28
1941 6286 3.006217 GCTATGGCCCAAATGATCCTTTC 59.994 47.826 0.00 0.00 0.00 2.62
1944 6289 3.631250 TGGCCCAAATGATCCTTTCTAC 58.369 45.455 0.00 0.00 0.00 2.59
1956 6301 5.958380 TGATCCTTTCTACCTCAGTGTATGT 59.042 40.000 0.00 0.00 0.00 2.29
1958 6303 5.580998 TCCTTTCTACCTCAGTGTATGTCT 58.419 41.667 0.00 0.00 0.00 3.41
1959 6304 6.728411 TCCTTTCTACCTCAGTGTATGTCTA 58.272 40.000 0.00 0.00 0.00 2.59
1961 6306 7.839705 TCCTTTCTACCTCAGTGTATGTCTATT 59.160 37.037 0.00 0.00 0.00 1.73
1963 6308 9.307121 CTTTCTACCTCAGTGTATGTCTATTTG 57.693 37.037 0.00 0.00 0.00 2.32
1964 6309 7.348080 TCTACCTCAGTGTATGTCTATTTGG 57.652 40.000 0.00 0.00 0.00 3.28
1965 6310 7.123383 TCTACCTCAGTGTATGTCTATTTGGA 58.877 38.462 0.00 0.00 0.00 3.53
1966 6311 6.814954 ACCTCAGTGTATGTCTATTTGGAT 57.185 37.500 0.00 0.00 0.00 3.41
1967 6312 7.200434 ACCTCAGTGTATGTCTATTTGGATT 57.800 36.000 0.00 0.00 0.00 3.01
1968 6313 7.050377 ACCTCAGTGTATGTCTATTTGGATTG 58.950 38.462 0.00 0.00 0.00 2.67
1969 6314 6.484643 CCTCAGTGTATGTCTATTTGGATTGG 59.515 42.308 0.00 0.00 0.00 3.16
1970 6315 7.194112 TCAGTGTATGTCTATTTGGATTGGA 57.806 36.000 0.00 0.00 0.00 3.53
1971 6316 7.047891 TCAGTGTATGTCTATTTGGATTGGAC 58.952 38.462 0.00 0.00 0.00 4.02
1972 6317 6.260936 CAGTGTATGTCTATTTGGATTGGACC 59.739 42.308 0.00 0.00 0.00 4.46
1973 6318 6.158695 AGTGTATGTCTATTTGGATTGGACCT 59.841 38.462 0.00 0.00 0.00 3.85
1974 6319 6.828785 GTGTATGTCTATTTGGATTGGACCTT 59.171 38.462 0.00 0.00 0.00 3.50
1975 6320 7.990886 GTGTATGTCTATTTGGATTGGACCTTA 59.009 37.037 0.00 0.00 0.00 2.69
1976 6321 8.723365 TGTATGTCTATTTGGATTGGACCTTAT 58.277 33.333 0.00 0.00 0.00 1.73
1977 6322 9.574516 GTATGTCTATTTGGATTGGACCTTATT 57.425 33.333 0.00 0.00 0.00 1.40
2056 6432 5.895636 TCACTTGAGTTTGATGTTGTTGT 57.104 34.783 0.00 0.00 0.00 3.32
2067 6443 8.784043 AGTTTGATGTTGTTGTCTATTAACCTC 58.216 33.333 0.00 0.00 0.00 3.85
2068 6444 7.681939 TTGATGTTGTTGTCTATTAACCTCC 57.318 36.000 0.00 0.00 0.00 4.30
2142 6518 5.627499 TTCATTGTATTCTGAACCTGTGC 57.373 39.130 0.00 0.00 0.00 4.57
2144 6520 6.048732 TCATTGTATTCTGAACCTGTGCTA 57.951 37.500 0.00 0.00 0.00 3.49
2145 6521 6.472016 TCATTGTATTCTGAACCTGTGCTAA 58.528 36.000 0.00 0.00 0.00 3.09
2146 6522 6.595326 TCATTGTATTCTGAACCTGTGCTAAG 59.405 38.462 0.00 0.00 0.00 2.18
2147 6523 4.253685 TGTATTCTGAACCTGTGCTAAGC 58.746 43.478 0.00 0.00 0.00 3.09
2148 6524 2.185004 TTCTGAACCTGTGCTAAGCC 57.815 50.000 0.00 0.00 0.00 4.35
2149 6525 1.055849 TCTGAACCTGTGCTAAGCCA 58.944 50.000 0.00 0.00 0.00 4.75
2150 6526 1.160137 CTGAACCTGTGCTAAGCCAC 58.840 55.000 0.00 0.00 36.28 5.01
2151 6527 0.250727 TGAACCTGTGCTAAGCCACC 60.251 55.000 0.00 0.00 34.85 4.61
2152 6528 0.960861 GAACCTGTGCTAAGCCACCC 60.961 60.000 0.00 0.00 34.85 4.61
2153 6529 1.715019 AACCTGTGCTAAGCCACCCA 61.715 55.000 0.00 0.00 34.85 4.51
2154 6530 1.675641 CCTGTGCTAAGCCACCCAC 60.676 63.158 0.00 0.00 34.85 4.61
2155 6531 1.073025 CTGTGCTAAGCCACCCACA 59.927 57.895 0.00 0.00 36.80 4.17
2156 6532 0.322816 CTGTGCTAAGCCACCCACAT 60.323 55.000 0.00 0.00 37.54 3.21
2157 6533 0.988063 TGTGCTAAGCCACCCACATA 59.012 50.000 0.00 0.00 33.66 2.29
2158 6534 1.065491 TGTGCTAAGCCACCCACATAG 60.065 52.381 0.00 0.00 33.66 2.23
2159 6535 0.107214 TGCTAAGCCACCCACATAGC 60.107 55.000 0.00 0.00 39.47 2.97
2160 6536 0.181350 GCTAAGCCACCCACATAGCT 59.819 55.000 0.00 0.00 36.81 3.32
2161 6537 1.408822 GCTAAGCCACCCACATAGCTT 60.409 52.381 0.00 1.39 46.70 3.74
2162 6538 2.565841 CTAAGCCACCCACATAGCTTC 58.434 52.381 0.00 0.00 44.13 3.86
2163 6539 0.698238 AAGCCACCCACATAGCTTCA 59.302 50.000 0.00 0.00 41.60 3.02
2164 6540 0.921896 AGCCACCCACATAGCTTCAT 59.078 50.000 0.00 0.00 29.27 2.57
2165 6541 2.126882 AGCCACCCACATAGCTTCATA 58.873 47.619 0.00 0.00 29.27 2.15
2166 6542 2.158755 AGCCACCCACATAGCTTCATAC 60.159 50.000 0.00 0.00 29.27 2.39
2167 6543 2.158755 GCCACCCACATAGCTTCATACT 60.159 50.000 0.00 0.00 0.00 2.12
2168 6544 3.470709 CCACCCACATAGCTTCATACTG 58.529 50.000 0.00 0.00 0.00 2.74
2169 6545 3.118261 CCACCCACATAGCTTCATACTGT 60.118 47.826 0.00 0.00 0.00 3.55
2170 6546 4.517285 CACCCACATAGCTTCATACTGTT 58.483 43.478 0.00 0.00 0.00 3.16
2171 6547 4.333649 CACCCACATAGCTTCATACTGTTG 59.666 45.833 0.00 0.00 0.00 3.33
2172 6548 3.879295 CCCACATAGCTTCATACTGTTGG 59.121 47.826 0.00 0.00 0.00 3.77
2173 6549 3.313526 CCACATAGCTTCATACTGTTGGC 59.686 47.826 0.00 0.00 0.00 4.52
2174 6550 4.194640 CACATAGCTTCATACTGTTGGCT 58.805 43.478 0.00 0.00 0.00 4.75
2175 6551 5.359756 CACATAGCTTCATACTGTTGGCTA 58.640 41.667 0.00 0.00 36.84 3.93
2176 6552 5.994054 CACATAGCTTCATACTGTTGGCTAT 59.006 40.000 0.00 0.00 41.67 2.97
2177 6553 7.154656 CACATAGCTTCATACTGTTGGCTATA 58.845 38.462 0.00 0.00 39.83 1.31
2178 6554 7.657354 CACATAGCTTCATACTGTTGGCTATAA 59.343 37.037 0.00 0.00 39.83 0.98
2179 6555 8.378565 ACATAGCTTCATACTGTTGGCTATAAT 58.621 33.333 0.00 0.00 39.83 1.28
2180 6556 8.663025 CATAGCTTCATACTGTTGGCTATAATG 58.337 37.037 0.00 0.00 39.83 1.90
2181 6557 6.830912 AGCTTCATACTGTTGGCTATAATGA 58.169 36.000 0.00 0.00 0.00 2.57
2182 6558 6.708054 AGCTTCATACTGTTGGCTATAATGAC 59.292 38.462 0.00 0.00 0.00 3.06
2183 6559 6.483307 GCTTCATACTGTTGGCTATAATGACA 59.517 38.462 0.00 0.00 0.00 3.58
2184 6560 7.012327 GCTTCATACTGTTGGCTATAATGACAA 59.988 37.037 0.00 0.00 31.69 3.18
2193 6569 7.880160 TTGGCTATAATGACAACTTTATGCT 57.120 32.000 0.00 0.00 28.68 3.79
2194 6570 7.263100 TGGCTATAATGACAACTTTATGCTG 57.737 36.000 0.00 0.00 31.76 4.41
2195 6571 6.828273 TGGCTATAATGACAACTTTATGCTGT 59.172 34.615 0.00 0.00 31.76 4.40
2196 6572 7.339212 TGGCTATAATGACAACTTTATGCTGTT 59.661 33.333 0.00 0.00 31.76 3.16
2197 6573 7.857885 GGCTATAATGACAACTTTATGCTGTTC 59.142 37.037 0.00 0.00 31.76 3.18
2198 6574 8.616076 GCTATAATGACAACTTTATGCTGTTCT 58.384 33.333 0.00 0.00 31.76 3.01
2201 6577 5.839262 TGACAACTTTATGCTGTTCTACG 57.161 39.130 0.00 0.00 0.00 3.51
2202 6578 4.151689 TGACAACTTTATGCTGTTCTACGC 59.848 41.667 0.00 0.00 0.00 4.42
2203 6579 3.122948 ACAACTTTATGCTGTTCTACGCG 59.877 43.478 3.53 3.53 0.00 6.01
2204 6580 3.226346 ACTTTATGCTGTTCTACGCGA 57.774 42.857 15.93 0.00 0.00 5.87
2205 6581 2.921754 ACTTTATGCTGTTCTACGCGAC 59.078 45.455 15.93 0.00 0.00 5.19
2206 6582 1.541475 TTATGCTGTTCTACGCGACG 58.459 50.000 15.93 2.45 0.00 5.12
2207 6583 0.248336 TATGCTGTTCTACGCGACGG 60.248 55.000 15.93 6.62 0.00 4.79
2208 6584 2.879462 GCTGTTCTACGCGACGGG 60.879 66.667 15.93 10.72 0.00 5.28
2209 6585 2.872557 CTGTTCTACGCGACGGGA 59.127 61.111 15.93 1.66 0.00 5.14
2210 6586 1.210931 CTGTTCTACGCGACGGGAA 59.789 57.895 15.93 8.38 0.00 3.97
2211 6587 0.179145 CTGTTCTACGCGACGGGAAT 60.179 55.000 15.93 0.00 0.00 3.01
2212 6588 0.179156 TGTTCTACGCGACGGGAATC 60.179 55.000 15.93 6.87 0.00 2.52
2213 6589 0.179156 GTTCTACGCGACGGGAATCA 60.179 55.000 15.93 0.00 0.00 2.57
2214 6590 0.742505 TTCTACGCGACGGGAATCAT 59.257 50.000 15.93 0.00 0.00 2.45
2215 6591 0.309922 TCTACGCGACGGGAATCATC 59.690 55.000 15.93 0.00 0.00 2.92
2216 6592 0.030235 CTACGCGACGGGAATCATCA 59.970 55.000 15.93 0.00 0.00 3.07
2217 6593 0.248743 TACGCGACGGGAATCATCAC 60.249 55.000 15.93 0.00 0.00 3.06
2218 6594 1.226974 CGCGACGGGAATCATCACT 60.227 57.895 0.00 0.00 0.00 3.41
2219 6595 0.806102 CGCGACGGGAATCATCACTT 60.806 55.000 0.00 0.00 0.00 3.16
2220 6596 0.652592 GCGACGGGAATCATCACTTG 59.347 55.000 0.00 0.00 0.00 3.16
2221 6597 0.652592 CGACGGGAATCATCACTTGC 59.347 55.000 0.00 0.00 0.00 4.01
2222 6598 1.740380 CGACGGGAATCATCACTTGCT 60.740 52.381 0.00 0.00 0.00 3.91
2223 6599 1.936547 GACGGGAATCATCACTTGCTC 59.063 52.381 0.00 0.00 0.00 4.26
2224 6600 0.933097 CGGGAATCATCACTTGCTCG 59.067 55.000 0.00 0.00 0.00 5.03
2225 6601 1.471501 CGGGAATCATCACTTGCTCGA 60.472 52.381 0.00 0.00 0.00 4.04
2226 6602 2.804572 CGGGAATCATCACTTGCTCGAT 60.805 50.000 0.00 0.00 0.00 3.59
2227 6603 3.209410 GGGAATCATCACTTGCTCGATT 58.791 45.455 0.00 0.00 0.00 3.34
2228 6604 3.629398 GGGAATCATCACTTGCTCGATTT 59.371 43.478 0.00 0.00 0.00 2.17
2229 6605 4.816385 GGGAATCATCACTTGCTCGATTTA 59.184 41.667 0.00 0.00 0.00 1.40
2230 6606 5.471456 GGGAATCATCACTTGCTCGATTTAT 59.529 40.000 0.00 0.00 0.00 1.40
2231 6607 6.348050 GGGAATCATCACTTGCTCGATTTATC 60.348 42.308 0.00 0.00 0.00 1.75
2232 6608 6.348050 GGAATCATCACTTGCTCGATTTATCC 60.348 42.308 0.00 0.00 0.00 2.59
2233 6609 5.022282 TCATCACTTGCTCGATTTATCCA 57.978 39.130 0.00 0.00 0.00 3.41
2234 6610 5.614308 TCATCACTTGCTCGATTTATCCAT 58.386 37.500 0.00 0.00 0.00 3.41
2235 6611 6.057533 TCATCACTTGCTCGATTTATCCATT 58.942 36.000 0.00 0.00 0.00 3.16
2236 6612 5.991328 TCACTTGCTCGATTTATCCATTC 57.009 39.130 0.00 0.00 0.00 2.67
2237 6613 5.427378 TCACTTGCTCGATTTATCCATTCA 58.573 37.500 0.00 0.00 0.00 2.57
2238 6614 6.057533 TCACTTGCTCGATTTATCCATTCAT 58.942 36.000 0.00 0.00 0.00 2.57
2239 6615 6.017687 TCACTTGCTCGATTTATCCATTCATG 60.018 38.462 0.00 0.00 0.00 3.07
2240 6616 4.754372 TGCTCGATTTATCCATTCATGC 57.246 40.909 0.00 0.00 0.00 4.06
2241 6617 4.136051 TGCTCGATTTATCCATTCATGCA 58.864 39.130 0.00 0.00 0.00 3.96
2242 6618 4.579753 TGCTCGATTTATCCATTCATGCAA 59.420 37.500 0.00 0.00 0.00 4.08
2243 6619 5.067544 TGCTCGATTTATCCATTCATGCAAA 59.932 36.000 0.00 0.00 0.00 3.68
2244 6620 5.628193 GCTCGATTTATCCATTCATGCAAAG 59.372 40.000 0.00 0.00 0.00 2.77
2245 6621 6.698008 TCGATTTATCCATTCATGCAAAGT 57.302 33.333 0.00 0.00 0.00 2.66
2246 6622 7.520453 GCTCGATTTATCCATTCATGCAAAGTA 60.520 37.037 0.00 0.00 0.00 2.24
2247 6623 7.639039 TCGATTTATCCATTCATGCAAAGTAC 58.361 34.615 0.00 0.00 0.00 2.73
2248 6624 6.857964 CGATTTATCCATTCATGCAAAGTACC 59.142 38.462 0.00 0.00 0.00 3.34
2249 6625 6.463995 TTTATCCATTCATGCAAAGTACCC 57.536 37.500 0.00 0.00 0.00 3.69
2250 6626 2.733956 TCCATTCATGCAAAGTACCCC 58.266 47.619 0.00 0.00 0.00 4.95
2251 6627 2.042297 TCCATTCATGCAAAGTACCCCA 59.958 45.455 0.00 0.00 0.00 4.96
2252 6628 2.166254 CCATTCATGCAAAGTACCCCAC 59.834 50.000 0.00 0.00 0.00 4.61
2253 6629 2.969821 TTCATGCAAAGTACCCCACT 57.030 45.000 0.00 0.00 40.05 4.00
2263 6639 4.783560 AAGTACCCCACTTGTTTACTGT 57.216 40.909 0.00 0.00 46.01 3.55
2264 6640 4.783560 AGTACCCCACTTGTTTACTGTT 57.216 40.909 0.00 0.00 31.59 3.16
2265 6641 4.457466 AGTACCCCACTTGTTTACTGTTG 58.543 43.478 0.00 0.00 31.59 3.33
2266 6642 3.375647 ACCCCACTTGTTTACTGTTGT 57.624 42.857 0.00 0.00 0.00 3.32
2267 6643 3.703921 ACCCCACTTGTTTACTGTTGTT 58.296 40.909 0.00 0.00 0.00 2.83
2268 6644 4.857679 ACCCCACTTGTTTACTGTTGTTA 58.142 39.130 0.00 0.00 0.00 2.41
2269 6645 5.451354 ACCCCACTTGTTTACTGTTGTTAT 58.549 37.500 0.00 0.00 0.00 1.89
2270 6646 5.533528 ACCCCACTTGTTTACTGTTGTTATC 59.466 40.000 0.00 0.00 0.00 1.75
2271 6647 5.048294 CCCCACTTGTTTACTGTTGTTATCC 60.048 44.000 0.00 0.00 0.00 2.59
2272 6648 5.048294 CCCACTTGTTTACTGTTGTTATCCC 60.048 44.000 0.00 0.00 0.00 3.85
2273 6649 5.768164 CCACTTGTTTACTGTTGTTATCCCT 59.232 40.000 0.00 0.00 0.00 4.20
2274 6650 6.072673 CCACTTGTTTACTGTTGTTATCCCTC 60.073 42.308 0.00 0.00 0.00 4.30
2275 6651 5.699458 ACTTGTTTACTGTTGTTATCCCTCG 59.301 40.000 0.00 0.00 0.00 4.63
2276 6652 4.571919 TGTTTACTGTTGTTATCCCTCGG 58.428 43.478 0.00 0.00 0.00 4.63
2277 6653 4.040706 TGTTTACTGTTGTTATCCCTCGGT 59.959 41.667 0.00 0.00 0.00 4.69
2278 6654 4.460948 TTACTGTTGTTATCCCTCGGTC 57.539 45.455 0.00 0.00 0.00 4.79
2279 6655 1.553704 ACTGTTGTTATCCCTCGGTCC 59.446 52.381 0.00 0.00 0.00 4.46
2280 6656 0.906775 TGTTGTTATCCCTCGGTCCC 59.093 55.000 0.00 0.00 0.00 4.46
2281 6657 0.906775 GTTGTTATCCCTCGGTCCCA 59.093 55.000 0.00 0.00 0.00 4.37
2282 6658 1.134491 GTTGTTATCCCTCGGTCCCAG 60.134 57.143 0.00 0.00 0.00 4.45
2283 6659 0.337082 TGTTATCCCTCGGTCCCAGA 59.663 55.000 0.00 0.00 0.00 3.86
2284 6660 0.751452 GTTATCCCTCGGTCCCAGAC 59.249 60.000 0.00 0.00 0.00 3.51
2285 6661 0.635009 TTATCCCTCGGTCCCAGACT 59.365 55.000 0.00 0.00 32.47 3.24
2286 6662 1.526315 TATCCCTCGGTCCCAGACTA 58.474 55.000 0.00 0.00 32.47 2.59
2287 6663 0.861155 ATCCCTCGGTCCCAGACTAT 59.139 55.000 0.00 0.00 32.47 2.12
2288 6664 1.526315 TCCCTCGGTCCCAGACTATA 58.474 55.000 0.00 0.00 32.47 1.31
2289 6665 1.854939 TCCCTCGGTCCCAGACTATAA 59.145 52.381 0.00 0.00 32.47 0.98
2290 6666 2.245546 TCCCTCGGTCCCAGACTATAAA 59.754 50.000 0.00 0.00 32.47 1.40
2291 6667 2.628657 CCCTCGGTCCCAGACTATAAAG 59.371 54.545 0.00 0.00 32.47 1.85
2292 6668 3.563223 CCTCGGTCCCAGACTATAAAGA 58.437 50.000 0.00 0.00 32.47 2.52
2293 6669 3.958798 CCTCGGTCCCAGACTATAAAGAA 59.041 47.826 0.00 0.00 32.47 2.52
2294 6670 4.404715 CCTCGGTCCCAGACTATAAAGAAA 59.595 45.833 0.00 0.00 32.47 2.52
2295 6671 5.070580 CCTCGGTCCCAGACTATAAAGAAAT 59.929 44.000 0.00 0.00 32.47 2.17
2296 6672 6.158023 TCGGTCCCAGACTATAAAGAAATC 57.842 41.667 0.00 0.00 32.47 2.17
2297 6673 5.659525 TCGGTCCCAGACTATAAAGAAATCA 59.340 40.000 0.00 0.00 32.47 2.57
2298 6674 5.753921 CGGTCCCAGACTATAAAGAAATCAC 59.246 44.000 0.00 0.00 32.47 3.06
2299 6675 6.629515 CGGTCCCAGACTATAAAGAAATCACA 60.630 42.308 0.00 0.00 32.47 3.58
2300 6676 7.110155 GGTCCCAGACTATAAAGAAATCACAA 58.890 38.462 0.00 0.00 32.47 3.33
2301 6677 7.775561 GGTCCCAGACTATAAAGAAATCACAAT 59.224 37.037 0.00 0.00 32.47 2.71
2302 6678 8.831550 GTCCCAGACTATAAAGAAATCACAATC 58.168 37.037 0.00 0.00 0.00 2.67
2303 6679 8.772250 TCCCAGACTATAAAGAAATCACAATCT 58.228 33.333 0.00 0.00 0.00 2.40
2313 6689 6.734104 AGAAATCACAATCTACTCAGTTGC 57.266 37.500 0.00 0.00 0.00 4.17
2314 6690 6.233434 AGAAATCACAATCTACTCAGTTGCA 58.767 36.000 0.00 0.00 0.00 4.08
2315 6691 6.712095 AGAAATCACAATCTACTCAGTTGCAA 59.288 34.615 0.00 0.00 0.00 4.08
2316 6692 6.492007 AATCACAATCTACTCAGTTGCAAG 57.508 37.500 0.00 0.00 0.00 4.01
2317 6693 4.960938 TCACAATCTACTCAGTTGCAAGT 58.039 39.130 0.00 0.00 0.00 3.16
2318 6694 5.368145 TCACAATCTACTCAGTTGCAAGTT 58.632 37.500 3.38 0.00 0.00 2.66
2319 6695 5.466728 TCACAATCTACTCAGTTGCAAGTTC 59.533 40.000 3.38 0.00 0.00 3.01
2320 6696 5.468072 CACAATCTACTCAGTTGCAAGTTCT 59.532 40.000 3.38 0.00 0.00 3.01
2321 6697 5.468072 ACAATCTACTCAGTTGCAAGTTCTG 59.532 40.000 3.38 6.63 0.00 3.02
2699 7079 9.140286 GGAGAACATATTTTCTTTAGGCAAAAC 57.860 33.333 5.62 0.00 35.90 2.43
2716 7096 5.049405 GGCAAAACTTCCGGATACATATGAG 60.049 44.000 4.15 0.00 0.00 2.90
2720 7100 9.923143 CAAAACTTCCGGATACATATGAGTATA 57.077 33.333 4.15 0.00 34.95 1.47
2933 7419 1.261480 ACATAGATAGCAGGAGGGCG 58.739 55.000 0.00 0.00 39.27 6.13
3311 7797 6.627087 TTGAACTCTGGACTATGGATTTCT 57.373 37.500 0.00 0.00 0.00 2.52
3709 8202 5.645067 TGAAATTCACTATTCCAGCTCACAG 59.355 40.000 0.00 0.00 0.00 3.66
3721 8214 2.097629 CAGCTCACAGATGCATTTCTGG 59.902 50.000 18.99 9.80 46.04 3.86
3790 8291 5.464389 AGCTTTGCTGTTTTTGCTATTTGAG 59.536 36.000 0.00 0.00 37.57 3.02
3909 8425 4.757149 ACAAAGTCCATAGTTCTGTTCTGC 59.243 41.667 0.00 0.00 0.00 4.26
4230 8746 1.684248 GCCATGCCTTTCATCCTCTGT 60.684 52.381 0.00 0.00 31.79 3.41
4485 9018 3.832490 GCCCTGTCCCTTTGTATTTTTCT 59.168 43.478 0.00 0.00 0.00 2.52
4507 9040 3.749665 ACCTGCTTATTGCTGCAAAAA 57.250 38.095 20.06 7.92 43.37 1.94
4512 9045 4.834534 TGCTTATTGCTGCAAAAATGGAT 58.165 34.783 20.06 3.32 43.37 3.41
4659 9192 2.159517 GGAATGTGTCGACAAATGGCTC 60.160 50.000 21.77 14.93 35.11 4.70
4674 9207 6.377996 ACAAATGGCTCAAGATAAATGCACTA 59.622 34.615 0.00 0.00 0.00 2.74
5189 11477 1.572447 GTTGGCACACGCGTGTAAT 59.428 52.632 41.12 19.88 45.50 1.89
5381 11819 1.527034 TGCCTGATTGTTCAGCTGTC 58.473 50.000 14.67 9.03 46.76 3.51
5502 13210 3.915437 AAAGAACTTGGTAATGTGGCG 57.085 42.857 0.00 0.00 0.00 5.69
5562 13271 4.540824 GAAGCAAAAGACACTTGGCTTAG 58.459 43.478 17.19 0.00 43.96 2.18
5593 13302 1.021968 GACAAAGTTCAGGCCACGTT 58.978 50.000 5.01 0.00 0.00 3.99
5599 13308 3.190738 TTCAGGCCACGTTCCCCAG 62.191 63.158 5.01 0.00 0.00 4.45
5610 14061 0.872388 GTTCCCCAGTTGCTTACACG 59.128 55.000 0.00 0.00 0.00 4.49
5638 14089 4.204012 CAGAGCCGGTAATCCCATTAAAA 58.796 43.478 1.90 0.00 0.00 1.52
5891 15390 7.696872 TCTCACTAATTCTCTCGTTCGTATTTG 59.303 37.037 0.00 0.00 0.00 2.32
5936 15438 1.291109 TTCCCGTCCTCTCTCTCTCT 58.709 55.000 0.00 0.00 0.00 3.10
6089 19844 4.669809 TTCGTTGGGCCCCGCAAT 62.670 61.111 22.27 0.00 38.48 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 2538 4.156008 GCACCCAACTCCTAACATTAGTTG 59.844 45.833 7.32 7.32 46.18 3.16
106 2561 6.129115 CCTGTTTTGCTGTAAAATCATCGTTG 60.129 38.462 6.92 0.00 40.17 4.10
119 2574 2.360165 CTCTTTGCTCCTGTTTTGCTGT 59.640 45.455 0.00 0.00 0.00 4.40
120 2575 2.360165 ACTCTTTGCTCCTGTTTTGCTG 59.640 45.455 0.00 0.00 0.00 4.41
124 2579 3.356290 ACACACTCTTTGCTCCTGTTTT 58.644 40.909 0.00 0.00 0.00 2.43
133 2588 3.548818 CCTGCTACAAACACACTCTTTGC 60.549 47.826 0.00 0.00 32.71 3.68
142 2597 0.041312 CACGCACCTGCTACAAACAC 60.041 55.000 0.00 0.00 39.32 3.32
171 2626 4.766891 ACCTACTACGTACCAGCTACAAAA 59.233 41.667 0.00 0.00 0.00 2.44
196 2651 8.911662 TCTCACAAAAAGAAAAAGAAAAAGTCG 58.088 29.630 0.00 0.00 0.00 4.18
208 2663 9.403583 ACCTACTATGTTTCTCACAAAAAGAAA 57.596 29.630 0.00 0.00 39.50 2.52
209 2664 8.836413 CACCTACTATGTTTCTCACAAAAAGAA 58.164 33.333 0.00 0.00 39.50 2.52
210 2665 7.990886 ACACCTACTATGTTTCTCACAAAAAGA 59.009 33.333 0.00 0.00 39.50 2.52
211 2666 8.070171 CACACCTACTATGTTTCTCACAAAAAG 58.930 37.037 0.00 0.00 39.50 2.27
212 2667 7.468084 GCACACCTACTATGTTTCTCACAAAAA 60.468 37.037 0.00 0.00 39.50 1.94
213 2668 6.017440 GCACACCTACTATGTTTCTCACAAAA 60.017 38.462 0.00 0.00 39.50 2.44
214 2669 5.468746 GCACACCTACTATGTTTCTCACAAA 59.531 40.000 0.00 0.00 39.50 2.83
215 2670 4.994852 GCACACCTACTATGTTTCTCACAA 59.005 41.667 0.00 0.00 39.50 3.33
216 2671 4.562757 GGCACACCTACTATGTTTCTCACA 60.563 45.833 0.00 0.00 40.71 3.58
217 2672 3.933332 GGCACACCTACTATGTTTCTCAC 59.067 47.826 0.00 0.00 0.00 3.51
218 2673 4.202245 GGCACACCTACTATGTTTCTCA 57.798 45.455 0.00 0.00 0.00 3.27
230 2685 8.433210 GTGAAATAACACTGTTAGGCACACCTA 61.433 40.741 17.84 0.00 41.11 3.08
231 2686 7.681862 GTGAAATAACACTGTTAGGCACACCT 61.682 42.308 17.84 0.00 42.33 4.00
232 2687 4.517453 TGAAATAACACTGTTAGGCACACC 59.483 41.667 7.67 0.00 0.00 4.16
233 2688 5.008217 TGTGAAATAACACTGTTAGGCACAC 59.992 40.000 19.78 17.87 40.87 3.82
234 2689 5.126779 TGTGAAATAACACTGTTAGGCACA 58.873 37.500 19.78 19.78 40.87 4.57
235 2690 5.238650 ACTGTGAAATAACACTGTTAGGCAC 59.761 40.000 16.81 16.81 45.57 5.01
236 2691 5.373222 ACTGTGAAATAACACTGTTAGGCA 58.627 37.500 7.67 3.27 45.57 4.75
237 2692 5.941948 ACTGTGAAATAACACTGTTAGGC 57.058 39.130 7.67 1.00 45.57 3.93
238 2693 9.878599 CTTTTACTGTGAAATAACACTGTTAGG 57.121 33.333 14.19 3.84 45.57 2.69
241 2696 9.391006 TCTCTTTTACTGTGAAATAACACTGTT 57.609 29.630 14.19 0.00 45.57 3.16
243 2698 9.046296 ACTCTCTTTTACTGTGAAATAACACTG 57.954 33.333 0.00 0.00 42.51 3.66
244 2699 9.262358 GACTCTCTTTTACTGTGAAATAACACT 57.738 33.333 0.00 0.00 40.87 3.55
245 2700 9.042008 TGACTCTCTTTTACTGTGAAATAACAC 57.958 33.333 0.00 0.00 40.68 3.32
246 2701 9.042008 GTGACTCTCTTTTACTGTGAAATAACA 57.958 33.333 0.00 0.00 0.00 2.41
247 2702 9.262358 AGTGACTCTCTTTTACTGTGAAATAAC 57.738 33.333 0.00 0.00 0.00 1.89
284 2739 1.246737 TTGTGTGTGCAGTGTGGCAA 61.247 50.000 0.00 0.00 46.93 4.52
290 2745 1.269206 GGGAACATTGTGTGTGCAGTG 60.269 52.381 0.00 0.00 41.14 3.66
292 2747 0.040157 CGGGAACATTGTGTGTGCAG 60.040 55.000 0.00 0.00 41.14 4.41
293 2748 0.749818 ACGGGAACATTGTGTGTGCA 60.750 50.000 0.00 0.00 41.14 4.57
299 2754 4.503741 AGAATTTGACGGGAACATTGTG 57.496 40.909 0.00 0.00 0.00 3.33
300 2755 6.642707 TTTAGAATTTGACGGGAACATTGT 57.357 33.333 0.00 0.00 0.00 2.71
339 2794 4.582656 TGATGACGGGAACATTGTCTTTTT 59.417 37.500 0.00 0.00 33.81 1.94
340 2795 4.141287 TGATGACGGGAACATTGTCTTTT 58.859 39.130 0.00 0.00 33.81 2.27
341 2796 3.750371 TGATGACGGGAACATTGTCTTT 58.250 40.909 0.00 0.00 33.81 2.52
342 2797 3.417069 TGATGACGGGAACATTGTCTT 57.583 42.857 0.00 0.00 33.81 3.01
343 2798 3.634397 ATGATGACGGGAACATTGTCT 57.366 42.857 0.00 0.00 33.81 3.41
344 2799 3.248602 GCTATGATGACGGGAACATTGTC 59.751 47.826 0.00 0.00 0.00 3.18
345 2800 3.206150 GCTATGATGACGGGAACATTGT 58.794 45.455 0.00 0.00 0.00 2.71
346 2801 3.205338 TGCTATGATGACGGGAACATTG 58.795 45.455 0.00 0.00 0.00 2.82
347 2802 3.558931 TGCTATGATGACGGGAACATT 57.441 42.857 0.00 0.00 0.00 2.71
348 2803 3.558931 TTGCTATGATGACGGGAACAT 57.441 42.857 0.00 0.00 0.00 2.71
349 2804 3.558931 ATTGCTATGATGACGGGAACA 57.441 42.857 0.00 0.00 0.00 3.18
350 2805 6.560253 AAATATTGCTATGATGACGGGAAC 57.440 37.500 0.00 0.00 0.00 3.62
351 2806 7.068103 ACAAAAATATTGCTATGATGACGGGAA 59.932 33.333 0.00 0.00 0.00 3.97
352 2807 6.545666 ACAAAAATATTGCTATGATGACGGGA 59.454 34.615 0.00 0.00 0.00 5.14
353 2808 6.738114 ACAAAAATATTGCTATGATGACGGG 58.262 36.000 0.00 0.00 0.00 5.28
354 2809 8.341903 TGTACAAAAATATTGCTATGATGACGG 58.658 33.333 0.00 0.00 0.00 4.79
355 2810 9.373750 CTGTACAAAAATATTGCTATGATGACG 57.626 33.333 0.00 0.00 0.00 4.35
376 2831 5.648572 ACGCTAGTACTTCCATTTCTGTAC 58.351 41.667 0.00 0.00 36.48 2.90
378 2833 4.381718 GGACGCTAGTACTTCCATTTCTGT 60.382 45.833 0.00 0.00 0.00 3.41
379 2834 4.113354 GGACGCTAGTACTTCCATTTCTG 58.887 47.826 0.00 0.00 0.00 3.02
380 2835 3.132467 GGGACGCTAGTACTTCCATTTCT 59.868 47.826 12.36 0.00 29.66 2.52
381 2836 3.132467 AGGGACGCTAGTACTTCCATTTC 59.868 47.826 12.36 0.00 29.66 2.17
397 2852 5.941948 AGTTTTGACATTAAGAAGGGACG 57.058 39.130 0.00 0.00 0.00 4.79
455 2910 9.218440 TCGTCACCGATTAGTGTAATATATACA 57.782 33.333 0.00 0.00 38.40 2.29
525 3013 2.224426 TGACGCAACAGTATTGGAAGGT 60.224 45.455 0.00 0.00 0.00 3.50
526 3014 2.416547 CTGACGCAACAGTATTGGAAGG 59.583 50.000 0.00 0.00 33.73 3.46
527 3015 2.159653 GCTGACGCAACAGTATTGGAAG 60.160 50.000 8.54 0.00 39.73 3.46
685 4990 2.801111 AGAAAAGAAAACCGAGAGCGTC 59.199 45.455 0.00 0.00 35.23 5.19
710 5015 0.032130 GGAGAACGTGTGCTGTCTCA 59.968 55.000 13.19 0.00 0.00 3.27
1329 5647 0.966370 GGACAGACAGCCGGTACTCT 60.966 60.000 1.90 0.00 0.00 3.24
1408 5726 0.536460 AAACAAATCGCACGGGAGGT 60.536 50.000 0.00 0.00 0.00 3.85
1409 5727 0.109781 CAAACAAATCGCACGGGAGG 60.110 55.000 0.00 0.00 0.00 4.30
1460 5780 2.612972 CGTATCAACACAAGAGCCACCT 60.613 50.000 0.00 0.00 0.00 4.00
1468 5788 0.999406 CGAGGGCGTATCAACACAAG 59.001 55.000 0.00 0.00 0.00 3.16
1488 5808 0.824109 TTCTCGCAGATCCGGTCAAT 59.176 50.000 0.00 0.00 33.89 2.57
1561 5881 1.601903 GATCGCCGCAAATTACCATGA 59.398 47.619 0.00 0.00 0.00 3.07
1564 5884 1.400142 CAAGATCGCCGCAAATTACCA 59.600 47.619 0.00 0.00 0.00 3.25
1585 5905 8.905850 TCAACTACACGGTGACATAAGATATTA 58.094 33.333 16.29 0.00 0.00 0.98
1651 5987 7.736893 AGACTGACTAAAACTAACCACAGATT 58.263 34.615 0.00 0.00 0.00 2.40
1662 5998 7.657761 CAGTACCAATGAAGACTGACTAAAACT 59.342 37.037 3.97 0.00 41.51 2.66
1675 6011 7.651304 TGCATAAACAAAACAGTACCAATGAAG 59.349 33.333 0.00 0.00 0.00 3.02
1682 6018 5.925969 AGCAATGCATAAACAAAACAGTACC 59.074 36.000 8.35 0.00 0.00 3.34
1684 6020 6.511416 ACAGCAATGCATAAACAAAACAGTA 58.489 32.000 8.35 0.00 0.00 2.74
1722 6058 4.037222 TGATCCAAATAGGCACCACTAGA 58.963 43.478 0.00 0.00 37.29 2.43
1729 6065 2.555757 GGAGCATGATCCAAATAGGCAC 59.444 50.000 25.01 0.00 39.34 5.01
1755 6092 2.028484 TCACGTTCGTGTGAGCCC 59.972 61.111 21.61 0.00 43.62 5.19
1817 6154 6.423905 TGCAAGCTATAGAGGCGTAATTAAAG 59.576 38.462 3.21 0.00 34.52 1.85
1826 6163 2.225019 CCAAATGCAAGCTATAGAGGCG 59.775 50.000 3.21 0.00 34.52 5.52
1835 6172 0.171903 CTAAGCGCCAAATGCAAGCT 59.828 50.000 2.29 0.00 41.33 3.74
1848 6185 6.120812 CGCTATAAGCTAAACAAACTAAGCG 58.879 40.000 0.00 0.00 39.60 4.68
1850 6187 7.535489 ACCGCTATAAGCTAAACAAACTAAG 57.465 36.000 0.00 0.00 39.60 2.18
1867 6204 2.928801 TCATGCCAACATACCGCTAT 57.071 45.000 0.00 0.00 33.67 2.97
1873 6210 7.510549 ACCATAGTTTATCATGCCAACATAC 57.489 36.000 0.00 0.00 33.67 2.39
1893 6230 8.461222 CACAACATCACAATTCACTAATACCAT 58.539 33.333 0.00 0.00 0.00 3.55
1907 6244 1.818060 GGCCATAGCACAACATCACAA 59.182 47.619 0.00 0.00 42.56 3.33
1931 6276 6.613271 ACATACACTGAGGTAGAAAGGATCAT 59.387 38.462 0.00 0.00 0.00 2.45
1941 6286 7.348080 TCCAAATAGACATACACTGAGGTAG 57.652 40.000 0.00 0.00 0.00 3.18
1944 6289 6.484643 CCAATCCAAATAGACATACACTGAGG 59.515 42.308 0.00 0.00 0.00 3.86
1958 6303 9.707957 ACATAACAATAAGGTCCAATCCAAATA 57.292 29.630 0.00 0.00 0.00 1.40
1959 6304 8.477256 CACATAACAATAAGGTCCAATCCAAAT 58.523 33.333 0.00 0.00 0.00 2.32
1961 6306 6.379703 CCACATAACAATAAGGTCCAATCCAA 59.620 38.462 0.00 0.00 0.00 3.53
1963 6308 5.891551 ACCACATAACAATAAGGTCCAATCC 59.108 40.000 0.00 0.00 0.00 3.01
1964 6309 7.122055 TGAACCACATAACAATAAGGTCCAATC 59.878 37.037 0.00 0.00 0.00 2.67
1965 6310 6.951198 TGAACCACATAACAATAAGGTCCAAT 59.049 34.615 0.00 0.00 0.00 3.16
1966 6311 6.307776 TGAACCACATAACAATAAGGTCCAA 58.692 36.000 0.00 0.00 0.00 3.53
1967 6312 5.882040 TGAACCACATAACAATAAGGTCCA 58.118 37.500 0.00 0.00 0.00 4.02
1968 6313 6.433093 AGTTGAACCACATAACAATAAGGTCC 59.567 38.462 0.00 0.00 0.00 4.46
1969 6314 7.448748 AGTTGAACCACATAACAATAAGGTC 57.551 36.000 0.00 0.00 0.00 3.85
1970 6315 8.161425 ACTAGTTGAACCACATAACAATAAGGT 58.839 33.333 0.00 0.00 0.00 3.50
1971 6316 8.450964 CACTAGTTGAACCACATAACAATAAGG 58.549 37.037 0.00 0.00 0.00 2.69
1972 6317 8.999431 ACACTAGTTGAACCACATAACAATAAG 58.001 33.333 0.00 0.00 0.00 1.73
1973 6318 8.779303 CACACTAGTTGAACCACATAACAATAA 58.221 33.333 0.00 0.00 0.00 1.40
1974 6319 7.389330 CCACACTAGTTGAACCACATAACAATA 59.611 37.037 0.00 0.00 0.00 1.90
1975 6320 6.206634 CCACACTAGTTGAACCACATAACAAT 59.793 38.462 0.00 0.00 0.00 2.71
1976 6321 5.529430 CCACACTAGTTGAACCACATAACAA 59.471 40.000 0.00 0.00 0.00 2.83
1977 6322 5.060506 CCACACTAGTTGAACCACATAACA 58.939 41.667 0.00 0.00 0.00 2.41
2036 6412 7.807977 ATAGACAACAACATCAAACTCAAGT 57.192 32.000 0.00 0.00 0.00 3.16
2129 6505 1.419762 TGGCTTAGCACAGGTTCAGAA 59.580 47.619 6.53 0.00 0.00 3.02
2131 6507 1.160137 GTGGCTTAGCACAGGTTCAG 58.840 55.000 6.53 0.00 0.00 3.02
2142 6518 2.092968 TGAAGCTATGTGGGTGGCTTAG 60.093 50.000 0.00 0.00 44.53 2.18
2144 6520 0.698238 TGAAGCTATGTGGGTGGCTT 59.302 50.000 0.00 0.00 46.73 4.35
2145 6521 0.921896 ATGAAGCTATGTGGGTGGCT 59.078 50.000 0.00 0.00 37.55 4.75
2146 6522 2.158755 AGTATGAAGCTATGTGGGTGGC 60.159 50.000 0.00 0.00 0.00 5.01
2147 6523 3.118261 ACAGTATGAAGCTATGTGGGTGG 60.118 47.826 0.00 0.00 39.69 4.61
2148 6524 4.142609 ACAGTATGAAGCTATGTGGGTG 57.857 45.455 0.00 0.00 39.69 4.61
2149 6525 4.517285 CAACAGTATGAAGCTATGTGGGT 58.483 43.478 0.00 0.00 39.69 4.51
2150 6526 3.879295 CCAACAGTATGAAGCTATGTGGG 59.121 47.826 0.00 0.00 39.69 4.61
2151 6527 3.313526 GCCAACAGTATGAAGCTATGTGG 59.686 47.826 0.00 0.00 39.69 4.17
2152 6528 4.194640 AGCCAACAGTATGAAGCTATGTG 58.805 43.478 0.00 0.00 39.69 3.21
2153 6529 4.494091 AGCCAACAGTATGAAGCTATGT 57.506 40.909 0.00 0.00 39.69 2.29
2154 6530 8.663025 CATTATAGCCAACAGTATGAAGCTATG 58.337 37.037 11.52 0.00 44.89 2.23
2155 6531 8.597167 TCATTATAGCCAACAGTATGAAGCTAT 58.403 33.333 7.41 7.41 45.99 2.97
2156 6532 7.872993 GTCATTATAGCCAACAGTATGAAGCTA 59.127 37.037 0.00 0.00 42.26 3.32
2157 6533 6.708054 GTCATTATAGCCAACAGTATGAAGCT 59.292 38.462 0.00 0.00 39.69 3.74
2158 6534 6.483307 TGTCATTATAGCCAACAGTATGAAGC 59.517 38.462 0.00 0.00 39.69 3.86
2159 6535 8.338259 GTTGTCATTATAGCCAACAGTATGAAG 58.662 37.037 0.00 0.00 39.69 3.02
2160 6536 8.046708 AGTTGTCATTATAGCCAACAGTATGAA 58.953 33.333 0.00 0.00 39.69 2.57
2161 6537 7.564793 AGTTGTCATTATAGCCAACAGTATGA 58.435 34.615 0.00 0.00 39.69 2.15
2162 6538 7.792374 AGTTGTCATTATAGCCAACAGTATG 57.208 36.000 0.00 0.00 46.00 2.39
2163 6539 8.807948 AAAGTTGTCATTATAGCCAACAGTAT 57.192 30.769 0.00 0.00 39.63 2.12
2164 6540 9.899661 ATAAAGTTGTCATTATAGCCAACAGTA 57.100 29.630 0.00 0.00 39.63 2.74
2165 6541 8.677300 CATAAAGTTGTCATTATAGCCAACAGT 58.323 33.333 0.00 0.00 39.63 3.55
2166 6542 7.645340 GCATAAAGTTGTCATTATAGCCAACAG 59.355 37.037 0.00 0.00 39.63 3.16
2167 6543 7.339212 AGCATAAAGTTGTCATTATAGCCAACA 59.661 33.333 0.00 0.00 39.63 3.33
2168 6544 7.645340 CAGCATAAAGTTGTCATTATAGCCAAC 59.355 37.037 0.00 0.00 37.93 3.77
2169 6545 7.339212 ACAGCATAAAGTTGTCATTATAGCCAA 59.661 33.333 0.00 0.00 37.00 4.52
2170 6546 6.828273 ACAGCATAAAGTTGTCATTATAGCCA 59.172 34.615 0.00 0.00 37.00 4.75
2171 6547 7.264373 ACAGCATAAAGTTGTCATTATAGCC 57.736 36.000 0.00 0.00 37.00 3.93
2172 6548 8.616076 AGAACAGCATAAAGTTGTCATTATAGC 58.384 33.333 0.00 0.00 41.13 2.97
2175 6551 8.604035 CGTAGAACAGCATAAAGTTGTCATTAT 58.396 33.333 0.00 0.00 41.13 1.28
2176 6552 7.412563 GCGTAGAACAGCATAAAGTTGTCATTA 60.413 37.037 0.00 0.00 41.13 1.90
2177 6553 6.620733 GCGTAGAACAGCATAAAGTTGTCATT 60.621 38.462 0.00 0.00 41.13 2.57
2178 6554 5.163854 GCGTAGAACAGCATAAAGTTGTCAT 60.164 40.000 0.00 0.00 41.13 3.06
2179 6555 4.151689 GCGTAGAACAGCATAAAGTTGTCA 59.848 41.667 0.00 0.00 41.13 3.58
2180 6556 4.638963 GCGTAGAACAGCATAAAGTTGTC 58.361 43.478 0.00 0.00 41.13 3.18
2181 6557 3.122948 CGCGTAGAACAGCATAAAGTTGT 59.877 43.478 0.00 0.00 44.12 3.32
2182 6558 3.366724 TCGCGTAGAACAGCATAAAGTTG 59.633 43.478 5.77 0.00 34.20 3.16
2183 6559 3.367025 GTCGCGTAGAACAGCATAAAGTT 59.633 43.478 5.77 0.00 0.00 2.66
2184 6560 2.921754 GTCGCGTAGAACAGCATAAAGT 59.078 45.455 5.77 0.00 0.00 2.66
2185 6561 2.035674 CGTCGCGTAGAACAGCATAAAG 60.036 50.000 5.77 0.00 0.00 1.85
2186 6562 1.915350 CGTCGCGTAGAACAGCATAAA 59.085 47.619 5.77 0.00 0.00 1.40
2187 6563 1.541475 CGTCGCGTAGAACAGCATAA 58.459 50.000 5.77 0.00 0.00 1.90
2188 6564 0.248336 CCGTCGCGTAGAACAGCATA 60.248 55.000 5.77 0.00 0.00 3.14
2189 6565 1.516386 CCGTCGCGTAGAACAGCAT 60.516 57.895 5.77 0.00 0.00 3.79
2190 6566 2.126618 CCGTCGCGTAGAACAGCA 60.127 61.111 5.77 0.00 0.00 4.41
2191 6567 2.807631 TTCCCGTCGCGTAGAACAGC 62.808 60.000 5.77 0.00 0.00 4.40
2192 6568 0.179145 ATTCCCGTCGCGTAGAACAG 60.179 55.000 5.77 0.00 0.00 3.16
2193 6569 0.179156 GATTCCCGTCGCGTAGAACA 60.179 55.000 5.77 0.00 0.00 3.18
2194 6570 0.179156 TGATTCCCGTCGCGTAGAAC 60.179 55.000 5.77 0.00 0.00 3.01
2195 6571 0.742505 ATGATTCCCGTCGCGTAGAA 59.257 50.000 5.77 5.67 0.00 2.10
2196 6572 0.309922 GATGATTCCCGTCGCGTAGA 59.690 55.000 5.77 0.00 0.00 2.59
2197 6573 0.030235 TGATGATTCCCGTCGCGTAG 59.970 55.000 5.77 0.59 33.46 3.51
2198 6574 0.248743 GTGATGATTCCCGTCGCGTA 60.249 55.000 5.77 0.00 32.34 4.42
2199 6575 1.518572 GTGATGATTCCCGTCGCGT 60.519 57.895 5.77 0.00 32.34 6.01
2200 6576 0.806102 AAGTGATGATTCCCGTCGCG 60.806 55.000 0.00 0.00 44.04 5.87
2201 6577 0.652592 CAAGTGATGATTCCCGTCGC 59.347 55.000 0.00 0.00 40.66 5.19
2202 6578 0.652592 GCAAGTGATGATTCCCGTCG 59.347 55.000 0.00 0.00 33.46 5.12
2203 6579 1.936547 GAGCAAGTGATGATTCCCGTC 59.063 52.381 0.00 0.00 0.00 4.79
2204 6580 1.740380 CGAGCAAGTGATGATTCCCGT 60.740 52.381 0.00 0.00 0.00 5.28
2205 6581 0.933097 CGAGCAAGTGATGATTCCCG 59.067 55.000 0.00 0.00 0.00 5.14
2206 6582 2.315925 TCGAGCAAGTGATGATTCCC 57.684 50.000 0.00 0.00 0.00 3.97
2207 6583 4.889832 AAATCGAGCAAGTGATGATTCC 57.110 40.909 0.00 0.00 0.00 3.01
2208 6584 6.203530 TGGATAAATCGAGCAAGTGATGATTC 59.796 38.462 0.00 0.00 0.00 2.52
2209 6585 6.057533 TGGATAAATCGAGCAAGTGATGATT 58.942 36.000 0.00 0.00 0.00 2.57
2210 6586 5.614308 TGGATAAATCGAGCAAGTGATGAT 58.386 37.500 0.00 0.00 0.00 2.45
2211 6587 5.022282 TGGATAAATCGAGCAAGTGATGA 57.978 39.130 0.00 0.00 0.00 2.92
2212 6588 5.936686 ATGGATAAATCGAGCAAGTGATG 57.063 39.130 0.00 0.00 0.00 3.07
2213 6589 6.057533 TGAATGGATAAATCGAGCAAGTGAT 58.942 36.000 0.00 0.00 0.00 3.06
2214 6590 5.427378 TGAATGGATAAATCGAGCAAGTGA 58.573 37.500 0.00 0.00 0.00 3.41
2215 6591 5.739752 TGAATGGATAAATCGAGCAAGTG 57.260 39.130 0.00 0.00 0.00 3.16
2216 6592 5.278169 GCATGAATGGATAAATCGAGCAAGT 60.278 40.000 0.00 0.00 0.00 3.16
2217 6593 5.152097 GCATGAATGGATAAATCGAGCAAG 58.848 41.667 0.00 0.00 0.00 4.01
2218 6594 4.579753 TGCATGAATGGATAAATCGAGCAA 59.420 37.500 0.00 0.00 0.00 3.91
2219 6595 4.136051 TGCATGAATGGATAAATCGAGCA 58.864 39.130 0.00 0.00 0.00 4.26
2220 6596 4.754372 TGCATGAATGGATAAATCGAGC 57.246 40.909 0.00 0.00 0.00 5.03
2221 6597 6.732154 ACTTTGCATGAATGGATAAATCGAG 58.268 36.000 0.00 0.00 0.00 4.04
2222 6598 6.698008 ACTTTGCATGAATGGATAAATCGA 57.302 33.333 0.00 0.00 0.00 3.59
2223 6599 6.857964 GGTACTTTGCATGAATGGATAAATCG 59.142 38.462 0.00 0.00 0.00 3.34
2224 6600 7.147976 GGGTACTTTGCATGAATGGATAAATC 58.852 38.462 0.00 0.00 0.00 2.17
2225 6601 6.041979 GGGGTACTTTGCATGAATGGATAAAT 59.958 38.462 0.00 0.00 0.00 1.40
2226 6602 5.362430 GGGGTACTTTGCATGAATGGATAAA 59.638 40.000 0.00 0.00 0.00 1.40
2227 6603 4.892934 GGGGTACTTTGCATGAATGGATAA 59.107 41.667 0.00 0.00 0.00 1.75
2228 6604 4.079500 TGGGGTACTTTGCATGAATGGATA 60.080 41.667 0.00 0.00 0.00 2.59
2229 6605 3.299503 GGGGTACTTTGCATGAATGGAT 58.700 45.455 0.00 0.00 0.00 3.41
2230 6606 2.042297 TGGGGTACTTTGCATGAATGGA 59.958 45.455 0.00 0.00 0.00 3.41
2231 6607 2.166254 GTGGGGTACTTTGCATGAATGG 59.834 50.000 0.00 0.00 0.00 3.16
2232 6608 3.091545 AGTGGGGTACTTTGCATGAATG 58.908 45.455 0.00 0.00 35.67 2.67
2233 6609 3.456380 AGTGGGGTACTTTGCATGAAT 57.544 42.857 0.00 0.00 35.67 2.57
2234 6610 2.969821 AGTGGGGTACTTTGCATGAA 57.030 45.000 0.00 0.00 35.67 2.57
2243 6619 4.080186 ACAACAGTAAACAAGTGGGGTACT 60.080 41.667 0.00 0.00 42.89 2.73
2244 6620 4.201657 ACAACAGTAAACAAGTGGGGTAC 58.798 43.478 0.00 0.00 32.29 3.34
2245 6621 4.506937 ACAACAGTAAACAAGTGGGGTA 57.493 40.909 0.00 0.00 32.29 3.69
2246 6622 3.375647 ACAACAGTAAACAAGTGGGGT 57.624 42.857 0.00 0.00 32.29 4.95
2247 6623 5.048294 GGATAACAACAGTAAACAAGTGGGG 60.048 44.000 0.00 0.00 32.29 4.96
2248 6624 5.048294 GGGATAACAACAGTAAACAAGTGGG 60.048 44.000 0.00 0.00 32.29 4.61
2249 6625 5.768164 AGGGATAACAACAGTAAACAAGTGG 59.232 40.000 0.00 0.00 32.29 4.00
2250 6626 6.347402 CGAGGGATAACAACAGTAAACAAGTG 60.347 42.308 0.00 0.00 34.42 3.16
2251 6627 5.699458 CGAGGGATAACAACAGTAAACAAGT 59.301 40.000 0.00 0.00 0.00 3.16
2252 6628 5.121768 CCGAGGGATAACAACAGTAAACAAG 59.878 44.000 0.00 0.00 0.00 3.16
2253 6629 4.998672 CCGAGGGATAACAACAGTAAACAA 59.001 41.667 0.00 0.00 0.00 2.83
2254 6630 4.040706 ACCGAGGGATAACAACAGTAAACA 59.959 41.667 0.00 0.00 0.00 2.83
2255 6631 4.572909 ACCGAGGGATAACAACAGTAAAC 58.427 43.478 0.00 0.00 0.00 2.01
2256 6632 4.322953 GGACCGAGGGATAACAACAGTAAA 60.323 45.833 0.00 0.00 0.00 2.01
2257 6633 3.196254 GGACCGAGGGATAACAACAGTAA 59.804 47.826 0.00 0.00 0.00 2.24
2258 6634 2.762327 GGACCGAGGGATAACAACAGTA 59.238 50.000 0.00 0.00 0.00 2.74
2259 6635 1.553704 GGACCGAGGGATAACAACAGT 59.446 52.381 0.00 0.00 0.00 3.55
2260 6636 1.134491 GGGACCGAGGGATAACAACAG 60.134 57.143 0.00 0.00 0.00 3.16
2261 6637 0.906775 GGGACCGAGGGATAACAACA 59.093 55.000 0.00 0.00 0.00 3.33
2262 6638 0.906775 TGGGACCGAGGGATAACAAC 59.093 55.000 0.00 0.00 0.00 3.32
2263 6639 1.200519 CTGGGACCGAGGGATAACAA 58.799 55.000 0.00 0.00 0.00 2.83
2264 6640 0.337082 TCTGGGACCGAGGGATAACA 59.663 55.000 3.39 0.00 0.00 2.41
2265 6641 0.751452 GTCTGGGACCGAGGGATAAC 59.249 60.000 3.39 0.00 0.00 1.89
2266 6642 0.635009 AGTCTGGGACCGAGGGATAA 59.365 55.000 3.39 0.00 32.18 1.75
2267 6643 1.526315 TAGTCTGGGACCGAGGGATA 58.474 55.000 3.39 0.00 32.18 2.59
2268 6644 0.861155 ATAGTCTGGGACCGAGGGAT 59.139 55.000 3.39 0.00 32.18 3.85
2269 6645 1.526315 TATAGTCTGGGACCGAGGGA 58.474 55.000 3.39 0.00 32.18 4.20
2270 6646 2.376695 TTATAGTCTGGGACCGAGGG 57.623 55.000 3.39 0.00 32.18 4.30
2271 6647 3.563223 TCTTTATAGTCTGGGACCGAGG 58.437 50.000 3.39 0.00 32.18 4.63
2272 6648 5.593679 TTTCTTTATAGTCTGGGACCGAG 57.406 43.478 0.00 0.00 32.18 4.63
2273 6649 5.659525 TGATTTCTTTATAGTCTGGGACCGA 59.340 40.000 0.00 0.00 32.18 4.69
2274 6650 5.753921 GTGATTTCTTTATAGTCTGGGACCG 59.246 44.000 0.00 0.00 32.18 4.79
2275 6651 6.650120 TGTGATTTCTTTATAGTCTGGGACC 58.350 40.000 0.00 0.00 32.18 4.46
2276 6652 8.738645 ATTGTGATTTCTTTATAGTCTGGGAC 57.261 34.615 0.00 0.00 0.00 4.46
2277 6653 8.772250 AGATTGTGATTTCTTTATAGTCTGGGA 58.228 33.333 0.00 0.00 0.00 4.37
2278 6654 8.970859 AGATTGTGATTTCTTTATAGTCTGGG 57.029 34.615 0.00 0.00 0.00 4.45
2287 6663 8.721478 GCAACTGAGTAGATTGTGATTTCTTTA 58.279 33.333 0.00 0.00 0.00 1.85
2288 6664 7.229306 TGCAACTGAGTAGATTGTGATTTCTTT 59.771 33.333 0.00 0.00 0.00 2.52
2289 6665 6.712095 TGCAACTGAGTAGATTGTGATTTCTT 59.288 34.615 0.00 0.00 0.00 2.52
2290 6666 6.233434 TGCAACTGAGTAGATTGTGATTTCT 58.767 36.000 0.00 0.00 0.00 2.52
2291 6667 6.486253 TGCAACTGAGTAGATTGTGATTTC 57.514 37.500 0.00 0.00 0.00 2.17
2292 6668 6.488006 ACTTGCAACTGAGTAGATTGTGATTT 59.512 34.615 0.00 0.00 0.00 2.17
2293 6669 6.000219 ACTTGCAACTGAGTAGATTGTGATT 59.000 36.000 0.00 0.00 0.00 2.57
2294 6670 5.555017 ACTTGCAACTGAGTAGATTGTGAT 58.445 37.500 0.00 0.00 0.00 3.06
2295 6671 4.960938 ACTTGCAACTGAGTAGATTGTGA 58.039 39.130 0.00 0.00 0.00 3.58
2296 6672 5.468072 AGAACTTGCAACTGAGTAGATTGTG 59.532 40.000 0.00 0.00 0.00 3.33
2297 6673 5.468072 CAGAACTTGCAACTGAGTAGATTGT 59.532 40.000 9.37 0.00 34.07 2.71
2298 6674 5.698089 TCAGAACTTGCAACTGAGTAGATTG 59.302 40.000 12.77 0.43 36.04 2.67
2299 6675 5.858381 TCAGAACTTGCAACTGAGTAGATT 58.142 37.500 12.77 0.00 36.04 2.40
2300 6676 5.474578 TCAGAACTTGCAACTGAGTAGAT 57.525 39.130 12.77 0.00 36.04 1.98
2301 6677 4.937201 TCAGAACTTGCAACTGAGTAGA 57.063 40.909 12.77 0.00 36.04 2.59
2302 6678 4.450419 CCTTCAGAACTTGCAACTGAGTAG 59.550 45.833 15.37 11.95 40.82 2.57
2303 6679 4.380531 CCTTCAGAACTTGCAACTGAGTA 58.619 43.478 15.37 4.67 40.82 2.59
2304 6680 3.209410 CCTTCAGAACTTGCAACTGAGT 58.791 45.455 15.37 0.98 40.82 3.41
2305 6681 2.031333 GCCTTCAGAACTTGCAACTGAG 60.031 50.000 15.37 8.62 40.82 3.35
2306 6682 1.949525 GCCTTCAGAACTTGCAACTGA 59.050 47.619 12.77 12.77 38.61 3.41
2307 6683 1.334419 CGCCTTCAGAACTTGCAACTG 60.334 52.381 8.81 8.81 0.00 3.16
2308 6684 0.947244 CGCCTTCAGAACTTGCAACT 59.053 50.000 0.00 0.00 0.00 3.16
2309 6685 0.040067 CCGCCTTCAGAACTTGCAAC 60.040 55.000 0.00 0.00 0.00 4.17
2310 6686 0.465460 ACCGCCTTCAGAACTTGCAA 60.465 50.000 0.00 0.00 0.00 4.08
2311 6687 1.148273 ACCGCCTTCAGAACTTGCA 59.852 52.632 0.00 0.00 0.00 4.08
2312 6688 0.884704 TCACCGCCTTCAGAACTTGC 60.885 55.000 0.00 0.00 0.00 4.01
2313 6689 1.466167 CATCACCGCCTTCAGAACTTG 59.534 52.381 0.00 0.00 0.00 3.16
2314 6690 1.813513 CATCACCGCCTTCAGAACTT 58.186 50.000 0.00 0.00 0.00 2.66
2315 6691 0.674895 GCATCACCGCCTTCAGAACT 60.675 55.000 0.00 0.00 0.00 3.01
2316 6692 0.955428 TGCATCACCGCCTTCAGAAC 60.955 55.000 0.00 0.00 0.00 3.01
2317 6693 0.250684 TTGCATCACCGCCTTCAGAA 60.251 50.000 0.00 0.00 0.00 3.02
2318 6694 0.250684 TTTGCATCACCGCCTTCAGA 60.251 50.000 0.00 0.00 0.00 3.27
2319 6695 0.813184 ATTTGCATCACCGCCTTCAG 59.187 50.000 0.00 0.00 0.00 3.02
2320 6696 1.255882 AATTTGCATCACCGCCTTCA 58.744 45.000 0.00 0.00 0.00 3.02
2321 6697 2.682856 TCTAATTTGCATCACCGCCTTC 59.317 45.455 0.00 0.00 0.00 3.46
2734 7114 9.301153 CAAACATAATGAAACCAATAAGCTACC 57.699 33.333 0.00 0.00 0.00 3.18
2933 7419 1.142474 GCAAGCTGCCACATTTCAAC 58.858 50.000 0.00 0.00 37.42 3.18
3311 7797 7.388224 TGGCTAACATTAACGATAACTTCAACA 59.612 33.333 0.00 0.00 0.00 3.33
3709 8202 7.976135 AGTTACTATGATCCAGAAATGCATC 57.024 36.000 0.00 0.00 0.00 3.91
3790 8291 6.429385 AGCAGCATCTAGTAATATTTTCCTGC 59.571 38.462 0.00 0.00 40.60 4.85
3909 8425 6.106673 GGTTCGTATTATGACCCATCCATAG 58.893 44.000 0.00 0.00 0.00 2.23
4230 8746 3.628942 GGAGACAACAGCATATCATTGCA 59.371 43.478 0.00 0.00 45.23 4.08
4526 9059 2.922740 AAGGCAAGTCGGTAAGTGAA 57.077 45.000 0.00 0.00 0.00 3.18
4527 9060 2.922740 AAAGGCAAGTCGGTAAGTGA 57.077 45.000 0.00 0.00 0.00 3.41
4550 9083 1.283793 CAGCAAACCTGGAAGCACG 59.716 57.895 0.00 0.00 37.93 5.34
4644 9177 2.542020 TCTTGAGCCATTTGTCGACA 57.458 45.000 15.76 15.76 0.00 4.35
4674 9207 1.980772 GGCTTTGCACAGAGGGCAT 60.981 57.895 3.47 0.00 41.58 4.40
5000 10764 0.396695 CTGGGCCAGCATTTCTCCAT 60.397 55.000 22.68 0.00 0.00 3.41
5189 11477 2.914756 TAGACCATCCTACGCCGCCA 62.915 60.000 0.00 0.00 0.00 5.69
5381 11819 1.393539 CCGTGAATTTACACTCGGCAG 59.606 52.381 0.95 0.00 38.47 4.85
5502 13210 6.774354 TTTAACCAGACACTCGACAAATAC 57.226 37.500 0.00 0.00 0.00 1.89
5562 13271 2.027625 CTTTGTCGAGCCACCCGTC 61.028 63.158 0.00 0.00 0.00 4.79
5593 13302 0.250124 CACGTGTAAGCAACTGGGGA 60.250 55.000 7.58 0.00 0.00 4.81
5599 13308 1.798223 TCTGCATCACGTGTAAGCAAC 59.202 47.619 24.10 8.44 34.45 4.17
5610 14061 1.221414 GATTACCGGCTCTGCATCAC 58.779 55.000 0.00 0.00 0.00 3.06
5690 14159 4.024893 CCGCTTATACCTGTAACTGCATTG 60.025 45.833 0.00 0.00 0.00 2.82
5936 15438 2.058705 TGATGTGGGAAAGTGGTGGTA 58.941 47.619 0.00 0.00 0.00 3.25
5966 15468 6.139048 TGGTGTAAAGAGTAAAAAGCCAAC 57.861 37.500 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.