AutoCloner

Multiple sequence alignment - TraesCS6D01G328500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G328500	chr6D	100.000	3113	0	0	1	3113	433260024	433256912	0.000000e+00	5749.0
1	TraesCS6D01G328500	chr6D	90.969	2580	182	20	34	2598	432915301	432912758	0.000000e+00	3426.0
2	TraesCS6D01G328500	chr6D	88.624	1890	193	9	705	2580	432931727	432929846	0.000000e+00	2279.0
3	TraesCS6D01G328500	chr6D	89.982	1667	148	9	704	2356	433280875	433279214	0.000000e+00	2135.0
4	TraesCS6D01G328500	chr6D	88.616	571	58	5	2071	2639	433037324	433036759	0.000000e+00	688.0
5	TraesCS6D01G328500	chr6D	80.752	452	77	10	139	583	432932317	432931869	8.270000e-91	344.0
6	TraesCS6D01G328500	chr6D	78.261	276	20	26	2846	3111	433277934	433277689	1.160000e-29	141.0
7	TraesCS6D01G328500	chr6D	82.222	135	18	3	2846	2979	432911588	432911459	9.130000e-21	111.0
8	TraesCS6D01G328500	chr6B	92.814	2797	147	22	1	2770	653716543	653713774	0.000000e+00	4002.0
9	TraesCS6D01G328500	chr6B	92.658	2792	144	27	1	2770	653789673	653786921	0.000000e+00	3964.0
10	TraesCS6D01G328500	chr6B	95.730	2178	82	9	1	2171	653195720	653193547	0.000000e+00	3496.0
11	TraesCS6D01G328500	chr6B	89.213	2642	217	27	1	2619	653857421	653854825	0.000000e+00	3238.0
12	TraesCS6D01G328500	chr6B	89.622	1667	154	9	704	2356	653872848	653871187	0.000000e+00	2102.0
13	TraesCS6D01G328500	chr6B	85.349	430	54	7	2170	2596	653187454	653187031	1.330000e-118	436.0
14	TraesCS6D01G328500	chr6B	76.311	515	65	36	2622	3113	653696754	653696274	4.040000e-54	222.0
15	TraesCS6D01G328500	chr6B	79.681	251	30	11	2846	3087	653186649	653186411	8.930000e-36	161.0
16	TraesCS6D01G328500	chr6B	78.671	286	23	22	2837	3113	653868373	653868117	4.160000e-34	156.0
17	TraesCS6D01G328500	chr6A	89.323	2688	209	30	2	2669	579125807	579123178	0.000000e+00	3302.0
18	TraesCS6D01G328500	chr6A	81.699	153	7	13	2629	2769	579139447	579139304	1.180000e-19	108.0
19	TraesCS6D01G328500	chr6A	92.593	54	4	0	2717	2770	579122852	579122799	9.260000e-11	78.7
20	TraesCS6D01G328500	chr7D	74.514	463	85	26	1	448	500745077	500745521	1.480000e-38	171.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G328500	chr6D	433256912	433260024	3112	True	5749.00	5749	100.0000	1	3113	1	chr6D.!!$R2	3112
1	TraesCS6D01G328500	chr6D	432911459	432915301	3842	True	1768.50	3426	86.5955	34	2979	2	chr6D.!!$R3	2945
2	TraesCS6D01G328500	chr6D	432929846	432932317	2471	True	1311.50	2279	84.6880	139	2580	2	chr6D.!!$R4	2441
3	TraesCS6D01G328500	chr6D	433277689	433280875	3186	True	1138.00	2135	84.1215	704	3111	2	chr6D.!!$R5	2407
4	TraesCS6D01G328500	chr6D	433036759	433037324	565	True	688.00	688	88.6160	2071	2639	1	chr6D.!!$R1	568
5	TraesCS6D01G328500	chr6B	653713774	653716543	2769	True	4002.00	4002	92.8140	1	2770	1	chr6B.!!$R3	2769
6	TraesCS6D01G328500	chr6B	653786921	653789673	2752	True	3964.00	3964	92.6580	1	2770	1	chr6B.!!$R4	2769
7	TraesCS6D01G328500	chr6B	653193547	653195720	2173	True	3496.00	3496	95.7300	1	2171	1	chr6B.!!$R1	2170
8	TraesCS6D01G328500	chr6B	653854825	653857421	2596	True	3238.00	3238	89.2130	1	2619	1	chr6B.!!$R5	2618
9	TraesCS6D01G328500	chr6B	653868117	653872848	4731	True	1129.00	2102	84.1465	704	3113	2	chr6B.!!$R7	2409
10	TraesCS6D01G328500	chr6B	653186411	653187454	1043	True	298.50	436	82.5150	2170	3087	2	chr6B.!!$R6	917
11	TraesCS6D01G328500	chr6A	579122799	579125807	3008	True	1690.35	3302	90.9580	2	2770	2	chr6A.!!$R2	2768

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	End Stability	Orientation
171	173	0.181114	TCAGCCTTGAGTTGCAGTGT	59.819	50.0	3.55	F
172	174	1.027357	CAGCCTTGAGTTGCAGTGTT	58.973	50.0	3.32	F
1167	1229	2.037251	GGACACTACTGAGAAGGCACAA	59.963	50.0	3.33	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1167	1229	1.880027	GCCTTGAACACCTGAAATCGT	59.120	47.619	0.0	3.73	R
1270	1332	2.222027	CTTTGTCGCCTTGAACTCCTT	58.778	47.619	0.0	3.36	R
3022	6681	0.095417	GTACGACGAGTACGACACCC	59.905	60.000	45.2	4.61	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
21	22	0.603065	ATGTGTGCGTACTCTGCTCA	59.397	50.000	4.97	0.00	33.86	4.26
40	41	5.927689	TGCTCAATTCTTGCGAATGATTTTT	59.072	32.000	0.00	0.00	39.72	1.94
130	132	5.185828	TGATGTGCATAGTGTGTCTACTCTT	59.814	40.000	0.00	0.00	33.14	2.85
171	173	0.181114	TCAGCCTTGAGTTGCAGTGT	59.819	50.000	0.00	0.00	0.00	3.55
172	174	1.027357	CAGCCTTGAGTTGCAGTGTT	58.973	50.000	0.00	0.00	0.00	3.32
365	372	3.647590	TGAGGCTCATGCAGTCCATATAA	59.352	43.478	14.43	0.00	41.91	0.98
377	384	8.121305	TGCAGTCCATATAAAACAGAAAATGT	57.879	30.769	0.00	0.00	46.97	2.71
515	526	6.822667	TTATGTTCGTGTTACACTCCTAGA	57.177	37.500	13.86	0.00	31.34	2.43
755	805	7.897575	ATAGCATCGATAAAGAAATCTGTCC	57.102	36.000	0.00	0.00	0.00	4.02
1167	1229	2.037251	GGACACTACTGAGAAGGCACAA	59.963	50.000	0.00	0.00	0.00	3.33
1225	1287	3.636381	GAGTCGTTTAACACCGAGAACT	58.364	45.455	0.00	0.00	33.10	3.01
1270	1332	3.804036	CAGTTCACTGACCTAACCAACA	58.196	45.455	0.14	0.00	46.59	3.33
1734	1800	3.057736	CCGAGTCCAACTACCCATATACG	60.058	52.174	0.00	0.00	0.00	3.06
2131	2197	5.674525	CATAGAAAGAGTGTCCTATGCCAA	58.325	41.667	0.00	0.00	34.23	4.52
2143	2209	5.248477	TGTCCTATGCCAAATATCCTCCTAC	59.752	44.000	0.00	0.00	0.00	3.18
2356	2438	0.964358	GCCTCTTGTGCCTTCATGCT	60.964	55.000	0.00	0.00	0.00	3.79
2363	2445	5.439721	TCTTGTGCCTTCATGCTTGTATAT	58.560	37.500	0.00	0.00	0.00	0.86
2365	2447	6.377996	TCTTGTGCCTTCATGCTTGTATATTT	59.622	34.615	0.00	0.00	0.00	1.40
2366	2448	6.135290	TGTGCCTTCATGCTTGTATATTTC	57.865	37.500	0.00	0.00	0.00	2.17
2367	2449	5.207768	GTGCCTTCATGCTTGTATATTTCG	58.792	41.667	0.00	0.00	0.00	3.46
2368	2450	4.275689	TGCCTTCATGCTTGTATATTTCGG	59.724	41.667	0.00	0.00	0.00	4.30
2369	2451	4.320494	GCCTTCATGCTTGTATATTTCGGG	60.320	45.833	0.00	0.00	0.00	5.14
2370	2452	4.216257	CCTTCATGCTTGTATATTTCGGGG	59.784	45.833	0.00	0.00	0.00	5.73
2445	2852	4.164988	TGTGAAAATGGTGGGGTTGATTTT	59.835	37.500	0.00	0.00	32.10	1.82
2446	2853	5.129634	GTGAAAATGGTGGGGTTGATTTTT	58.870	37.500	0.00	0.00	30.11	1.94
2460	2867	8.664798	GGGGTTGATTTTTGTAAATAAATGCTC	58.335	33.333	0.00	0.00	34.16	4.26
2478	2885	0.878523	TCAAGCGTGAAGGTGGAACG	60.879	55.000	0.00	0.00	38.12	3.95
2504	2911	7.980742	AATGATGAATGTCAATTCGTGAATG	57.019	32.000	0.00	0.00	44.47	2.67
2510	2917	5.947228	ATGTCAATTCGTGAATGTTGAGT	57.053	34.783	0.00	0.00	38.23	3.41
2511	2918	5.749596	TGTCAATTCGTGAATGTTGAGTT	57.250	34.783	0.00	0.00	38.23	3.01
2555	2963	2.612493	CCCCCAATCCCCGTTGTCT	61.612	63.158	0.00	0.00	0.00	3.41
2556	2964	1.378514	CCCCAATCCCCGTTGTCTG	60.379	63.158	0.00	0.00	0.00	3.51
2580	2988	1.609208	CTTCAACCCTCAACACCAGG	58.391	55.000	0.00	0.00	0.00	4.45
2604	4259	3.097830	TCCCCAACCCACAACGGT	61.098	61.111	0.00	0.00	37.93	4.83
2655	4464	6.902224	ATTCAACAAACTAAAACTTGTGCC	57.098	33.333	0.00	0.00	35.95	5.01
2680	4489	4.288670	TCGTAGAGTTGCAGTAGTATGC	57.711	45.455	0.00	0.00	46.68	3.14
2688	4497	2.873133	GCAGTAGTATGCGAAGGACT	57.127	50.000	0.00	0.00	36.28	3.85
2689	4498	2.464865	GCAGTAGTATGCGAAGGACTG	58.535	52.381	0.00	4.10	36.28	3.51
2690	4499	2.799917	GCAGTAGTATGCGAAGGACTGG	60.800	54.545	9.17	0.00	36.28	4.00
2692	4501	0.384309	TAGTATGCGAAGGACTGGCG	59.616	55.000	0.00	0.00	0.00	5.69
2693	4502	1.153628	GTATGCGAAGGACTGGCGT	60.154	57.895	0.00	0.00	0.00	5.68
2710	6321	3.334751	TGTGCGCGTTCAAGGTCG	61.335	61.111	8.43	0.00	0.00	4.79
2724	6351	0.319297	AGGTCGCACCGTGTTAAGTC	60.319	55.000	0.00	0.00	44.90	3.01
2770	6398	3.561143	ACAACCAGTGTTCCAGCAAATA	58.439	40.909	0.00	0.00	37.01	1.40
2772	6400	5.321102	ACAACCAGTGTTCCAGCAAATATA	58.679	37.500	0.00	0.00	37.01	0.86
2773	6401	5.183140	ACAACCAGTGTTCCAGCAAATATAC	59.817	40.000	0.00	0.00	37.01	1.47
2774	6402	5.179452	ACCAGTGTTCCAGCAAATATACT	57.821	39.130	0.00	0.00	0.00	2.12
2775	6403	5.186198	ACCAGTGTTCCAGCAAATATACTC	58.814	41.667	0.00	0.00	0.00	2.59
2776	6404	5.185454	CCAGTGTTCCAGCAAATATACTCA	58.815	41.667	0.00	0.00	0.00	3.41
2778	6406	5.295292	CAGTGTTCCAGCAAATATACTCAGG	59.705	44.000	0.00	0.00	0.00	3.86
2779	6407	4.035675	GTGTTCCAGCAAATATACTCAGGC	59.964	45.833	0.00	0.00	0.00	4.85
2780	6408	4.080356	TGTTCCAGCAAATATACTCAGGCT	60.080	41.667	0.00	0.00	0.00	4.58
2783	6411	4.080356	TCCAGCAAATATACTCAGGCTTGT	60.080	41.667	0.00	0.00	0.00	3.16
2784	6412	4.641989	CCAGCAAATATACTCAGGCTTGTT	59.358	41.667	0.00	0.00	0.00	2.83
2785	6413	5.449588	CCAGCAAATATACTCAGGCTTGTTG	60.450	44.000	0.00	0.00	0.00	3.33
2786	6414	5.124457	CAGCAAATATACTCAGGCTTGTTGT	59.876	40.000	0.00	0.00	0.00	3.32
2787	6415	5.124457	AGCAAATATACTCAGGCTTGTTGTG	59.876	40.000	0.00	0.00	0.00	3.33
2788	6416	5.123820	GCAAATATACTCAGGCTTGTTGTGA	59.876	40.000	0.00	0.00	0.00	3.58
2790	6418	7.012327	GCAAATATACTCAGGCTTGTTGTGATA	59.988	37.037	0.00	0.00	0.00	2.15
2791	6419	9.060347	CAAATATACTCAGGCTTGTTGTGATAT	57.940	33.333	0.00	0.45	0.00	1.63
2792	6420	8.839310	AATATACTCAGGCTTGTTGTGATATC	57.161	34.615	0.00	0.00	0.00	1.63
2795	6423	4.263462	ACTCAGGCTTGTTGTGATATCCAA	60.263	41.667	0.00	1.60	0.00	3.53
2796	6424	4.661222	TCAGGCTTGTTGTGATATCCAAA	58.339	39.130	0.00	0.00	0.00	3.28
2797	6425	5.076182	TCAGGCTTGTTGTGATATCCAAAA	58.924	37.500	0.00	0.00	0.00	2.44
2798	6426	5.183713	TCAGGCTTGTTGTGATATCCAAAAG	59.816	40.000	0.00	10.53	0.00	2.27
2799	6427	5.183713	CAGGCTTGTTGTGATATCCAAAAGA	59.816	40.000	18.91	4.96	0.00	2.52
2800	6428	5.774690	AGGCTTGTTGTGATATCCAAAAGAA	59.225	36.000	18.91	9.83	0.00	2.52
2801	6429	6.267471	AGGCTTGTTGTGATATCCAAAAGAAA	59.733	34.615	18.91	9.72	26.52	2.52
2802	6430	6.928492	GGCTTGTTGTGATATCCAAAAGAAAA	59.072	34.615	18.91	8.36	26.52	2.29
2803	6431	7.440856	GGCTTGTTGTGATATCCAAAAGAAAAA	59.559	33.333	18.91	4.45	26.52	1.94
2868	6496	2.231478	CTGTGGTAGAAGAAGGCGAAGA	59.769	50.000	0.00	0.00	0.00	2.87
2969	6624	1.805120	CGAGTGAGTGTTGTTCCGGTT	60.805	52.381	0.00	0.00	0.00	4.44
2975	6630	0.736053	GTGTTGTTCCGGTTGCTGAA	59.264	50.000	0.00	0.00	0.00	3.02
3008	6667	2.047179	GGTTCTCCGGTGGCTGAC	60.047	66.667	0.00	0.00	0.00	3.51
3009	6668	2.741092	GTTCTCCGGTGGCTGACA	59.259	61.111	0.00	0.00	0.00	3.58
3010	6669	1.296715	GTTCTCCGGTGGCTGACAT	59.703	57.895	0.00	0.00	0.00	3.06
3011	6670	1.021390	GTTCTCCGGTGGCTGACATG	61.021	60.000	0.00	0.00	0.00	3.21
3021	6680	2.821366	CTGACATGCCGGCTGGTC	60.821	66.667	31.33	31.33	37.67	4.02
3022	6681	4.758251	TGACATGCCGGCTGGTCG	62.758	66.667	31.51	18.45	37.67	4.79
3111	6775	3.899545	TTCTCCTCCCCGAACGCCT	62.900	63.158	0.00	0.00	0.00	5.52
3112	6776	3.839432	CTCCTCCCCGAACGCCTC	61.839	72.222	0.00	0.00	0.00	4.70

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
40	41	3.186283	TCCCTTGATTTGTAGGGCTACA	58.814	45.455	0.00	0.00	43.61	2.74
130	132	3.700538	ACGGTAGTATGTAACACCCTGA	58.299	45.455	0.00	0.00	0.00	3.86
171	173	2.186160	CAGTTGCTGGGTCGTGCAA	61.186	57.895	0.00	0.00	45.40	4.08
172	174	2.591429	CAGTTGCTGGGTCGTGCA	60.591	61.111	0.00	0.00	37.42	4.57
365	372	6.265196	TGGCACTCATCTTACATTTTCTGTTT	59.735	34.615	0.00	0.00	39.39	2.83
405	412	8.904099	AACTGATCTTAGTAATTTAATCCGGG	57.096	34.615	0.00	0.00	0.00	5.73
515	526	1.203025	AGAACTGACCACCGGTAGAGT	60.203	52.381	6.87	5.05	35.25	3.24
621	661	6.251376	GCTCAATTTTATTTGGAGCGTAACAG	59.749	38.462	0.00	0.00	0.00	3.16
755	805	4.202070	TGAATGTGCTTGCATGGTGATATG	60.202	41.667	0.00	0.00	0.00	1.78
826	879	6.779860	AGTGGGCGGATATTATAAATCAAGT	58.220	36.000	0.00	0.00	0.00	3.16
1167	1229	1.880027	GCCTTGAACACCTGAAATCGT	59.120	47.619	0.00	0.00	0.00	3.73
1225	1287	3.429492	TGATGCCCAAATAGAACTTGCA	58.571	40.909	0.00	0.00	0.00	4.08
1270	1332	2.222027	CTTTGTCGCCTTGAACTCCTT	58.778	47.619	0.00	0.00	0.00	3.36
1361	1424	3.739167	CGGTTTCCGGAAGTGCAA	58.261	55.556	17.97	0.00	44.15	4.08
1512	1578	6.378582	CCAACAACAACCTACACATGATTAC	58.621	40.000	0.00	0.00	0.00	1.89
1734	1800	3.044059	GCACTTGTCATCTGCCGCC	62.044	63.158	0.00	0.00	0.00	6.13
2131	2197	7.936847	TGATATTTTTGTGCGTAGGAGGATATT	59.063	33.333	0.00	0.00	0.00	1.28
2143	2209	8.167345	TGTGCAATTATTTGATATTTTTGTGCG	58.833	29.630	1.55	0.00	34.60	5.34
2313	2391	5.929992	CAGCACAATTCACAATCTCCAAAAT	59.070	36.000	0.00	0.00	0.00	1.82
2356	2438	8.707449	ACTACTCAAATACCCCGAAATATACAA	58.293	33.333	0.00	0.00	0.00	2.41
2363	2445	5.486735	TGAACTACTCAAATACCCCGAAA	57.513	39.130	0.00	0.00	0.00	3.46
2365	2447	4.468510	ACATGAACTACTCAAATACCCCGA	59.531	41.667	0.00	0.00	37.67	5.14
2366	2448	4.766375	ACATGAACTACTCAAATACCCCG	58.234	43.478	0.00	0.00	37.67	5.73
2367	2449	7.462571	AAAACATGAACTACTCAAATACCCC	57.537	36.000	0.00	0.00	37.67	4.95
2445	2852	6.247727	TCACGCTTGAGCATTTATTTACAA	57.752	33.333	3.65	0.00	42.21	2.41
2446	2853	5.871465	TCACGCTTGAGCATTTATTTACA	57.129	34.783	3.65	0.00	42.21	2.41
2460	2867	0.878523	TCGTTCCACCTTCACGCTTG	60.879	55.000	0.00	0.00	33.85	4.01
2478	2885	8.529102	CATTCACGAATTGACATTCATCATTTC	58.471	33.333	0.00	0.00	39.14	2.17
2504	2911	8.902806	TGGTCCATCATAATTCATTAACTCAAC	58.097	33.333	0.00	0.00	0.00	3.18
2511	2918	9.730705	GAGAGAATGGTCCATCATAATTCATTA	57.269	33.333	4.39	0.00	31.15	1.90
2580	2988	2.610859	TGGGTTGGGGAGAGGAGC	60.611	66.667	0.00	0.00	0.00	4.70
2655	4464	4.688511	ACTACTGCAACTCTACGAGAAG	57.311	45.455	0.00	0.00	33.32	2.85
2678	4487	3.923864	ACACGCCAGTCCTTCGCA	61.924	61.111	0.00	0.00	0.00	5.10
2679	4488	3.414700	CACACGCCAGTCCTTCGC	61.415	66.667	0.00	0.00	0.00	4.70
2680	4489	3.414700	GCACACGCCAGTCCTTCG	61.415	66.667	0.00	0.00	0.00	3.79
2681	4490	3.414700	CGCACACGCCAGTCCTTC	61.415	66.667	0.00	0.00	33.11	3.46
2692	4501	2.248431	GACCTTGAACGCGCACAC	59.752	61.111	5.73	0.00	0.00	3.82
2693	4502	3.334751	CGACCTTGAACGCGCACA	61.335	61.111	5.73	3.35	0.00	4.57
2710	6321	0.234884	GCACAGACTTAACACGGTGC	59.765	55.000	8.30	13.28	46.25	5.01
2724	6351	1.165907	TTTGGAACCTCGCAGCACAG	61.166	55.000	0.00	0.00	0.00	3.66
2770	6398	5.130975	TGGATATCACAACAAGCCTGAGTAT	59.869	40.000	4.83	0.00	0.00	2.12
2772	6400	3.264193	TGGATATCACAACAAGCCTGAGT	59.736	43.478	4.83	0.00	0.00	3.41
2773	6401	3.877559	TGGATATCACAACAAGCCTGAG	58.122	45.455	4.83	0.00	0.00	3.35
2774	6402	3.998913	TGGATATCACAACAAGCCTGA	57.001	42.857	4.83	0.00	0.00	3.86
2775	6403	5.183713	TCTTTTGGATATCACAACAAGCCTG	59.816	40.000	4.83	0.00	0.00	4.85
2776	6404	5.324409	TCTTTTGGATATCACAACAAGCCT	58.676	37.500	4.83	0.00	0.00	4.58
2778	6406	7.945033	TTTTCTTTTGGATATCACAACAAGC	57.055	32.000	4.83	0.00	0.00	4.01
2804	6432	1.406751	GCCCACAACAAGCCTGTTTTT	60.407	47.619	0.00	0.00	43.45	1.94
2805	6433	0.177836	GCCCACAACAAGCCTGTTTT	59.822	50.000	0.00	0.00	43.45	2.43
2806	6434	0.975040	TGCCCACAACAAGCCTGTTT	60.975	50.000	0.00	0.00	43.45	2.83
2808	6436	2.127232	GTGCCCACAACAAGCCTGT	61.127	57.895	0.00	0.00	37.39	4.00
2809	6437	2.730094	GTGCCCACAACAAGCCTG	59.270	61.111	0.00	0.00	0.00	4.85
2817	6445	4.680237	CGCTCGAGGTGCCCACAA	62.680	66.667	15.58	0.00	0.00	3.33
2834	6462	4.192000	CACAGCATGGACTCGACC	57.808	61.111	0.00	0.00	43.62	4.79
2844	6472	1.406069	CGCCTTCTTCTACCACAGCAT	60.406	52.381	0.00	0.00	0.00	3.79
2938	6591	4.717629	TCACTCGTCGCTTGGCCG	62.718	66.667	0.00	0.00	0.00	6.13
2943	6596	0.102481	ACAACACTCACTCGTCGCTT	59.898	50.000	0.00	0.00	0.00	4.68
2947	6600	1.129326	CGGAACAACACTCACTCGTC	58.871	55.000	0.00	0.00	0.00	4.20
2953	6606	0.107410	AGCAACCGGAACAACACTCA	60.107	50.000	9.46	0.00	0.00	3.41
3005	6664	4.758251	CGACCAGCCGGCATGTCA	62.758	66.667	33.64	0.00	34.57	3.58
3020	6679	2.382746	CGACGAGTACGACACCCGA	61.383	63.158	3.30	0.00	42.66	5.14
3021	6680	1.351430	TACGACGAGTACGACACCCG	61.351	60.000	0.00	0.00	42.66	5.28
3022	6681	0.095417	GTACGACGAGTACGACACCC	59.905	60.000	0.00	0.00	45.20	4.61
3037	6700	0.520827	GACGAAGCTCTCCGTGTACG	60.521	60.000	12.44	0.00	39.30	3.67
3080	6743	2.370189	GGAGGAGAACATATCCACCAGG	59.630	54.545	3.08	0.00	44.47	4.45
3081	6744	2.370189	GGGAGGAGAACATATCCACCAG	59.630	54.545	9.24	0.00	46.25	4.00
3090	6753	1.898154	CGTTCGGGGAGGAGAACAT	59.102	57.895	8.70	0.00	44.94	2.71

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.