AutoCloner

Multiple sequence alignment - TraesCS6D01G328000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G328000	chr6D	100.000	3114	0	0	1	3114	432915350	432912237	0.000000e+00	5751.0
1	TraesCS6D01G328000	chr6D	90.969	2580	182	20	50	2593	433259991	433257427	0.000000e+00	3426.0
2	TraesCS6D01G328000	chr6D	90.348	1782	157	6	806	2576	433155432	433153655	0.000000e+00	2324.0
3	TraesCS6D01G328000	chr6D	89.966	1774	160	6	806	2568	432931619	432929853	0.000000e+00	2274.0
4	TraesCS6D01G328000	chr6D	90.944	1579	124	8	806	2373	433280766	433279196	0.000000e+00	2106.0
5	TraesCS6D01G328000	chr6D	93.499	523	31	3	2593	3113	37716188	37715667	0.000000e+00	774.0
6	TraesCS6D01G328000	chr6D	93.130	524	32	4	2593	3113	454150922	454150400	0.000000e+00	765.0
7	TraesCS6D01G328000	chr6D	88.403	526	56	4	2072	2593	433037324	433036800	2.040000e-176	628.0
8	TraesCS6D01G328000	chr6D	81.149	557	87	10	59	599	433156216	433155662	6.170000e-117	431.0
9	TraesCS6D01G328000	chr6D	80.077	522	83	11	54	559	433281565	433281049	4.910000e-98	368.0
10	TraesCS6D01G328000	chr6D	78.465	469	79	15	156	606	432932317	432931853	1.410000e-73	287.0
11	TraesCS6D01G328000	chr6D	86.124	209	28	1	2369	2577	433279038	433278831	1.120000e-54	224.0
12	TraesCS6D01G328000	chr6D	87.931	58	5	1	592	649	432931841	432931786	2.000000e-07	67.6
13	TraesCS6D01G328000	chr6A	93.632	2544	129	16	50	2586	579125775	579123258	0.000000e+00	3770.0
14	TraesCS6D01G328000	chr6A	84.789	2393	273	51	54	2370	579144037	579141660	0.000000e+00	2318.0
15	TraesCS6D01G328000	chr6B	93.187	2554	149	12	50	2591	653857388	653854848	0.000000e+00	3729.0
16	TraesCS6D01G328000	chr6B	89.950	2577	197	20	50	2593	653716510	653713963	0.000000e+00	3267.0
17	TraesCS6D01G328000	chr6B	89.472	2574	198	32	50	2593	653789640	653787110	0.000000e+00	3184.0
18	TraesCS6D01G328000	chr6B	91.120	2151	144	20	50	2167	653195687	653193551	0.000000e+00	2870.0
19	TraesCS6D01G328000	chr6B	90.355	1576	134	7	806	2370	653872740	653871172	0.000000e+00	2052.0
20	TraesCS6D01G328000	chr6B	85.412	425	57	4	2171	2591	653187454	653187031	1.330000e-118	436.0
21	TraesCS6D01G328000	chr6B	87.324	213	27	0	2365	2577	653871014	653870802	8.630000e-61	244.0
22	TraesCS6D01G328000	chr6B	96.825	63	2	0	1	63	717853936	717853874	4.250000e-19	106.0
23	TraesCS6D01G328000	chr3D	93.321	524	32	3	2592	3113	527126233	527125711	0.000000e+00	771.0
24	TraesCS6D01G328000	chr3D	93.282	521	32	3	2595	3113	136470610	136470091	0.000000e+00	765.0
25	TraesCS6D01G328000	chr3D	93.282	521	32	3	2595	3113	167377912	167377393	0.000000e+00	765.0
26	TraesCS6D01G328000	chr3D	100.000	57	0	0	1	57	3364849	3364905	4.250000e-19	106.0
27	TraesCS6D01G328000	chr7D	93.308	523	32	3	2593	3113	106381694	106381173	0.000000e+00	769.0
28	TraesCS6D01G328000	chr4D	93.295	522	33	2	2593	3113	73345772	73346292	0.000000e+00	769.0
29	TraesCS6D01G328000	chr4D	100.000	57	0	0	1	57	419309294	419309350	4.250000e-19	106.0
30	TraesCS6D01G328000	chr5D	93.282	521	32	3	2595	3113	542602785	542602266	0.000000e+00	765.0
31	TraesCS6D01G328000	chrUn	93.117	523	33	3	2593	3113	27171516	27172037	0.000000e+00	763.0
32	TraesCS6D01G328000	chrUn	100.000	57	0	0	1	57	2004054	2004110	4.250000e-19	106.0
33	TraesCS6D01G328000	chrUn	96.825	63	2	0	1	63	368210038	368209976	4.250000e-19	106.0
34	TraesCS6D01G328000	chr7B	96.825	63	2	0	1	63	99219196	99219134	4.250000e-19	106.0
35	TraesCS6D01G328000	chr5B	96.825	63	2	0	1	63	63280376	63280314	4.250000e-19	106.0
36	TraesCS6D01G328000	chr5B	96.825	63	2	0	1	63	362953864	362953802	4.250000e-19	106.0
37	TraesCS6D01G328000	chr4A	100.000	57	0	0	1	57	473284724	473284780	4.250000e-19	106.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G328000	chr6D	432912237	432915350	3113	True	5751.000000	5751	100.0000	1	3114	1	chr6D.!!$R2	3113
1	TraesCS6D01G328000	chr6D	433257427	433259991	2564	True	3426.000000	3426	90.9690	50	2593	1	chr6D.!!$R4	2543
2	TraesCS6D01G328000	chr6D	433153655	433156216	2561	True	1377.500000	2324	85.7485	59	2576	2	chr6D.!!$R7	2517
3	TraesCS6D01G328000	chr6D	433278831	433281565	2734	True	899.333333	2106	85.7150	54	2577	3	chr6D.!!$R8	2523
4	TraesCS6D01G328000	chr6D	432929853	432932317	2464	True	876.200000	2274	85.4540	156	2568	3	chr6D.!!$R6	2412
5	TraesCS6D01G328000	chr6D	37715667	37716188	521	True	774.000000	774	93.4990	2593	3113	1	chr6D.!!$R1	520
6	TraesCS6D01G328000	chr6D	454150400	454150922	522	True	765.000000	765	93.1300	2593	3113	1	chr6D.!!$R5	520
7	TraesCS6D01G328000	chr6D	433036800	433037324	524	True	628.000000	628	88.4030	2072	2593	1	chr6D.!!$R3	521
8	TraesCS6D01G328000	chr6A	579123258	579125775	2517	True	3770.000000	3770	93.6320	50	2586	1	chr6A.!!$R1	2536
9	TraesCS6D01G328000	chr6A	579141660	579144037	2377	True	2318.000000	2318	84.7890	54	2370	1	chr6A.!!$R2	2316
10	TraesCS6D01G328000	chr6B	653854848	653857388	2540	True	3729.000000	3729	93.1870	50	2591	1	chr6B.!!$R5	2541
11	TraesCS6D01G328000	chr6B	653713963	653716510	2547	True	3267.000000	3267	89.9500	50	2593	1	chr6B.!!$R3	2543
12	TraesCS6D01G328000	chr6B	653787110	653789640	2530	True	3184.000000	3184	89.4720	50	2593	1	chr6B.!!$R4	2543
13	TraesCS6D01G328000	chr6B	653193551	653195687	2136	True	2870.000000	2870	91.1200	50	2167	1	chr6B.!!$R2	2117
14	TraesCS6D01G328000	chr6B	653870802	653872740	1938	True	1148.000000	2052	88.8395	806	2577	2	chr6B.!!$R7	1771
15	TraesCS6D01G328000	chr3D	527125711	527126233	522	True	771.000000	771	93.3210	2592	3113	1	chr3D.!!$R3	521
16	TraesCS6D01G328000	chr3D	136470091	136470610	519	True	765.000000	765	93.2820	2595	3113	1	chr3D.!!$R1	518
17	TraesCS6D01G328000	chr3D	167377393	167377912	519	True	765.000000	765	93.2820	2595	3113	1	chr3D.!!$R2	518
18	TraesCS6D01G328000	chr7D	106381173	106381694	521	True	769.000000	769	93.3080	2593	3113	1	chr7D.!!$R1	520
19	TraesCS6D01G328000	chr4D	73345772	73346292	520	False	769.000000	769	93.2950	2593	3113	1	chr4D.!!$F1	520
20	TraesCS6D01G328000	chr5D	542602266	542602785	519	True	765.000000	765	93.2820	2595	3113	1	chr5D.!!$R1	518
21	TraesCS6D01G328000	chrUn	27171516	27172037	521	False	763.000000	763	93.1170	2593	3113	1	chrUn.!!$F2	520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
324	338	1.180029	GTGGCAGGGAAGTACGTCTA	58.820	55.000	8.73	0.0	0.00	2.59	F
1439	1530	1.075482	AGGGCCAATGTGGTGAGTG	59.925	57.895	6.18	0.0	40.46	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1522	1615	1.161563	ACGCCCAACAACAACCTACG	61.162	55.0	0.0	0.0	0.0	3.51	R
2975	3259	0.113776	TACGGGAGAGGGGCGAATAT	59.886	55.0	0.0	0.0	0.0	1.28	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
39	40	5.713792	TTTTGTCTGAAAATAATGGCCGA	57.286	34.783	0.00	0.00	0.00	5.54
40	41	4.695217	TTGTCTGAAAATAATGGCCGAC	57.305	40.909	0.00	0.00	0.00	4.79
41	42	3.680490	TGTCTGAAAATAATGGCCGACA	58.320	40.909	0.00	0.00	0.00	4.35
42	43	4.269183	TGTCTGAAAATAATGGCCGACAT	58.731	39.130	0.00	0.00	43.07	3.06
43	44	4.335315	TGTCTGAAAATAATGGCCGACATC	59.665	41.667	0.00	0.00	39.40	3.06
44	45	4.335315	GTCTGAAAATAATGGCCGACATCA	59.665	41.667	0.00	0.00	39.40	3.07
45	46	5.009010	GTCTGAAAATAATGGCCGACATCAT	59.991	40.000	0.00	0.00	39.40	2.45
46	47	5.239306	TCTGAAAATAATGGCCGACATCATC	59.761	40.000	0.00	0.00	39.40	2.92
47	48	4.886489	TGAAAATAATGGCCGACATCATCA	59.114	37.500	0.00	0.00	39.40	3.07
48	49	5.535783	TGAAAATAATGGCCGACATCATCAT	59.464	36.000	0.00	0.00	39.40	2.45
52	53	1.667236	TGGCCGACATCATCATTGAC	58.333	50.000	0.00	0.00	33.85	3.18
165	166	6.546428	ACTCTGCAAGGTGTTACATACTAT	57.454	37.500	0.00	0.00	0.00	2.12
324	338	1.180029	GTGGCAGGGAAGTACGTCTA	58.820	55.000	8.73	0.00	0.00	2.59
369	383	1.303561	GTGTGCTTGGGGCTCATGA	60.304	57.895	4.14	0.00	44.53	3.07
981	1066	3.653539	TTGCAGACGAGTAGTAGCAAA	57.346	42.857	11.52	0.00	45.06	3.68
1116	1206	1.300963	GGTGGCAAGGCATGAGAGA	59.699	57.895	0.00	0.00	0.00	3.10
1307	1398	3.081804	CAAAGGCTAACAAGGGGTACAG	58.918	50.000	0.00	0.00	0.00	2.74
1439	1530	1.075482	AGGGCCAATGTGGTGAGTG	59.925	57.895	6.18	0.00	40.46	3.51
1522	1615	4.989279	ATCTACCAAAACATGACCATGC	57.011	40.909	9.70	0.00	42.39	4.06
1693	1786	6.601613	TGGACGATGCCTTTAAGTTCATAATT	59.398	34.615	0.00	0.00	0.00	1.40
1850	1943	2.280524	CCGTCGCAAGTCAACCCA	60.281	61.111	0.00	0.00	39.48	4.51
1882	1975	4.769488	GCTGTAGATGGAGGAGATATGACA	59.231	45.833	0.00	0.00	0.00	3.58
2153	2246	4.753610	CACATATCCTCCTATGCACACAAG	59.246	45.833	0.00	0.00	33.26	3.16
2167	2260	9.454585	CTATGCACACAAGTATCAAATAATTGG	57.545	33.333	10.70	4.15	43.07	3.16
2345	2459	1.270571	TGTGAATTGTGCTGCCTCGTA	60.271	47.619	0.00	0.00	0.00	3.43
2462	2743	9.801873	TGATTTGTAAATAAATGCTAAAGCCTC	57.198	29.630	0.00	0.00	41.18	4.70
2468	2749	7.954666	AAATAAATGCTAAAGCCTCAAGGTA	57.045	32.000	0.00	0.00	41.18	3.08
2477	2758	5.515797	AAAGCCTCAAGGTAGAACAAAAC	57.484	39.130	0.00	0.00	37.57	2.43
2571	2853	1.001974	TGGTCGTTCAACCCTCATCAG	59.998	52.381	0.00	0.00	38.65	2.90
2858	3142	1.063806	CGTCCTTCTTGTCAGCTTCG	58.936	55.000	0.00	0.00	0.00	3.79
2859	3143	1.335964	CGTCCTTCTTGTCAGCTTCGA	60.336	52.381	0.00	0.00	0.00	3.71
2860	3144	2.333014	GTCCTTCTTGTCAGCTTCGAG	58.667	52.381	0.00	0.00	0.00	4.04
2915	3199	0.612744	TGGTGATGATGAAGGCGACA	59.387	50.000	0.00	0.00	0.00	4.35
2916	3200	1.293924	GGTGATGATGAAGGCGACAG	58.706	55.000	0.00	0.00	0.00	3.51
2934	3218	2.308275	ACAGGGACGTAGAGGAAGTAGT	59.692	50.000	0.00	0.00	0.00	2.73
2935	3219	2.683867	CAGGGACGTAGAGGAAGTAGTG	59.316	54.545	0.00	0.00	0.00	2.74
2943	3227	2.938838	AGAGGAAGTAGTGGATCGGAG	58.061	52.381	0.00	0.00	0.00	4.63
2975	3259	1.265635	CGTGATCGCTTCCCAAAAACA	59.734	47.619	4.48	0.00	0.00	2.83
2988	3272	3.023832	CCAAAAACATATTCGCCCCTCT	58.976	45.455	0.00	0.00	0.00	3.69
3003	3288	1.664321	CCTCTCCCGTACAGGAACCG	61.664	65.000	0.00	0.00	45.00	4.44
3006	3291	1.664321	CTCCCGTACAGGAACCGGAG	61.664	65.000	9.46	0.00	44.41	4.63

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
16	17	5.923684	GTCGGCCATTATTTTCAGACAAAAA	59.076	36.000	2.24	0.00	32.99	1.94
17	18	5.010112	TGTCGGCCATTATTTTCAGACAAAA	59.990	36.000	2.24	0.00	34.91	2.44
18	19	4.520874	TGTCGGCCATTATTTTCAGACAAA	59.479	37.500	2.24	0.00	34.91	2.83
19	20	4.075682	TGTCGGCCATTATTTTCAGACAA	58.924	39.130	2.24	0.00	34.91	3.18
20	21	3.680490	TGTCGGCCATTATTTTCAGACA	58.320	40.909	2.24	0.54	35.38	3.41
21	22	4.335315	TGATGTCGGCCATTATTTTCAGAC	59.665	41.667	2.24	0.00	32.56	3.51
22	23	4.522114	TGATGTCGGCCATTATTTTCAGA	58.478	39.130	2.24	0.00	32.56	3.27
23	24	4.898829	TGATGTCGGCCATTATTTTCAG	57.101	40.909	2.24	0.00	32.56	3.02
24	25	4.886489	TGATGATGTCGGCCATTATTTTCA	59.114	37.500	2.24	0.00	30.43	2.69
25	26	5.437289	TGATGATGTCGGCCATTATTTTC	57.563	39.130	2.24	0.00	30.43	2.29
26	27	6.040729	TCAATGATGATGTCGGCCATTATTTT	59.959	34.615	2.24	0.00	30.43	1.82
27	28	5.535783	TCAATGATGATGTCGGCCATTATTT	59.464	36.000	2.24	0.00	30.43	1.40
28	29	5.048504	GTCAATGATGATGTCGGCCATTATT	60.049	40.000	2.24	0.00	38.01	1.40
29	30	4.456911	GTCAATGATGATGTCGGCCATTAT	59.543	41.667	2.24	0.00	38.01	1.28
30	31	3.814842	GTCAATGATGATGTCGGCCATTA	59.185	43.478	2.24	0.00	38.01	1.90
31	32	2.620115	GTCAATGATGATGTCGGCCATT	59.380	45.455	2.24	0.00	38.01	3.16
32	33	2.158711	AGTCAATGATGATGTCGGCCAT	60.159	45.455	2.24	0.00	38.01	4.40
33	34	1.210234	AGTCAATGATGATGTCGGCCA	59.790	47.619	2.24	0.00	38.01	5.36
34	35	1.959042	AGTCAATGATGATGTCGGCC	58.041	50.000	0.00	0.00	38.01	6.13
35	36	3.488047	CCAAAGTCAATGATGATGTCGGC	60.488	47.826	0.00	0.00	38.01	5.54
36	37	3.691118	ACCAAAGTCAATGATGATGTCGG	59.309	43.478	0.00	0.00	38.01	4.79
37	38	4.952262	ACCAAAGTCAATGATGATGTCG	57.048	40.909	0.00	0.00	38.01	4.35
38	39	5.220931	GGCTACCAAAGTCAATGATGATGTC	60.221	44.000	0.00	0.00	38.01	3.06
39	40	4.641989	GGCTACCAAAGTCAATGATGATGT	59.358	41.667	0.00	0.00	38.01	3.06
40	41	4.037208	GGGCTACCAAAGTCAATGATGATG	59.963	45.833	0.00	0.00	35.69	3.07
41	42	4.079558	AGGGCTACCAAAGTCAATGATGAT	60.080	41.667	0.00	0.00	37.25	2.45
42	43	3.266772	AGGGCTACCAAAGTCAATGATGA	59.733	43.478	0.00	0.00	40.13	2.92
43	44	3.624777	AGGGCTACCAAAGTCAATGATG	58.375	45.455	0.00	0.00	40.13	3.07
44	45	4.227300	TGTAGGGCTACCAAAGTCAATGAT	59.773	41.667	0.00	0.00	40.13	2.45
45	46	3.585289	TGTAGGGCTACCAAAGTCAATGA	59.415	43.478	0.00	0.00	40.13	2.57
46	47	3.950397	TGTAGGGCTACCAAAGTCAATG	58.050	45.455	0.00	0.00	40.13	2.82
47	48	4.650972	TTGTAGGGCTACCAAAGTCAAT	57.349	40.909	0.00	0.00	40.13	2.57
48	49	4.440826	TTTGTAGGGCTACCAAAGTCAA	57.559	40.909	0.00	0.00	40.13	3.18
52	53	4.399303	CCTTGATTTGTAGGGCTACCAAAG	59.601	45.833	0.00	0.00	40.13	2.77
134	135	2.434336	ACACCTTGCAGAGTAGACACAA	59.566	45.455	0.00	0.00	0.00	3.33
230	232	2.672295	GGTGGCCATGTTCGGGTA	59.328	61.111	9.72	0.00	0.00	3.69
240	245	3.215568	CAACAGTTGCGGTGGCCA	61.216	61.111	0.00	0.00	38.85	5.36
324	338	5.897377	AGTGCAAGAATTTTAATACCGCT	57.103	34.783	0.00	0.00	0.00	5.52
391	408	3.489355	ACATGTTTGGCACTCATCTTGA	58.511	40.909	0.00	0.00	0.00	3.02
436	456	9.692749	CGTTGGAATAAGATTAGCTAACTGATA	57.307	33.333	8.70	0.73	0.00	2.15
762	828	5.105675	TGTGCTTGCATGTTGATATTGACAT	60.106	36.000	0.00	0.50	36.97	3.06
969	1054	6.985188	TTGATGGATTGTTTGCTACTACTC	57.015	37.500	0.00	0.00	0.00	2.59
981	1066	4.099881	GCCATGGTATGTTTGATGGATTGT	59.900	41.667	14.67	0.00	38.10	2.71
1116	1206	1.678728	CGGTTGTACTGCACCATCCAT	60.679	52.381	9.32	0.00	0.00	3.41
1522	1615	1.161563	ACGCCCAACAACAACCTACG	61.162	55.000	0.00	0.00	0.00	3.51
1850	1943	3.417101	CTCCATCTACAGCTACCGAGAT	58.583	50.000	0.00	0.00	0.00	2.75
1882	1975	5.301805	CACTCCACCTTTGTAAAACTGGAAT	59.698	40.000	0.00	0.00	0.00	3.01
2295	2403	9.391006	TCCGAAAGATATAGTTAGCACAAATTT	57.609	29.630	0.00	0.00	0.00	1.82
2304	2412	9.967346	TTCACAATCTCCGAAAGATATAGTTAG	57.033	33.333	1.35	0.00	44.26	2.34
2345	2459	4.647853	AGTTCATTATGCATGCATGAAGGT	59.352	37.500	37.43	22.01	37.82	3.50
2381	2660	8.798402	TGGTTCCAAGATTATCGTAAAAACAAT	58.202	29.630	0.00	0.00	0.00	2.71
2455	2736	4.036380	CGTTTTGTTCTACCTTGAGGCTTT	59.964	41.667	0.00	0.00	39.32	3.51
2462	2743	6.668323	ACATTCATCGTTTTGTTCTACCTTG	58.332	36.000	0.00	0.00	0.00	3.61
2468	2749	6.578545	CGAATTGACATTCATCGTTTTGTTCT	59.421	34.615	0.00	0.00	39.14	3.01
2477	2758	8.116136	TCAAGATTTACGAATTGACATTCATCG	58.884	33.333	0.00	0.00	39.14	3.84
2515	2796	0.902531	GGGAGAGAATGGTCCGTCAA	59.097	55.000	0.00	0.00	33.13	3.18
2571	2853	3.011517	TTGGGGAGAGGAGGCTGC	61.012	66.667	0.00	0.00	0.00	5.25
2624	2908	6.978659	TGCTAGTGATTTACTCGTGGATTAAG	59.021	38.462	0.00	0.00	40.89	1.85
2689	2973	2.218953	TAGCGTAGTATGTGCTTGCC	57.781	50.000	0.67	0.00	40.06	4.52
2692	2976	4.795970	GCAATTAGCGTAGTATGTGCTT	57.204	40.909	0.67	0.00	40.06	3.91
2915	3199	2.356947	CCACTACTTCCTCTACGTCCCT	60.357	54.545	0.00	0.00	0.00	4.20
2916	3200	2.022934	CCACTACTTCCTCTACGTCCC	58.977	57.143	0.00	0.00	0.00	4.46
2934	3218	3.531207	CTGCTCGCCTCCGATCCA	61.531	66.667	0.00	0.00	43.47	3.41
2935	3219	3.492311	GACTGCTCGCCTCCGATCC	62.492	68.421	0.00	0.00	43.47	3.36
2958	3242	4.970003	CGAATATGTTTTTGGGAAGCGATC	59.030	41.667	0.00	0.00	0.00	3.69
2965	3249	2.104170	GGGGCGAATATGTTTTTGGGA	58.896	47.619	0.00	0.00	0.00	4.37
2975	3259	0.113776	TACGGGAGAGGGGCGAATAT	59.886	55.000	0.00	0.00	0.00	1.28
3012	3298	1.079057	GAGCAGGTCTCCGAAACCC	60.079	63.158	0.00	0.00	37.52	4.11

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.