Multiple sequence alignment - TraesCS6D01G327700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G327700 chr6D 100.000 2846 0 0 1 2846 432883461 432886306 0.000000e+00 5256
1 TraesCS6D01G327700 chr6A 87.997 1308 75 29 848 2097 578982883 578984166 0.000000e+00 1471
2 TraesCS6D01G327700 chr6A 87.436 390 39 7 2461 2846 578984317 578984700 9.360000e-120 440
3 TraesCS6D01G327700 chr6A 76.923 624 64 40 139 703 578982105 578982707 6.000000e-72 281
4 TraesCS6D01G327700 chr6A 91.837 98 6 2 45 142 578981976 578982071 4.950000e-28 135
5 TraesCS6D01G327700 chr6B 88.016 1285 75 36 858 2093 653014835 653016089 0.000000e+00 1447
6 TraesCS6D01G327700 chr6B 88.136 767 65 11 2097 2846 653017516 653018273 0.000000e+00 889
7 TraesCS6D01G327700 chr6B 81.102 635 50 35 133 733 653014208 653014806 7.240000e-121 444
8 TraesCS6D01G327700 chr6B 87.755 98 4 3 53 142 653014083 653014180 1.080000e-19 108
9 TraesCS6D01G327700 chr7B 89.447 199 7 5 968 1156 31433260 31433454 3.660000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G327700 chr6D 432883461 432886306 2845 False 5256.00 5256 100.00000 1 2846 1 chr6D.!!$F1 2845
1 TraesCS6D01G327700 chr6A 578981976 578984700 2724 False 581.75 1471 86.04825 45 2846 4 chr6A.!!$F1 2801
2 TraesCS6D01G327700 chr6B 653014083 653018273 4190 False 722.00 1447 86.25225 53 2846 4 chr6B.!!$F1 2793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
954 1230 0.035317 AATCGCCTGTTGCTCTGTGA 59.965 50.0 0.0 0.0 38.05 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2520 4336 0.839946 ATCATGGTTCGGGGAAGAGG 59.16 55.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.113562 GTACCCCGTGGTTTGCCA 59.886 61.111 0.00 0.00 44.75 4.92
46 47 9.495572 AAAAACACTTTCTTAAAATGTTCACCA 57.504 25.926 0.38 0.00 31.16 4.17
47 48 9.495572 AAAACACTTTCTTAAAATGTTCACCAA 57.504 25.926 0.38 0.00 31.16 3.67
51 52 8.387354 CACTTTCTTAAAATGTTCACCAAAACC 58.613 33.333 0.00 0.00 0.00 3.27
89 90 2.713967 ATGCACCGCTGCCATTTCC 61.714 57.895 0.00 0.00 43.51 3.13
145 191 0.389948 ACCACAACCGAGCGAGATTC 60.390 55.000 0.00 0.00 0.00 2.52
147 193 0.732880 CACAACCGAGCGAGATTCGT 60.733 55.000 0.17 0.00 42.81 3.85
153 199 4.554363 AGCGAGATTCGTCGGCGG 62.554 66.667 10.62 0.00 42.81 6.13
184 233 2.338015 GGCGGAGGAGACACGTACA 61.338 63.158 0.00 0.00 35.72 2.90
188 237 1.584380 GGAGGAGACACGTACACGCT 61.584 60.000 0.85 0.00 44.43 5.07
189 238 0.454620 GAGGAGACACGTACACGCTG 60.455 60.000 0.85 2.66 44.43 5.18
204 253 2.684843 GCTGAACGCCAAGCTCCTG 61.685 63.158 0.00 0.00 0.00 3.86
351 428 2.649034 GCTCGTGACGGTGGAAGA 59.351 61.111 4.70 0.00 0.00 2.87
353 430 1.863662 GCTCGTGACGGTGGAAGAGA 61.864 60.000 4.70 0.00 0.00 3.10
354 431 0.596577 CTCGTGACGGTGGAAGAGAA 59.403 55.000 4.70 0.00 0.00 2.87
355 432 0.596577 TCGTGACGGTGGAAGAGAAG 59.403 55.000 4.70 0.00 0.00 2.85
356 433 1.009389 CGTGACGGTGGAAGAGAAGC 61.009 60.000 0.00 0.00 0.00 3.86
358 435 3.456317 ACGGTGGAAGAGAAGCGT 58.544 55.556 0.00 0.00 44.86 5.07
359 436 1.289380 ACGGTGGAAGAGAAGCGTC 59.711 57.895 0.00 0.00 46.55 5.19
360 437 1.446272 CGGTGGAAGAGAAGCGTCC 60.446 63.158 0.00 0.00 44.41 4.79
400 484 1.003355 ATGGTCACGGGTCAAGCTG 60.003 57.895 0.00 0.00 0.00 4.24
401 485 3.050275 GGTCACGGGTCAAGCTGC 61.050 66.667 0.00 0.00 0.00 5.25
402 486 3.414700 GTCACGGGTCAAGCTGCG 61.415 66.667 0.00 0.00 0.00 5.18
410 494 4.299547 TCAAGCTGCGTGCCTCGT 62.300 61.111 10.80 0.00 44.23 4.18
419 503 1.445582 CGTGCCTCGTCCTGGTAAC 60.446 63.158 0.00 0.00 34.52 2.50
435 519 4.751060 TGGTAACAGTATCGGAATGTGAC 58.249 43.478 0.00 0.00 46.17 3.67
445 536 2.894765 TCGGAATGTGACCAGTACAAGA 59.105 45.455 0.00 0.00 0.00 3.02
447 538 4.062293 CGGAATGTGACCAGTACAAGAAA 58.938 43.478 0.00 0.00 0.00 2.52
448 539 4.695455 CGGAATGTGACCAGTACAAGAAAT 59.305 41.667 0.00 0.00 0.00 2.17
454 546 5.221823 TGTGACCAGTACAAGAAATCATGGA 60.222 40.000 0.00 0.00 0.00 3.41
462 554 7.487189 CAGTACAAGAAATCATGGAGAAAATGC 59.513 37.037 0.00 0.00 0.00 3.56
488 585 6.311445 GTGAATGTGTGAATCTTACAGACGAT 59.689 38.462 0.00 0.00 34.90 3.73
489 586 7.488150 GTGAATGTGTGAATCTTACAGACGATA 59.512 37.037 0.00 0.00 34.90 2.92
490 587 7.702348 TGAATGTGTGAATCTTACAGACGATAG 59.298 37.037 0.00 0.00 46.19 2.08
491 588 5.340803 TGTGTGAATCTTACAGACGATAGC 58.659 41.667 0.00 0.00 42.67 2.97
492 589 5.105917 TGTGTGAATCTTACAGACGATAGCA 60.106 40.000 0.00 0.00 42.67 3.49
493 590 5.230306 GTGTGAATCTTACAGACGATAGCAC 59.770 44.000 0.00 0.00 42.67 4.40
494 591 5.105917 TGTGAATCTTACAGACGATAGCACA 60.106 40.000 0.00 0.00 42.67 4.57
495 592 5.980116 GTGAATCTTACAGACGATAGCACAT 59.020 40.000 0.00 0.00 42.67 3.21
496 593 6.477033 GTGAATCTTACAGACGATAGCACATT 59.523 38.462 0.00 0.00 42.67 2.71
497 594 6.697455 TGAATCTTACAGACGATAGCACATTC 59.303 38.462 0.00 0.00 42.67 2.67
498 595 4.598062 TCTTACAGACGATAGCACATTCG 58.402 43.478 0.00 0.00 41.04 3.34
499 596 1.560923 ACAGACGATAGCACATTCGC 58.439 50.000 0.00 0.00 38.91 4.70
500 597 0.855349 CAGACGATAGCACATTCGCC 59.145 55.000 0.00 0.00 38.91 5.54
501 598 0.595053 AGACGATAGCACATTCGCCG 60.595 55.000 0.00 0.00 38.91 6.46
502 599 1.548973 GACGATAGCACATTCGCCGG 61.549 60.000 0.00 0.00 38.91 6.13
503 600 2.939022 GATAGCACATTCGCCGGC 59.061 61.111 19.07 19.07 0.00 6.13
504 601 2.943345 GATAGCACATTCGCCGGCG 61.943 63.158 42.13 42.13 41.35 6.46
592 697 3.055385 AGCGGTCAACACTGTACCATAAT 60.055 43.478 2.68 0.00 32.55 1.28
593 698 4.160814 AGCGGTCAACACTGTACCATAATA 59.839 41.667 2.68 0.00 32.55 0.98
594 699 4.871557 GCGGTCAACACTGTACCATAATAA 59.128 41.667 2.68 0.00 32.55 1.40
623 748 0.464373 CCGTGGGAATGTAGCAGCAT 60.464 55.000 0.00 0.00 0.00 3.79
658 786 3.388345 TTACACAACGACCTGCATACA 57.612 42.857 0.00 0.00 0.00 2.29
659 787 2.472695 ACACAACGACCTGCATACAT 57.527 45.000 0.00 0.00 0.00 2.29
660 788 2.076100 ACACAACGACCTGCATACATG 58.924 47.619 0.00 0.00 0.00 3.21
681 809 4.046462 TGCTATACGTAGGAATGTTTCGC 58.954 43.478 0.08 0.00 0.00 4.70
726 854 1.944676 CGCGCGATGGAGAACTACC 60.945 63.158 28.94 0.00 0.00 3.18
727 855 1.437986 GCGCGATGGAGAACTACCT 59.562 57.895 12.10 0.00 0.00 3.08
728 856 0.666913 GCGCGATGGAGAACTACCTA 59.333 55.000 12.10 0.00 0.00 3.08
729 857 1.335142 GCGCGATGGAGAACTACCTAG 60.335 57.143 12.10 0.00 0.00 3.02
730 858 1.267261 CGCGATGGAGAACTACCTAGG 59.733 57.143 7.41 7.41 0.00 3.02
731 859 2.308690 GCGATGGAGAACTACCTAGGT 58.691 52.381 20.57 20.57 0.00 3.08
732 860 3.484407 GCGATGGAGAACTACCTAGGTA 58.516 50.000 20.60 20.60 0.00 3.08
733 861 3.252944 GCGATGGAGAACTACCTAGGTAC 59.747 52.174 18.10 8.65 0.00 3.34
734 862 4.716794 CGATGGAGAACTACCTAGGTACT 58.283 47.826 18.10 13.45 46.37 2.73
735 863 4.756135 CGATGGAGAACTACCTAGGTACTC 59.244 50.000 21.75 21.75 41.75 2.59
736 864 4.516652 TGGAGAACTACCTAGGTACTCC 57.483 50.000 32.06 32.06 41.75 3.85
738 866 4.543337 TGGAGAACTACCTAGGTACTCCTT 59.457 45.833 34.93 19.82 42.12 3.36
739 867 4.888823 GGAGAACTACCTAGGTACTCCTTG 59.111 50.000 31.73 19.86 42.12 3.61
740 868 5.508567 GAGAACTACCTAGGTACTCCTTGT 58.491 45.833 18.10 10.23 42.12 3.16
741 869 6.353429 GGAGAACTACCTAGGTACTCCTTGTA 60.353 46.154 31.73 11.10 42.12 2.41
742 870 7.037342 AGAACTACCTAGGTACTCCTTGTAA 57.963 40.000 18.10 0.00 42.12 2.41
743 871 7.118060 AGAACTACCTAGGTACTCCTTGTAAG 58.882 42.308 18.10 8.40 42.12 2.34
744 872 6.649041 ACTACCTAGGTACTCCTTGTAAGA 57.351 41.667 18.10 0.00 42.12 2.10
745 873 6.422333 ACTACCTAGGTACTCCTTGTAAGAC 58.578 44.000 18.10 0.00 42.12 3.01
746 874 4.268359 ACCTAGGTACTCCTTGTAAGACG 58.732 47.826 14.41 0.00 42.12 4.18
747 875 4.263683 ACCTAGGTACTCCTTGTAAGACGT 60.264 45.833 14.41 0.00 42.12 4.34
748 876 4.704057 CCTAGGTACTCCTTGTAAGACGTT 59.296 45.833 0.00 0.00 42.12 3.99
749 877 5.184671 CCTAGGTACTCCTTGTAAGACGTTT 59.815 44.000 0.00 0.00 42.12 3.60
750 878 5.541953 AGGTACTCCTTGTAAGACGTTTT 57.458 39.130 0.00 0.00 42.12 2.43
751 879 5.922053 AGGTACTCCTTGTAAGACGTTTTT 58.078 37.500 0.00 0.00 42.12 1.94
770 898 4.603989 TTTTGGACACTACATCGGTGTA 57.396 40.909 8.52 8.52 46.23 2.90
771 899 4.603989 TTTGGACACTACATCGGTGTAA 57.396 40.909 10.27 0.00 46.23 2.41
772 900 4.603989 TTGGACACTACATCGGTGTAAA 57.396 40.909 10.27 0.00 46.23 2.01
773 901 4.603989 TGGACACTACATCGGTGTAAAA 57.396 40.909 10.27 0.00 46.23 1.52
774 902 4.958509 TGGACACTACATCGGTGTAAAAA 58.041 39.130 10.27 0.00 46.23 1.94
796 924 7.486802 AAAAACGTTCTATATTATGGGACGG 57.513 36.000 20.75 7.11 0.00 4.79
797 925 6.409524 AAACGTTCTATATTATGGGACGGA 57.590 37.500 20.75 0.00 0.00 4.69
798 926 5.640189 ACGTTCTATATTATGGGACGGAG 57.360 43.478 20.75 0.00 0.00 4.63
799 927 4.461781 ACGTTCTATATTATGGGACGGAGG 59.538 45.833 20.75 0.00 0.00 4.30
800 928 4.142227 CGTTCTATATTATGGGACGGAGGG 60.142 50.000 11.85 0.00 0.00 4.30
801 929 4.959522 TCTATATTATGGGACGGAGGGA 57.040 45.455 0.00 0.00 0.00 4.20
802 930 4.607239 TCTATATTATGGGACGGAGGGAC 58.393 47.826 0.00 0.00 0.00 4.46
804 932 1.424638 ATTATGGGACGGAGGGACTG 58.575 55.000 0.00 0.00 41.55 3.51
807 935 3.391382 GGGACGGAGGGACTGGTG 61.391 72.222 0.00 0.00 41.55 4.17
817 945 0.618458 GGGACTGGTGACCTGCATTA 59.382 55.000 8.54 0.00 0.00 1.90
839 967 0.320697 ACGACCCAAGTTGGAGTAGC 59.679 55.000 24.06 7.61 40.96 3.58
840 968 0.320374 CGACCCAAGTTGGAGTAGCA 59.680 55.000 24.06 0.00 40.96 3.49
841 969 1.809684 GACCCAAGTTGGAGTAGCAC 58.190 55.000 24.06 4.20 40.96 4.40
842 970 1.071699 GACCCAAGTTGGAGTAGCACA 59.928 52.381 24.06 0.00 40.96 4.57
843 971 1.202770 ACCCAAGTTGGAGTAGCACAC 60.203 52.381 24.06 0.00 40.96 3.82
854 1130 0.708370 GTAGCACACACGATGACACG 59.292 55.000 0.00 0.00 39.31 4.49
881 1157 5.688621 CCAGGTTGATGAAATGCAATTATCG 59.311 40.000 0.00 0.00 33.67 2.92
882 1158 5.174398 CAGGTTGATGAAATGCAATTATCGC 59.826 40.000 0.00 0.00 33.67 4.58
954 1230 0.035317 AATCGCCTGTTGCTCTGTGA 59.965 50.000 0.00 0.00 38.05 3.58
955 1231 0.390866 ATCGCCTGTTGCTCTGTGAG 60.391 55.000 0.00 0.00 38.05 3.51
980 1261 6.448053 TCGCTCGCAGTACATATAATTTTC 57.552 37.500 0.00 0.00 0.00 2.29
1009 1290 1.419012 CATCCAATCCCAGCTCTGCTA 59.581 52.381 0.00 0.00 36.40 3.49
1025 1306 0.661020 GCTACACAACACACCCACAC 59.339 55.000 0.00 0.00 0.00 3.82
1026 1307 2.014574 GCTACACAACACACCCACACA 61.015 52.381 0.00 0.00 0.00 3.72
1027 1308 1.668751 CTACACAACACACCCACACAC 59.331 52.381 0.00 0.00 0.00 3.82
1041 1322 1.071471 CACACCTCCACTGACCACC 59.929 63.158 0.00 0.00 0.00 4.61
1046 1327 1.290324 CTCCACTGACCACCACTCG 59.710 63.158 0.00 0.00 0.00 4.18
1047 1328 1.152631 TCCACTGACCACCACTCGA 60.153 57.895 0.00 0.00 0.00 4.04
1050 1331 0.039074 CACTGACCACCACTCGAGAC 60.039 60.000 21.68 2.06 0.00 3.36
1425 1727 4.680237 CTGCGGCACTCGTTCCCA 62.680 66.667 0.00 0.00 41.72 4.37
1752 2054 4.380023 GCGAGGTTCTAGGAGCATATACTG 60.380 50.000 2.41 0.00 0.00 2.74
1761 2069 5.730296 AGGAGCATATACTGTATGACACC 57.270 43.478 10.51 7.50 0.00 4.16
1764 2072 3.895656 AGCATATACTGTATGACACCGGT 59.104 43.478 0.00 0.00 0.00 5.28
1775 2090 0.387929 GACACCGGTCTGTCTGTCAA 59.612 55.000 15.98 0.00 40.99 3.18
1790 2122 5.197451 GTCTGTCAAGGAGATTCTAGGAGA 58.803 45.833 0.00 0.00 0.00 3.71
1851 2188 2.094258 CACCGTCGTGAATGAATTGAGG 59.906 50.000 0.00 0.00 43.14 3.86
1874 2211 6.560304 AGGGTGACAAATAGAGATGGATGTAT 59.440 38.462 0.00 0.00 0.00 2.29
1933 2270 6.486657 TGAACTTTTTAGACTTGGATCACTGG 59.513 38.462 0.00 0.00 0.00 4.00
1977 2314 1.680249 GGTGGCAGAAGGGAACTGATC 60.680 57.143 0.00 0.00 42.68 2.92
2012 2349 6.404623 GCATAACTGAACATTACAGAATGGCA 60.405 38.462 0.00 0.00 45.83 4.92
2013 2350 7.537715 CATAACTGAACATTACAGAATGGCAA 58.462 34.615 0.00 0.00 45.83 4.52
2049 2387 4.142609 TCAGAAGTTGAGTGAAGCAAGT 57.857 40.909 0.00 0.00 0.00 3.16
2093 2431 8.559536 CATTGCTTGTTTAGACTCTCAAGTTAA 58.440 33.333 12.49 9.84 39.28 2.01
2137 3951 5.372343 TGCTTGCCTATAAGGAGAAATGA 57.628 39.130 0.00 0.00 37.67 2.57
2159 3973 2.887152 ACATTGCTTGTTTGGACTCTCC 59.113 45.455 0.00 0.00 33.74 3.71
2176 3991 4.187694 CTCTCCCTCAGTAGAAACATTGC 58.812 47.826 0.00 0.00 0.00 3.56
2179 3994 4.326826 TCCCTCAGTAGAAACATTGCTTG 58.673 43.478 0.00 0.00 0.00 4.01
2218 4033 5.941948 AAACAATACTAGTTCACCACAGC 57.058 39.130 0.00 0.00 0.00 4.40
2236 4051 5.411781 CACAGCCTAGTAAAAAGATCGTCT 58.588 41.667 0.00 0.00 0.00 4.18
2317 4132 3.198853 GGCCTTGTAATCTTCAGACTCCT 59.801 47.826 0.00 0.00 0.00 3.69
2318 4133 4.438148 GCCTTGTAATCTTCAGACTCCTC 58.562 47.826 0.00 0.00 0.00 3.71
2319 4134 4.682050 GCCTTGTAATCTTCAGACTCCTCC 60.682 50.000 0.00 0.00 0.00 4.30
2323 4138 4.707448 TGTAATCTTCAGACTCCTCCTCAC 59.293 45.833 0.00 0.00 0.00 3.51
2358 4173 8.891671 AAACTTATCATCTGCAAATTGTGTTT 57.108 26.923 0.00 0.00 0.00 2.83
2378 4193 5.009510 TGTTTGTATTTGTGGACCATCACTG 59.990 40.000 0.00 0.00 38.40 3.66
2406 4222 4.019321 CCTCCCAACCTCTTGTATCTTGAA 60.019 45.833 0.00 0.00 0.00 2.69
2411 4227 6.438763 CCAACCTCTTGTATCTTGAAACAAC 58.561 40.000 0.00 0.00 32.43 3.32
2431 4247 5.770162 ACAACAGAAAATTGGAGGGTTCTAG 59.230 40.000 0.00 0.00 0.00 2.43
2452 4268 5.359194 AGGAAATAATGGACAGACACGAT 57.641 39.130 0.00 0.00 0.00 3.73
2453 4269 6.479972 AGGAAATAATGGACAGACACGATA 57.520 37.500 0.00 0.00 0.00 2.92
2454 4270 6.281405 AGGAAATAATGGACAGACACGATAC 58.719 40.000 0.00 0.00 0.00 2.24
2518 4334 1.961394 GCATGTGCATCATCATTCCCT 59.039 47.619 0.00 0.00 41.59 4.20
2520 4336 3.057736 GCATGTGCATCATCATTCCCTAC 60.058 47.826 0.00 0.00 41.59 3.18
2524 4340 3.072184 GTGCATCATCATTCCCTACCTCT 59.928 47.826 0.00 0.00 0.00 3.69
2530 4346 0.759346 CATTCCCTACCTCTTCCCCG 59.241 60.000 0.00 0.00 0.00 5.73
2535 4351 0.616679 CCTACCTCTTCCCCGAACCA 60.617 60.000 0.00 0.00 0.00 3.67
2536 4352 1.497161 CTACCTCTTCCCCGAACCAT 58.503 55.000 0.00 0.00 0.00 3.55
2543 4359 2.965831 TCTTCCCCGAACCATGATCTAG 59.034 50.000 0.00 0.00 0.00 2.43
2545 4361 0.035458 CCCCGAACCATGATCTAGCC 59.965 60.000 0.00 0.00 0.00 3.93
2546 4362 0.035458 CCCGAACCATGATCTAGCCC 59.965 60.000 0.00 0.00 0.00 5.19
2551 4367 3.209410 GAACCATGATCTAGCCCTGTTG 58.791 50.000 0.00 0.00 0.00 3.33
2599 4418 4.396166 CCTCATCGAGCCAAGTTATTTGTT 59.604 41.667 0.00 0.00 34.87 2.83
2607 4427 6.254589 CGAGCCAAGTTATTTGTTGTTTTGAA 59.745 34.615 0.00 0.00 34.87 2.69
2616 4436 8.729528 GTTATTTGTTGTTTTGAATTTTTCGCC 58.270 29.630 0.00 0.00 0.00 5.54
2624 4444 2.043227 TGAATTTTTCGCCCCAACCTT 58.957 42.857 0.00 0.00 0.00 3.50
2630 4450 1.253100 TTCGCCCCAACCTTCATTTC 58.747 50.000 0.00 0.00 0.00 2.17
2631 4451 0.610785 TCGCCCCAACCTTCATTTCC 60.611 55.000 0.00 0.00 0.00 3.13
2638 4458 3.769300 CCCAACCTTCATTTCCTTTAGGG 59.231 47.826 0.00 0.00 35.41 3.53
2679 4499 4.520492 ACATTTGGTGGACTCTCATTTGTC 59.480 41.667 0.00 0.00 0.00 3.18
2716 4538 9.845740 ATGGATACTTGTAATTGCTTGTACATA 57.154 29.630 0.00 0.00 30.59 2.29
2722 4548 9.008965 ACTTGTAATTGCTTGTACATACATTGA 57.991 29.630 0.00 0.00 35.89 2.57
2753 4579 4.072131 TCAGTTTGCTTACCAAGGATGTC 58.928 43.478 0.00 0.00 34.34 3.06
2803 4637 4.655963 TCTAGAAAGTTGGCTGCTCAATT 58.344 39.130 0.00 0.00 0.00 2.32
2807 4641 3.655276 AAGTTGGCTGCTCAATTTGAG 57.345 42.857 19.92 19.92 46.90 3.02
2835 4669 1.308998 GGGACATAAATCCACAGCGG 58.691 55.000 0.00 0.00 40.96 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.495572 TGGTGAACATTTTAAGAAAGTGTTTTT 57.504 25.926 12.30 0.00 32.14 1.94
21 22 9.495572 TTGGTGAACATTTTAAGAAAGTGTTTT 57.504 25.926 12.30 0.00 32.14 2.43
22 23 9.495572 TTTGGTGAACATTTTAAGAAAGTGTTT 57.504 25.926 12.30 0.41 32.14 2.83
23 24 9.495572 TTTTGGTGAACATTTTAAGAAAGTGTT 57.504 25.926 11.24 11.24 33.37 3.32
24 25 8.931775 GTTTTGGTGAACATTTTAAGAAAGTGT 58.068 29.630 0.00 0.00 0.00 3.55
25 26 8.387354 GGTTTTGGTGAACATTTTAAGAAAGTG 58.613 33.333 0.00 0.00 0.00 3.16
26 27 7.276878 CGGTTTTGGTGAACATTTTAAGAAAGT 59.723 33.333 0.00 0.00 0.00 2.66
27 28 7.489757 TCGGTTTTGGTGAACATTTTAAGAAAG 59.510 33.333 0.00 0.00 0.00 2.62
28 29 7.321153 TCGGTTTTGGTGAACATTTTAAGAAA 58.679 30.769 0.00 0.00 0.00 2.52
29 30 6.864342 TCGGTTTTGGTGAACATTTTAAGAA 58.136 32.000 0.00 0.00 0.00 2.52
30 31 6.452494 TCGGTTTTGGTGAACATTTTAAGA 57.548 33.333 0.00 0.00 0.00 2.10
31 32 6.291374 CGTTCGGTTTTGGTGAACATTTTAAG 60.291 38.462 5.34 0.00 41.52 1.85
32 33 5.515626 CGTTCGGTTTTGGTGAACATTTTAA 59.484 36.000 5.34 0.00 41.52 1.52
33 34 5.035443 CGTTCGGTTTTGGTGAACATTTTA 58.965 37.500 5.34 0.00 41.52 1.52
34 35 3.860536 CGTTCGGTTTTGGTGAACATTTT 59.139 39.130 5.34 0.00 41.52 1.82
35 36 3.128938 TCGTTCGGTTTTGGTGAACATTT 59.871 39.130 5.34 0.00 41.52 2.32
36 37 2.683867 TCGTTCGGTTTTGGTGAACATT 59.316 40.909 5.34 0.00 41.52 2.71
37 38 2.289547 CTCGTTCGGTTTTGGTGAACAT 59.710 45.455 5.34 0.00 41.52 2.71
38 39 1.666700 CTCGTTCGGTTTTGGTGAACA 59.333 47.619 5.34 0.00 41.52 3.18
39 40 1.596220 GCTCGTTCGGTTTTGGTGAAC 60.596 52.381 0.00 0.00 38.83 3.18
40 41 0.658897 GCTCGTTCGGTTTTGGTGAA 59.341 50.000 0.00 0.00 0.00 3.18
41 42 1.161563 GGCTCGTTCGGTTTTGGTGA 61.162 55.000 0.00 0.00 0.00 4.02
42 43 1.281656 GGCTCGTTCGGTTTTGGTG 59.718 57.895 0.00 0.00 0.00 4.17
43 44 2.248835 CGGCTCGTTCGGTTTTGGT 61.249 57.895 0.00 0.00 0.00 3.67
44 45 2.554272 CGGCTCGTTCGGTTTTGG 59.446 61.111 0.00 0.00 0.00 3.28
45 46 2.554272 CCGGCTCGTTCGGTTTTG 59.446 61.111 0.00 0.00 42.33 2.44
117 118 0.746063 TCGGTTGTGGTACGTGTCTT 59.254 50.000 0.00 0.00 0.00 3.01
162 209 4.803426 GTGTCTCCTCCGCCTGCG 62.803 72.222 4.20 4.20 39.44 5.18
163 210 4.803426 CGTGTCTCCTCCGCCTGC 62.803 72.222 0.00 0.00 0.00 4.85
165 212 2.045131 GTACGTGTCTCCTCCGCCT 61.045 63.158 0.00 0.00 0.00 5.52
166 213 2.338015 TGTACGTGTCTCCTCCGCC 61.338 63.158 0.00 0.00 0.00 6.13
188 237 1.004560 CTCAGGAGCTTGGCGTTCA 60.005 57.895 0.00 0.00 0.00 3.18
189 238 1.743252 CCTCAGGAGCTTGGCGTTC 60.743 63.158 0.00 0.00 0.00 3.95
295 371 2.280457 GGCATCGTAGCTGCTCCC 60.280 66.667 4.91 0.00 39.60 4.30
351 428 1.004918 CCGGTTTCAGGACGCTTCT 60.005 57.895 0.00 0.00 0.00 2.85
353 430 1.147600 AACCGGTTTCAGGACGCTT 59.852 52.632 15.86 0.00 0.00 4.68
354 431 1.597027 CAACCGGTTTCAGGACGCT 60.597 57.895 19.55 0.00 0.00 5.07
355 432 2.613506 CCAACCGGTTTCAGGACGC 61.614 63.158 19.55 0.00 0.00 5.19
356 433 0.033781 TACCAACCGGTTTCAGGACG 59.966 55.000 24.77 9.96 46.31 4.79
358 435 0.397564 GGTACCAACCGGTTTCAGGA 59.602 55.000 24.77 9.14 46.31 3.86
359 436 2.936928 GGTACCAACCGGTTTCAGG 58.063 57.895 19.55 18.74 46.31 3.86
400 484 3.291101 TTACCAGGACGAGGCACGC 62.291 63.158 3.72 0.00 46.94 5.34
401 485 3.990034 CTGTTACCAGGACGAGGCACG 62.990 61.905 1.94 1.94 40.37 5.34
402 486 0.389948 CTGTTACCAGGACGAGGCAC 60.390 60.000 0.00 0.00 34.90 5.01
410 494 4.028131 ACATTCCGATACTGTTACCAGGA 58.972 43.478 0.00 0.00 43.36 3.86
412 496 4.804139 GTCACATTCCGATACTGTTACCAG 59.196 45.833 0.00 0.00 44.68 4.00
419 503 3.526931 ACTGGTCACATTCCGATACTG 57.473 47.619 0.00 0.00 0.00 2.74
422 506 4.707934 TCTTGTACTGGTCACATTCCGATA 59.292 41.667 0.00 0.00 0.00 2.92
423 507 3.513912 TCTTGTACTGGTCACATTCCGAT 59.486 43.478 0.00 0.00 0.00 4.18
424 508 2.894765 TCTTGTACTGGTCACATTCCGA 59.105 45.455 0.00 0.00 0.00 4.55
425 509 3.313012 TCTTGTACTGGTCACATTCCG 57.687 47.619 0.00 0.00 0.00 4.30
426 510 5.705441 TGATTTCTTGTACTGGTCACATTCC 59.295 40.000 0.00 0.00 0.00 3.01
435 519 7.452880 TTTTCTCCATGATTTCTTGTACTGG 57.547 36.000 0.00 0.00 0.00 4.00
445 536 5.389859 TTCACGCATTTTCTCCATGATTT 57.610 34.783 0.00 0.00 0.00 2.17
447 538 4.400251 ACATTCACGCATTTTCTCCATGAT 59.600 37.500 0.00 0.00 0.00 2.45
448 539 3.758023 ACATTCACGCATTTTCTCCATGA 59.242 39.130 0.00 0.00 0.00 3.07
454 546 4.566545 TTCACACATTCACGCATTTTCT 57.433 36.364 0.00 0.00 0.00 2.52
488 585 4.136511 TCGCCGGCGAATGTGCTA 62.137 61.111 46.56 23.99 46.01 3.49
499 596 1.095228 AATAACTGCCATGTCGCCGG 61.095 55.000 0.00 0.00 0.00 6.13
500 597 0.304705 GAATAACTGCCATGTCGCCG 59.695 55.000 0.00 0.00 0.00 6.46
501 598 0.304705 CGAATAACTGCCATGTCGCC 59.695 55.000 0.00 0.00 0.00 5.54
502 599 0.304705 CCGAATAACTGCCATGTCGC 59.695 55.000 0.00 0.00 0.00 5.19
503 600 1.651987 ACCGAATAACTGCCATGTCG 58.348 50.000 0.00 0.00 0.00 4.35
504 601 3.555956 CACTACCGAATAACTGCCATGTC 59.444 47.826 0.00 0.00 0.00 3.06
505 602 3.196901 TCACTACCGAATAACTGCCATGT 59.803 43.478 0.00 0.00 0.00 3.21
555 652 4.910585 GCTGGGGTCGCCATACGG 62.911 72.222 9.40 0.00 43.89 4.02
592 697 1.344065 TCCCACGGACAGAGCTTTTA 58.656 50.000 0.00 0.00 0.00 1.52
593 698 0.472471 TTCCCACGGACAGAGCTTTT 59.528 50.000 0.00 0.00 0.00 2.27
594 699 0.693049 ATTCCCACGGACAGAGCTTT 59.307 50.000 0.00 0.00 0.00 3.51
623 748 3.987547 TGTGTAAATTTCCGTGACCGTA 58.012 40.909 0.00 0.00 0.00 4.02
658 786 4.684703 GCGAAACATTCCTACGTATAGCAT 59.315 41.667 0.00 0.00 0.00 3.79
659 787 4.046462 GCGAAACATTCCTACGTATAGCA 58.954 43.478 0.00 0.00 0.00 3.49
660 788 3.427863 GGCGAAACATTCCTACGTATAGC 59.572 47.826 0.00 0.00 0.00 2.97
661 789 3.985925 GGGCGAAACATTCCTACGTATAG 59.014 47.826 0.00 0.00 0.00 1.31
662 790 3.638160 AGGGCGAAACATTCCTACGTATA 59.362 43.478 0.00 0.00 0.00 1.47
681 809 1.945387 CGACATGGATTCTGTCAGGG 58.055 55.000 0.00 0.00 42.52 4.45
711 839 2.308690 ACCTAGGTAGTTCTCCATCGC 58.691 52.381 14.41 0.00 0.00 4.58
712 840 4.716794 AGTACCTAGGTAGTTCTCCATCG 58.283 47.826 22.37 0.00 30.79 3.84
748 876 3.811083 ACACCGATGTAGTGTCCAAAAA 58.189 40.909 0.00 0.00 45.13 1.94
749 877 3.478857 ACACCGATGTAGTGTCCAAAA 57.521 42.857 0.00 0.00 45.13 2.44
750 878 4.603989 TTACACCGATGTAGTGTCCAAA 57.396 40.909 0.00 0.00 45.13 3.28
751 879 4.603989 TTTACACCGATGTAGTGTCCAA 57.396 40.909 0.00 0.00 45.13 3.53
752 880 4.603989 TTTTACACCGATGTAGTGTCCA 57.396 40.909 0.00 0.00 45.13 4.02
772 900 7.274447 TCCGTCCCATAATATAGAACGTTTTT 58.726 34.615 0.46 0.00 0.00 1.94
773 901 6.819284 TCCGTCCCATAATATAGAACGTTTT 58.181 36.000 0.46 0.00 0.00 2.43
774 902 6.409524 TCCGTCCCATAATATAGAACGTTT 57.590 37.500 0.46 0.00 0.00 3.60
775 903 5.047519 CCTCCGTCCCATAATATAGAACGTT 60.048 44.000 0.00 0.00 0.00 3.99
776 904 4.461781 CCTCCGTCCCATAATATAGAACGT 59.538 45.833 0.00 0.00 0.00 3.99
777 905 4.142227 CCCTCCGTCCCATAATATAGAACG 60.142 50.000 0.00 0.00 0.00 3.95
778 906 5.021458 TCCCTCCGTCCCATAATATAGAAC 58.979 45.833 0.00 0.00 0.00 3.01
779 907 5.021458 GTCCCTCCGTCCCATAATATAGAA 58.979 45.833 0.00 0.00 0.00 2.10
780 908 4.294168 AGTCCCTCCGTCCCATAATATAGA 59.706 45.833 0.00 0.00 0.00 1.98
781 909 4.402793 CAGTCCCTCCGTCCCATAATATAG 59.597 50.000 0.00 0.00 0.00 1.31
782 910 4.350245 CAGTCCCTCCGTCCCATAATATA 58.650 47.826 0.00 0.00 0.00 0.86
783 911 3.173965 CAGTCCCTCCGTCCCATAATAT 58.826 50.000 0.00 0.00 0.00 1.28
784 912 2.605257 CAGTCCCTCCGTCCCATAATA 58.395 52.381 0.00 0.00 0.00 0.98
785 913 1.424638 CAGTCCCTCCGTCCCATAAT 58.575 55.000 0.00 0.00 0.00 1.28
786 914 0.689745 CCAGTCCCTCCGTCCCATAA 60.690 60.000 0.00 0.00 0.00 1.90
787 915 1.075525 CCAGTCCCTCCGTCCCATA 60.076 63.158 0.00 0.00 0.00 2.74
788 916 2.365635 CCAGTCCCTCCGTCCCAT 60.366 66.667 0.00 0.00 0.00 4.00
789 917 3.923645 ACCAGTCCCTCCGTCCCA 61.924 66.667 0.00 0.00 0.00 4.37
790 918 3.391382 CACCAGTCCCTCCGTCCC 61.391 72.222 0.00 0.00 0.00 4.46
791 919 2.283676 TCACCAGTCCCTCCGTCC 60.284 66.667 0.00 0.00 0.00 4.79
792 920 2.647158 GGTCACCAGTCCCTCCGTC 61.647 68.421 0.00 0.00 0.00 4.79
793 921 2.603776 GGTCACCAGTCCCTCCGT 60.604 66.667 0.00 0.00 0.00 4.69
794 922 2.283966 AGGTCACCAGTCCCTCCG 60.284 66.667 0.00 0.00 0.00 4.63
795 923 2.960688 GCAGGTCACCAGTCCCTCC 61.961 68.421 0.00 0.00 0.00 4.30
796 924 1.557269 ATGCAGGTCACCAGTCCCTC 61.557 60.000 0.00 0.00 0.00 4.30
797 925 1.136329 AATGCAGGTCACCAGTCCCT 61.136 55.000 0.00 0.00 0.00 4.20
798 926 0.618458 TAATGCAGGTCACCAGTCCC 59.382 55.000 0.00 0.00 0.00 4.46
799 927 2.014068 GCTAATGCAGGTCACCAGTCC 61.014 57.143 0.00 0.00 39.41 3.85
800 928 1.339055 TGCTAATGCAGGTCACCAGTC 60.339 52.381 0.00 0.00 45.31 3.51
801 929 0.692476 TGCTAATGCAGGTCACCAGT 59.308 50.000 0.00 0.00 45.31 4.00
802 930 3.556817 TGCTAATGCAGGTCACCAG 57.443 52.632 0.00 0.00 45.31 4.00
817 945 1.071471 CTCCAACTTGGGTCGTGCT 59.929 57.895 8.01 0.00 38.32 4.40
839 967 1.282248 GGGTCGTGTCATCGTGTGTG 61.282 60.000 0.00 0.00 0.00 3.82
840 968 1.006571 GGGTCGTGTCATCGTGTGT 60.007 57.895 0.00 0.00 0.00 3.72
841 969 1.006688 TGGGTCGTGTCATCGTGTG 60.007 57.895 0.00 0.00 0.00 3.82
842 970 1.289066 CTGGGTCGTGTCATCGTGT 59.711 57.895 0.00 0.00 0.00 4.49
843 971 1.446099 CCTGGGTCGTGTCATCGTG 60.446 63.158 0.00 0.00 0.00 4.35
854 1130 2.170166 TGCATTTCATCAACCTGGGTC 58.830 47.619 0.00 0.00 0.00 4.46
954 1230 0.955178 ATATGTACTGCGAGCGAGCT 59.045 50.000 0.00 0.00 38.13 4.09
955 1231 2.613730 TATATGTACTGCGAGCGAGC 57.386 50.000 0.00 0.00 37.71 5.03
956 1232 6.400091 GGAAAATTATATGTACTGCGAGCGAG 60.400 42.308 0.00 0.00 0.00 5.03
957 1233 5.404366 GGAAAATTATATGTACTGCGAGCGA 59.596 40.000 0.00 0.00 0.00 4.93
958 1234 5.176774 TGGAAAATTATATGTACTGCGAGCG 59.823 40.000 0.00 0.00 0.00 5.03
980 1261 0.607489 GGGATTGGATGGAGCGATGG 60.607 60.000 0.00 0.00 0.00 3.51
1009 1290 0.963355 GGTGTGTGGGTGTGTTGTGT 60.963 55.000 0.00 0.00 0.00 3.72
1025 1306 1.071471 GTGGTGGTCAGTGGAGGTG 59.929 63.158 0.00 0.00 0.00 4.00
1026 1307 1.074471 AGTGGTGGTCAGTGGAGGT 60.074 57.895 0.00 0.00 0.00 3.85
1027 1308 1.674057 GAGTGGTGGTCAGTGGAGG 59.326 63.158 0.00 0.00 0.00 4.30
1041 1322 3.053455 GGTTTCTCACTTGTCTCGAGTG 58.947 50.000 13.13 3.70 44.72 3.51
1046 1327 4.083590 GCTTCATGGTTTCTCACTTGTCTC 60.084 45.833 0.00 0.00 0.00 3.36
1047 1328 3.817647 GCTTCATGGTTTCTCACTTGTCT 59.182 43.478 0.00 0.00 0.00 3.41
1050 1331 3.152341 AGGCTTCATGGTTTCTCACTTG 58.848 45.455 0.00 0.00 0.00 3.16
1184 1474 0.949105 GTTGTACTCGTGGTGGGCTG 60.949 60.000 0.00 0.00 0.00 4.85
1185 1475 1.370064 GTTGTACTCGTGGTGGGCT 59.630 57.895 0.00 0.00 0.00 5.19
1186 1476 2.025418 CGTTGTACTCGTGGTGGGC 61.025 63.158 0.00 0.00 0.00 5.36
1187 1477 2.025418 GCGTTGTACTCGTGGTGGG 61.025 63.158 11.25 0.00 0.00 4.61
1188 1478 2.025418 GGCGTTGTACTCGTGGTGG 61.025 63.158 11.25 0.00 0.00 4.61
1189 1479 1.006571 AGGCGTTGTACTCGTGGTG 60.007 57.895 11.25 0.00 0.00 4.17
1190 1480 1.288127 GAGGCGTTGTACTCGTGGT 59.712 57.895 11.25 0.00 0.00 4.16
1191 1481 1.445582 GGAGGCGTTGTACTCGTGG 60.446 63.158 11.25 0.00 34.58 4.94
1192 1482 1.800315 CGGAGGCGTTGTACTCGTG 60.800 63.158 11.25 0.00 34.58 4.35
1193 1483 2.564975 CGGAGGCGTTGTACTCGT 59.435 61.111 11.25 0.00 34.58 4.18
1194 1484 2.879462 GCGGAGGCGTTGTACTCG 60.879 66.667 0.00 0.40 34.58 4.18
1656 1958 1.808390 CGGCGGGTAGTAGTTGCAC 60.808 63.158 0.00 0.00 0.00 4.57
1733 2035 7.176865 TGTCATACAGTATATGCTCCTAGAACC 59.823 40.741 0.00 0.00 0.00 3.62
1734 2036 8.024285 GTGTCATACAGTATATGCTCCTAGAAC 58.976 40.741 0.00 0.00 0.00 3.01
1761 2069 1.248486 TCTCCTTGACAGACAGACCG 58.752 55.000 0.00 0.00 0.00 4.79
1764 2072 4.952957 CCTAGAATCTCCTTGACAGACAGA 59.047 45.833 0.00 0.00 0.00 3.41
1775 2090 8.811994 GCTTACAATATTCTCCTAGAATCTCCT 58.188 37.037 5.46 0.00 40.75 3.69
1790 2122 7.772292 TCTGCTCTCAAATCAGCTTACAATATT 59.228 33.333 0.00 0.00 36.53 1.28
1841 2178 6.962182 TCTCTATTTGTCACCCTCAATTCAT 58.038 36.000 0.00 0.00 0.00 2.57
1851 2188 7.220030 ACATACATCCATCTCTATTTGTCACC 58.780 38.462 0.00 0.00 0.00 4.02
1874 2211 3.247411 CACAGCAACGACATTGAGTTACA 59.753 43.478 0.00 0.00 41.23 2.41
1933 2270 3.243177 GCAGATTACGACGACTTCCAATC 59.757 47.826 0.00 1.07 0.00 2.67
2013 2350 7.816031 CTCAACTTCTGATTATGGCAACATTTT 59.184 33.333 0.00 0.00 44.69 1.82
2049 2387 5.893255 AGCAATGAAGATTACAAGGCCAATA 59.107 36.000 5.01 0.00 0.00 1.90
2093 2431 3.726557 TGAAGATCACAAGGCCAATCT 57.273 42.857 5.01 2.03 0.00 2.40
2137 3951 5.768678 GGGAGAGTCCAAACAAGCAATGTT 61.769 45.833 2.38 2.38 43.07 2.71
2151 3965 3.432378 TGTTTCTACTGAGGGAGAGTCC 58.568 50.000 0.00 0.00 35.23 3.85
2159 3973 3.119708 GCCAAGCAATGTTTCTACTGAGG 60.120 47.826 0.00 0.00 0.00 3.86
2176 3991 2.430546 TTAAACAACCATGCGCCAAG 57.569 45.000 4.18 0.00 0.00 3.61
2179 3994 2.866762 TGTTTTTAAACAACCATGCGCC 59.133 40.909 4.18 0.00 45.17 6.53
2204 4019 5.401531 TTTACTAGGCTGTGGTGAACTAG 57.598 43.478 0.00 0.00 37.67 2.57
2217 4032 5.408356 TCACAGACGATCTTTTTACTAGGC 58.592 41.667 0.00 0.00 0.00 3.93
2218 4033 9.021863 GTTATCACAGACGATCTTTTTACTAGG 57.978 37.037 0.00 0.00 0.00 3.02
2262 4077 6.073058 GCTTCACTCAACTGTTGATATTGACA 60.073 38.462 22.28 13.70 39.30 3.58
2358 4173 3.081061 GCAGTGATGGTCCACAAATACA 58.919 45.455 0.00 0.00 39.42 2.29
2406 4222 4.962362 AGAACCCTCCAATTTTCTGTTGTT 59.038 37.500 0.00 0.00 0.00 2.83
2411 4227 5.179452 TCCTAGAACCCTCCAATTTTCTG 57.821 43.478 0.00 0.00 30.89 3.02
2431 4247 6.281405 AGTATCGTGTCTGTCCATTATTTCC 58.719 40.000 0.00 0.00 0.00 3.13
2518 4334 1.200519 CATGGTTCGGGGAAGAGGTA 58.799 55.000 0.00 0.00 0.00 3.08
2520 4336 0.839946 ATCATGGTTCGGGGAAGAGG 59.160 55.000 0.00 0.00 0.00 3.69
2524 4340 1.416401 GCTAGATCATGGTTCGGGGAA 59.584 52.381 0.00 0.00 0.00 3.97
2530 4346 3.118261 TCAACAGGGCTAGATCATGGTTC 60.118 47.826 0.00 0.00 0.00 3.62
2535 4351 6.949117 AATAGATCAACAGGGCTAGATCAT 57.051 37.500 0.00 0.00 39.39 2.45
2536 4352 6.753913 AAATAGATCAACAGGGCTAGATCA 57.246 37.500 0.00 0.00 39.39 2.92
2543 4359 6.460261 GGCTAAGAAAAATAGATCAACAGGGC 60.460 42.308 0.00 0.00 0.00 5.19
2545 4361 6.830838 AGGGCTAAGAAAAATAGATCAACAGG 59.169 38.462 0.00 0.00 0.00 4.00
2546 4362 7.337942 ACAGGGCTAAGAAAAATAGATCAACAG 59.662 37.037 0.00 0.00 0.00 3.16
2551 4367 6.066054 GCACAGGGCTAAGAAAAATAGATC 57.934 41.667 0.00 0.00 40.25 2.75
2575 4394 4.191544 CAAATAACTTGGCTCGATGAGGA 58.808 43.478 0.00 0.00 0.00 3.71
2576 4395 3.941483 ACAAATAACTTGGCTCGATGAGG 59.059 43.478 0.00 0.00 39.56 3.86
2599 4418 3.543680 TGGGGCGAAAAATTCAAAACA 57.456 38.095 0.00 0.00 0.00 2.83
2607 4427 1.710816 TGAAGGTTGGGGCGAAAAAT 58.289 45.000 0.00 0.00 0.00 1.82
2616 4436 3.769300 CCCTAAAGGAAATGAAGGTTGGG 59.231 47.826 0.00 0.00 38.24 4.12
2624 4444 9.983024 TTGATTAATGTACCCTAAAGGAAATGA 57.017 29.630 0.00 0.00 39.89 2.57
2652 4472 4.437682 TGAGAGTCCACCAAATGTCTTT 57.562 40.909 0.00 0.00 0.00 2.52
2654 4474 4.647564 AATGAGAGTCCACCAAATGTCT 57.352 40.909 0.00 0.00 0.00 3.41
2655 4475 4.520492 ACAAATGAGAGTCCACCAAATGTC 59.480 41.667 0.00 0.00 0.00 3.06
2656 4476 4.473444 ACAAATGAGAGTCCACCAAATGT 58.527 39.130 0.00 0.00 0.00 2.71
2657 4477 5.051891 GACAAATGAGAGTCCACCAAATG 57.948 43.478 0.00 0.00 0.00 2.32
2670 4490 4.093408 CCATGTACAGTTCGGACAAATGAG 59.907 45.833 0.33 0.00 0.00 2.90
2671 4491 4.000325 CCATGTACAGTTCGGACAAATGA 59.000 43.478 0.33 0.00 0.00 2.57
2679 4499 4.755411 ACAAGTATCCATGTACAGTTCGG 58.245 43.478 0.33 0.00 0.00 4.30
2680 4500 8.328146 CAATTACAAGTATCCATGTACAGTTCG 58.672 37.037 0.33 0.00 32.07 3.95
2729 4555 5.079643 ACATCCTTGGTAAGCAAACTGAAT 58.920 37.500 0.00 0.00 0.00 2.57
2730 4556 4.469657 ACATCCTTGGTAAGCAAACTGAA 58.530 39.130 0.00 0.00 0.00 3.02
2731 4557 4.072131 GACATCCTTGGTAAGCAAACTGA 58.928 43.478 0.00 0.00 0.00 3.41
2773 4607 4.022935 CAGCCAACTTTCTAGAATGCACAA 60.023 41.667 16.19 0.00 0.00 3.33
2774 4608 3.503363 CAGCCAACTTTCTAGAATGCACA 59.497 43.478 16.19 0.00 0.00 4.57
2803 4637 7.234371 TGGATTTATGTCCCACAAATTTCTCAA 59.766 33.333 0.00 0.00 37.48 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.