Multiple sequence alignment - TraesCS6D01G327500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G327500 chr6D 100.000 2872 0 0 1 2872 432822775 432825646 0.000000e+00 5304.0
1 TraesCS6D01G327500 chr6D 90.116 172 14 3 3 172 446133963 446134133 1.340000e-53 220.0
2 TraesCS6D01G327500 chr6D 74.101 417 68 33 1243 1651 432852866 432853250 4.990000e-28 135.0
3 TraesCS6D01G327500 chr6A 88.375 1858 127 46 163 1969 578941275 578943094 0.000000e+00 2152.0
4 TraesCS6D01G327500 chr6A 73.621 417 70 32 1243 1651 578954863 578955247 1.080000e-24 124.0
5 TraesCS6D01G327500 chr6B 90.496 1452 111 16 619 2051 652944868 652946311 0.000000e+00 1892.0
6 TraesCS6D01G327500 chr6B 91.049 324 27 2 2097 2419 652946312 652946634 1.220000e-118 436.0
7 TraesCS6D01G327500 chr6B 87.725 334 17 14 2562 2872 652946695 652947027 4.520000e-98 368.0
8 TraesCS6D01G327500 chr6B 73.621 417 70 25 1243 1651 652983780 652984164 1.080000e-24 124.0
9 TraesCS6D01G327500 chr6B 92.857 84 6 0 2488 2571 711692417 711692334 3.890000e-24 122.0
10 TraesCS6D01G327500 chr7D 90.857 175 13 3 1 173 576644868 576645041 6.190000e-57 231.0
11 TraesCS6D01G327500 chr7D 92.500 160 12 0 1 160 375298734 375298575 2.230000e-56 230.0
12 TraesCS6D01G327500 chr7D 90.964 166 14 1 1 166 616465744 616465908 3.720000e-54 222.0
13 TraesCS6D01G327500 chr7D 89.796 98 10 0 2472 2569 398878056 398877959 3.000000e-25 126.0
14 TraesCS6D01G327500 chr5A 91.667 168 11 3 1 166 446600148 446599982 2.230000e-56 230.0
15 TraesCS6D01G327500 chr5A 80.612 98 18 1 2110 2207 662396249 662396153 1.100000e-09 75.0
16 TraesCS6D01G327500 chr5B 91.124 169 13 2 1 167 699409715 699409883 8.010000e-56 228.0
17 TraesCS6D01G327500 chr3B 91.124 169 12 3 1 167 49156451 49156618 2.880000e-55 226.0
18 TraesCS6D01G327500 chr3B 88.660 97 11 0 2472 2568 255233969 255233873 5.030000e-23 119.0
19 TraesCS6D01G327500 chr3B 87.879 99 12 0 2472 2570 695558907 695559005 1.810000e-22 117.0
20 TraesCS6D01G327500 chr3D 91.463 164 12 2 1 162 97120640 97120803 1.040000e-54 224.0
21 TraesCS6D01G327500 chr3D 89.691 97 10 0 2472 2568 574442682 574442778 1.080000e-24 124.0
22 TraesCS6D01G327500 chr3D 84.112 107 9 7 2159 2260 43655022 43654919 2.360000e-16 97.1
23 TraesCS6D01G327500 chr7A 89.655 174 15 3 1 172 649075668 649075496 4.820000e-53 219.0
24 TraesCS6D01G327500 chr2B 90.099 101 9 1 2472 2571 262902171 262902271 2.320000e-26 130.0
25 TraesCS6D01G327500 chr2B 91.111 90 8 0 2483 2572 601206932 601206843 3.890000e-24 122.0
26 TraesCS6D01G327500 chr2B 79.720 143 29 0 2091 2233 786258634 786258776 1.410000e-18 104.0
27 TraesCS6D01G327500 chr2D 87.755 98 12 0 2472 2569 160195455 160195552 6.500000e-22 115.0
28 TraesCS6D01G327500 chr1B 86.667 105 12 2 2468 2571 19070200 19070097 6.500000e-22 115.0
29 TraesCS6D01G327500 chr1A 78.632 117 23 2 2094 2209 342445488 342445603 3.070000e-10 76.8
30 TraesCS6D01G327500 chr4D 81.319 91 15 2 2153 2241 302395974 302396064 3.970000e-09 73.1
31 TraesCS6D01G327500 chr2A 86.538 52 7 0 2138 2189 585799450 585799399 1.110000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G327500 chr6D 432822775 432825646 2871 False 5304.000000 5304 100.000000 1 2872 1 chr6D.!!$F1 2871
1 TraesCS6D01G327500 chr6A 578941275 578943094 1819 False 2152.000000 2152 88.375000 163 1969 1 chr6A.!!$F1 1806
2 TraesCS6D01G327500 chr6B 652944868 652947027 2159 False 898.666667 1892 89.756667 619 2872 3 chr6B.!!$F2 2253

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.031449 TTGGCGCTAGTTGTTTTGCC 59.969 50.0 7.64 0.0 42.76 4.52 F
156 157 0.032952 ACACGTGTGGCAGTTATCGT 59.967 50.0 22.71 0.0 34.19 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 1835 0.248866 GCTGGAACAAAACCACACGG 60.249 55.0 0.00 0.0 38.70 4.94 R
1885 1947 0.965439 TTTGGCGGCAGCAAAAGTAT 59.035 45.0 12.87 0.0 41.08 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.784701 ACATAGACGTGTGAGATGGAC 57.215 47.619 0.00 0.00 0.00 4.02
28 29 2.427453 ACATAGACGTGTGAGATGGACC 59.573 50.000 0.00 0.00 0.00 4.46
29 30 1.092348 TAGACGTGTGAGATGGACCG 58.908 55.000 0.00 0.00 0.00 4.79
30 31 1.805945 GACGTGTGAGATGGACCGC 60.806 63.158 0.00 0.00 0.00 5.68
31 32 2.261361 CGTGTGAGATGGACCGCA 59.739 61.111 0.00 0.00 0.00 5.69
32 33 1.374125 CGTGTGAGATGGACCGCAA 60.374 57.895 0.00 0.00 0.00 4.85
33 34 1.354337 CGTGTGAGATGGACCGCAAG 61.354 60.000 0.00 0.00 0.00 4.01
34 35 0.037326 GTGTGAGATGGACCGCAAGA 60.037 55.000 0.00 0.00 43.02 3.02
35 36 0.684535 TGTGAGATGGACCGCAAGAA 59.315 50.000 0.00 0.00 43.02 2.52
36 37 1.338105 TGTGAGATGGACCGCAAGAAG 60.338 52.381 0.00 0.00 43.02 2.85
37 38 1.066858 GTGAGATGGACCGCAAGAAGA 60.067 52.381 0.00 0.00 43.02 2.87
38 39 1.623311 TGAGATGGACCGCAAGAAGAA 59.377 47.619 0.00 0.00 43.02 2.52
39 40 2.038426 TGAGATGGACCGCAAGAAGAAA 59.962 45.455 0.00 0.00 43.02 2.52
40 41 3.074412 GAGATGGACCGCAAGAAGAAAA 58.926 45.455 0.00 0.00 43.02 2.29
41 42 3.486383 AGATGGACCGCAAGAAGAAAAA 58.514 40.909 0.00 0.00 43.02 1.94
61 62 3.637714 CGTGTTGGCGCTAGTTGT 58.362 55.556 7.64 0.00 0.00 3.32
62 63 1.938861 CGTGTTGGCGCTAGTTGTT 59.061 52.632 7.64 0.00 0.00 2.83
63 64 0.306533 CGTGTTGGCGCTAGTTGTTT 59.693 50.000 7.64 0.00 0.00 2.83
64 65 1.268335 CGTGTTGGCGCTAGTTGTTTT 60.268 47.619 7.64 0.00 0.00 2.43
65 66 2.116366 GTGTTGGCGCTAGTTGTTTTG 58.884 47.619 7.64 0.00 0.00 2.44
66 67 1.128513 GTTGGCGCTAGTTGTTTTGC 58.871 50.000 7.64 0.00 0.00 3.68
67 68 0.031449 TTGGCGCTAGTTGTTTTGCC 59.969 50.000 7.64 0.00 42.76 4.52
68 69 0.821711 TGGCGCTAGTTGTTTTGCCT 60.822 50.000 7.64 0.00 42.87 4.75
69 70 1.161843 GGCGCTAGTTGTTTTGCCTA 58.838 50.000 7.64 0.00 39.38 3.93
70 71 1.135774 GGCGCTAGTTGTTTTGCCTAC 60.136 52.381 7.64 0.00 39.38 3.18
71 72 1.533731 GCGCTAGTTGTTTTGCCTACA 59.466 47.619 0.00 0.00 0.00 2.74
72 73 2.664698 GCGCTAGTTGTTTTGCCTACAC 60.665 50.000 0.00 0.00 0.00 2.90
73 74 2.546368 CGCTAGTTGTTTTGCCTACACA 59.454 45.455 0.00 0.00 0.00 3.72
74 75 3.188460 CGCTAGTTGTTTTGCCTACACAT 59.812 43.478 0.00 0.00 0.00 3.21
75 76 4.390603 CGCTAGTTGTTTTGCCTACACATA 59.609 41.667 0.00 0.00 0.00 2.29
76 77 5.445939 CGCTAGTTGTTTTGCCTACACATAG 60.446 44.000 0.00 0.00 0.00 2.23
93 94 4.643387 GGCGTGTGGGCTGGTCTT 62.643 66.667 0.00 0.00 38.40 3.01
94 95 3.050275 GCGTGTGGGCTGGTCTTC 61.050 66.667 0.00 0.00 0.00 2.87
95 96 2.743718 CGTGTGGGCTGGTCTTCT 59.256 61.111 0.00 0.00 0.00 2.85
96 97 1.071471 CGTGTGGGCTGGTCTTCTT 59.929 57.895 0.00 0.00 0.00 2.52
97 98 0.320374 CGTGTGGGCTGGTCTTCTTA 59.680 55.000 0.00 0.00 0.00 2.10
98 99 1.673033 CGTGTGGGCTGGTCTTCTTAG 60.673 57.143 0.00 0.00 0.00 2.18
99 100 1.623811 GTGTGGGCTGGTCTTCTTAGA 59.376 52.381 0.00 0.00 0.00 2.10
113 114 4.569162 TCTTCTTAGACACCACACAAAACG 59.431 41.667 0.00 0.00 0.00 3.60
114 115 3.864243 TCTTAGACACCACACAAAACGT 58.136 40.909 0.00 0.00 0.00 3.99
123 124 4.647825 ACAAAACGTGTGGGCAGA 57.352 50.000 0.00 0.00 39.72 4.26
124 125 3.109847 ACAAAACGTGTGGGCAGAT 57.890 47.368 0.00 0.00 39.72 2.90
125 126 0.951558 ACAAAACGTGTGGGCAGATC 59.048 50.000 0.00 0.00 39.72 2.75
126 127 0.240945 CAAAACGTGTGGGCAGATCC 59.759 55.000 0.00 0.00 0.00 3.36
135 136 4.142780 GGCAGATCCCTTAACGCC 57.857 61.111 0.00 0.00 0.00 5.68
136 137 1.526225 GGCAGATCCCTTAACGCCC 60.526 63.158 0.00 0.00 33.31 6.13
137 138 1.223487 GCAGATCCCTTAACGCCCA 59.777 57.895 0.00 0.00 0.00 5.36
138 139 1.095807 GCAGATCCCTTAACGCCCAC 61.096 60.000 0.00 0.00 0.00 4.61
139 140 0.251916 CAGATCCCTTAACGCCCACA 59.748 55.000 0.00 0.00 0.00 4.17
140 141 0.252197 AGATCCCTTAACGCCCACAC 59.748 55.000 0.00 0.00 0.00 3.82
141 142 1.078708 ATCCCTTAACGCCCACACG 60.079 57.895 0.00 0.00 39.50 4.49
155 156 0.438445 CACACGTGTGGCAGTTATCG 59.562 55.000 35.65 10.61 42.10 2.92
156 157 0.032952 ACACGTGTGGCAGTTATCGT 59.967 50.000 22.71 0.00 34.19 3.73
157 158 0.713883 CACGTGTGGCAGTTATCGTC 59.286 55.000 7.58 0.00 0.00 4.20
158 159 0.731514 ACGTGTGGCAGTTATCGTCG 60.732 55.000 0.00 0.00 0.00 5.12
159 160 0.731514 CGTGTGGCAGTTATCGTCGT 60.732 55.000 0.00 0.00 0.00 4.34
160 161 0.989890 GTGTGGCAGTTATCGTCGTC 59.010 55.000 0.00 0.00 0.00 4.20
161 162 0.108992 TGTGGCAGTTATCGTCGTCC 60.109 55.000 0.00 0.00 0.00 4.79
167 168 3.306818 GCAGTTATCGTCGTCCCTAATC 58.693 50.000 0.00 0.00 0.00 1.75
217 218 9.601217 AAATACTATGACTAGGTTAGCAACTTG 57.399 33.333 0.00 0.00 0.00 3.16
224 225 0.663269 GGTTAGCAACTTGGCGCAAC 60.663 55.000 10.83 0.70 39.27 4.17
237 238 2.114825 GGCGCAACATCGTAGTAGTAC 58.885 52.381 10.83 0.00 0.00 2.73
244 245 5.570344 CAACATCGTAGTAGTACTGGACAG 58.430 45.833 13.29 8.81 0.00 3.51
247 248 6.409704 ACATCGTAGTAGTACTGGACAGTTA 58.590 40.000 13.29 0.00 42.54 2.24
301 314 5.351458 GGTTTCATATGGGCATTCTTTCAC 58.649 41.667 2.13 0.00 0.00 3.18
319 332 3.985008 TCACGAGCTTTGCTACACTTAA 58.015 40.909 0.00 0.00 39.88 1.85
333 346 8.036273 TGCTACACTTAAGTAAAATTACCTGC 57.964 34.615 8.04 2.64 34.19 4.85
335 348 7.063780 GCTACACTTAAGTAAAATTACCTGCGA 59.936 37.037 8.04 0.00 34.19 5.10
338 351 7.443272 ACACTTAAGTAAAATTACCTGCGAAGT 59.557 33.333 8.04 0.00 34.19 3.01
340 353 9.492973 ACTTAAGTAAAATTACCTGCGAAGTTA 57.507 29.630 6.26 0.00 34.19 2.24
343 356 6.782150 AGTAAAATTACCTGCGAAGTTATGC 58.218 36.000 0.00 0.00 34.19 3.14
344 357 5.637006 AAAATTACCTGCGAAGTTATGCA 57.363 34.783 0.00 0.00 39.13 3.96
345 358 5.835113 AAATTACCTGCGAAGTTATGCAT 57.165 34.783 3.79 3.79 40.89 3.96
346 359 4.818534 ATTACCTGCGAAGTTATGCATG 57.181 40.909 10.16 3.61 40.89 4.06
347 360 2.113860 ACCTGCGAAGTTATGCATGT 57.886 45.000 10.16 4.18 40.89 3.21
348 361 1.739466 ACCTGCGAAGTTATGCATGTG 59.261 47.619 10.16 0.00 40.89 3.21
349 362 1.532505 CCTGCGAAGTTATGCATGTGC 60.533 52.381 10.16 4.69 40.89 4.57
353 367 2.032550 GCGAAGTTATGCATGTGCTGAT 59.967 45.455 10.16 0.00 42.66 2.90
358 372 1.682740 TATGCATGTGCTGATGTGGG 58.317 50.000 10.16 0.00 42.66 4.61
384 398 0.539438 TGATTGGACAACACAGGGCC 60.539 55.000 0.00 0.00 0.00 5.80
392 406 2.700185 AACACAGGGCCCCACACTT 61.700 57.895 21.43 0.00 0.00 3.16
400 414 1.824852 GGGCCCCACACTTAAATGAAG 59.175 52.381 12.23 0.00 41.37 3.02
402 416 1.204704 GCCCCACACTTAAATGAAGGC 59.795 52.381 0.00 0.00 39.74 4.35
404 418 1.472480 CCCACACTTAAATGAAGGCGG 59.528 52.381 0.00 0.00 39.74 6.13
412 426 6.128007 ACACTTAAATGAAGGCGGAATTAGTG 60.128 38.462 0.00 0.00 39.74 2.74
420 434 2.434702 AGGCGGAATTAGTGAGGGTTAG 59.565 50.000 0.00 0.00 0.00 2.34
428 442 0.253207 AGTGAGGGTTAGGGAAGGGG 60.253 60.000 0.00 0.00 0.00 4.79
429 443 1.084084 TGAGGGTTAGGGAAGGGGG 59.916 63.158 0.00 0.00 0.00 5.40
430 444 1.399057 GAGGGTTAGGGAAGGGGGA 59.601 63.158 0.00 0.00 0.00 4.81
447 470 5.139001 AGGGGGAGTAAGAGATTTACGTAG 58.861 45.833 0.00 0.00 0.00 3.51
476 499 6.952773 TTGTAGGTGTAGCATTTTTGTTCT 57.047 33.333 0.00 0.00 0.00 3.01
480 503 5.519722 AGGTGTAGCATTTTTGTTCTTTCG 58.480 37.500 0.00 0.00 0.00 3.46
485 508 6.801377 TGTAGCATTTTTGTTCTTTCGCTATG 59.199 34.615 0.00 0.00 33.68 2.23
488 511 7.023575 AGCATTTTTGTTCTTTCGCTATGTAG 58.976 34.615 0.00 0.00 0.00 2.74
507 530 6.260870 TGTAGTTGTGTGTTGTTTTGTGAT 57.739 33.333 0.00 0.00 0.00 3.06
509 532 7.817641 TGTAGTTGTGTGTTGTTTTGTGATTA 58.182 30.769 0.00 0.00 0.00 1.75
521 555 5.417580 TGTTTTGTGATTAAGTCATAGGCCC 59.582 40.000 0.00 0.00 39.48 5.80
573 607 4.932268 TTTTCTCGTCGAAAAACACTGT 57.068 36.364 11.14 0.00 45.83 3.55
575 609 4.932268 TTCTCGTCGAAAAACACTGTTT 57.068 36.364 1.00 1.00 0.00 2.83
576 610 4.509915 TCTCGTCGAAAAACACTGTTTC 57.490 40.909 7.62 0.00 0.00 2.78
577 611 3.927758 TCTCGTCGAAAAACACTGTTTCA 59.072 39.130 7.62 0.00 35.17 2.69
584 618 7.409874 CGTCGAAAAACACTGTTTCATTTTTGA 60.410 33.333 7.62 5.40 35.08 2.69
588 622 9.489393 GAAAAACACTGTTTCATTTTTGATTCC 57.511 29.630 7.62 0.00 35.08 3.01
591 625 6.337356 ACACTGTTTCATTTTTGATTCCGTT 58.663 32.000 0.00 0.00 0.00 4.44
593 627 7.010091 ACACTGTTTCATTTTTGATTCCGTTTC 59.990 33.333 0.00 0.00 0.00 2.78
594 628 6.478673 ACTGTTTCATTTTTGATTCCGTTTCC 59.521 34.615 0.00 0.00 0.00 3.13
595 629 5.460419 TGTTTCATTTTTGATTCCGTTTCCG 59.540 36.000 0.00 0.00 0.00 4.30
596 630 3.570559 TCATTTTTGATTCCGTTTCCGC 58.429 40.909 0.00 0.00 0.00 5.54
597 631 2.039327 TTTTTGATTCCGTTTCCGCG 57.961 45.000 0.00 0.00 0.00 6.46
598 632 0.945813 TTTTGATTCCGTTTCCGCGT 59.054 45.000 4.92 0.00 0.00 6.01
599 633 0.945813 TTTGATTCCGTTTCCGCGTT 59.054 45.000 4.92 0.00 0.00 4.84
601 635 1.793258 TGATTCCGTTTCCGCGTTAA 58.207 45.000 4.92 0.00 0.00 2.01
602 636 2.141517 TGATTCCGTTTCCGCGTTAAA 58.858 42.857 4.92 2.14 0.00 1.52
603 637 2.743126 TGATTCCGTTTCCGCGTTAAAT 59.257 40.909 4.92 0.00 0.00 1.40
607 641 3.962423 TCCGTTTCCGCGTTAAATTTTT 58.038 36.364 4.92 0.00 0.00 1.94
641 675 7.594386 CAGTTTGGTTTTGCAAATTTCTGTTTT 59.406 29.630 13.65 0.00 0.00 2.43
677 712 9.852091 ATTTCTTCTACATTTGCATTTTCTCTC 57.148 29.630 0.00 0.00 0.00 3.20
691 726 2.065993 TCTCTCGAAAGTTTCCGCTG 57.934 50.000 10.01 0.00 0.00 5.18
698 733 1.779157 GAAAGTTTCCGCTGCGTTTTC 59.221 47.619 21.59 16.35 0.00 2.29
715 750 4.615961 CGTTTTCGTACCTACTGTTGAGAG 59.384 45.833 0.00 0.00 38.65 3.20
736 771 6.466812 AGAGGGCAAATAATTTTTGTTCCAG 58.533 36.000 17.83 0.00 31.94 3.86
816 851 3.194968 CCTGGATACGTACATCCCCATAC 59.805 52.174 13.60 0.00 43.43 2.39
904 939 7.830739 ACTTTATCTTGTCCAAATCATTCCAC 58.169 34.615 0.00 0.00 0.00 4.02
906 941 2.487762 TCTTGTCCAAATCATTCCACGC 59.512 45.455 0.00 0.00 0.00 5.34
935 970 1.153549 GACATGGACGCCACTCCTC 60.154 63.158 0.00 0.00 35.80 3.71
937 972 2.039624 ATGGACGCCACTCCTCCT 59.960 61.111 0.50 0.00 35.80 3.69
938 973 1.613630 ATGGACGCCACTCCTCCTT 60.614 57.895 0.50 0.00 35.80 3.36
939 974 1.617947 ATGGACGCCACTCCTCCTTC 61.618 60.000 0.50 0.00 35.80 3.46
940 975 1.985116 GGACGCCACTCCTCCTTCT 60.985 63.158 0.00 0.00 0.00 2.85
942 977 0.968393 GACGCCACTCCTCCTTCTCT 60.968 60.000 0.00 0.00 0.00 3.10
943 978 0.968393 ACGCCACTCCTCCTTCTCTC 60.968 60.000 0.00 0.00 0.00 3.20
946 981 1.484038 CCACTCCTCCTTCTCTCCAG 58.516 60.000 0.00 0.00 0.00 3.86
947 982 1.006519 CCACTCCTCCTTCTCTCCAGA 59.993 57.143 0.00 0.00 0.00 3.86
948 983 2.558575 CCACTCCTCCTTCTCTCCAGAA 60.559 54.545 0.00 0.00 37.11 3.02
982 1017 2.668550 AAACTCTCCCGCGCCAAC 60.669 61.111 0.00 0.00 0.00 3.77
999 1038 3.004862 CCAACCTCGTACAAATACCACC 58.995 50.000 0.00 0.00 0.00 4.61
1060 1101 1.073964 CAGATCAACCACGAGCACAG 58.926 55.000 0.00 0.00 0.00 3.66
1064 1105 2.974698 AACCACGAGCACAGCTGC 60.975 61.111 15.27 0.57 39.88 5.25
1661 1714 3.747266 CCGTACTAGGCGAGGAGG 58.253 66.667 9.99 0.00 0.00 4.30
1664 1717 1.165284 CGTACTAGGCGAGGAGGGAC 61.165 65.000 0.00 0.00 0.00 4.46
1665 1718 0.106819 GTACTAGGCGAGGAGGGACA 60.107 60.000 0.00 0.00 0.00 4.02
1666 1719 0.106819 TACTAGGCGAGGAGGGACAC 60.107 60.000 0.00 0.00 0.00 3.67
1667 1720 2.043248 TAGGCGAGGAGGGACACC 60.043 66.667 0.00 0.00 40.21 4.16
1686 1739 2.126189 GTCACCGGACACCTACGC 60.126 66.667 9.46 0.00 43.73 4.42
1752 1808 4.699522 GAGTGACGGCGGGGCTTT 62.700 66.667 13.24 0.00 0.00 3.51
1779 1835 5.679792 GTGAGTTGAATTTGTTTACGTGGAC 59.320 40.000 0.00 0.00 0.00 4.02
1798 1854 0.248866 CCGTGTGGTTTTGTTCCAGC 60.249 55.000 0.00 0.00 35.49 4.85
1849 1911 6.686630 TCGTTAATTTGCTTGTGAAATGGAT 58.313 32.000 0.00 0.00 0.00 3.41
1866 1928 9.373603 TGAAATGGATGAAATAAGCTGATTTTG 57.626 29.630 10.51 0.00 0.00 2.44
1867 1929 9.374838 GAAATGGATGAAATAAGCTGATTTTGT 57.625 29.630 10.51 2.77 0.00 2.83
1868 1930 9.729281 AAATGGATGAAATAAGCTGATTTTGTT 57.271 25.926 10.51 0.00 0.00 2.83
1922 1984 2.199291 AACTCGAAGAAACACGACGT 57.801 45.000 0.00 0.00 34.09 4.34
2001 2066 2.158559 TCTTTACGTGGCGTACTGGTA 58.841 47.619 0.00 0.00 42.13 3.25
2010 2075 0.031585 GCGTACTGGTATGGCGATCA 59.968 55.000 0.00 0.00 0.00 2.92
2011 2076 1.767289 CGTACTGGTATGGCGATCAC 58.233 55.000 0.00 0.00 0.00 3.06
2021 2086 1.448540 GGCGATCACCTGGTCAGTG 60.449 63.158 0.00 0.00 0.00 3.66
2035 2100 3.070878 TGGTCAGTGTACTGCTTGATTCA 59.929 43.478 7.14 0.00 43.46 2.57
2036 2101 4.256920 GGTCAGTGTACTGCTTGATTCAT 58.743 43.478 7.14 0.00 43.46 2.57
2042 2107 7.823799 TCAGTGTACTGCTTGATTCATTATTCA 59.176 33.333 7.14 0.00 43.46 2.57
2067 2132 9.962759 CATTAATTTGCTGAGTGAAAAATAAGC 57.037 29.630 0.00 0.00 0.00 3.09
2068 2133 9.933723 ATTAATTTGCTGAGTGAAAAATAAGCT 57.066 25.926 0.00 0.00 0.00 3.74
2069 2134 7.647907 AATTTGCTGAGTGAAAAATAAGCTG 57.352 32.000 0.00 0.00 0.00 4.24
2070 2135 6.389830 TTTGCTGAGTGAAAAATAAGCTGA 57.610 33.333 0.00 0.00 0.00 4.26
2071 2136 6.579666 TTGCTGAGTGAAAAATAAGCTGAT 57.420 33.333 0.00 0.00 0.00 2.90
2072 2137 6.579666 TGCTGAGTGAAAAATAAGCTGATT 57.420 33.333 0.00 0.00 0.00 2.57
2073 2138 6.985117 TGCTGAGTGAAAAATAAGCTGATTT 58.015 32.000 2.89 2.89 0.00 2.17
2074 2139 7.436118 TGCTGAGTGAAAAATAAGCTGATTTT 58.564 30.769 15.07 15.07 40.03 1.82
2075 2140 7.383029 TGCTGAGTGAAAAATAAGCTGATTTTG 59.617 33.333 20.41 8.81 38.67 2.44
2076 2141 7.596248 GCTGAGTGAAAAATAAGCTGATTTTGA 59.404 33.333 20.41 9.27 38.67 2.69
2077 2142 9.635520 CTGAGTGAAAAATAAGCTGATTTTGAT 57.364 29.630 20.41 7.72 38.67 2.57
2078 2143 9.985730 TGAGTGAAAAATAAGCTGATTTTGATT 57.014 25.926 20.41 7.05 38.67 2.57
2082 2147 9.985730 TGAAAAATAAGCTGATTTTGATTCTGT 57.014 25.926 20.41 5.02 38.67 3.41
2088 2153 7.750229 AAGCTGATTTTGATTCTGTTACTCA 57.250 32.000 0.00 0.00 0.00 3.41
2089 2154 7.138692 AGCTGATTTTGATTCTGTTACTCAC 57.861 36.000 0.00 0.00 0.00 3.51
2090 2155 6.017933 GCTGATTTTGATTCTGTTACTCACG 58.982 40.000 0.00 0.00 0.00 4.35
2091 2156 6.480524 TGATTTTGATTCTGTTACTCACGG 57.519 37.500 0.00 0.00 0.00 4.94
2092 2157 4.742438 TTTTGATTCTGTTACTCACGGC 57.258 40.909 0.00 0.00 0.00 5.68
2093 2158 3.394674 TTGATTCTGTTACTCACGGCA 57.605 42.857 0.00 0.00 0.00 5.69
2094 2159 3.610040 TGATTCTGTTACTCACGGCAT 57.390 42.857 0.00 0.00 0.00 4.40
2095 2160 3.521560 TGATTCTGTTACTCACGGCATC 58.478 45.455 0.00 0.00 35.54 3.91
2134 2199 2.591715 CCCCGCATCCATTCGGAC 60.592 66.667 0.00 0.00 46.79 4.79
2157 2222 1.014352 GCTGTCCGAACACAGTTTGT 58.986 50.000 9.86 0.00 44.98 2.83
2167 2232 1.333619 ACACAGTTTGTCATCCAACGC 59.666 47.619 0.00 0.00 29.79 4.84
2174 2239 2.745884 TCATCCAACGCGGGCTTG 60.746 61.111 12.47 5.95 34.36 4.01
2203 2268 2.575262 CGAGCGGTCCGAACGTAC 60.575 66.667 17.49 1.28 0.00 3.67
2230 2296 1.202521 GGCAAACCCAAGACAAACTGG 60.203 52.381 0.00 0.00 0.00 4.00
2268 2334 2.603110 CCTGACATCCACATAACGAACG 59.397 50.000 0.00 0.00 0.00 3.95
2274 2340 5.445845 ACATCCACATAACGAACGAAAAAC 58.554 37.500 0.14 0.00 0.00 2.43
2277 2343 3.303263 CCACATAACGAACGAAAAACCGT 60.303 43.478 0.14 0.00 45.64 4.83
2291 2357 1.192428 AACCGTCATGTACCCTCTCC 58.808 55.000 0.00 0.00 0.00 3.71
2299 2365 3.051803 TCATGTACCCTCTCCTCTCCATT 60.052 47.826 0.00 0.00 0.00 3.16
2353 2419 3.690460 AGGTTTGGCAGAAGGTGATTAG 58.310 45.455 0.00 0.00 0.00 1.73
2355 2421 3.421844 GTTTGGCAGAAGGTGATTAGGT 58.578 45.455 0.00 0.00 0.00 3.08
2382 2448 4.025015 GCAGATAGCATGTTGGAAGTTG 57.975 45.455 0.00 0.00 44.79 3.16
2384 2450 4.437930 GCAGATAGCATGTTGGAAGTTGAC 60.438 45.833 0.00 0.00 44.79 3.18
2395 2461 1.324736 GGAAGTTGACAAGCGCTATCG 59.675 52.381 12.05 4.88 39.07 2.92
2419 2485 7.674348 TCGGAGAGGTATACAGATTTATGGAAT 59.326 37.037 5.01 0.00 0.00 3.01
2420 2486 8.314751 CGGAGAGGTATACAGATTTATGGAATT 58.685 37.037 5.01 0.00 0.00 2.17
2431 2497 9.880157 ACAGATTTATGGAATTCATTTTTCAGG 57.120 29.630 7.93 0.00 37.30 3.86
2432 2498 9.880157 CAGATTTATGGAATTCATTTTTCAGGT 57.120 29.630 7.93 0.00 37.30 4.00
2437 2515 6.885952 TGGAATTCATTTTTCAGGTTACGA 57.114 33.333 7.93 0.00 0.00 3.43
2450 2528 1.355971 GTTACGATGCGCTTGAAGGA 58.644 50.000 9.73 0.00 0.00 3.36
2463 2541 5.466728 GCGCTTGAAGGATATTAGTGATTCA 59.533 40.000 0.00 0.00 0.00 2.57
2466 2544 9.376075 CGCTTGAAGGATATTAGTGATTCATAT 57.624 33.333 0.00 0.00 0.00 1.78
2479 2557 7.251321 AGTGATTCATATTGGATACTCTCCC 57.749 40.000 0.00 0.00 44.23 4.30
2480 2558 6.214412 AGTGATTCATATTGGATACTCTCCCC 59.786 42.308 0.00 0.00 44.23 4.81
2481 2559 6.013379 GTGATTCATATTGGATACTCTCCCCA 60.013 42.308 0.00 0.00 44.23 4.96
2482 2560 6.737131 TGATTCATATTGGATACTCTCCCCAT 59.263 38.462 0.00 0.00 44.23 4.00
2483 2561 6.627087 TTCATATTGGATACTCTCCCCATC 57.373 41.667 0.00 0.00 44.23 3.51
2484 2562 5.032846 TCATATTGGATACTCTCCCCATCC 58.967 45.833 0.00 0.00 44.23 3.51
2485 2563 2.118403 TTGGATACTCTCCCCATCCC 57.882 55.000 0.00 0.00 44.23 3.85
2486 2564 0.178932 TGGATACTCTCCCCATCCCG 60.179 60.000 0.00 0.00 44.23 5.14
2487 2565 0.114560 GGATACTCTCCCCATCCCGA 59.885 60.000 0.00 0.00 38.19 5.14
2488 2566 1.482553 GGATACTCTCCCCATCCCGAA 60.483 57.143 0.00 0.00 38.19 4.30
2489 2567 2.326428 GATACTCTCCCCATCCCGAAA 58.674 52.381 0.00 0.00 0.00 3.46
2490 2568 2.489528 TACTCTCCCCATCCCGAAAT 57.510 50.000 0.00 0.00 0.00 2.17
2491 2569 2.489528 ACTCTCCCCATCCCGAAATA 57.510 50.000 0.00 0.00 0.00 1.40
2492 2570 2.771688 ACTCTCCCCATCCCGAAATAA 58.228 47.619 0.00 0.00 0.00 1.40
2493 2571 2.706190 ACTCTCCCCATCCCGAAATAAG 59.294 50.000 0.00 0.00 0.00 1.73
2494 2572 2.706190 CTCTCCCCATCCCGAAATAAGT 59.294 50.000 0.00 0.00 0.00 2.24
2495 2573 2.438021 TCTCCCCATCCCGAAATAAGTG 59.562 50.000 0.00 0.00 0.00 3.16
2496 2574 2.172717 CTCCCCATCCCGAAATAAGTGT 59.827 50.000 0.00 0.00 0.00 3.55
2497 2575 2.171870 TCCCCATCCCGAAATAAGTGTC 59.828 50.000 0.00 0.00 0.00 3.67
2498 2576 2.172717 CCCCATCCCGAAATAAGTGTCT 59.827 50.000 0.00 0.00 0.00 3.41
2499 2577 3.467803 CCCATCCCGAAATAAGTGTCTC 58.532 50.000 0.00 0.00 0.00 3.36
2500 2578 3.118408 CCCATCCCGAAATAAGTGTCTCA 60.118 47.826 0.00 0.00 0.00 3.27
2501 2579 4.513442 CCATCCCGAAATAAGTGTCTCAA 58.487 43.478 0.00 0.00 0.00 3.02
2502 2580 4.572389 CCATCCCGAAATAAGTGTCTCAAG 59.428 45.833 0.00 0.00 0.00 3.02
2503 2581 3.596214 TCCCGAAATAAGTGTCTCAAGC 58.404 45.455 0.00 0.00 0.00 4.01
2504 2582 3.260884 TCCCGAAATAAGTGTCTCAAGCT 59.739 43.478 0.00 0.00 0.00 3.74
2505 2583 4.003648 CCCGAAATAAGTGTCTCAAGCTT 58.996 43.478 0.00 0.00 0.00 3.74
2506 2584 5.046878 TCCCGAAATAAGTGTCTCAAGCTTA 60.047 40.000 0.00 0.00 0.00 3.09
2507 2585 5.292101 CCCGAAATAAGTGTCTCAAGCTTAG 59.708 44.000 0.00 0.00 0.00 2.18
2508 2586 5.869888 CCGAAATAAGTGTCTCAAGCTTAGT 59.130 40.000 0.00 0.00 0.00 2.24
2509 2587 7.033791 CCGAAATAAGTGTCTCAAGCTTAGTA 58.966 38.462 0.00 0.00 0.00 1.82
2510 2588 7.707035 CCGAAATAAGTGTCTCAAGCTTAGTAT 59.293 37.037 0.00 0.00 0.00 2.12
2511 2589 9.731819 CGAAATAAGTGTCTCAAGCTTAGTATA 57.268 33.333 0.00 0.00 0.00 1.47
2518 2596 9.726438 AGTGTCTCAAGCTTAGTATAATTTTGT 57.274 29.630 0.00 0.00 0.00 2.83
2541 2619 9.745880 TTGTACTAGAACTAGTTCAAAGTTGAG 57.254 33.333 31.75 20.88 44.62 3.02
2542 2620 9.128404 TGTACTAGAACTAGTTCAAAGTTGAGA 57.872 33.333 31.75 19.78 43.35 3.27
2543 2621 9.396938 GTACTAGAACTAGTTCAAAGTTGAGAC 57.603 37.037 31.75 24.17 43.35 3.36
2544 2622 8.008513 ACTAGAACTAGTTCAAAGTTGAGACA 57.991 34.615 31.80 6.24 43.35 3.41
2545 2623 7.921745 ACTAGAACTAGTTCAAAGTTGAGACAC 59.078 37.037 31.80 5.83 43.35 3.67
2546 2624 6.879400 AGAACTAGTTCAAAGTTGAGACACT 58.121 36.000 31.80 8.16 41.84 3.55
2547 2625 8.008513 AGAACTAGTTCAAAGTTGAGACACTA 57.991 34.615 31.80 4.74 41.84 2.74
2548 2626 8.475639 AGAACTAGTTCAAAGTTGAGACACTAA 58.524 33.333 31.80 0.00 41.84 2.24
2549 2627 9.262358 GAACTAGTTCAAAGTTGAGACACTAAT 57.738 33.333 27.12 0.00 37.31 1.73
2550 2628 9.614792 AACTAGTTCAAAGTTGAGACACTAATT 57.385 29.630 1.12 1.14 38.61 1.40
2551 2629 9.614792 ACTAGTTCAAAGTTGAGACACTAATTT 57.385 29.630 0.00 0.00 38.61 1.82
2554 2632 8.190784 AGTTCAAAGTTGAGACACTAATTTTGG 58.809 33.333 0.00 0.00 38.61 3.28
2555 2633 7.038154 TCAAAGTTGAGACACTAATTTTGGG 57.962 36.000 0.00 0.00 35.50 4.12
2556 2634 6.831353 TCAAAGTTGAGACACTAATTTTGGGA 59.169 34.615 0.00 0.00 35.50 4.37
2557 2635 6.635030 AAGTTGAGACACTAATTTTGGGAC 57.365 37.500 0.00 0.00 0.00 4.46
2558 2636 4.755123 AGTTGAGACACTAATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
2559 2637 3.670625 TGAGACACTAATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2560 2638 3.325425 TGAGACACTAATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
2561 2639 4.019681 TGAGACACTAATTTTGGGACGGAT 60.020 41.667 0.00 0.00 0.00 4.18
2562 2640 4.261801 AGACACTAATTTTGGGACGGATG 58.738 43.478 0.00 0.00 0.00 3.51
2563 2641 3.352648 ACACTAATTTTGGGACGGATGG 58.647 45.455 0.00 0.00 0.00 3.51
2564 2642 3.009695 ACACTAATTTTGGGACGGATGGA 59.990 43.478 0.00 0.00 0.00 3.41
2565 2643 3.627577 CACTAATTTTGGGACGGATGGAG 59.372 47.826 0.00 0.00 0.00 3.86
2596 2674 1.174078 TGTGCTCCATGCCACAAGTG 61.174 55.000 8.90 0.00 42.00 3.16
2621 2699 2.759355 TGTACTTACTCATGGAGGGGG 58.241 52.381 0.00 0.00 33.35 5.40
2625 2703 0.548926 TTACTCATGGAGGGGGTGCA 60.549 55.000 0.00 0.00 33.35 4.57
2689 2767 5.594725 TCACCATGGAAGTAGAGCTTACTAG 59.405 44.000 21.47 0.00 38.85 2.57
2698 2776 9.949174 GGAAGTAGAGCTTACTAGTTTACATAC 57.051 37.037 0.00 0.00 37.59 2.39
2714 2792 9.216117 AGTTTACATACAACTATTGGTGAAGTC 57.784 33.333 0.00 0.00 32.48 3.01
2715 2793 9.216117 GTTTACATACAACTATTGGTGAAGTCT 57.784 33.333 0.00 0.00 34.12 3.24
2716 2794 9.787435 TTTACATACAACTATTGGTGAAGTCTT 57.213 29.630 0.00 0.00 34.12 3.01
2725 2825 4.395959 TTGGTGAAGTCTTGACTTACGT 57.604 40.909 14.99 0.00 0.00 3.57
2726 2826 3.713288 TGGTGAAGTCTTGACTTACGTG 58.287 45.455 14.99 0.00 0.00 4.49
2768 2869 9.522804 GTTGGTTACTTTTATGAATTGTGACAA 57.477 29.630 0.00 0.00 0.00 3.18
2769 2870 9.522804 TTGGTTACTTTTATGAATTGTGACAAC 57.477 29.630 0.00 0.00 0.00 3.32
2836 2937 6.371595 AGTCCTCAAGAAACATGAAGAGAT 57.628 37.500 0.00 0.00 0.00 2.75
2852 2953 5.994054 TGAAGAGATGTTTGAGTCTTTCCTG 59.006 40.000 0.00 0.00 29.28 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.427453 GGTCCATCTCACACGTCTATGT 59.573 50.000 0.00 0.00 0.00 2.29
8 9 2.541794 CGGTCCATCTCACACGTCTATG 60.542 54.545 0.00 0.00 0.00 2.23
9 10 1.676529 CGGTCCATCTCACACGTCTAT 59.323 52.381 0.00 0.00 0.00 1.98
10 11 1.092348 CGGTCCATCTCACACGTCTA 58.908 55.000 0.00 0.00 0.00 2.59
11 12 1.883732 CGGTCCATCTCACACGTCT 59.116 57.895 0.00 0.00 0.00 4.18
12 13 1.805945 GCGGTCCATCTCACACGTC 60.806 63.158 0.00 0.00 0.00 4.34
13 14 2.094757 TTGCGGTCCATCTCACACGT 62.095 55.000 0.00 0.00 0.00 4.49
14 15 1.354337 CTTGCGGTCCATCTCACACG 61.354 60.000 0.00 0.00 0.00 4.49
15 16 0.037326 TCTTGCGGTCCATCTCACAC 60.037 55.000 0.00 0.00 0.00 3.82
16 17 0.684535 TTCTTGCGGTCCATCTCACA 59.315 50.000 0.00 0.00 0.00 3.58
17 18 1.066858 TCTTCTTGCGGTCCATCTCAC 60.067 52.381 0.00 0.00 0.00 3.51
18 19 1.266178 TCTTCTTGCGGTCCATCTCA 58.734 50.000 0.00 0.00 0.00 3.27
19 20 2.386661 TTCTTCTTGCGGTCCATCTC 57.613 50.000 0.00 0.00 0.00 2.75
20 21 2.859165 TTTCTTCTTGCGGTCCATCT 57.141 45.000 0.00 0.00 0.00 2.90
21 22 3.915437 TTTTTCTTCTTGCGGTCCATC 57.085 42.857 0.00 0.00 0.00 3.51
44 45 0.306533 AAACAACTAGCGCCAACACG 59.693 50.000 2.29 0.00 0.00 4.49
45 46 2.116366 CAAAACAACTAGCGCCAACAC 58.884 47.619 2.29 0.00 0.00 3.32
46 47 1.535015 GCAAAACAACTAGCGCCAACA 60.535 47.619 2.29 0.00 0.00 3.33
47 48 1.128513 GCAAAACAACTAGCGCCAAC 58.871 50.000 2.29 0.00 0.00 3.77
48 49 0.031449 GGCAAAACAACTAGCGCCAA 59.969 50.000 2.29 0.00 39.38 4.52
49 50 0.821711 AGGCAAAACAACTAGCGCCA 60.822 50.000 2.29 0.00 42.10 5.69
50 51 1.135774 GTAGGCAAAACAACTAGCGCC 60.136 52.381 2.29 0.00 39.90 6.53
51 52 1.533731 TGTAGGCAAAACAACTAGCGC 59.466 47.619 0.00 0.00 0.00 5.92
52 53 2.546368 TGTGTAGGCAAAACAACTAGCG 59.454 45.455 0.00 0.00 0.00 4.26
53 54 4.766404 ATGTGTAGGCAAAACAACTAGC 57.234 40.909 0.00 0.00 0.00 3.42
54 55 6.422776 CCTATGTGTAGGCAAAACAACTAG 57.577 41.667 0.00 0.00 41.05 2.57
71 72 2.268920 CAGCCCACACGCCTATGT 59.731 61.111 0.00 0.00 0.00 2.29
72 73 2.514592 CCAGCCCACACGCCTATG 60.515 66.667 0.00 0.00 0.00 2.23
73 74 3.009115 ACCAGCCCACACGCCTAT 61.009 61.111 0.00 0.00 0.00 2.57
74 75 3.702048 GACCAGCCCACACGCCTA 61.702 66.667 0.00 0.00 0.00 3.93
76 77 4.643387 AAGACCAGCCCACACGCC 62.643 66.667 0.00 0.00 0.00 5.68
77 78 3.050275 GAAGACCAGCCCACACGC 61.050 66.667 0.00 0.00 0.00 5.34
78 79 0.320374 TAAGAAGACCAGCCCACACG 59.680 55.000 0.00 0.00 0.00 4.49
79 80 1.623811 TCTAAGAAGACCAGCCCACAC 59.376 52.381 0.00 0.00 0.00 3.82
80 81 1.623811 GTCTAAGAAGACCAGCCCACA 59.376 52.381 0.00 0.00 45.50 4.17
81 82 2.388310 GTCTAAGAAGACCAGCCCAC 57.612 55.000 0.00 0.00 45.50 4.61
89 90 9.707692 CACGTTTTGTGTGGTGTCTAAGAAGAC 62.708 44.444 0.00 0.00 46.25 3.01
90 91 4.569162 CGTTTTGTGTGGTGTCTAAGAAGA 59.431 41.667 0.00 0.00 0.00 2.87
91 92 4.331717 ACGTTTTGTGTGGTGTCTAAGAAG 59.668 41.667 0.00 0.00 0.00 2.85
92 93 4.093703 CACGTTTTGTGTGGTGTCTAAGAA 59.906 41.667 0.00 0.00 43.88 2.52
93 94 3.619483 CACGTTTTGTGTGGTGTCTAAGA 59.381 43.478 0.00 0.00 43.88 2.10
94 95 3.935450 CACGTTTTGTGTGGTGTCTAAG 58.065 45.455 0.00 0.00 43.88 2.18
106 107 0.951558 GATCTGCCCACACGTTTTGT 59.048 50.000 0.00 0.00 39.97 2.83
107 108 0.240945 GGATCTGCCCACACGTTTTG 59.759 55.000 0.00 0.00 0.00 2.44
108 109 2.641197 GGATCTGCCCACACGTTTT 58.359 52.632 0.00 0.00 0.00 2.43
109 110 4.397348 GGATCTGCCCACACGTTT 57.603 55.556 0.00 0.00 0.00 3.60
118 119 1.526225 GGGCGTTAAGGGATCTGCC 60.526 63.158 0.00 0.00 41.72 4.85
119 120 1.095807 GTGGGCGTTAAGGGATCTGC 61.096 60.000 0.00 0.00 0.00 4.26
120 121 0.251916 TGTGGGCGTTAAGGGATCTG 59.748 55.000 0.00 0.00 0.00 2.90
121 122 0.252197 GTGTGGGCGTTAAGGGATCT 59.748 55.000 0.00 0.00 0.00 2.75
122 123 1.087771 CGTGTGGGCGTTAAGGGATC 61.088 60.000 0.00 0.00 0.00 3.36
123 124 1.078708 CGTGTGGGCGTTAAGGGAT 60.079 57.895 0.00 0.00 0.00 3.85
124 125 2.344500 CGTGTGGGCGTTAAGGGA 59.656 61.111 0.00 0.00 0.00 4.20
125 126 2.031465 ACGTGTGGGCGTTAAGGG 59.969 61.111 0.00 0.00 43.04 3.95
126 127 1.595929 ACACGTGTGGGCGTTAAGG 60.596 57.895 22.71 0.00 43.83 2.69
127 128 1.567537 CACACGTGTGGGCGTTAAG 59.432 57.895 35.65 11.35 43.83 1.85
128 129 3.720531 CACACGTGTGGGCGTTAA 58.279 55.556 35.65 0.00 43.83 2.01
136 137 0.438445 CGATAACTGCCACACGTGTG 59.562 55.000 36.13 36.13 45.23 3.82
137 138 0.032952 ACGATAACTGCCACACGTGT 59.967 50.000 17.22 17.22 32.93 4.49
138 139 0.713883 GACGATAACTGCCACACGTG 59.286 55.000 15.48 15.48 34.26 4.49
139 140 0.731514 CGACGATAACTGCCACACGT 60.732 55.000 0.00 0.00 36.71 4.49
140 141 0.731514 ACGACGATAACTGCCACACG 60.732 55.000 0.00 0.00 0.00 4.49
141 142 0.989890 GACGACGATAACTGCCACAC 59.010 55.000 0.00 0.00 0.00 3.82
142 143 0.108992 GGACGACGATAACTGCCACA 60.109 55.000 0.00 0.00 0.00 4.17
143 144 0.804933 GGGACGACGATAACTGCCAC 60.805 60.000 0.00 0.00 0.00 5.01
144 145 0.968901 AGGGACGACGATAACTGCCA 60.969 55.000 0.00 0.00 0.00 4.92
145 146 1.027357 TAGGGACGACGATAACTGCC 58.973 55.000 0.00 0.00 0.00 4.85
146 147 2.857592 TTAGGGACGACGATAACTGC 57.142 50.000 0.00 0.00 0.00 4.40
147 148 4.832590 AGATTAGGGACGACGATAACTG 57.167 45.455 0.00 0.00 0.00 3.16
148 149 6.150809 GGATTAGATTAGGGACGACGATAACT 59.849 42.308 0.00 0.00 0.00 2.24
149 150 6.072286 TGGATTAGATTAGGGACGACGATAAC 60.072 42.308 0.00 0.00 0.00 1.89
150 151 6.005823 TGGATTAGATTAGGGACGACGATAA 58.994 40.000 0.00 0.00 0.00 1.75
151 152 5.563592 TGGATTAGATTAGGGACGACGATA 58.436 41.667 0.00 0.00 0.00 2.92
152 153 4.404640 TGGATTAGATTAGGGACGACGAT 58.595 43.478 0.00 0.00 0.00 3.73
153 154 3.824133 TGGATTAGATTAGGGACGACGA 58.176 45.455 0.00 0.00 0.00 4.20
154 155 4.785511 ATGGATTAGATTAGGGACGACG 57.214 45.455 0.00 0.00 0.00 5.12
155 156 5.855045 ACAATGGATTAGATTAGGGACGAC 58.145 41.667 0.00 0.00 0.00 4.34
156 157 6.494666 AACAATGGATTAGATTAGGGACGA 57.505 37.500 0.00 0.00 0.00 4.20
157 158 7.713507 TGTTAACAATGGATTAGATTAGGGACG 59.286 37.037 5.64 0.00 0.00 4.79
158 159 8.974060 TGTTAACAATGGATTAGATTAGGGAC 57.026 34.615 5.64 0.00 0.00 4.46
159 160 9.573166 CATGTTAACAATGGATTAGATTAGGGA 57.427 33.333 13.23 0.00 0.00 4.20
160 161 8.796475 CCATGTTAACAATGGATTAGATTAGGG 58.204 37.037 22.48 1.46 37.66 3.53
161 162 8.299570 GCCATGTTAACAATGGATTAGATTAGG 58.700 37.037 27.36 9.66 37.66 2.69
167 168 6.206395 TGTGCCATGTTAACAATGGATTAG 57.794 37.500 27.36 11.22 37.66 1.73
201 202 1.944430 GCGCCAAGTTGCTAACCTAGT 60.944 52.381 0.00 0.00 0.00 2.57
217 218 2.114825 GTACTACTACGATGTTGCGCC 58.885 52.381 4.18 0.00 33.86 6.53
224 225 5.814764 AACTGTCCAGTACTACTACGATG 57.185 43.478 0.00 0.00 41.58 3.84
247 248 8.031864 GCATGCACTCAACTATACTCTATACAT 58.968 37.037 14.21 0.00 0.00 2.29
258 259 1.739466 CCAACGCATGCACTCAACTAT 59.261 47.619 19.57 0.00 0.00 2.12
264 265 0.387239 GAAACCCAACGCATGCACTC 60.387 55.000 19.57 0.00 0.00 3.51
267 268 1.539157 TATGAAACCCAACGCATGCA 58.461 45.000 19.57 0.00 0.00 3.96
301 314 6.462073 TTTACTTAAGTGTAGCAAAGCTCG 57.538 37.500 18.56 0.00 40.44 5.03
319 332 6.373216 TGCATAACTTCGCAGGTAATTTTACT 59.627 34.615 0.87 0.00 33.34 2.24
332 345 1.398041 TCAGCACATGCATAACTTCGC 59.602 47.619 6.64 0.00 45.16 4.70
333 346 3.064408 ACATCAGCACATGCATAACTTCG 59.936 43.478 6.64 0.00 45.16 3.79
335 348 3.129813 CCACATCAGCACATGCATAACTT 59.870 43.478 6.64 0.00 45.16 2.66
338 351 2.025898 CCCACATCAGCACATGCATAA 58.974 47.619 6.64 0.00 45.16 1.90
340 353 1.040893 CCCCACATCAGCACATGCAT 61.041 55.000 6.64 0.00 45.16 3.96
341 354 1.679641 CCCCACATCAGCACATGCA 60.680 57.895 6.64 0.00 45.16 3.96
342 355 1.252904 AACCCCACATCAGCACATGC 61.253 55.000 0.00 0.00 42.49 4.06
343 356 0.528924 CAACCCCACATCAGCACATG 59.471 55.000 0.00 0.00 0.00 3.21
344 357 0.112995 ACAACCCCACATCAGCACAT 59.887 50.000 0.00 0.00 0.00 3.21
345 358 0.106268 AACAACCCCACATCAGCACA 60.106 50.000 0.00 0.00 0.00 4.57
346 359 1.039856 AAACAACCCCACATCAGCAC 58.960 50.000 0.00 0.00 0.00 4.40
347 360 1.039068 CAAACAACCCCACATCAGCA 58.961 50.000 0.00 0.00 0.00 4.41
348 361 1.327303 TCAAACAACCCCACATCAGC 58.673 50.000 0.00 0.00 0.00 4.26
349 362 3.306225 CCAATCAAACAACCCCACATCAG 60.306 47.826 0.00 0.00 0.00 2.90
353 367 2.035632 GTCCAATCAAACAACCCCACA 58.964 47.619 0.00 0.00 0.00 4.17
376 390 0.178975 TTTAAGTGTGGGGCCCTGTG 60.179 55.000 25.93 0.00 0.00 3.66
380 394 1.824852 CTTCATTTAAGTGTGGGGCCC 59.175 52.381 18.17 18.17 0.00 5.80
384 398 1.472480 CCGCCTTCATTTAAGTGTGGG 59.528 52.381 11.98 9.70 34.73 4.61
392 406 5.123227 CCTCACTAATTCCGCCTTCATTTA 58.877 41.667 0.00 0.00 0.00 1.40
400 414 2.484947 CCTAACCCTCACTAATTCCGCC 60.485 54.545 0.00 0.00 0.00 6.13
402 416 3.036091 TCCCTAACCCTCACTAATTCCG 58.964 50.000 0.00 0.00 0.00 4.30
404 418 4.141459 CCCTTCCCTAACCCTCACTAATTC 60.141 50.000 0.00 0.00 0.00 2.17
412 426 0.694783 CTCCCCCTTCCCTAACCCTC 60.695 65.000 0.00 0.00 0.00 4.30
420 434 2.498473 ATCTCTTACTCCCCCTTCCC 57.502 55.000 0.00 0.00 0.00 3.97
428 442 7.800155 ACCTACTACGTAAATCTCTTACTCC 57.200 40.000 0.00 0.00 0.00 3.85
429 443 9.500864 CAAACCTACTACGTAAATCTCTTACTC 57.499 37.037 0.00 0.00 0.00 2.59
430 444 9.018582 ACAAACCTACTACGTAAATCTCTTACT 57.981 33.333 0.00 0.00 0.00 2.24
447 470 6.812879 AAAATGCTACACCTACAAACCTAC 57.187 37.500 0.00 0.00 0.00 3.18
476 499 4.812091 ACAACACACAACTACATAGCGAAA 59.188 37.500 0.00 0.00 0.00 3.46
480 503 6.196353 CACAAAACAACACACAACTACATAGC 59.804 38.462 0.00 0.00 0.00 2.97
485 508 8.676454 TTAATCACAAAACAACACACAACTAC 57.324 30.769 0.00 0.00 0.00 2.73
488 511 7.327275 TGACTTAATCACAAAACAACACACAAC 59.673 33.333 0.00 0.00 29.99 3.32
509 532 9.432982 TTTGATTTTATTATGGGCCTATGACTT 57.567 29.630 12.67 0.00 0.00 3.01
534 568 9.927668 ACGAGAAAAACATGAATATGGAAATTT 57.072 25.926 0.00 0.00 38.66 1.82
537 571 7.118535 TCGACGAGAAAAACATGAATATGGAAA 59.881 33.333 0.00 0.00 38.66 3.13
607 641 6.377327 TTGCAAAACCAAACTGAAACAAAA 57.623 29.167 0.00 0.00 0.00 2.44
608 642 6.377327 TTTGCAAAACCAAACTGAAACAAA 57.623 29.167 10.02 0.00 30.28 2.83
609 643 6.566197 ATTTGCAAAACCAAACTGAAACAA 57.434 29.167 17.19 0.00 37.51 2.83
610 644 6.566197 AATTTGCAAAACCAAACTGAAACA 57.434 29.167 17.19 0.00 37.51 2.83
611 645 7.271008 CAGAAATTTGCAAAACCAAACTGAAAC 59.729 33.333 17.19 0.00 37.51 2.78
612 646 7.040823 ACAGAAATTTGCAAAACCAAACTGAAA 60.041 29.630 17.19 0.00 37.51 2.69
613 647 6.429385 ACAGAAATTTGCAAAACCAAACTGAA 59.571 30.769 17.19 0.00 37.51 3.02
614 648 5.936956 ACAGAAATTTGCAAAACCAAACTGA 59.063 32.000 17.19 0.00 37.51 3.41
615 649 6.180771 ACAGAAATTTGCAAAACCAAACTG 57.819 33.333 17.19 18.96 37.51 3.16
616 650 6.816134 AACAGAAATTTGCAAAACCAAACT 57.184 29.167 17.19 7.30 37.51 2.66
655 689 7.065216 TCGAGAGAAAATGCAAATGTAGAAG 57.935 36.000 0.00 0.00 37.03 2.85
672 707 1.935300 GCAGCGGAAACTTTCGAGAGA 60.935 52.381 10.37 0.00 39.20 3.10
676 711 1.155424 AACGCAGCGGAAACTTTCGA 61.155 50.000 21.15 0.00 0.00 3.71
677 712 0.316689 AAACGCAGCGGAAACTTTCG 60.317 50.000 21.15 0.00 0.00 3.46
691 726 3.052036 TCAACAGTAGGTACGAAAACGC 58.948 45.455 0.00 0.00 0.00 4.84
698 733 1.134560 GCCCTCTCAACAGTAGGTACG 59.865 57.143 0.00 0.00 0.00 3.67
699 734 2.176889 TGCCCTCTCAACAGTAGGTAC 58.823 52.381 0.00 0.00 0.00 3.34
715 750 5.003160 AGCTGGAACAAAAATTATTTGCCC 58.997 37.500 10.89 11.87 38.70 5.36
816 851 1.154225 GGCGCGAAGTTGGACATTG 60.154 57.895 12.10 0.00 0.00 2.82
898 933 1.829533 GGATGGCATGGCGTGGAAT 60.830 57.895 20.08 3.42 0.00 3.01
904 939 2.592574 ATGTCGGATGGCATGGCG 60.593 61.111 15.27 0.00 0.00 5.69
935 970 2.873649 GCAGGTGTTTCTGGAGAGAAGG 60.874 54.545 0.00 0.00 39.44 3.46
937 972 1.072331 GGCAGGTGTTTCTGGAGAGAA 59.928 52.381 0.00 0.00 36.36 2.87
938 973 0.687354 GGCAGGTGTTTCTGGAGAGA 59.313 55.000 0.00 0.00 35.43 3.10
939 974 0.322008 GGGCAGGTGTTTCTGGAGAG 60.322 60.000 0.00 0.00 35.43 3.20
940 975 1.059584 TGGGCAGGTGTTTCTGGAGA 61.060 55.000 0.00 0.00 35.43 3.71
942 977 1.455849 CTGGGCAGGTGTTTCTGGA 59.544 57.895 0.00 0.00 35.43 3.86
943 978 2.270986 GCTGGGCAGGTGTTTCTGG 61.271 63.158 0.00 0.00 35.43 3.86
946 981 0.895100 TCATGCTGGGCAGGTGTTTC 60.895 55.000 4.20 0.00 43.65 2.78
947 982 0.469705 TTCATGCTGGGCAGGTGTTT 60.470 50.000 4.20 0.00 43.65 2.83
948 983 0.469705 TTTCATGCTGGGCAGGTGTT 60.470 50.000 4.20 0.00 43.65 3.32
982 1017 1.930567 CGGGTGGTATTTGTACGAGG 58.069 55.000 0.00 0.00 0.00 4.63
987 1022 0.325272 TGCTGCGGGTGGTATTTGTA 59.675 50.000 0.00 0.00 0.00 2.41
989 1024 0.600557 TTTGCTGCGGGTGGTATTTG 59.399 50.000 0.00 0.00 0.00 2.32
999 1038 3.039202 GACGGATGGTTTGCTGCGG 62.039 63.158 0.00 0.00 0.00 5.69
1044 1083 0.952497 CAGCTGTGCTCGTGGTTGAT 60.952 55.000 5.25 0.00 36.40 2.57
1060 1101 0.723981 CGAGCTTTTGGTAGAGCAGC 59.276 55.000 0.00 0.00 41.31 5.25
1064 1105 3.422417 TCGATCGAGCTTTTGGTAGAG 57.578 47.619 15.15 0.00 35.23 2.43
1376 1429 2.809601 CCGCGGAACAGGTTCTCG 60.810 66.667 24.07 13.26 39.45 4.04
1670 1723 3.740397 CGCGTAGGTGTCCGGTGA 61.740 66.667 0.00 0.00 0.00 4.02
1681 1734 1.804326 CACCGTTTCCCTCGCGTAG 60.804 63.158 5.77 1.91 0.00 3.51
1683 1736 4.675029 CCACCGTTTCCCTCGCGT 62.675 66.667 5.77 0.00 0.00 6.01
1686 1739 3.047877 GTGCCACCGTTTCCCTCG 61.048 66.667 0.00 0.00 0.00 4.63
1715 1769 1.226101 GATCACGCACGCACAATGG 60.226 57.895 0.00 0.00 0.00 3.16
1716 1770 1.578367 CGATCACGCACGCACAATG 60.578 57.895 0.00 0.00 0.00 2.82
1717 1771 2.739704 CCGATCACGCACGCACAAT 61.740 57.895 0.00 0.00 38.29 2.71
1718 1772 3.410516 CCGATCACGCACGCACAA 61.411 61.111 0.00 0.00 38.29 3.33
1728 1784 2.579787 CGCCGTCACTCCGATCAC 60.580 66.667 0.00 0.00 0.00 3.06
1752 1808 6.024664 CACGTAAACAAATTCAACTCACACA 58.975 36.000 0.00 0.00 0.00 3.72
1779 1835 0.248866 GCTGGAACAAAACCACACGG 60.249 55.000 0.00 0.00 38.70 4.94
1783 1839 2.793278 AATCGCTGGAACAAAACCAC 57.207 45.000 0.00 0.00 38.70 4.16
1790 1846 2.710377 AGCATACAAATCGCTGGAACA 58.290 42.857 0.00 0.00 33.91 3.18
1798 1854 5.323900 ACGAATCAAACAGCATACAAATCG 58.676 37.500 0.00 0.00 0.00 3.34
1874 1936 7.955864 GCGGCAGCAAAAGTATAATATTACTAC 59.044 37.037 3.18 2.86 44.35 2.73
1880 1942 5.068460 TTTGGCGGCAGCAAAAGTATAATAT 59.932 36.000 12.87 0.00 41.08 1.28
1884 1946 2.094957 GTTTGGCGGCAGCAAAAGTATA 60.095 45.455 11.94 0.00 46.06 1.47
1885 1947 0.965439 TTTGGCGGCAGCAAAAGTAT 59.035 45.000 12.87 0.00 41.08 2.12
2001 2066 1.267574 ACTGACCAGGTGATCGCCAT 61.268 55.000 26.71 11.97 0.00 4.40
2010 2075 1.070758 CAAGCAGTACACTGACCAGGT 59.929 52.381 13.50 0.00 46.59 4.00
2011 2076 1.344438 TCAAGCAGTACACTGACCAGG 59.656 52.381 13.50 0.00 46.59 4.45
2042 2107 9.933723 AGCTTATTTTTCACTCAGCAAATTAAT 57.066 25.926 0.00 0.00 0.00 1.40
2051 2116 9.635520 ATCAAAATCAGCTTATTTTTCACTCAG 57.364 29.630 14.51 4.11 37.03 3.35
2052 2117 9.985730 AATCAAAATCAGCTTATTTTTCACTCA 57.014 25.926 14.51 0.00 37.03 3.41
2056 2121 9.985730 ACAGAATCAAAATCAGCTTATTTTTCA 57.014 25.926 14.51 6.46 37.03 2.69
2062 2127 9.453572 TGAGTAACAGAATCAAAATCAGCTTAT 57.546 29.630 0.00 0.00 0.00 1.73
2063 2128 8.721478 GTGAGTAACAGAATCAAAATCAGCTTA 58.279 33.333 0.00 0.00 0.00 3.09
2064 2129 7.571983 CGTGAGTAACAGAATCAAAATCAGCTT 60.572 37.037 0.00 0.00 0.00 3.74
2065 2130 6.128445 CGTGAGTAACAGAATCAAAATCAGCT 60.128 38.462 0.00 0.00 0.00 4.24
2066 2131 6.017933 CGTGAGTAACAGAATCAAAATCAGC 58.982 40.000 0.00 0.00 0.00 4.26
2067 2132 6.537566 CCGTGAGTAACAGAATCAAAATCAG 58.462 40.000 0.00 0.00 0.00 2.90
2068 2133 5.106712 GCCGTGAGTAACAGAATCAAAATCA 60.107 40.000 0.00 0.00 0.00 2.57
2069 2134 5.106712 TGCCGTGAGTAACAGAATCAAAATC 60.107 40.000 0.00 0.00 0.00 2.17
2070 2135 4.759693 TGCCGTGAGTAACAGAATCAAAAT 59.240 37.500 0.00 0.00 0.00 1.82
2071 2136 4.130857 TGCCGTGAGTAACAGAATCAAAA 58.869 39.130 0.00 0.00 0.00 2.44
2072 2137 3.734463 TGCCGTGAGTAACAGAATCAAA 58.266 40.909 0.00 0.00 0.00 2.69
2073 2138 3.394674 TGCCGTGAGTAACAGAATCAA 57.605 42.857 0.00 0.00 0.00 2.57
2074 2139 3.195610 AGATGCCGTGAGTAACAGAATCA 59.804 43.478 0.00 0.00 0.00 2.57
2075 2140 3.786635 AGATGCCGTGAGTAACAGAATC 58.213 45.455 0.00 0.00 0.00 2.52
2076 2141 3.430929 GGAGATGCCGTGAGTAACAGAAT 60.431 47.826 0.00 0.00 0.00 2.40
2077 2142 2.094182 GGAGATGCCGTGAGTAACAGAA 60.094 50.000 0.00 0.00 0.00 3.02
2078 2143 1.476891 GGAGATGCCGTGAGTAACAGA 59.523 52.381 0.00 0.00 0.00 3.41
2079 2144 1.927895 GGAGATGCCGTGAGTAACAG 58.072 55.000 0.00 0.00 0.00 3.16
2099 2164 2.046217 GGTTTGAGGGTCCGCCTC 60.046 66.667 0.00 0.00 34.45 4.70
2134 2199 2.279851 TGTGTTCGGACAGCACGG 60.280 61.111 0.00 0.00 36.20 4.94
2144 2209 3.617669 GTTGGATGACAAACTGTGTTCG 58.382 45.455 0.00 0.00 41.96 3.95
2157 2222 2.173758 TACAAGCCCGCGTTGGATGA 62.174 55.000 4.92 0.00 42.00 2.92
2167 2232 2.279252 CGGACCGATACAAGCCCG 60.279 66.667 8.64 0.00 0.00 6.13
2174 2239 2.052414 CGCTCGACGGACCGATAC 60.052 66.667 23.38 10.41 37.96 2.24
2209 2274 1.480137 CAGTTTGTCTTGGGTTTGCCA 59.520 47.619 0.00 0.00 36.17 4.92
2216 2281 4.519610 CCCCCAGTTTGTCTTGGG 57.480 61.111 2.51 2.51 45.66 4.12
2230 2296 3.062466 GACTTCCGCAAAGCCCCC 61.062 66.667 0.00 0.00 38.67 5.40
2242 2308 3.865745 CGTTATGTGGATGTCAGGACTTC 59.134 47.826 6.74 6.74 35.48 3.01
2268 2334 3.671716 AGAGGGTACATGACGGTTTTTC 58.328 45.455 0.00 0.00 0.00 2.29
2274 2340 1.033574 GAGGAGAGGGTACATGACGG 58.966 60.000 0.00 0.00 0.00 4.79
2277 2343 1.930204 TGGAGAGGAGAGGGTACATGA 59.070 52.381 0.00 0.00 0.00 3.07
2353 2419 2.094675 ACATGCTATCTGCCAAACACC 58.905 47.619 0.00 0.00 42.00 4.16
2355 2421 2.492881 CCAACATGCTATCTGCCAAACA 59.507 45.455 0.00 0.00 42.00 2.83
2375 2441 1.324736 CGATAGCGCTTGTCAACTTCC 59.675 52.381 18.68 0.00 0.00 3.46
2382 2448 0.318275 CCTCTCCGATAGCGCTTGTC 60.318 60.000 18.68 13.99 35.83 3.18
2384 2450 0.952280 TACCTCTCCGATAGCGCTTG 59.048 55.000 18.68 6.06 35.83 4.01
2395 2461 9.660180 GAATTCCATAAATCTGTATACCTCTCC 57.340 37.037 0.00 0.00 0.00 3.71
2419 2485 4.717991 CGCATCGTAACCTGAAAAATGAA 58.282 39.130 0.00 0.00 0.00 2.57
2420 2486 3.425625 GCGCATCGTAACCTGAAAAATGA 60.426 43.478 0.30 0.00 0.00 2.57
2422 2488 2.747446 AGCGCATCGTAACCTGAAAAAT 59.253 40.909 11.47 0.00 0.00 1.82
2427 2493 0.245266 TCAAGCGCATCGTAACCTGA 59.755 50.000 11.47 0.00 0.00 3.86
2428 2494 1.061131 CTTCAAGCGCATCGTAACCTG 59.939 52.381 11.47 0.00 0.00 4.00
2430 2496 0.373716 CCTTCAAGCGCATCGTAACC 59.626 55.000 11.47 0.00 0.00 2.85
2431 2497 1.355971 TCCTTCAAGCGCATCGTAAC 58.644 50.000 11.47 0.00 0.00 2.50
2432 2498 2.309528 ATCCTTCAAGCGCATCGTAA 57.690 45.000 11.47 0.00 0.00 3.18
2437 2515 4.960938 TCACTAATATCCTTCAAGCGCAT 58.039 39.130 11.47 0.00 0.00 4.73
2471 2549 2.489528 ATTTCGGGATGGGGAGAGTA 57.510 50.000 0.00 0.00 0.00 2.59
2472 2550 2.489528 TATTTCGGGATGGGGAGAGT 57.510 50.000 0.00 0.00 0.00 3.24
2473 2551 2.706190 ACTTATTTCGGGATGGGGAGAG 59.294 50.000 0.00 0.00 0.00 3.20
2474 2552 2.438021 CACTTATTTCGGGATGGGGAGA 59.562 50.000 0.00 0.00 0.00 3.71
2475 2553 2.172717 ACACTTATTTCGGGATGGGGAG 59.827 50.000 0.00 0.00 0.00 4.30
2476 2554 2.171870 GACACTTATTTCGGGATGGGGA 59.828 50.000 0.00 0.00 0.00 4.81
2477 2555 2.172717 AGACACTTATTTCGGGATGGGG 59.827 50.000 0.00 0.00 0.00 4.96
2478 2556 3.118408 TGAGACACTTATTTCGGGATGGG 60.118 47.826 0.00 0.00 0.00 4.00
2479 2557 4.137116 TGAGACACTTATTTCGGGATGG 57.863 45.455 0.00 0.00 0.00 3.51
2480 2558 4.034510 GCTTGAGACACTTATTTCGGGATG 59.965 45.833 0.00 0.00 0.00 3.51
2481 2559 4.080863 AGCTTGAGACACTTATTTCGGGAT 60.081 41.667 0.00 0.00 0.00 3.85
2482 2560 3.260884 AGCTTGAGACACTTATTTCGGGA 59.739 43.478 0.00 0.00 0.00 5.14
2483 2561 3.600388 AGCTTGAGACACTTATTTCGGG 58.400 45.455 0.00 0.00 0.00 5.14
2484 2562 5.869888 ACTAAGCTTGAGACACTTATTTCGG 59.130 40.000 9.86 0.00 0.00 4.30
2485 2563 6.952935 ACTAAGCTTGAGACACTTATTTCG 57.047 37.500 9.86 0.00 0.00 3.46
2492 2570 9.726438 ACAAAATTATACTAAGCTTGAGACACT 57.274 29.630 9.86 0.00 0.00 3.55
2515 2593 9.745880 CTCAACTTTGAACTAGTTCTAGTACAA 57.254 33.333 30.47 16.62 40.14 2.41
2516 2594 9.128404 TCTCAACTTTGAACTAGTTCTAGTACA 57.872 33.333 30.47 20.83 40.14 2.90
2517 2595 9.396938 GTCTCAACTTTGAACTAGTTCTAGTAC 57.603 37.037 30.47 22.38 40.14 2.73
2518 2596 9.128404 TGTCTCAACTTTGAACTAGTTCTAGTA 57.872 33.333 30.47 19.03 40.14 1.82
2519 2597 7.921745 GTGTCTCAACTTTGAACTAGTTCTAGT 59.078 37.037 30.47 27.60 40.14 2.57
2520 2598 8.138712 AGTGTCTCAACTTTGAACTAGTTCTAG 58.861 37.037 30.47 27.08 40.14 2.43
2521 2599 8.008513 AGTGTCTCAACTTTGAACTAGTTCTA 57.991 34.615 30.47 23.04 40.14 2.10
2522 2600 6.879400 AGTGTCTCAACTTTGAACTAGTTCT 58.121 36.000 30.47 12.38 40.14 3.01
2523 2601 8.644318 TTAGTGTCTCAACTTTGAACTAGTTC 57.356 34.615 25.73 25.73 36.64 3.01
2524 2602 9.614792 AATTAGTGTCTCAACTTTGAACTAGTT 57.385 29.630 8.13 8.13 36.64 2.24
2525 2603 9.614792 AAATTAGTGTCTCAACTTTGAACTAGT 57.385 29.630 0.00 0.00 36.64 2.57
2528 2606 8.190784 CCAAAATTAGTGTCTCAACTTTGAACT 58.809 33.333 0.00 0.00 36.64 3.01
2529 2607 7.435192 CCCAAAATTAGTGTCTCAACTTTGAAC 59.565 37.037 0.00 0.00 36.64 3.18
2530 2608 7.340743 TCCCAAAATTAGTGTCTCAACTTTGAA 59.659 33.333 0.00 0.00 36.64 2.69
2531 2609 6.831353 TCCCAAAATTAGTGTCTCAACTTTGA 59.169 34.615 0.00 0.00 35.57 2.69
2532 2610 6.918022 GTCCCAAAATTAGTGTCTCAACTTTG 59.082 38.462 0.00 0.00 0.00 2.77
2533 2611 6.238648 CGTCCCAAAATTAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 0.00 2.66
2534 2612 5.238650 CGTCCCAAAATTAGTGTCTCAACTT 59.761 40.000 0.00 0.00 0.00 2.66
2535 2613 4.755123 CGTCCCAAAATTAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2536 2614 4.083484 CCGTCCCAAAATTAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2537 2615 4.069304 CCGTCCCAAAATTAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2538 2616 3.325425 TCCGTCCCAAAATTAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
2539 2617 3.934068 TCCGTCCCAAAATTAGTGTCTC 58.066 45.455 0.00 0.00 0.00 3.36
2540 2618 4.261801 CATCCGTCCCAAAATTAGTGTCT 58.738 43.478 0.00 0.00 0.00 3.41
2541 2619 3.377172 CCATCCGTCCCAAAATTAGTGTC 59.623 47.826 0.00 0.00 0.00 3.67
2542 2620 3.009695 TCCATCCGTCCCAAAATTAGTGT 59.990 43.478 0.00 0.00 0.00 3.55
2543 2621 3.616219 TCCATCCGTCCCAAAATTAGTG 58.384 45.455 0.00 0.00 0.00 2.74
2544 2622 3.265995 ACTCCATCCGTCCCAAAATTAGT 59.734 43.478 0.00 0.00 0.00 2.24
2545 2623 3.886123 ACTCCATCCGTCCCAAAATTAG 58.114 45.455 0.00 0.00 0.00 1.73
2546 2624 5.640158 ATACTCCATCCGTCCCAAAATTA 57.360 39.130 0.00 0.00 0.00 1.40
2547 2625 2.899303 ACTCCATCCGTCCCAAAATT 57.101 45.000 0.00 0.00 0.00 1.82
2548 2626 5.640158 TTATACTCCATCCGTCCCAAAAT 57.360 39.130 0.00 0.00 0.00 1.82
2549 2627 5.104277 ACATTATACTCCATCCGTCCCAAAA 60.104 40.000 0.00 0.00 0.00 2.44
2550 2628 4.410883 ACATTATACTCCATCCGTCCCAAA 59.589 41.667 0.00 0.00 0.00 3.28
2551 2629 3.971305 ACATTATACTCCATCCGTCCCAA 59.029 43.478 0.00 0.00 0.00 4.12
2552 2630 3.583228 ACATTATACTCCATCCGTCCCA 58.417 45.455 0.00 0.00 0.00 4.37
2553 2631 4.315803 CAACATTATACTCCATCCGTCCC 58.684 47.826 0.00 0.00 0.00 4.46
2554 2632 4.202326 ACCAACATTATACTCCATCCGTCC 60.202 45.833 0.00 0.00 0.00 4.79
2555 2633 4.750098 CACCAACATTATACTCCATCCGTC 59.250 45.833 0.00 0.00 0.00 4.79
2556 2634 4.163458 ACACCAACATTATACTCCATCCGT 59.837 41.667 0.00 0.00 0.00 4.69
2557 2635 4.511454 CACACCAACATTATACTCCATCCG 59.489 45.833 0.00 0.00 0.00 4.18
2558 2636 4.275936 GCACACCAACATTATACTCCATCC 59.724 45.833 0.00 0.00 0.00 3.51
2559 2637 5.126067 AGCACACCAACATTATACTCCATC 58.874 41.667 0.00 0.00 0.00 3.51
2560 2638 5.116084 AGCACACCAACATTATACTCCAT 57.884 39.130 0.00 0.00 0.00 3.41
2561 2639 4.513442 GAGCACACCAACATTATACTCCA 58.487 43.478 0.00 0.00 0.00 3.86
2562 2640 3.877508 GGAGCACACCAACATTATACTCC 59.122 47.826 0.00 0.00 34.89 3.85
2563 2641 4.513442 TGGAGCACACCAACATTATACTC 58.487 43.478 0.00 0.00 36.96 2.59
2564 2642 4.568072 TGGAGCACACCAACATTATACT 57.432 40.909 0.00 0.00 36.96 2.12
2565 2643 4.498009 GCATGGAGCACACCAACATTATAC 60.498 45.833 0.00 0.00 43.47 1.47
2596 2674 4.283722 CCCTCCATGAGTAAGTACATACCC 59.716 50.000 4.68 0.00 0.00 3.69
2601 2679 2.045326 ACCCCCTCCATGAGTAAGTACA 59.955 50.000 0.00 0.00 0.00 2.90
2621 2699 2.543012 CAGAATCTCCATGACGATGCAC 59.457 50.000 0.00 0.00 0.00 4.57
2625 2703 8.085296 GTCTATTTACAGAATCTCCATGACGAT 58.915 37.037 0.00 0.00 0.00 3.73
2658 2736 1.056660 ACTTCCATGGTGACCTCGTT 58.943 50.000 12.58 0.00 0.00 3.85
2670 2748 8.591114 TGTAAACTAGTAAGCTCTACTTCCAT 57.409 34.615 11.97 3.38 39.97 3.41
2689 2767 9.216117 AGACTTCACCAATAGTTGTATGTAAAC 57.784 33.333 0.00 0.00 0.00 2.01
2742 2843 9.522804 TTGTCACAATTCATAAAAGTAACCAAC 57.477 29.630 0.00 0.00 0.00 3.77
2768 2869 8.946085 TCTTTACTTTGATGATAATCGCTTTGT 58.054 29.630 0.00 0.00 0.00 2.83
2769 2870 9.773328 TTCTTTACTTTGATGATAATCGCTTTG 57.227 29.630 0.00 0.00 0.00 2.77
2802 2903 8.561738 TGTTTCTTGAGGACTTTACATTATCC 57.438 34.615 0.00 0.00 0.00 2.59
2824 2925 7.040823 GGAAAGACTCAAACATCTCTTCATGTT 60.041 37.037 0.00 0.00 46.85 2.71
2836 2937 6.828273 TCTCAATTTCAGGAAAGACTCAAACA 59.172 34.615 0.66 0.00 33.32 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.