Multiple sequence alignment - TraesCS6D01G326400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G326400 chr6D 100.000 6000 0 0 1 6000 431459082 431465081 0.000000e+00 11081
1 TraesCS6D01G326400 chr6D 92.233 103 5 3 5886 5987 470393378 470393278 6.270000e-30 143
2 TraesCS6D01G326400 chrUn 92.836 3322 158 41 894 4183 74549100 74552373 0.000000e+00 4743
3 TraesCS6D01G326400 chrUn 92.565 807 55 4 4233 5037 74552368 74553171 0.000000e+00 1153
4 TraesCS6D01G326400 chrUn 92.439 820 27 4 1 789 74548159 74548974 0.000000e+00 1138
5 TraesCS6D01G326400 chrUn 92.035 226 15 3 5776 6000 27270658 27270881 1.260000e-81 315
6 TraesCS6D01G326400 chrUn 90.299 134 2 6 822 951 74548974 74549100 1.340000e-36 165
7 TraesCS6D01G326400 chr6B 94.716 2044 88 9 3020 5049 651417420 651419457 0.000000e+00 3158
8 TraesCS6D01G326400 chr6B 95.245 1367 55 9 1585 2946 651416053 651417414 0.000000e+00 2156
9 TraesCS6D01G326400 chr6B 88.466 867 50 20 77 926 651414619 651415452 0.000000e+00 1002
10 TraesCS6D01G326400 chr6B 87.934 605 41 21 894 1484 651415463 651416049 0.000000e+00 684
11 TraesCS6D01G326400 chr6B 94.366 71 4 0 1 71 651414466 651414536 6.360000e-20 110
12 TraesCS6D01G326400 chr3B 87.365 649 43 8 5376 6000 127326842 127326209 0.000000e+00 708
13 TraesCS6D01G326400 chr3B 88.341 223 24 2 5529 5750 788154756 788154977 3.570000e-67 267
14 TraesCS6D01G326400 chr3B 89.744 78 8 0 5526 5603 655644395 655644472 3.830000e-17 100
15 TraesCS6D01G326400 chr3D 90.776 477 23 7 5526 6000 508334802 508335259 8.540000e-173 617
16 TraesCS6D01G326400 chr2B 90.717 474 27 4 5529 6000 765311694 765311236 3.070000e-172 616
17 TraesCS6D01G326400 chr2B 91.200 125 9 1 5382 5504 366986130 366986254 1.030000e-37 169
18 TraesCS6D01G326400 chr2B 93.939 99 5 1 5886 5984 49649051 49648954 1.350000e-31 148
19 TraesCS6D01G326400 chr3A 85.526 228 29 3 5775 6000 141012003 141012228 1.010000e-57 235
20 TraesCS6D01G326400 chr7B 86.813 182 20 4 5526 5707 669446135 669446312 3.670000e-47 200
21 TraesCS6D01G326400 chr7B 87.037 108 12 2 1104 1210 63567088 63567194 2.940000e-23 121
22 TraesCS6D01G326400 chr2A 93.860 114 7 0 5886 5999 32374178 32374065 7.990000e-39 172
23 TraesCS6D01G326400 chr2A 90.909 99 7 2 5886 5984 32374088 32373992 1.360000e-26 132
24 TraesCS6D01G326400 chr7A 87.963 108 11 2 1104 1210 109355585 109355691 6.310000e-25 126
25 TraesCS6D01G326400 chr7D 83.453 139 15 7 1078 1210 104900321 104900457 8.170000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G326400 chr6D 431459082 431465081 5999 False 11081.00 11081 100.00000 1 6000 1 chr6D.!!$F1 5999
1 TraesCS6D01G326400 chrUn 74548159 74553171 5012 False 1799.75 4743 92.03475 1 5037 4 chrUn.!!$F2 5036
2 TraesCS6D01G326400 chr6B 651414466 651419457 4991 False 1422.00 3158 92.14540 1 5049 5 chr6B.!!$F1 5048
3 TraesCS6D01G326400 chr3B 127326209 127326842 633 True 708.00 708 87.36500 5376 6000 1 chr3B.!!$R1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
951 1103 0.036952 CTGCCTTCTTCTTGGAGCGA 60.037 55.000 0.00 0.0 0.00 4.93 F
1355 1531 0.029567 CTCTCTCGGGGAAATCGTCG 59.970 60.000 0.00 0.0 0.00 5.12 F
1357 1533 0.248539 CTCTCGGGGAAATCGTCGTC 60.249 60.000 0.00 0.0 0.00 4.20 F
1548 1725 0.744281 CTTCGCCCTGTGGTTGTTTT 59.256 50.000 0.00 0.0 0.00 2.43 F
1657 1834 1.003839 TTCTGCGGCAGAATTCGGT 60.004 52.632 34.77 0.0 44.27 4.69 F
1838 2015 1.071699 TGTGGTGAGTAAGGACTTGGC 59.928 52.381 0.00 0.0 35.45 4.52 F
2689 2872 2.038659 CAGTTTGTGGTTGGATTGGGT 58.961 47.619 0.00 0.0 0.00 4.51 F
4202 4400 0.312102 GAAACTTCAGTGGCCTGTGC 59.688 55.000 3.32 0.0 39.82 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2630 2812 0.919710 ATAAGGAGGCTGGTGGGAAC 59.080 55.000 0.00 0.00 0.00 3.62 R
2713 2896 1.686428 CCGACTCTCATCCCTTCCTCA 60.686 57.143 0.00 0.00 0.00 3.86 R
3240 3435 4.692625 ACAGTGAGAATGATAGTGTGCAAC 59.307 41.667 0.00 0.00 37.35 4.17 R
3715 3911 4.615961 CCAACGTACTTCTGAACTAGTTCG 59.384 45.833 26.35 20.98 42.28 3.95 R
3719 3915 5.117355 TCACCAACGTACTTCTGAACTAG 57.883 43.478 0.00 0.00 0.00 2.57 R
3986 4182 3.602491 CGATTTCAAGCATAGTACGCTGC 60.602 47.826 13.00 13.00 40.35 5.25 R
4367 4565 0.108138 CTTCCAAGTCAGGTAGCCCG 60.108 60.000 0.00 0.00 35.12 6.13 R
5317 5517 0.036732 TCAAGCCTCAAAGCGTCCAT 59.963 50.000 0.00 0.00 38.01 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.980978 TCTTGAACTGAGTTTCTACTGTTGAG 59.019 38.462 0.00 0.00 33.84 3.02
155 233 2.989639 CGCAGGGTTGGAGATCCA 59.010 61.111 0.00 0.00 45.94 3.41
230 308 2.532715 ACACTGGTCATGGCCCCT 60.533 61.111 15.27 0.00 0.00 4.79
468 551 5.665916 TGCTGTGACAGAGATTAGAATGA 57.334 39.130 18.18 0.00 32.44 2.57
566 649 6.183360 CCAAATACGTTCTCCCAAAATAGCAT 60.183 38.462 0.00 0.00 0.00 3.79
577 660 3.635373 CCAAAATAGCATGACCAGAGCAT 59.365 43.478 0.00 0.00 0.00 3.79
789 887 8.485591 GCAGTCATGAAATCAAAAAGAAAGAAG 58.514 33.333 0.00 0.00 0.00 2.85
842 940 5.977129 TCGAAAGAAGAATTTTTGTTGGAGC 59.023 36.000 0.00 0.00 37.03 4.70
843 941 5.108254 CGAAAGAAGAATTTTTGTTGGAGCG 60.108 40.000 0.00 0.00 0.00 5.03
844 942 5.514274 AAGAAGAATTTTTGTTGGAGCGA 57.486 34.783 0.00 0.00 0.00 4.93
845 943 5.514274 AGAAGAATTTTTGTTGGAGCGAA 57.486 34.783 0.00 0.00 0.00 4.70
846 944 5.901552 AGAAGAATTTTTGTTGGAGCGAAA 58.098 33.333 0.00 0.00 0.00 3.46
950 1102 1.642952 GCTGCCTTCTTCTTGGAGCG 61.643 60.000 0.00 0.00 0.00 5.03
951 1103 0.036952 CTGCCTTCTTCTTGGAGCGA 60.037 55.000 0.00 0.00 0.00 4.93
1030 1192 2.255554 GTCTCTCGCACACGCAGA 59.744 61.111 0.00 0.00 39.84 4.26
1040 1202 2.182791 CACGCAGACGAGCCAGAT 59.817 61.111 0.00 0.00 43.93 2.90
1253 1428 1.421410 CCCCTCGAATCTGCGTTTCG 61.421 60.000 12.43 12.43 45.51 3.46
1256 1431 0.640768 CTCGAATCTGCGTTTCGGTC 59.359 55.000 16.13 0.00 44.55 4.79
1271 1446 4.148825 GTCTGGCGGCGATCTGGT 62.149 66.667 12.98 0.00 0.00 4.00
1335 1511 3.889520 AGTCTAGGGTTTCGGTTCATC 57.110 47.619 0.00 0.00 0.00 2.92
1342 1518 2.418884 GGGTTTCGGTTCATCCTCTCTC 60.419 54.545 0.00 0.00 0.00 3.20
1346 1522 1.739338 CGGTTCATCCTCTCTCGGGG 61.739 65.000 0.00 0.00 0.00 5.73
1348 1524 1.486211 GTTCATCCTCTCTCGGGGAA 58.514 55.000 0.00 0.00 35.08 3.97
1349 1525 1.831736 GTTCATCCTCTCTCGGGGAAA 59.168 52.381 0.00 0.00 35.08 3.13
1351 1527 2.320781 TCATCCTCTCTCGGGGAAATC 58.679 52.381 0.00 0.00 35.08 2.17
1352 1528 1.000283 CATCCTCTCTCGGGGAAATCG 60.000 57.143 0.00 0.00 35.08 3.34
1353 1529 0.033405 TCCTCTCTCGGGGAAATCGT 60.033 55.000 0.00 0.00 0.00 3.73
1354 1530 0.386113 CCTCTCTCGGGGAAATCGTC 59.614 60.000 0.00 0.00 0.00 4.20
1355 1531 0.029567 CTCTCTCGGGGAAATCGTCG 59.970 60.000 0.00 0.00 0.00 5.12
1356 1532 0.679002 TCTCTCGGGGAAATCGTCGT 60.679 55.000 0.00 0.00 0.00 4.34
1357 1533 0.248539 CTCTCGGGGAAATCGTCGTC 60.249 60.000 0.00 0.00 0.00 4.20
1358 1534 1.585521 CTCGGGGAAATCGTCGTCG 60.586 63.158 0.00 0.00 38.55 5.12
1359 1535 3.252484 CGGGGAAATCGTCGTCGC 61.252 66.667 0.00 0.00 36.96 5.19
1360 1536 2.889018 GGGGAAATCGTCGTCGCC 60.889 66.667 0.00 2.34 39.38 5.54
1383 1559 2.008242 TCTGTGGATTTGTTTGGGGG 57.992 50.000 0.00 0.00 0.00 5.40
1451 1627 4.719616 GTTTGCGCTCGCGGTCAC 62.720 66.667 9.73 0.00 45.51 3.67
1473 1649 1.203001 CCTAGGGTTTTGGTTCCTGCA 60.203 52.381 0.00 0.00 32.46 4.41
1501 1677 1.070289 GAACCTGGTCGTCACCTTCTT 59.930 52.381 0.00 0.00 44.17 2.52
1515 1691 2.293399 ACCTTCTTGTGGATTCGTTTGC 59.707 45.455 0.00 0.00 0.00 3.68
1517 1693 0.871722 TCTTGTGGATTCGTTTGCGG 59.128 50.000 0.00 0.00 38.89 5.69
1548 1725 0.744281 CTTCGCCCTGTGGTTGTTTT 59.256 50.000 0.00 0.00 0.00 2.43
1549 1726 1.950909 CTTCGCCCTGTGGTTGTTTTA 59.049 47.619 0.00 0.00 0.00 1.52
1556 1733 3.951680 CCCTGTGGTTGTTTTACAGTTCT 59.048 43.478 0.00 0.00 40.04 3.01
1557 1734 5.127491 CCCTGTGGTTGTTTTACAGTTCTA 58.873 41.667 0.00 0.00 40.04 2.10
1558 1735 5.238650 CCCTGTGGTTGTTTTACAGTTCTAG 59.761 44.000 0.00 0.00 40.04 2.43
1567 1744 7.305813 TGTTTTACAGTTCTAGTATGTGGGA 57.694 36.000 7.27 0.00 0.00 4.37
1572 1749 2.365617 AGTTCTAGTATGTGGGATGGCG 59.634 50.000 0.00 0.00 0.00 5.69
1632 1809 4.036971 TGCCGTTTATTTTGTACTGCTTGT 59.963 37.500 0.00 0.00 0.00 3.16
1648 1825 1.603802 CTTGTCTCTTTTTCTGCGGCA 59.396 47.619 1.29 1.29 0.00 5.69
1657 1834 1.003839 TTCTGCGGCAGAATTCGGT 60.004 52.632 34.77 0.00 44.27 4.69
1663 1840 1.685302 CGGCAGAATTCGGTTGTTTG 58.315 50.000 7.44 0.00 0.00 2.93
1817 1994 2.357569 GGCCAAGAGGATCAATGACCTT 60.358 50.000 0.00 0.00 37.82 3.50
1838 2015 1.071699 TGTGGTGAGTAAGGACTTGGC 59.928 52.381 0.00 0.00 35.45 4.52
1851 2028 3.706086 AGGACTTGGCAATCTGTTTGTTT 59.294 39.130 0.00 0.00 37.65 2.83
1855 2032 4.869861 ACTTGGCAATCTGTTTGTTTGTTC 59.130 37.500 0.00 0.00 37.65 3.18
1856 2033 4.462508 TGGCAATCTGTTTGTTTGTTCA 57.537 36.364 0.00 0.00 37.65 3.18
1857 2034 5.021033 TGGCAATCTGTTTGTTTGTTCAT 57.979 34.783 0.00 0.00 37.65 2.57
1877 2054 3.799432 TCTCTCTAGAGATGTAGCCCC 57.201 52.381 22.59 0.00 45.48 5.80
1881 2058 4.411927 TCTCTAGAGATGTAGCCCCATTC 58.588 47.826 18.76 0.00 31.41 2.67
1922 2099 4.044426 GACCAATTGTCTGCACTTTGTTC 58.956 43.478 4.43 0.00 41.03 3.18
2003 2180 5.895928 TGCATCTACTGAAGATAGTGTGTC 58.104 41.667 0.00 0.00 43.42 3.67
2051 2228 8.739972 GGTTCAGAATTTAAGGTGTATGAATGT 58.260 33.333 0.00 0.00 0.00 2.71
2109 2288 7.223971 GCATTTGTTTGATGATATTGCATCTGT 59.776 33.333 0.00 0.00 43.89 3.41
2162 2341 8.341903 CCCATTTGGTTTGTGTTTTAGAATTTC 58.658 33.333 0.00 0.00 0.00 2.17
2229 2409 5.580691 TCATACTTACATACAACTGTGCAGC 59.419 40.000 0.00 0.00 0.00 5.25
2480 2662 6.782082 TTAGCATGCATAATTGTTTGGGTA 57.218 33.333 21.98 0.00 0.00 3.69
2689 2872 2.038659 CAGTTTGTGGTTGGATTGGGT 58.961 47.619 0.00 0.00 0.00 4.51
2713 2896 7.415206 GGTGATAAAGTTTCGCCAACTGATATT 60.415 37.037 2.81 0.00 45.77 1.28
2819 3002 5.885912 AGTAATTCGCACCTGGTGATTTATT 59.114 36.000 30.23 21.36 35.51 1.40
2902 3087 4.160642 TGCCATCATGTAAGCAGAGAAT 57.839 40.909 0.00 0.00 0.00 2.40
2986 3171 7.696992 TTATCATTTGTTTGTTCCCCTAGTC 57.303 36.000 0.00 0.00 0.00 2.59
3046 3231 8.908786 AACTAAGAACATGTTGAATCTCTGAA 57.091 30.769 17.58 0.00 0.00 3.02
3240 3435 6.350445 CCCAGAATTGTTATCCTTTTCTGTGG 60.350 42.308 9.38 7.00 40.93 4.17
3715 3911 4.393680 TGTTTCATCCGTGTAATTGGTAGC 59.606 41.667 0.00 0.00 0.00 3.58
3719 3915 2.609350 TCCGTGTAATTGGTAGCGAAC 58.391 47.619 0.00 0.00 0.00 3.95
3733 3929 5.106396 TGGTAGCGAACTAGTTCAGAAGTAC 60.106 44.000 29.95 21.38 39.46 2.73
3986 4182 1.477558 GCTGGGGGTGATAATGAGGTG 60.478 57.143 0.00 0.00 0.00 4.00
4130 4326 2.556144 TATGGCATGATGCTCACCTC 57.444 50.000 17.84 0.00 44.28 3.85
4196 4394 8.045176 ACTTATGATTAAGAAACTTCAGTGGC 57.955 34.615 0.03 0.00 38.56 5.01
4202 4400 0.312102 GAAACTTCAGTGGCCTGTGC 59.688 55.000 3.32 0.00 39.82 4.57
4218 4416 5.183140 GGCCTGTGCTATTTAAAACTCTTCA 59.817 40.000 0.00 0.00 37.74 3.02
4221 4419 5.685841 TGTGCTATTTAAAACTCTTCACGC 58.314 37.500 0.00 0.00 0.00 5.34
4278 4476 4.019411 TGGCCACATGAATAGAGTTGAGAA 60.019 41.667 0.00 0.00 0.00 2.87
4289 4487 7.180229 TGAATAGAGTTGAGAAGGTAACCATCA 59.820 37.037 0.00 0.00 37.17 3.07
4293 4491 7.234355 AGAGTTGAGAAGGTAACCATCATTTT 58.766 34.615 0.00 0.00 37.17 1.82
4367 4565 4.556699 CGTTTGGACAGAAAGGTGGAATTC 60.557 45.833 0.00 0.00 0.00 2.17
4505 4703 2.162681 GAGTACATGGGCTTTGCACTT 58.837 47.619 0.00 0.00 30.56 3.16
4550 4750 0.468029 ACTGTTTCAGGCACCTTGGG 60.468 55.000 1.90 0.00 35.51 4.12
4556 4756 2.450502 AGGCACCTTGGGTCCAGT 60.451 61.111 0.00 0.00 31.02 4.00
4569 4769 3.244561 TGGGTCCAGTCTCTGAACAATTC 60.245 47.826 0.00 0.00 32.44 2.17
4586 4786 4.338400 ACAATTCGATCCGACTGTCTGATA 59.662 41.667 13.63 1.01 34.89 2.15
4599 4799 5.869579 ACTGTCTGATATGTTGTTTCAGGT 58.130 37.500 0.00 0.00 37.93 4.00
4641 4841 2.817834 GAAGCCGGCATGTACGCA 60.818 61.111 31.54 0.00 0.00 5.24
4677 4877 3.810386 GGAAAACTGTGACAGAGAAGGAC 59.190 47.826 20.97 3.83 35.18 3.85
4701 4901 2.398498 CTCGACTCAGTCAACAAGGTG 58.602 52.381 5.45 0.00 32.09 4.00
4704 4904 3.824443 TCGACTCAGTCAACAAGGTGATA 59.176 43.478 5.45 0.00 32.09 2.15
4713 4913 5.253096 AGTCAACAAGGTGATAAAGGGGTAT 59.747 40.000 0.00 0.00 0.00 2.73
4725 4925 7.775561 GTGATAAAGGGGTATCAGAAATTCAGT 59.224 37.037 0.00 0.00 40.36 3.41
4737 4937 1.247567 AATTCAGTGCAACCCCGAAG 58.752 50.000 0.00 0.00 37.80 3.79
4769 4969 1.544691 CAATTGAGCAAGCAGGCTTCT 59.455 47.619 3.02 4.80 45.99 2.85
4770 4970 1.461559 ATTGAGCAAGCAGGCTTCTC 58.538 50.000 18.34 18.34 45.99 2.87
4773 4973 1.085893 GAGCAAGCAGGCTTCTCTTC 58.914 55.000 18.10 6.89 45.99 2.87
4775 4975 0.671781 GCAAGCAGGCTTCTCTTCGA 60.672 55.000 3.02 0.00 33.42 3.71
4844 5044 0.251341 ACATCCTTTCTGTGTGCCCC 60.251 55.000 0.00 0.00 0.00 5.80
4857 5057 1.145945 TGTGCCCCTGATGGTTGTAAA 59.854 47.619 0.00 0.00 0.00 2.01
4951 5151 6.125327 TCATAAAGCTTTGTCGAAACACAA 57.875 33.333 22.02 0.00 34.35 3.33
4965 5165 5.036737 CGAAACACAATTTTCAGCTTGTCT 58.963 37.500 0.00 0.00 35.54 3.41
5042 5242 3.853475 ACTTTGTATGTACACGTAGCCC 58.147 45.455 0.00 0.00 35.64 5.19
5043 5243 3.258872 ACTTTGTATGTACACGTAGCCCA 59.741 43.478 0.00 0.00 35.64 5.36
5044 5244 4.081309 ACTTTGTATGTACACGTAGCCCAT 60.081 41.667 0.00 0.00 35.64 4.00
5045 5245 5.127519 ACTTTGTATGTACACGTAGCCCATA 59.872 40.000 0.00 0.00 35.64 2.74
5046 5246 5.794726 TTGTATGTACACGTAGCCCATAT 57.205 39.130 0.00 0.00 35.64 1.78
5048 5248 3.678056 ATGTACACGTAGCCCATATGG 57.322 47.619 15.41 15.41 37.09 2.74
5049 5249 2.390696 TGTACACGTAGCCCATATGGT 58.609 47.619 20.46 5.55 36.04 3.55
5050 5250 2.767394 TGTACACGTAGCCCATATGGTT 59.233 45.455 20.46 10.69 36.04 3.67
5051 5251 2.325583 ACACGTAGCCCATATGGTTG 57.674 50.000 20.46 7.30 36.04 3.77
5052 5252 1.557832 ACACGTAGCCCATATGGTTGT 59.442 47.619 20.46 10.01 36.04 3.32
5053 5253 2.026636 ACACGTAGCCCATATGGTTGTT 60.027 45.455 20.46 6.78 36.04 2.83
5054 5254 2.612212 CACGTAGCCCATATGGTTGTTC 59.388 50.000 20.46 6.14 36.04 3.18
5055 5255 1.864711 CGTAGCCCATATGGTTGTTCG 59.135 52.381 20.46 13.43 36.04 3.95
5056 5256 2.218603 GTAGCCCATATGGTTGTTCGG 58.781 52.381 20.46 4.37 36.04 4.30
5057 5257 0.751643 AGCCCATATGGTTGTTCGGC 60.752 55.000 20.46 13.93 36.04 5.54
5058 5258 0.751643 GCCCATATGGTTGTTCGGCT 60.752 55.000 20.46 0.00 36.04 5.52
5059 5259 1.308998 CCCATATGGTTGTTCGGCTC 58.691 55.000 20.46 0.00 0.00 4.70
5060 5260 1.308998 CCATATGGTTGTTCGGCTCC 58.691 55.000 14.09 0.00 0.00 4.70
5061 5261 0.937304 CATATGGTTGTTCGGCTCCG 59.063 55.000 1.14 1.14 41.35 4.63
5062 5262 0.539986 ATATGGTTGTTCGGCTCCGT 59.460 50.000 8.28 0.00 40.74 4.69
5063 5263 0.322322 TATGGTTGTTCGGCTCCGTT 59.678 50.000 8.28 0.00 40.74 4.44
5064 5264 1.234615 ATGGTTGTTCGGCTCCGTTG 61.235 55.000 8.28 0.00 40.74 4.10
5065 5265 1.595929 GGTTGTTCGGCTCCGTTGA 60.596 57.895 8.28 0.00 40.74 3.18
5066 5266 1.566018 GGTTGTTCGGCTCCGTTGAG 61.566 60.000 8.28 0.00 41.84 3.02
5067 5267 1.301401 TTGTTCGGCTCCGTTGAGG 60.301 57.895 8.28 0.00 39.14 3.86
5073 5273 3.706373 GCTCCGTTGAGGCAGGGA 61.706 66.667 0.00 0.00 39.14 4.20
5074 5274 2.266055 CTCCGTTGAGGCAGGGAC 59.734 66.667 0.00 0.00 40.77 4.46
5075 5275 3.649277 CTCCGTTGAGGCAGGGACG 62.649 68.421 0.00 0.00 40.77 4.79
5076 5276 3.691342 CCGTTGAGGCAGGGACGA 61.691 66.667 0.00 0.00 37.69 4.20
5077 5277 2.579201 CGTTGAGGCAGGGACGAT 59.421 61.111 0.00 0.00 37.69 3.73
5078 5278 1.811266 CGTTGAGGCAGGGACGATG 60.811 63.158 0.00 0.00 37.69 3.84
5079 5279 1.596934 GTTGAGGCAGGGACGATGA 59.403 57.895 0.00 0.00 0.00 2.92
5080 5280 0.179000 GTTGAGGCAGGGACGATGAT 59.821 55.000 0.00 0.00 0.00 2.45
5081 5281 0.178767 TTGAGGCAGGGACGATGATG 59.821 55.000 0.00 0.00 0.00 3.07
5082 5282 0.687427 TGAGGCAGGGACGATGATGA 60.687 55.000 0.00 0.00 0.00 2.92
5083 5283 0.249657 GAGGCAGGGACGATGATGAC 60.250 60.000 0.00 0.00 0.00 3.06
5084 5284 1.592669 GGCAGGGACGATGATGACG 60.593 63.158 0.00 0.00 0.00 4.35
5085 5285 1.592669 GCAGGGACGATGATGACGG 60.593 63.158 0.00 0.00 34.93 4.79
5086 5286 1.592669 CAGGGACGATGATGACGGC 60.593 63.158 0.00 0.00 38.12 5.68
5087 5287 2.058001 AGGGACGATGATGACGGCA 61.058 57.895 0.00 0.00 40.86 5.69
5088 5288 1.883084 GGGACGATGATGACGGCAC 60.883 63.158 0.00 0.00 40.86 5.01
5103 5303 4.047834 CACGCTCCAGTGCTTTCA 57.952 55.556 0.00 0.00 35.17 2.69
5104 5304 1.864862 CACGCTCCAGTGCTTTCAG 59.135 57.895 0.00 0.00 35.17 3.02
5105 5305 0.882042 CACGCTCCAGTGCTTTCAGT 60.882 55.000 0.00 0.00 35.17 3.41
5106 5306 0.601311 ACGCTCCAGTGCTTTCAGTC 60.601 55.000 0.00 0.00 0.00 3.51
5107 5307 1.621301 CGCTCCAGTGCTTTCAGTCG 61.621 60.000 0.00 0.00 0.00 4.18
5108 5308 0.601311 GCTCCAGTGCTTTCAGTCGT 60.601 55.000 0.00 0.00 0.00 4.34
5109 5309 1.423395 CTCCAGTGCTTTCAGTCGTC 58.577 55.000 0.00 0.00 0.00 4.20
5110 5310 0.318699 TCCAGTGCTTTCAGTCGTCG 60.319 55.000 0.00 0.00 0.00 5.12
5111 5311 0.597637 CCAGTGCTTTCAGTCGTCGT 60.598 55.000 0.00 0.00 0.00 4.34
5112 5312 1.209128 CAGTGCTTTCAGTCGTCGTT 58.791 50.000 0.00 0.00 0.00 3.85
5113 5313 1.071239 CAGTGCTTTCAGTCGTCGTTG 60.071 52.381 0.00 0.00 0.00 4.10
5114 5314 0.232303 GTGCTTTCAGTCGTCGTTGG 59.768 55.000 0.00 0.00 0.00 3.77
5115 5315 0.103390 TGCTTTCAGTCGTCGTTGGA 59.897 50.000 0.00 0.00 0.00 3.53
5116 5316 1.270094 TGCTTTCAGTCGTCGTTGGAT 60.270 47.619 0.00 0.00 0.00 3.41
5117 5317 1.798813 GCTTTCAGTCGTCGTTGGATT 59.201 47.619 0.00 0.00 0.00 3.01
5118 5318 2.411547 GCTTTCAGTCGTCGTTGGATTG 60.412 50.000 0.00 0.00 0.00 2.67
5119 5319 1.790755 TTCAGTCGTCGTTGGATTGG 58.209 50.000 0.00 0.00 0.00 3.16
5120 5320 0.037697 TCAGTCGTCGTTGGATTGGG 60.038 55.000 0.00 0.00 0.00 4.12
5121 5321 0.320421 CAGTCGTCGTTGGATTGGGT 60.320 55.000 0.00 0.00 0.00 4.51
5122 5322 0.320421 AGTCGTCGTTGGATTGGGTG 60.320 55.000 0.00 0.00 0.00 4.61
5123 5323 1.004320 TCGTCGTTGGATTGGGTGG 60.004 57.895 0.00 0.00 0.00 4.61
5124 5324 1.302192 CGTCGTTGGATTGGGTGGT 60.302 57.895 0.00 0.00 0.00 4.16
5125 5325 1.296056 CGTCGTTGGATTGGGTGGTC 61.296 60.000 0.00 0.00 0.00 4.02
5126 5326 0.958876 GTCGTTGGATTGGGTGGTCC 60.959 60.000 0.00 0.00 35.02 4.46
5127 5327 1.074072 CGTTGGATTGGGTGGTCCA 59.926 57.895 0.00 0.00 45.43 4.02
5128 5328 0.323360 CGTTGGATTGGGTGGTCCAT 60.323 55.000 0.00 0.00 46.52 3.41
5129 5329 1.185315 GTTGGATTGGGTGGTCCATG 58.815 55.000 0.00 0.00 46.52 3.66
5130 5330 1.079796 TTGGATTGGGTGGTCCATGA 58.920 50.000 0.00 0.00 46.52 3.07
5131 5331 1.079796 TGGATTGGGTGGTCCATGAA 58.920 50.000 0.00 0.00 46.52 2.57
5132 5332 1.272425 TGGATTGGGTGGTCCATGAAC 60.272 52.381 0.00 0.00 46.52 3.18
5133 5333 1.272425 GGATTGGGTGGTCCATGAACA 60.272 52.381 0.00 0.00 46.52 3.18
5134 5334 2.624029 GGATTGGGTGGTCCATGAACAT 60.624 50.000 0.00 0.00 46.52 2.71
5135 5335 3.372566 GGATTGGGTGGTCCATGAACATA 60.373 47.826 0.00 0.00 46.52 2.29
5136 5336 3.364460 TTGGGTGGTCCATGAACATAG 57.636 47.619 0.00 0.00 46.52 2.23
5137 5337 2.274542 TGGGTGGTCCATGAACATAGT 58.725 47.619 0.00 0.00 41.46 2.12
5138 5338 2.647299 TGGGTGGTCCATGAACATAGTT 59.353 45.455 0.00 0.00 41.46 2.24
5139 5339 3.016736 GGGTGGTCCATGAACATAGTTG 58.983 50.000 0.00 0.00 29.64 3.16
5140 5340 2.423538 GGTGGTCCATGAACATAGTTGC 59.576 50.000 0.00 0.00 29.64 4.17
5141 5341 3.081061 GTGGTCCATGAACATAGTTGCA 58.919 45.455 0.00 0.00 29.64 4.08
5142 5342 3.505680 GTGGTCCATGAACATAGTTGCAA 59.494 43.478 0.00 0.00 29.64 4.08
5143 5343 4.158394 GTGGTCCATGAACATAGTTGCAAT 59.842 41.667 0.59 0.00 29.64 3.56
5144 5344 4.771577 TGGTCCATGAACATAGTTGCAATT 59.228 37.500 0.59 0.00 0.00 2.32
5145 5345 5.245751 TGGTCCATGAACATAGTTGCAATTT 59.754 36.000 0.59 0.00 0.00 1.82
5146 5346 6.165577 GGTCCATGAACATAGTTGCAATTTT 58.834 36.000 0.59 0.00 0.00 1.82
5147 5347 6.650390 GGTCCATGAACATAGTTGCAATTTTT 59.350 34.615 0.59 0.00 0.00 1.94
5148 5348 7.360269 GGTCCATGAACATAGTTGCAATTTTTG 60.360 37.037 0.59 2.75 0.00 2.44
5149 5349 7.171337 GTCCATGAACATAGTTGCAATTTTTGT 59.829 33.333 0.59 3.42 0.00 2.83
5150 5350 8.363390 TCCATGAACATAGTTGCAATTTTTGTA 58.637 29.630 0.59 0.00 0.00 2.41
5151 5351 9.153721 CCATGAACATAGTTGCAATTTTTGTAT 57.846 29.630 0.59 0.00 0.00 2.29
5156 5356 9.651913 AACATAGTTGCAATTTTTGTATTAGGG 57.348 29.630 0.59 0.00 0.00 3.53
5157 5357 7.763985 ACATAGTTGCAATTTTTGTATTAGGGC 59.236 33.333 0.59 0.00 0.00 5.19
5158 5358 6.107901 AGTTGCAATTTTTGTATTAGGGCA 57.892 33.333 0.59 0.00 0.00 5.36
5159 5359 6.165577 AGTTGCAATTTTTGTATTAGGGCAG 58.834 36.000 0.59 0.00 0.00 4.85
5160 5360 5.736951 TGCAATTTTTGTATTAGGGCAGT 57.263 34.783 0.00 0.00 0.00 4.40
5161 5361 5.477510 TGCAATTTTTGTATTAGGGCAGTG 58.522 37.500 0.00 0.00 0.00 3.66
5162 5362 5.244851 TGCAATTTTTGTATTAGGGCAGTGA 59.755 36.000 0.00 0.00 0.00 3.41
5163 5363 6.070881 TGCAATTTTTGTATTAGGGCAGTGAT 60.071 34.615 0.00 0.00 0.00 3.06
5164 5364 6.476706 GCAATTTTTGTATTAGGGCAGTGATC 59.523 38.462 0.00 0.00 0.00 2.92
5165 5365 7.631377 GCAATTTTTGTATTAGGGCAGTGATCT 60.631 37.037 0.00 0.00 0.00 2.75
5166 5366 6.757897 TTTTTGTATTAGGGCAGTGATCTG 57.242 37.500 0.00 0.00 43.87 2.90
5174 5374 3.190849 CAGTGATCTGCGCCGGTG 61.191 66.667 11.67 11.67 34.79 4.94
5175 5375 3.695606 AGTGATCTGCGCCGGTGT 61.696 61.111 17.91 0.00 0.00 4.16
5176 5376 3.490759 GTGATCTGCGCCGGTGTG 61.491 66.667 17.91 10.23 0.00 3.82
5177 5377 4.002506 TGATCTGCGCCGGTGTGT 62.003 61.111 17.91 0.00 0.00 3.72
5178 5378 3.188786 GATCTGCGCCGGTGTGTC 61.189 66.667 17.91 6.13 0.00 3.67
5192 5392 4.728102 TGTCGGCCGAACGCGAAT 62.728 61.111 32.93 0.00 40.82 3.34
5193 5393 3.910104 GTCGGCCGAACGCGAATC 61.910 66.667 32.93 11.35 40.82 2.52
5206 5406 3.252484 GAATCGTTCGGCCGGTCG 61.252 66.667 25.52 25.52 0.00 4.79
5207 5407 4.807039 AATCGTTCGGCCGGTCGG 62.807 66.667 30.66 13.32 38.57 4.79
5223 5423 4.148825 GGCTGCTCACCGTCGGAT 62.149 66.667 20.51 0.00 0.00 4.18
5224 5424 2.583593 GCTGCTCACCGTCGGATC 60.584 66.667 20.51 4.16 0.00 3.36
5225 5425 2.278206 CTGCTCACCGTCGGATCG 60.278 66.667 20.51 6.01 0.00 3.69
5226 5426 4.492160 TGCTCACCGTCGGATCGC 62.492 66.667 20.51 16.24 0.00 4.58
5227 5427 4.194720 GCTCACCGTCGGATCGCT 62.195 66.667 20.51 0.00 0.00 4.93
5228 5428 2.490217 CTCACCGTCGGATCGCTT 59.510 61.111 20.51 0.00 0.00 4.68
5229 5429 1.153823 CTCACCGTCGGATCGCTTT 60.154 57.895 20.51 0.00 0.00 3.51
5230 5430 1.413767 CTCACCGTCGGATCGCTTTG 61.414 60.000 20.51 3.63 0.00 2.77
5231 5431 2.813908 ACCGTCGGATCGCTTTGC 60.814 61.111 20.51 0.00 0.00 3.68
5232 5432 3.564027 CCGTCGGATCGCTTTGCC 61.564 66.667 4.91 0.00 0.00 4.52
5233 5433 3.564027 CGTCGGATCGCTTTGCCC 61.564 66.667 0.00 0.00 0.00 5.36
5234 5434 2.435938 GTCGGATCGCTTTGCCCA 60.436 61.111 0.00 0.00 0.00 5.36
5235 5435 1.819632 GTCGGATCGCTTTGCCCAT 60.820 57.895 0.00 0.00 0.00 4.00
5236 5436 1.819208 TCGGATCGCTTTGCCCATG 60.819 57.895 0.00 0.00 0.00 3.66
5237 5437 2.837883 CGGATCGCTTTGCCCATGG 61.838 63.158 4.14 4.14 0.00 3.66
5247 5447 4.065110 GCCCATGGCCGTTAGATC 57.935 61.111 6.09 0.00 44.06 2.75
5248 5448 1.961277 GCCCATGGCCGTTAGATCG 60.961 63.158 6.09 0.00 44.06 3.69
5249 5449 1.961277 CCCATGGCCGTTAGATCGC 60.961 63.158 6.09 0.00 0.00 4.58
5250 5450 2.310233 CCATGGCCGTTAGATCGCG 61.310 63.158 0.00 0.00 0.00 5.87
5251 5451 2.661866 ATGGCCGTTAGATCGCGC 60.662 61.111 0.00 0.00 0.00 6.86
5252 5452 4.884257 TGGCCGTTAGATCGCGCC 62.884 66.667 0.00 0.00 42.72 6.53
5254 5454 4.587189 GCCGTTAGATCGCGCCCT 62.587 66.667 0.00 2.87 0.00 5.19
5255 5455 2.106332 CCGTTAGATCGCGCCCTT 59.894 61.111 0.00 0.00 0.00 3.95
5256 5456 1.949631 CCGTTAGATCGCGCCCTTC 60.950 63.158 0.00 0.00 0.00 3.46
5257 5457 1.065928 CGTTAGATCGCGCCCTTCT 59.934 57.895 0.00 4.09 0.00 2.85
5258 5458 1.209275 CGTTAGATCGCGCCCTTCTG 61.209 60.000 0.00 0.00 0.00 3.02
5259 5459 0.179108 GTTAGATCGCGCCCTTCTGT 60.179 55.000 0.00 0.00 0.00 3.41
5260 5460 0.102481 TTAGATCGCGCCCTTCTGTC 59.898 55.000 0.00 0.00 0.00 3.51
5261 5461 1.735376 TAGATCGCGCCCTTCTGTCC 61.735 60.000 0.00 0.00 0.00 4.02
5262 5462 4.162690 ATCGCGCCCTTCTGTCCC 62.163 66.667 0.00 0.00 0.00 4.46
5267 5467 4.097361 GCCCTTCTGTCCCCCGTC 62.097 72.222 0.00 0.00 0.00 4.79
5268 5468 3.400054 CCCTTCTGTCCCCCGTCC 61.400 72.222 0.00 0.00 0.00 4.79
5269 5469 2.284699 CCTTCTGTCCCCCGTCCT 60.285 66.667 0.00 0.00 0.00 3.85
5270 5470 2.359967 CCTTCTGTCCCCCGTCCTC 61.360 68.421 0.00 0.00 0.00 3.71
5271 5471 2.678934 TTCTGTCCCCCGTCCTCG 60.679 66.667 0.00 0.00 0.00 4.63
5272 5472 3.518552 TTCTGTCCCCCGTCCTCGT 62.519 63.158 0.00 0.00 35.01 4.18
5273 5473 3.760035 CTGTCCCCCGTCCTCGTG 61.760 72.222 0.00 0.00 35.01 4.35
5281 5481 3.382832 CGTCCTCGTGGCTCCCTT 61.383 66.667 0.00 0.00 0.00 3.95
5282 5482 2.579738 GTCCTCGTGGCTCCCTTC 59.420 66.667 0.00 0.00 0.00 3.46
5283 5483 2.119611 TCCTCGTGGCTCCCTTCA 59.880 61.111 0.00 0.00 0.00 3.02
5284 5484 1.306141 TCCTCGTGGCTCCCTTCAT 60.306 57.895 0.00 0.00 0.00 2.57
5285 5485 1.144936 CCTCGTGGCTCCCTTCATC 59.855 63.158 0.00 0.00 0.00 2.92
5286 5486 1.144936 CTCGTGGCTCCCTTCATCC 59.855 63.158 0.00 0.00 0.00 3.51
5287 5487 2.190578 CGTGGCTCCCTTCATCCC 59.809 66.667 0.00 0.00 0.00 3.85
5288 5488 2.597903 GTGGCTCCCTTCATCCCC 59.402 66.667 0.00 0.00 0.00 4.81
5289 5489 3.089874 TGGCTCCCTTCATCCCCG 61.090 66.667 0.00 0.00 0.00 5.73
5290 5490 3.090532 GGCTCCCTTCATCCCCGT 61.091 66.667 0.00 0.00 0.00 5.28
5291 5491 2.190578 GCTCCCTTCATCCCCGTG 59.809 66.667 0.00 0.00 0.00 4.94
5292 5492 2.911143 CTCCCTTCATCCCCGTGG 59.089 66.667 0.00 0.00 0.00 4.94
5293 5493 3.406595 CTCCCTTCATCCCCGTGGC 62.407 68.421 0.00 0.00 0.00 5.01
5294 5494 4.856801 CCCTTCATCCCCGTGGCG 62.857 72.222 0.00 0.00 0.00 5.69
5296 5496 4.473520 CTTCATCCCCGTGGCGCT 62.474 66.667 7.64 0.00 0.00 5.92
5297 5497 4.776322 TTCATCCCCGTGGCGCTG 62.776 66.667 7.64 0.00 0.00 5.18
5300 5500 4.778143 ATCCCCGTGGCGCTGTTC 62.778 66.667 7.64 0.00 0.00 3.18
5326 5526 2.360350 CACCTGCCATGGACGCTT 60.360 61.111 18.40 0.00 0.00 4.68
5327 5527 1.973281 CACCTGCCATGGACGCTTT 60.973 57.895 18.40 0.00 0.00 3.51
5328 5528 1.973281 ACCTGCCATGGACGCTTTG 60.973 57.895 18.40 0.00 0.00 2.77
5329 5529 1.675310 CCTGCCATGGACGCTTTGA 60.675 57.895 18.40 0.00 0.00 2.69
5330 5530 1.651240 CCTGCCATGGACGCTTTGAG 61.651 60.000 18.40 0.00 0.00 3.02
5331 5531 1.651240 CTGCCATGGACGCTTTGAGG 61.651 60.000 18.40 0.00 0.00 3.86
5332 5532 3.056313 GCCATGGACGCTTTGAGGC 62.056 63.158 18.40 0.00 0.00 4.70
5333 5533 1.377725 CCATGGACGCTTTGAGGCT 60.378 57.895 5.56 0.00 0.00 4.58
5334 5534 0.962356 CCATGGACGCTTTGAGGCTT 60.962 55.000 5.56 0.00 0.00 4.35
5335 5535 0.169672 CATGGACGCTTTGAGGCTTG 59.830 55.000 0.00 0.00 0.00 4.01
5336 5536 0.036732 ATGGACGCTTTGAGGCTTGA 59.963 50.000 0.00 0.00 0.00 3.02
5337 5537 0.884704 TGGACGCTTTGAGGCTTGAC 60.885 55.000 0.00 0.00 0.00 3.18
5338 5538 1.578206 GGACGCTTTGAGGCTTGACC 61.578 60.000 0.00 0.00 39.61 4.02
5347 5547 3.690745 GGCTTGACCTTGCAGCAT 58.309 55.556 0.00 0.00 34.51 3.79
5348 5548 1.509923 GGCTTGACCTTGCAGCATC 59.490 57.895 0.00 0.00 34.51 3.91
5349 5549 1.246056 GGCTTGACCTTGCAGCATCA 61.246 55.000 0.00 0.00 34.51 3.07
5350 5550 0.109412 GCTTGACCTTGCAGCATCAC 60.109 55.000 0.00 0.00 0.00 3.06
5351 5551 0.524862 CTTGACCTTGCAGCATCACC 59.475 55.000 0.00 0.00 0.00 4.02
5352 5552 0.178995 TTGACCTTGCAGCATCACCA 60.179 50.000 0.00 0.00 0.00 4.17
5353 5553 0.607217 TGACCTTGCAGCATCACCAG 60.607 55.000 0.00 0.00 0.00 4.00
5354 5554 1.930908 GACCTTGCAGCATCACCAGC 61.931 60.000 0.00 0.00 0.00 4.85
5355 5555 1.677966 CCTTGCAGCATCACCAGCT 60.678 57.895 0.00 0.00 44.62 4.24
5356 5556 1.248785 CCTTGCAGCATCACCAGCTT 61.249 55.000 0.00 0.00 41.14 3.74
5357 5557 0.109272 CTTGCAGCATCACCAGCTTG 60.109 55.000 0.00 0.00 41.14 4.01
5358 5558 2.149803 TTGCAGCATCACCAGCTTGC 62.150 55.000 0.00 0.00 41.14 4.01
5359 5559 2.882876 CAGCATCACCAGCTTGCC 59.117 61.111 3.72 0.00 41.14 4.52
5360 5560 2.749044 AGCATCACCAGCTTGCCG 60.749 61.111 3.72 0.00 39.87 5.69
5361 5561 4.487412 GCATCACCAGCTTGCCGC 62.487 66.667 0.00 0.00 39.57 6.53
5402 5602 4.498520 CGCTGTCCTCGTCGCCAT 62.499 66.667 0.00 0.00 0.00 4.40
5403 5603 2.583593 GCTGTCCTCGTCGCCATC 60.584 66.667 0.00 0.00 0.00 3.51
5407 5607 3.066190 TCCTCGTCGCCATCGGTT 61.066 61.111 0.00 0.00 36.13 4.44
5412 5612 1.736645 CGTCGCCATCGGTTGTTCT 60.737 57.895 0.00 0.00 36.13 3.01
5415 5615 1.375396 CGCCATCGGTTGTTCTCCA 60.375 57.895 0.00 0.00 0.00 3.86
5423 5625 1.492993 GGTTGTTCTCCAGGCTCCCT 61.493 60.000 0.00 0.00 0.00 4.20
5467 5670 3.225940 CCCTTGAAGCTTTTTCTCCTGT 58.774 45.455 0.00 0.00 0.00 4.00
5476 5679 2.543777 TTTTCTCCTGTCGGGTGAAG 57.456 50.000 13.55 0.00 44.91 3.02
5485 5688 1.202879 TGTCGGGTGAAGCTTTTCCAT 60.203 47.619 18.18 0.00 0.00 3.41
5524 5745 3.502123 TCCGTGGTGGAAGATTTTTCT 57.498 42.857 0.00 0.00 46.38 2.52
5536 5757 7.169813 GTGGAAGATTTTTCTTCATGTTGGTTC 59.830 37.037 15.43 0.00 45.76 3.62
5569 5790 4.208253 CACTTGCCGGTTGTAACATTTTTC 59.792 41.667 1.90 0.00 0.00 2.29
5570 5791 4.098807 ACTTGCCGGTTGTAACATTTTTCT 59.901 37.500 1.90 0.00 0.00 2.52
5571 5792 4.231718 TGCCGGTTGTAACATTTTTCTC 57.768 40.909 1.90 0.00 0.00 2.87
5585 5806 2.048444 TTTCTCCATGGATGCAGCTC 57.952 50.000 16.63 0.00 0.00 4.09
5671 5893 1.461127 CTCCAGCTTCGTTTTCTTCGG 59.539 52.381 0.00 0.00 0.00 4.30
5684 5906 1.674359 TCTTCGGTTGCAGCAAAAGA 58.326 45.000 10.11 12.71 0.00 2.52
5712 5934 4.771356 GCGTCGTGCCTCGTAGCA 62.771 66.667 0.00 0.00 41.46 3.49
5762 5984 7.533289 TTTTAGCTGGTTATAAAAAGCTGGT 57.467 32.000 23.82 11.20 45.33 4.00
5763 5985 7.533289 TTTAGCTGGTTATAAAAAGCTGGTT 57.467 32.000 23.82 8.50 45.33 3.67
5797 6019 3.056678 TCACCGATGCAGCAAAATTCATT 60.057 39.130 1.53 0.00 0.00 2.57
5822 6044 4.022676 CCGGTAGTAGCAAAACCAACAAAT 60.023 41.667 0.00 0.00 32.55 2.32
5854 6076 2.180131 AAAGGTCGTCCGTCGTCTCG 62.180 60.000 0.00 0.00 40.80 4.04
5877 6099 4.416620 CCGTGACTGTTTTGTAGCAAAAA 58.583 39.130 8.37 0.00 0.00 1.94
5904 6126 1.003718 GGTTGTAGCACCGAGGCTT 60.004 57.895 6.11 0.00 42.71 4.35
5921 6143 3.949031 TTGCCGGTTGTAGCAAAAC 57.051 47.368 1.90 0.00 45.51 2.43
5922 6144 1.103803 TTGCCGGTTGTAGCAAAACA 58.896 45.000 1.90 0.00 45.51 2.83
5925 6147 1.268352 GCCGGTTGTAGCAAAACATCA 59.732 47.619 1.90 0.00 0.00 3.07
5948 6170 3.113046 GGTTGTAACCTCGACGTCC 57.887 57.895 10.58 0.00 45.75 4.79
5949 6171 0.730494 GGTTGTAACCTCGACGTCCG 60.730 60.000 10.58 5.50 45.75 4.79
5950 6172 1.081242 TTGTAACCTCGACGTCCGC 60.081 57.895 10.58 0.00 38.37 5.54
5952 6174 3.803082 TAACCTCGACGTCCGCCG 61.803 66.667 10.58 0.00 44.03 6.46
5995 6218 1.805945 GTTGTAGCACCGAGGCTCG 60.806 63.158 29.16 29.16 44.54 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
155 233 1.674322 CCCCGCCGTGTCTTTGAAT 60.674 57.895 0.00 0.00 0.00 2.57
230 308 6.701841 GCTCGACCAATGATTACAAGAAGATA 59.298 38.462 0.00 0.00 0.00 1.98
346 425 0.179936 CCTCTCCTCTCAATGTGGCC 59.820 60.000 0.00 0.00 0.00 5.36
468 551 9.590451 CATACAAGGCATATGAATTTCAAAGTT 57.410 29.630 6.97 0.00 32.66 2.66
536 619 6.466885 TTTGGGAGAACGTATTTGGAAAAA 57.533 33.333 0.00 0.00 0.00 1.94
537 620 6.466885 TTTTGGGAGAACGTATTTGGAAAA 57.533 33.333 0.00 0.00 0.00 2.29
577 660 2.201732 GCTTCGTCCGATTGCATCTAA 58.798 47.619 9.30 0.00 0.00 2.10
592 675 4.371855 TCTGGATAGTGTTACTGCTTCG 57.628 45.455 0.00 0.00 0.00 3.79
643 726 0.654683 TTGCAACGCAAAATGTTGGC 59.345 45.000 0.00 0.00 45.96 4.52
664 748 3.322828 AGCTCAAAGATTTGTGTGGCAAT 59.677 39.130 5.29 0.00 39.18 3.56
794 892 2.256117 AGTTTGACAGGCTACGCTTT 57.744 45.000 0.00 0.00 0.00 3.51
795 893 1.873591 CAAGTTTGACAGGCTACGCTT 59.126 47.619 0.00 0.00 0.00 4.68
796 894 1.512926 CAAGTTTGACAGGCTACGCT 58.487 50.000 0.00 0.00 0.00 5.07
797 895 0.110192 GCAAGTTTGACAGGCTACGC 60.110 55.000 0.00 0.00 0.00 4.42
798 896 1.225855 TGCAAGTTTGACAGGCTACG 58.774 50.000 0.00 0.00 0.00 3.51
838 936 1.509703 AAGACGGAAACTTTCGCTCC 58.490 50.000 0.00 0.00 0.00 4.70
864 962 4.627900 GGAAACGGATTTCTCTTCTCTCAC 59.372 45.833 0.23 0.00 43.33 3.51
865 963 4.822026 GGAAACGGATTTCTCTTCTCTCA 58.178 43.478 0.23 0.00 43.33 3.27
929 1028 1.451067 CTCCAAGAAGAAGGCAGCAG 58.549 55.000 0.00 0.00 0.00 4.24
1030 1192 2.758327 TGGCGGTATCTGGCTCGT 60.758 61.111 3.98 0.00 0.00 4.18
1170 1344 2.043852 AGGAGGGCGATGTCGTCT 60.044 61.111 6.98 3.86 44.45 4.18
1253 1428 4.899239 CCAGATCGCCGCCAGACC 62.899 72.222 0.00 0.00 0.00 3.85
1256 1431 4.899239 GGACCAGATCGCCGCCAG 62.899 72.222 0.00 0.00 0.00 4.85
1335 1511 0.386113 GACGATTTCCCCGAGAGAGG 59.614 60.000 0.00 0.00 0.00 3.69
1342 1518 3.252484 GCGACGACGATTTCCCCG 61.252 66.667 12.29 0.00 42.66 5.73
1346 1522 1.419107 GAAGGGGCGACGACGATTTC 61.419 60.000 12.29 4.83 42.66 2.17
1348 1524 2.183555 GAAGGGGCGACGACGATT 59.816 61.111 12.29 0.00 42.66 3.34
1349 1525 2.754658 AGAAGGGGCGACGACGAT 60.755 61.111 12.29 0.00 42.66 3.73
1351 1527 4.052229 ACAGAAGGGGCGACGACG 62.052 66.667 2.12 2.12 42.93 5.12
1352 1528 2.432628 CACAGAAGGGGCGACGAC 60.433 66.667 0.00 0.00 0.00 4.34
1353 1529 3.691342 CCACAGAAGGGGCGACGA 61.691 66.667 0.00 0.00 0.00 4.20
1354 1530 2.521958 AATCCACAGAAGGGGCGACG 62.522 60.000 0.00 0.00 0.00 5.12
1355 1531 0.322546 AAATCCACAGAAGGGGCGAC 60.323 55.000 0.00 0.00 0.00 5.19
1356 1532 0.322456 CAAATCCACAGAAGGGGCGA 60.322 55.000 0.00 0.00 0.00 5.54
1357 1533 0.609131 ACAAATCCACAGAAGGGGCG 60.609 55.000 0.00 0.00 0.00 6.13
1358 1534 1.632589 AACAAATCCACAGAAGGGGC 58.367 50.000 0.00 0.00 0.00 5.80
1359 1535 2.299867 CCAAACAAATCCACAGAAGGGG 59.700 50.000 0.00 0.00 0.00 4.79
1360 1536 2.299867 CCCAAACAAATCCACAGAAGGG 59.700 50.000 0.00 0.00 0.00 3.95
1383 1559 1.290134 AATCCACAGAAGGTCCCTCC 58.710 55.000 0.00 0.00 0.00 4.30
1388 1564 4.394300 CAGATCACAAATCCACAGAAGGTC 59.606 45.833 0.00 0.00 0.00 3.85
1389 1565 4.330250 CAGATCACAAATCCACAGAAGGT 58.670 43.478 0.00 0.00 0.00 3.50
1453 1629 1.203001 TGCAGGAACCAAAACCCTAGG 60.203 52.381 0.06 0.06 0.00 3.02
1454 1630 1.886542 GTGCAGGAACCAAAACCCTAG 59.113 52.381 0.00 0.00 0.00 3.02
1473 1649 1.913762 CGACCAGGTTCCCCAGAGT 60.914 63.158 0.00 0.00 0.00 3.24
1494 1670 2.293399 GCAAACGAATCCACAAGAAGGT 59.707 45.455 0.00 0.00 0.00 3.50
1501 1677 0.953471 CCTCCGCAAACGAATCCACA 60.953 55.000 0.00 0.00 43.93 4.17
1531 1708 1.310904 GTAAAACAACCACAGGGCGA 58.689 50.000 0.00 0.00 37.90 5.54
1532 1709 1.001815 CTGTAAAACAACCACAGGGCG 60.002 52.381 0.00 0.00 36.79 6.13
1540 1717 7.094933 CCCACATACTAGAACTGTAAAACAACC 60.095 40.741 0.00 0.00 0.00 3.77
1542 1719 7.737869 TCCCACATACTAGAACTGTAAAACAA 58.262 34.615 0.00 0.00 0.00 2.83
1548 1725 4.344102 GCCATCCCACATACTAGAACTGTA 59.656 45.833 0.00 0.00 0.00 2.74
1549 1726 3.134804 GCCATCCCACATACTAGAACTGT 59.865 47.826 0.00 0.00 0.00 3.55
1556 1733 1.140052 CAACCGCCATCCCACATACTA 59.860 52.381 0.00 0.00 0.00 1.82
1557 1734 0.107214 CAACCGCCATCCCACATACT 60.107 55.000 0.00 0.00 0.00 2.12
1558 1735 0.107410 TCAACCGCCATCCCACATAC 60.107 55.000 0.00 0.00 0.00 2.39
1572 1749 0.107165 AAGCCCTAGCGGAATCAACC 60.107 55.000 1.75 0.00 46.67 3.77
1582 1759 2.189499 CCCGCATCAAAGCCCTAGC 61.189 63.158 0.00 0.00 40.32 3.42
1632 1809 2.254546 TTCTGCCGCAGAAAAAGAGA 57.745 45.000 29.39 8.81 45.84 3.10
1648 1825 0.596082 CGCCCAAACAACCGAATTCT 59.404 50.000 3.52 0.00 0.00 2.40
1654 1831 1.234615 ACATCTCGCCCAAACAACCG 61.235 55.000 0.00 0.00 0.00 4.44
1657 1834 0.109532 TCCACATCTCGCCCAAACAA 59.890 50.000 0.00 0.00 0.00 2.83
1663 1840 2.512515 GCACTCCACATCTCGCCC 60.513 66.667 0.00 0.00 0.00 6.13
1817 1994 2.486548 GCCAAGTCCTTACTCACCACAA 60.487 50.000 0.00 0.00 33.75 3.33
1838 2015 7.646314 AGAGAGATGAACAAACAAACAGATTG 58.354 34.615 0.00 0.00 44.95 2.67
1877 2054 5.471797 TCTCTATCTAGCTCAGGAACGAATG 59.528 44.000 0.00 0.00 0.00 2.67
1881 2058 3.500680 GGTCTCTATCTAGCTCAGGAACG 59.499 52.174 0.00 0.00 0.00 3.95
1982 2159 8.445275 ACTAGACACACTATCTTCAGTAGATG 57.555 38.462 0.00 0.00 43.52 2.90
2019 2196 9.975218 ATACACCTTAAATTCTGAACCACTTAT 57.025 29.630 0.00 0.00 0.00 1.73
2051 2228 5.001237 TGAGTCTGTCAAAACGAACAGTA 57.999 39.130 0.00 0.00 29.64 2.74
2109 2288 1.228033 TGCAAGCAAGAGCAGCAGA 60.228 52.632 0.00 0.00 45.09 4.26
2162 2341 4.481930 TGTTCATGAAACCGCTAAACAG 57.518 40.909 10.35 0.00 37.03 3.16
2208 2388 5.147330 AGCTGCACAGTTGTATGTAAGTA 57.853 39.130 1.02 0.00 0.00 2.24
2213 2393 4.633126 CAGATAAGCTGCACAGTTGTATGT 59.367 41.667 1.02 0.00 37.90 2.29
2269 2449 2.834638 AATGGGTCAGGCAAGCTAAT 57.165 45.000 0.00 0.00 0.00 1.73
2630 2812 0.919710 ATAAGGAGGCTGGTGGGAAC 59.080 55.000 0.00 0.00 0.00 3.62
2713 2896 1.686428 CCGACTCTCATCCCTTCCTCA 60.686 57.143 0.00 0.00 0.00 3.86
2846 3029 8.361169 TCCTACATGTATAGTATATGCTGCAA 57.639 34.615 6.36 0.00 31.32 4.08
2902 3087 6.285990 GTCCACTCCTCAGTTTACAAAGTTA 58.714 40.000 0.00 0.00 0.00 2.24
2969 3154 5.546499 ACTCATAGACTAGGGGAACAAACAA 59.454 40.000 0.00 0.00 0.00 2.83
2970 3155 5.091552 ACTCATAGACTAGGGGAACAAACA 58.908 41.667 0.00 0.00 0.00 2.83
2986 3171 6.938596 TGCCTTTCAATCCATGATACTCATAG 59.061 38.462 0.00 0.00 38.03 2.23
3046 3231 4.900652 AGGAGATGATGACAAGATACTGCT 59.099 41.667 0.00 0.00 0.00 4.24
3240 3435 4.692625 ACAGTGAGAATGATAGTGTGCAAC 59.307 41.667 0.00 0.00 37.35 4.17
3715 3911 4.615961 CCAACGTACTTCTGAACTAGTTCG 59.384 45.833 26.35 20.98 42.28 3.95
3719 3915 5.117355 TCACCAACGTACTTCTGAACTAG 57.883 43.478 0.00 0.00 0.00 2.57
3986 4182 3.602491 CGATTTCAAGCATAGTACGCTGC 60.602 47.826 13.00 13.00 40.35 5.25
4103 4299 1.200716 GCATCATGCCATATTGGACCG 59.799 52.381 0.00 0.00 40.96 4.79
4130 4326 4.836825 ACAAGTAGGATGTCCAGAATGTG 58.163 43.478 1.30 0.00 38.89 3.21
4196 4394 6.307155 CGTGAAGAGTTTTAAATAGCACAGG 58.693 40.000 0.00 0.00 0.00 4.00
4202 4400 6.721571 TGAGGCGTGAAGAGTTTTAAATAG 57.278 37.500 0.00 0.00 0.00 1.73
4218 4416 5.105797 TGCAATTAATTTCTGATTGAGGCGT 60.106 36.000 0.00 0.00 33.67 5.68
4221 4419 6.570692 AGCTGCAATTAATTTCTGATTGAGG 58.429 36.000 1.02 0.00 33.67 3.86
4296 4494 4.074970 AGTGTATCAGGCCTGAAAAACAG 58.925 43.478 38.02 7.94 43.58 3.16
4298 4496 4.518970 TCAAGTGTATCAGGCCTGAAAAAC 59.481 41.667 38.02 31.53 43.58 2.43
4302 4500 3.118261 GGATCAAGTGTATCAGGCCTGAA 60.118 47.826 38.02 23.74 43.58 3.02
4303 4501 2.435805 GGATCAAGTGTATCAGGCCTGA 59.564 50.000 36.73 36.73 44.59 3.86
4367 4565 0.108138 CTTCCAAGTCAGGTAGCCCG 60.108 60.000 0.00 0.00 35.12 6.13
4550 4750 3.914312 TCGAATTGTTCAGAGACTGGAC 58.086 45.455 3.51 3.51 40.21 4.02
4556 4756 3.444034 AGTCGGATCGAATTGTTCAGAGA 59.556 43.478 0.00 0.00 37.72 3.10
4569 4769 3.906014 ACATATCAGACAGTCGGATCG 57.094 47.619 18.31 13.53 33.49 3.69
4586 4786 0.951558 GTCGGCACCTGAAACAACAT 59.048 50.000 0.00 0.00 0.00 2.71
4599 4799 1.591703 GACACTCCTGATGTCGGCA 59.408 57.895 0.00 0.00 37.34 5.69
4629 4829 2.625906 CGGATTGCGTACATGCCG 59.374 61.111 0.00 0.00 36.79 5.69
4653 4853 4.061596 CCTTCTCTGTCACAGTTTTCCTC 58.938 47.826 4.28 0.00 32.61 3.71
4659 4859 3.070302 GGAAGTCCTTCTCTGTCACAGTT 59.930 47.826 4.28 0.00 39.45 3.16
4677 4877 3.312828 CTTGTTGACTGAGTCGAGGAAG 58.687 50.000 8.23 7.49 34.95 3.46
4689 4889 3.397955 ACCCCTTTATCACCTTGTTGACT 59.602 43.478 0.00 0.00 0.00 3.41
4701 4901 7.255277 GCACTGAATTTCTGATACCCCTTTATC 60.255 40.741 9.92 0.00 0.00 1.75
4704 4904 4.706962 GCACTGAATTTCTGATACCCCTTT 59.293 41.667 9.92 0.00 0.00 3.11
4713 4913 2.238521 GGGGTTGCACTGAATTTCTGA 58.761 47.619 9.92 0.00 0.00 3.27
4725 4925 0.322098 CCATGTACTTCGGGGTTGCA 60.322 55.000 0.00 0.00 0.00 4.08
4769 4969 3.365264 GCAAACATGCACAGAATCGAAGA 60.365 43.478 0.00 0.00 36.14 2.87
4770 4970 2.912967 GCAAACATGCACAGAATCGAAG 59.087 45.455 0.00 0.00 34.41 3.79
4773 4973 2.334971 TGCAAACATGCACAGAATCG 57.665 45.000 0.00 0.00 40.23 3.34
4844 5044 4.669965 CGATGTGCTGTTTACAACCATCAG 60.670 45.833 12.54 0.00 0.00 2.90
4864 5064 0.320374 ACATGAACCGACACACCGAT 59.680 50.000 0.00 0.00 0.00 4.18
4865 5065 0.960286 TACATGAACCGACACACCGA 59.040 50.000 0.00 0.00 0.00 4.69
4866 5066 1.658596 CATACATGAACCGACACACCG 59.341 52.381 0.00 0.00 0.00 4.94
4872 5072 3.585862 ACAGTGACATACATGAACCGAC 58.414 45.455 0.00 0.00 0.00 4.79
4930 5130 8.419076 AAAATTGTGTTTCGACAAAGCTTTAT 57.581 26.923 12.25 0.00 39.25 1.40
4939 5139 4.630894 AGCTGAAAATTGTGTTTCGACA 57.369 36.364 0.00 0.00 39.85 4.35
5003 5203 7.541122 ACAAAGTTCTAACAAGAGACACTTC 57.459 36.000 0.00 0.00 36.61 3.01
5042 5242 0.937304 CGGAGCCGAACAACCATATG 59.063 55.000 2.00 0.00 42.83 1.78
5043 5243 0.539986 ACGGAGCCGAACAACCATAT 59.460 50.000 16.83 0.00 42.83 1.78
5044 5244 0.322322 AACGGAGCCGAACAACCATA 59.678 50.000 16.83 0.00 42.83 2.74
5045 5245 1.072505 AACGGAGCCGAACAACCAT 59.927 52.632 16.83 0.00 42.83 3.55
5046 5246 1.890041 CAACGGAGCCGAACAACCA 60.890 57.895 16.83 0.00 42.83 3.67
5048 5248 1.566018 CCTCAACGGAGCCGAACAAC 61.566 60.000 16.83 0.00 42.83 3.32
5049 5249 1.301401 CCTCAACGGAGCCGAACAA 60.301 57.895 16.83 0.00 42.83 2.83
5050 5250 2.342279 CCTCAACGGAGCCGAACA 59.658 61.111 16.83 0.00 42.83 3.18
5051 5251 3.119096 GCCTCAACGGAGCCGAAC 61.119 66.667 16.83 0.00 42.83 3.95
5052 5252 3.589654 CTGCCTCAACGGAGCCGAA 62.590 63.158 16.83 0.00 42.83 4.30
5053 5253 4.069232 CTGCCTCAACGGAGCCGA 62.069 66.667 16.83 0.00 42.83 5.54
5055 5255 4.785453 CCCTGCCTCAACGGAGCC 62.785 72.222 0.00 0.00 39.96 4.70
5056 5256 3.706373 TCCCTGCCTCAACGGAGC 61.706 66.667 0.00 0.00 39.96 4.70
5057 5257 2.266055 GTCCCTGCCTCAACGGAG 59.734 66.667 0.00 0.00 41.02 4.63
5058 5258 3.691342 CGTCCCTGCCTCAACGGA 61.691 66.667 0.00 0.00 33.16 4.69
5059 5259 3.019003 ATCGTCCCTGCCTCAACGG 62.019 63.158 0.00 0.00 35.89 4.44
5060 5260 1.811266 CATCGTCCCTGCCTCAACG 60.811 63.158 0.00 0.00 36.50 4.10
5061 5261 0.179000 ATCATCGTCCCTGCCTCAAC 59.821 55.000 0.00 0.00 0.00 3.18
5062 5262 0.178767 CATCATCGTCCCTGCCTCAA 59.821 55.000 0.00 0.00 0.00 3.02
5063 5263 0.687427 TCATCATCGTCCCTGCCTCA 60.687 55.000 0.00 0.00 0.00 3.86
5064 5264 0.249657 GTCATCATCGTCCCTGCCTC 60.250 60.000 0.00 0.00 0.00 4.70
5065 5265 1.826024 GTCATCATCGTCCCTGCCT 59.174 57.895 0.00 0.00 0.00 4.75
5066 5266 1.592669 CGTCATCATCGTCCCTGCC 60.593 63.158 0.00 0.00 0.00 4.85
5067 5267 1.592669 CCGTCATCATCGTCCCTGC 60.593 63.158 0.00 0.00 0.00 4.85
5068 5268 1.592669 GCCGTCATCATCGTCCCTG 60.593 63.158 0.00 0.00 0.00 4.45
5069 5269 2.058001 TGCCGTCATCATCGTCCCT 61.058 57.895 0.00 0.00 0.00 4.20
5070 5270 1.883084 GTGCCGTCATCATCGTCCC 60.883 63.158 0.00 0.00 0.00 4.46
5071 5271 2.230940 CGTGCCGTCATCATCGTCC 61.231 63.158 0.00 0.00 0.00 4.79
5072 5272 2.860628 GCGTGCCGTCATCATCGTC 61.861 63.158 0.00 0.00 0.00 4.20
5073 5273 2.885644 GCGTGCCGTCATCATCGT 60.886 61.111 0.00 0.00 0.00 3.73
5074 5274 2.580470 GAGCGTGCCGTCATCATCG 61.580 63.158 0.00 0.00 0.00 3.84
5075 5275 2.240500 GGAGCGTGCCGTCATCATC 61.241 63.158 0.00 0.00 0.00 2.92
5076 5276 2.202932 GGAGCGTGCCGTCATCAT 60.203 61.111 0.00 0.00 0.00 2.45
5077 5277 3.647649 CTGGAGCGTGCCGTCATCA 62.648 63.158 0.00 0.00 0.00 3.07
5078 5278 2.887568 CTGGAGCGTGCCGTCATC 60.888 66.667 0.00 0.00 0.00 2.92
5079 5279 3.695606 ACTGGAGCGTGCCGTCAT 61.696 61.111 0.00 0.00 0.00 3.06
5080 5280 4.662961 CACTGGAGCGTGCCGTCA 62.663 66.667 0.00 0.00 0.00 4.35
5086 5286 0.882042 ACTGAAAGCACTGGAGCGTG 60.882 55.000 0.00 0.00 37.60 5.34
5087 5287 0.601311 GACTGAAAGCACTGGAGCGT 60.601 55.000 0.00 0.00 37.60 5.07
5088 5288 1.621301 CGACTGAAAGCACTGGAGCG 61.621 60.000 0.00 0.00 37.60 5.03
5089 5289 0.601311 ACGACTGAAAGCACTGGAGC 60.601 55.000 0.00 0.00 37.60 4.70
5090 5290 1.423395 GACGACTGAAAGCACTGGAG 58.577 55.000 0.00 0.00 37.60 3.86
5091 5291 0.318699 CGACGACTGAAAGCACTGGA 60.319 55.000 0.00 0.00 37.60 3.86
5092 5292 0.597637 ACGACGACTGAAAGCACTGG 60.598 55.000 0.00 0.00 37.60 4.00
5093 5293 1.071239 CAACGACGACTGAAAGCACTG 60.071 52.381 0.00 0.00 37.60 3.66
5094 5294 1.209128 CAACGACGACTGAAAGCACT 58.791 50.000 0.00 0.00 37.60 4.40
5095 5295 0.232303 CCAACGACGACTGAAAGCAC 59.768 55.000 0.00 0.00 37.60 4.40
5096 5296 0.103390 TCCAACGACGACTGAAAGCA 59.897 50.000 0.00 0.00 37.60 3.91
5097 5297 1.429463 ATCCAACGACGACTGAAAGC 58.571 50.000 0.00 0.00 37.60 3.51
5098 5298 2.157668 CCAATCCAACGACGACTGAAAG 59.842 50.000 0.00 0.00 42.29 2.62
5099 5299 2.139917 CCAATCCAACGACGACTGAAA 58.860 47.619 0.00 0.00 0.00 2.69
5100 5300 1.606994 CCCAATCCAACGACGACTGAA 60.607 52.381 0.00 0.00 0.00 3.02
5101 5301 0.037697 CCCAATCCAACGACGACTGA 60.038 55.000 0.00 0.00 0.00 3.41
5102 5302 0.320421 ACCCAATCCAACGACGACTG 60.320 55.000 0.00 0.00 0.00 3.51
5103 5303 0.320421 CACCCAATCCAACGACGACT 60.320 55.000 0.00 0.00 0.00 4.18
5104 5304 1.296056 CCACCCAATCCAACGACGAC 61.296 60.000 0.00 0.00 0.00 4.34
5105 5305 1.004320 CCACCCAATCCAACGACGA 60.004 57.895 0.00 0.00 0.00 4.20
5106 5306 1.296056 GACCACCCAATCCAACGACG 61.296 60.000 0.00 0.00 0.00 5.12
5107 5307 0.958876 GGACCACCCAATCCAACGAC 60.959 60.000 0.00 0.00 34.87 4.34
5108 5308 1.377229 GGACCACCCAATCCAACGA 59.623 57.895 0.00 0.00 34.87 3.85
5109 5309 1.074072 TGGACCACCCAATCCAACG 59.926 57.895 0.00 0.00 42.14 4.10
5118 5318 3.016736 CAACTATGTTCATGGACCACCC 58.983 50.000 0.46 0.00 34.81 4.61
5119 5319 2.423538 GCAACTATGTTCATGGACCACC 59.576 50.000 0.46 0.00 0.00 4.61
5120 5320 3.081061 TGCAACTATGTTCATGGACCAC 58.919 45.455 0.46 0.00 0.00 4.16
5121 5321 3.431673 TGCAACTATGTTCATGGACCA 57.568 42.857 0.46 0.00 0.00 4.02
5122 5322 4.989279 ATTGCAACTATGTTCATGGACC 57.011 40.909 0.00 0.00 0.00 4.46
5123 5323 7.171337 ACAAAAATTGCAACTATGTTCATGGAC 59.829 33.333 0.00 0.00 0.00 4.02
5124 5324 7.215789 ACAAAAATTGCAACTATGTTCATGGA 58.784 30.769 0.00 0.00 0.00 3.41
5125 5325 7.424227 ACAAAAATTGCAACTATGTTCATGG 57.576 32.000 0.00 0.00 0.00 3.66
5130 5330 9.651913 CCCTAATACAAAAATTGCAACTATGTT 57.348 29.630 0.00 0.00 0.00 2.71
5131 5331 7.763985 GCCCTAATACAAAAATTGCAACTATGT 59.236 33.333 0.00 7.72 0.00 2.29
5132 5332 7.763528 TGCCCTAATACAAAAATTGCAACTATG 59.236 33.333 0.00 1.29 0.00 2.23
5133 5333 7.846066 TGCCCTAATACAAAAATTGCAACTAT 58.154 30.769 0.00 0.00 0.00 2.12
5134 5334 7.039363 ACTGCCCTAATACAAAAATTGCAACTA 60.039 33.333 0.00 0.00 0.00 2.24
5135 5335 6.107901 TGCCCTAATACAAAAATTGCAACT 57.892 33.333 0.00 0.00 0.00 3.16
5136 5336 5.931724 ACTGCCCTAATACAAAAATTGCAAC 59.068 36.000 0.00 0.00 0.00 4.17
5137 5337 5.931146 CACTGCCCTAATACAAAAATTGCAA 59.069 36.000 0.00 0.00 0.00 4.08
5138 5338 5.244851 TCACTGCCCTAATACAAAAATTGCA 59.755 36.000 0.00 0.00 0.00 4.08
5139 5339 5.719173 TCACTGCCCTAATACAAAAATTGC 58.281 37.500 0.00 0.00 0.00 3.56
5140 5340 7.703621 CAGATCACTGCCCTAATACAAAAATTG 59.296 37.037 0.00 0.00 37.33 2.32
5141 5341 7.775120 CAGATCACTGCCCTAATACAAAAATT 58.225 34.615 0.00 0.00 37.33 1.82
5142 5342 7.338800 CAGATCACTGCCCTAATACAAAAAT 57.661 36.000 0.00 0.00 37.33 1.82
5143 5343 6.757897 CAGATCACTGCCCTAATACAAAAA 57.242 37.500 0.00 0.00 37.33 1.94
5157 5357 3.190849 CACCGGCGCAGATCACTG 61.191 66.667 10.83 0.00 45.91 3.66
5158 5358 3.695606 ACACCGGCGCAGATCACT 61.696 61.111 10.83 0.00 0.00 3.41
5159 5359 3.490759 CACACCGGCGCAGATCAC 61.491 66.667 10.83 0.00 0.00 3.06
5160 5360 3.932580 GACACACCGGCGCAGATCA 62.933 63.158 10.83 0.00 0.00 2.92
5161 5361 3.188786 GACACACCGGCGCAGATC 61.189 66.667 10.83 0.00 0.00 2.75
5175 5375 4.728102 ATTCGCGTTCGGCCGACA 62.728 61.111 31.19 16.76 38.94 4.35
5176 5376 3.910104 GATTCGCGTTCGGCCGAC 61.910 66.667 31.19 21.48 38.94 4.79
5189 5389 3.252484 CGACCGGCCGAACGATTC 61.252 66.667 30.73 11.44 35.47 2.52
5190 5390 4.807039 CCGACCGGCCGAACGATT 62.807 66.667 32.87 11.27 35.47 3.34
5206 5406 4.148825 ATCCGACGGTGAGCAGCC 62.149 66.667 14.79 0.00 0.00 4.85
5207 5407 2.583593 GATCCGACGGTGAGCAGC 60.584 66.667 14.79 0.00 0.00 5.25
5208 5408 2.278206 CGATCCGACGGTGAGCAG 60.278 66.667 14.79 0.00 0.00 4.24
5209 5409 4.492160 GCGATCCGACGGTGAGCA 62.492 66.667 14.79 0.00 0.00 4.26
5210 5410 3.701604 AAGCGATCCGACGGTGAGC 62.702 63.158 14.79 16.54 43.02 4.26
5211 5411 1.153823 AAAGCGATCCGACGGTGAG 60.154 57.895 14.79 7.29 43.02 3.51
5212 5412 1.445410 CAAAGCGATCCGACGGTGA 60.445 57.895 14.79 0.00 43.02 4.02
5213 5413 3.081133 CAAAGCGATCCGACGGTG 58.919 61.111 14.79 6.48 43.02 4.94
5214 5414 2.813908 GCAAAGCGATCCGACGGT 60.814 61.111 14.79 0.67 45.67 4.83
5215 5415 3.564027 GGCAAAGCGATCCGACGG 61.564 66.667 7.84 7.84 0.00 4.79
5216 5416 3.564027 GGGCAAAGCGATCCGACG 61.564 66.667 0.00 0.00 0.00 5.12
5217 5417 1.819632 ATGGGCAAAGCGATCCGAC 60.820 57.895 0.00 0.00 0.00 4.79
5218 5418 1.819208 CATGGGCAAAGCGATCCGA 60.819 57.895 0.00 0.00 0.00 4.55
5219 5419 2.717485 CATGGGCAAAGCGATCCG 59.283 61.111 0.00 0.00 0.00 4.18
5220 5420 3.122850 CCATGGGCAAAGCGATCC 58.877 61.111 2.85 0.00 0.00 3.36
5231 5431 1.961277 GCGATCTAACGGCCATGGG 60.961 63.158 15.13 0.00 0.00 4.00
5232 5432 2.310233 CGCGATCTAACGGCCATGG 61.310 63.158 7.63 7.63 0.00 3.66
5233 5433 2.943345 GCGCGATCTAACGGCCATG 61.943 63.158 12.10 0.00 0.00 3.66
5234 5434 2.661866 GCGCGATCTAACGGCCAT 60.662 61.111 12.10 0.00 0.00 4.40
5238 5438 1.949631 GAAGGGCGCGATCTAACGG 60.950 63.158 12.10 0.00 0.00 4.44
5239 5439 1.065928 AGAAGGGCGCGATCTAACG 59.934 57.895 12.10 0.00 0.00 3.18
5240 5440 0.179108 ACAGAAGGGCGCGATCTAAC 60.179 55.000 12.10 4.37 0.00 2.34
5241 5441 0.102481 GACAGAAGGGCGCGATCTAA 59.898 55.000 12.10 0.00 0.00 2.10
5242 5442 1.734137 GACAGAAGGGCGCGATCTA 59.266 57.895 12.10 0.00 0.00 1.98
5243 5443 2.496817 GACAGAAGGGCGCGATCT 59.503 61.111 12.10 2.30 0.00 2.75
5244 5444 2.586357 GGACAGAAGGGCGCGATC 60.586 66.667 12.10 0.00 0.00 3.69
5245 5445 4.162690 GGGACAGAAGGGCGCGAT 62.163 66.667 12.10 0.00 0.00 4.58
5250 5450 4.097361 GACGGGGGACAGAAGGGC 62.097 72.222 0.00 0.00 0.00 5.19
5251 5451 3.400054 GGACGGGGGACAGAAGGG 61.400 72.222 0.00 0.00 0.00 3.95
5252 5452 2.284699 AGGACGGGGGACAGAAGG 60.285 66.667 0.00 0.00 0.00 3.46
5253 5453 2.711922 CGAGGACGGGGGACAGAAG 61.712 68.421 0.00 0.00 35.72 2.85
5254 5454 2.678934 CGAGGACGGGGGACAGAA 60.679 66.667 0.00 0.00 35.72 3.02
5255 5455 3.975591 ACGAGGACGGGGGACAGA 61.976 66.667 0.00 0.00 44.46 3.41
5256 5456 3.760035 CACGAGGACGGGGGACAG 61.760 72.222 0.00 0.00 44.46 3.51
5264 5464 3.358076 GAAGGGAGCCACGAGGACG 62.358 68.421 1.86 0.00 45.75 4.79
5265 5465 1.617947 ATGAAGGGAGCCACGAGGAC 61.618 60.000 1.86 0.00 36.89 3.85
5266 5466 1.306141 ATGAAGGGAGCCACGAGGA 60.306 57.895 1.86 0.00 36.89 3.71
5267 5467 1.144936 GATGAAGGGAGCCACGAGG 59.855 63.158 0.00 0.00 38.23 4.63
5268 5468 1.144936 GGATGAAGGGAGCCACGAG 59.855 63.158 0.00 0.00 0.00 4.18
5269 5469 2.367202 GGGATGAAGGGAGCCACGA 61.367 63.158 0.00 0.00 0.00 4.35
5270 5470 2.190578 GGGATGAAGGGAGCCACG 59.809 66.667 0.00 0.00 0.00 4.94
5271 5471 2.597903 GGGGATGAAGGGAGCCAC 59.402 66.667 0.00 0.00 0.00 5.01
5272 5472 3.089874 CGGGGATGAAGGGAGCCA 61.090 66.667 0.00 0.00 0.00 4.75
5273 5473 3.090532 ACGGGGATGAAGGGAGCC 61.091 66.667 0.00 0.00 0.00 4.70
5274 5474 2.190578 CACGGGGATGAAGGGAGC 59.809 66.667 0.00 0.00 0.00 4.70
5275 5475 2.911143 CCACGGGGATGAAGGGAG 59.089 66.667 0.00 0.00 35.59 4.30
5276 5476 3.407967 GCCACGGGGATGAAGGGA 61.408 66.667 8.67 0.00 35.59 4.20
5277 5477 4.856801 CGCCACGGGGATGAAGGG 62.857 72.222 8.67 0.00 35.59 3.95
5279 5479 4.473520 AGCGCCACGGGGATGAAG 62.474 66.667 8.67 0.00 35.59 3.02
5280 5480 4.776322 CAGCGCCACGGGGATGAA 62.776 66.667 8.67 0.00 45.30 2.57
5283 5483 4.778143 GAACAGCGCCACGGGGAT 62.778 66.667 8.67 0.00 35.59 3.85
5289 5489 4.374702 CAGCACGAACAGCGCCAC 62.375 66.667 2.29 0.00 46.04 5.01
5309 5509 1.973281 AAAGCGTCCATGGCAGGTG 60.973 57.895 6.96 0.00 0.00 4.00
5310 5510 1.973281 CAAAGCGTCCATGGCAGGT 60.973 57.895 6.96 5.99 0.00 4.00
5311 5511 1.651240 CTCAAAGCGTCCATGGCAGG 61.651 60.000 6.96 3.25 0.00 4.85
5312 5512 1.651240 CCTCAAAGCGTCCATGGCAG 61.651 60.000 6.96 4.23 0.00 4.85
5313 5513 1.675310 CCTCAAAGCGTCCATGGCA 60.675 57.895 6.96 0.00 0.00 4.92
5314 5514 3.056313 GCCTCAAAGCGTCCATGGC 62.056 63.158 6.96 0.96 0.00 4.40
5315 5515 0.962356 AAGCCTCAAAGCGTCCATGG 60.962 55.000 4.97 4.97 38.01 3.66
5316 5516 0.169672 CAAGCCTCAAAGCGTCCATG 59.830 55.000 0.00 0.00 38.01 3.66
5317 5517 0.036732 TCAAGCCTCAAAGCGTCCAT 59.963 50.000 0.00 0.00 38.01 3.41
5318 5518 0.884704 GTCAAGCCTCAAAGCGTCCA 60.885 55.000 0.00 0.00 38.01 4.02
5319 5519 1.578206 GGTCAAGCCTCAAAGCGTCC 61.578 60.000 0.00 0.00 38.01 4.79
5320 5520 0.603975 AGGTCAAGCCTCAAAGCGTC 60.604 55.000 0.00 0.00 46.96 5.19
5321 5521 1.451936 AGGTCAAGCCTCAAAGCGT 59.548 52.632 0.00 0.00 46.96 5.07
5322 5522 4.386413 AGGTCAAGCCTCAAAGCG 57.614 55.556 0.00 0.00 46.96 4.68
5330 5530 1.246056 TGATGCTGCAAGGTCAAGCC 61.246 55.000 6.36 0.00 37.58 4.35
5331 5531 0.109412 GTGATGCTGCAAGGTCAAGC 60.109 55.000 6.36 0.00 0.00 4.01
5332 5532 0.524862 GGTGATGCTGCAAGGTCAAG 59.475 55.000 6.36 0.00 0.00 3.02
5333 5533 0.178995 TGGTGATGCTGCAAGGTCAA 60.179 50.000 6.36 0.00 0.00 3.18
5334 5534 0.607217 CTGGTGATGCTGCAAGGTCA 60.607 55.000 6.36 2.96 0.00 4.02
5335 5535 1.930908 GCTGGTGATGCTGCAAGGTC 61.931 60.000 6.36 0.00 0.00 3.85
5336 5536 1.975407 GCTGGTGATGCTGCAAGGT 60.975 57.895 6.36 0.00 0.00 3.50
5337 5537 1.248785 AAGCTGGTGATGCTGCAAGG 61.249 55.000 6.36 0.00 41.03 3.61
5338 5538 0.109272 CAAGCTGGTGATGCTGCAAG 60.109 55.000 6.36 0.00 41.03 4.01
5339 5539 1.961378 CAAGCTGGTGATGCTGCAA 59.039 52.632 6.36 0.00 41.03 4.08
5340 5540 2.632544 GCAAGCTGGTGATGCTGCA 61.633 57.895 4.13 4.13 41.03 4.41
5341 5541 2.181021 GCAAGCTGGTGATGCTGC 59.819 61.111 0.00 0.00 41.03 5.25
5342 5542 2.882876 GGCAAGCTGGTGATGCTG 59.117 61.111 7.24 0.00 41.03 4.41
5343 5543 2.749044 CGGCAAGCTGGTGATGCT 60.749 61.111 7.24 0.00 43.32 3.79
5344 5544 4.487412 GCGGCAAGCTGGTGATGC 62.487 66.667 2.69 0.00 44.04 3.91
5388 5588 3.822192 CCGATGGCGACGAGGACA 61.822 66.667 0.00 0.00 40.82 4.02
5399 5599 1.026718 GCCTGGAGAACAACCGATGG 61.027 60.000 0.00 0.00 0.00 3.51
5402 5602 1.671742 GAGCCTGGAGAACAACCGA 59.328 57.895 0.00 0.00 0.00 4.69
5403 5603 1.376037 GGAGCCTGGAGAACAACCG 60.376 63.158 0.00 0.00 0.00 4.44
5415 5615 0.480252 AAAGCTTCAACAGGGAGCCT 59.520 50.000 0.00 0.00 0.00 4.58
5447 5650 3.058639 CGACAGGAGAAAAAGCTTCAAGG 60.059 47.826 0.00 0.00 0.00 3.61
5467 5670 1.885887 CAATGGAAAAGCTTCACCCGA 59.114 47.619 15.97 2.97 32.75 5.14
5476 5679 2.147436 TCAAACGGCAATGGAAAAGC 57.853 45.000 0.00 0.00 0.00 3.51
5508 5729 6.462768 CCAACATGAAGAAAAATCTTCCACCA 60.463 38.462 14.18 0.00 43.94 4.17
5517 5738 5.163322 TGCTGGAACCAACATGAAGAAAAAT 60.163 36.000 0.00 0.00 0.00 1.82
5524 5745 4.187694 GTTTTTGCTGGAACCAACATGAA 58.812 39.130 0.00 0.00 0.00 2.57
5570 5791 2.315781 GACGGAGCTGCATCCATGGA 62.316 60.000 18.88 18.88 39.53 3.41
5571 5792 1.890979 GACGGAGCTGCATCCATGG 60.891 63.158 4.97 4.97 39.53 3.66
5642 5863 1.519719 GAAGCTGGAGCCGATGACT 59.480 57.895 0.00 0.00 43.38 3.41
5643 5864 1.880340 CGAAGCTGGAGCCGATGAC 60.880 63.158 0.00 0.00 43.38 3.06
5644 5865 1.888436 AACGAAGCTGGAGCCGATGA 61.888 55.000 4.59 0.00 43.38 2.92
5645 5866 1.021390 AAACGAAGCTGGAGCCGATG 61.021 55.000 4.59 0.00 43.38 3.84
5646 5867 0.321653 AAAACGAAGCTGGAGCCGAT 60.322 50.000 4.59 0.00 43.38 4.18
5647 5868 0.949105 GAAAACGAAGCTGGAGCCGA 60.949 55.000 4.59 0.00 43.38 5.54
5654 5876 2.639751 CAACCGAAGAAAACGAAGCTG 58.360 47.619 0.00 0.00 0.00 4.24
5750 5972 1.737793 CGGCGAGAACCAGCTTTTTAT 59.262 47.619 0.00 0.00 0.00 1.40
5751 5973 1.153353 CGGCGAGAACCAGCTTTTTA 58.847 50.000 0.00 0.00 0.00 1.52
5752 5974 1.515521 CCGGCGAGAACCAGCTTTTT 61.516 55.000 9.30 0.00 0.00 1.94
5753 5975 1.966451 CCGGCGAGAACCAGCTTTT 60.966 57.895 9.30 0.00 0.00 2.27
5754 5976 2.358737 CCGGCGAGAACCAGCTTT 60.359 61.111 9.30 0.00 0.00 3.51
5755 5977 4.394712 CCCGGCGAGAACCAGCTT 62.395 66.667 9.30 0.00 0.00 3.74
5758 5980 3.934391 GACACCCGGCGAGAACCAG 62.934 68.421 9.30 0.00 0.00 4.00
5759 5981 3.998672 GACACCCGGCGAGAACCA 61.999 66.667 9.30 0.00 0.00 3.67
5760 5982 3.998672 TGACACCCGGCGAGAACC 61.999 66.667 9.30 0.00 0.00 3.62
5761 5983 2.737376 GTGACACCCGGCGAGAAC 60.737 66.667 9.30 0.00 0.00 3.01
5762 5984 3.998672 GGTGACACCCGGCGAGAA 61.999 66.667 14.16 0.00 30.04 2.87
5797 6019 0.397187 TGGTTTTGCTACTACCGGCA 59.603 50.000 0.00 0.00 34.62 5.69
5854 6076 0.941542 TGCTACAAAACAGTCACGGC 59.058 50.000 0.00 0.00 0.00 5.68
5877 6099 4.212716 TCGGTGCTACAACCTATATCTGT 58.787 43.478 0.00 0.00 38.14 3.41
5884 6106 0.613853 AGCCTCGGTGCTACAACCTA 60.614 55.000 0.00 0.00 40.56 3.08
5904 6126 1.268352 GATGTTTTGCTACAACCGGCA 59.732 47.619 0.00 0.00 36.62 5.69
5909 6131 4.236935 CCATGGTGATGTTTTGCTACAAC 58.763 43.478 2.57 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.