Multiple sequence alignment - TraesCS6D01G326300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G326300 chr6D 100.000 8656 0 0 1 8656 431451669 431460324 0.000000e+00 15985
1 TraesCS6D01G326300 chr6D 90.871 241 22 0 3718 3958 122521274 122521034 3.010000e-84 324
2 TraesCS6D01G326300 chr6D 90.323 248 23 1 3715 3961 458329636 458329883 3.010000e-84 324
3 TraesCS6D01G326300 chrUn 95.956 4229 103 21 4019 8202 74544769 74548974 0.000000e+00 6800
4 TraesCS6D01G326300 chrUn 96.474 2297 62 14 1432 3719 74542260 74544546 0.000000e+00 3775
5 TraesCS6D01G326300 chrUn 92.857 1442 60 9 1 1415 74540681 74542106 0.000000e+00 2052
6 TraesCS6D01G326300 chrUn 89.516 372 12 15 8307 8656 74549100 74549466 6.170000e-121 446
7 TraesCS6D01G326300 chrUn 90.299 134 2 6 8235 8364 74548974 74549100 1.930000e-36 165
8 TraesCS6D01G326300 chrUn 100.000 64 0 0 3957 4020 74544545 74544608 1.530000e-22 119
9 TraesCS6D01G326300 chr6B 94.070 2479 103 23 1 2448 651407347 651409812 0.000000e+00 3723
10 TraesCS6D01G326300 chr6B 96.247 1812 54 6 5684 7484 651412728 651414536 0.000000e+00 2957
11 TraesCS6D01G326300 chr6B 96.661 1737 42 12 3957 5685 651410906 651412634 0.000000e+00 2872
12 TraesCS6D01G326300 chr6B 96.378 1049 26 4 2682 3719 651409860 651410907 0.000000e+00 1716
13 TraesCS6D01G326300 chr6B 88.466 867 50 20 7490 8339 651414619 651415452 0.000000e+00 1002
14 TraesCS6D01G326300 chr6B 88.122 362 19 14 8307 8656 651415463 651415812 8.090000e-110 409
15 TraesCS6D01G326300 chr6B 90.535 243 21 2 3718 3959 708059141 708059382 3.900000e-83 320
16 TraesCS6D01G326300 chr1B 89.384 584 52 3 2 585 465828678 465828105 0.000000e+00 726
17 TraesCS6D01G326300 chr1A 79.003 662 105 19 2757 3411 560362338 560361704 1.040000e-113 422
18 TraesCS6D01G326300 chr1D 78.645 679 111 19 2754 3425 371669803 371670454 3.740000e-113 420
19 TraesCS6D01G326300 chr1D 90.588 255 20 3 3718 3971 3763961 3763710 1.390000e-87 335
20 TraesCS6D01G326300 chr1D 89.919 248 24 1 3708 3955 6543816 6543570 1.400000e-82 318
21 TraesCS6D01G326300 chr5D 79.561 592 87 25 2827 3411 433882134 433881570 8.150000e-105 392
22 TraesCS6D01G326300 chr3A 78.595 598 101 21 4263 4846 511673275 511672691 3.820000e-98 370
23 TraesCS6D01G326300 chr3A 84.936 312 40 4 5254 5559 511613674 511613364 8.440000e-80 309
24 TraesCS6D01G326300 chr3A 84.000 175 14 6 6431 6594 511607468 511607297 1.160000e-33 156
25 TraesCS6D01G326300 chr5B 90.458 262 24 1 203 464 395284571 395284311 2.310000e-90 344
26 TraesCS6D01G326300 chr5B 90.000 250 24 1 3711 3959 598436699 598436450 1.080000e-83 322
27 TraesCS6D01G326300 chr5B 91.870 123 2 2 460 582 395266594 395266480 1.930000e-36 165
28 TraesCS6D01G326300 chr7B 90.625 256 21 3 3707 3959 680201902 680202157 3.870000e-88 337
29 TraesCS6D01G326300 chr7B 87.037 108 12 2 8517 8623 63567088 63567194 4.240000e-23 121
30 TraesCS6D01G326300 chr4B 90.763 249 22 1 3711 3958 613086691 613086443 1.800000e-86 331
31 TraesCS6D01G326300 chr7D 78.531 531 81 18 2901 3425 553504512 553504009 1.400000e-82 318
32 TraesCS6D01G326300 chr7D 83.453 139 15 7 8491 8623 104900321 104900457 1.180000e-23 122
33 TraesCS6D01G326300 chr4D 87.778 270 29 4 3710 3979 20299920 20300185 6.520000e-81 313
34 TraesCS6D01G326300 chr4D 73.814 527 84 25 2915 3408 438379553 438380058 8.990000e-35 159
35 TraesCS6D01G326300 chr2D 76.332 638 100 29 2757 3388 188539818 188539226 2.360000e-75 294
36 TraesCS6D01G326300 chr3B 80.571 175 26 4 845 1018 420405577 420405410 2.540000e-25 128
37 TraesCS6D01G326300 chr7A 87.963 108 11 2 8517 8623 109355585 109355691 9.120000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G326300 chr6D 431451669 431460324 8655 False 15985.000000 15985 100.000000 1 8656 1 chr6D.!!$F1 8655
1 TraesCS6D01G326300 chrUn 74540681 74549466 8785 False 2226.166667 6800 94.183667 1 8656 6 chrUn.!!$F1 8655
2 TraesCS6D01G326300 chr6B 651407347 651415812 8465 False 2113.166667 3723 93.324000 1 8656 6 chr6B.!!$F2 8655
3 TraesCS6D01G326300 chr1B 465828105 465828678 573 True 726.000000 726 89.384000 2 585 1 chr1B.!!$R1 583
4 TraesCS6D01G326300 chr1A 560361704 560362338 634 True 422.000000 422 79.003000 2757 3411 1 chr1A.!!$R1 654
5 TraesCS6D01G326300 chr1D 371669803 371670454 651 False 420.000000 420 78.645000 2754 3425 1 chr1D.!!$F1 671
6 TraesCS6D01G326300 chr5D 433881570 433882134 564 True 392.000000 392 79.561000 2827 3411 1 chr5D.!!$R1 584
7 TraesCS6D01G326300 chr3A 511672691 511673275 584 True 370.000000 370 78.595000 4263 4846 1 chr3A.!!$R3 583
8 TraesCS6D01G326300 chr7D 553504009 553504512 503 True 318.000000 318 78.531000 2901 3425 1 chr7D.!!$R1 524
9 TraesCS6D01G326300 chr2D 188539226 188539818 592 True 294.000000 294 76.332000 2757 3388 1 chr2D.!!$R1 631

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 100 0.169672 TCTTCATTCCCGTCGACGTC 59.830 55.000 33.49 5.18 37.74 4.34 F
524 532 0.608640 CGGTAGTCAAGGGCTCAAGT 59.391 55.000 0.00 0.00 0.00 3.16 F
945 975 1.080354 TGGGAGTGACCTACCCCAG 59.920 63.158 0.00 0.00 41.63 4.45 F
1218 1248 2.065993 TCTCTTTGCTGTGCGTAGTC 57.934 50.000 0.00 0.00 0.00 2.59 F
2174 2350 2.180086 TCCTATGAGACTACTGGCCCAT 59.820 50.000 0.00 0.00 0.00 4.00 F
3675 3870 1.069703 CACAACACCAAGATGCGACTG 60.070 52.381 0.00 0.00 0.00 3.51 F
3769 3964 0.030235 GGTTTCCGCGCTTCAACTTT 59.970 50.000 5.56 0.00 0.00 2.66 F
3944 4139 0.040425 GTGGGCGCGCTATATTTTGG 60.040 55.000 32.29 0.00 0.00 3.28 F
3945 4140 0.179043 TGGGCGCGCTATATTTTGGA 60.179 50.000 32.29 0.00 0.00 3.53 F
3946 4141 0.948678 GGGCGCGCTATATTTTGGAA 59.051 50.000 32.29 0.00 0.00 3.53 F
3947 4142 1.334689 GGGCGCGCTATATTTTGGAAC 60.335 52.381 32.29 8.93 0.00 3.62 F
6091 6566 1.403780 CGTACCTGTGGCTTGGTAGAC 60.404 57.143 4.58 0.00 39.22 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1177 1207 0.867746 TGTGTGAGAAAGACGCATGC 59.132 50.000 7.91 7.91 0.00 4.06 R
1703 1878 1.065491 TCCAACCAATCGATCAGTGGG 60.065 52.381 16.95 14.89 36.69 4.61 R
2294 2471 1.134907 GCATTCTGCAACCCCAATCAG 60.135 52.381 0.00 0.00 44.26 2.90 R
2486 2664 1.993956 AGCCAATGCACAACAACCTA 58.006 45.000 0.00 0.00 41.13 3.08 R
3750 3945 0.030235 AAAGTTGAAGCGCGGAAACC 59.970 50.000 8.83 0.00 0.00 3.27 R
5181 5557 0.974010 CAAAGCCAGGCACATCCCAT 60.974 55.000 15.80 0.00 34.51 4.00 R
5548 5925 4.285775 TGTTTTTCCCCTGGGATCATTTTC 59.714 41.667 16.20 0.00 44.74 2.29 R
5935 6410 2.224426 TGAAAGAGCTAAAAGGCGGACA 60.224 45.455 0.00 0.00 37.29 4.02 R
6041 6516 8.308931 CAACCAAAATGCTGATATAATGGCTAT 58.691 33.333 0.00 0.00 0.00 2.97 R
6291 6766 8.161699 ACACTGAAAAACATAAACCGTCTTAT 57.838 30.769 0.00 0.00 0.00 1.73 R
6311 6786 7.930513 TTAGATGCTTCGAATATGTACACTG 57.069 36.000 0.00 0.00 0.00 3.66 R
8210 8792 0.110192 GCAAGTTTGACAGGCTACGC 60.110 55.000 0.00 0.00 0.00 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 100 0.169672 TCTTCATTCCCGTCGACGTC 59.830 55.000 33.49 5.18 37.74 4.34
163 164 2.941081 GCATCTGCTCGATCTGCGC 61.941 63.158 0.00 0.00 40.61 6.09
196 197 0.669318 TCAGGTTGATTCGTGGCGAC 60.669 55.000 0.00 0.00 34.89 5.19
197 198 1.375523 AGGTTGATTCGTGGCGACC 60.376 57.895 0.00 0.00 38.59 4.79
379 384 3.015327 TCCTCCTTTCGTACTAGCTGTC 58.985 50.000 0.00 0.00 0.00 3.51
487 492 5.014228 GGCCCCTGATATATCCAAGTAAACT 59.986 44.000 10.25 0.00 0.00 2.66
517 525 4.638865 CCCTTTATTTTCGGTAGTCAAGGG 59.361 45.833 0.00 0.00 42.53 3.95
518 526 4.095932 CCTTTATTTTCGGTAGTCAAGGGC 59.904 45.833 0.00 0.00 0.00 5.19
519 527 4.563140 TTATTTTCGGTAGTCAAGGGCT 57.437 40.909 0.00 0.00 0.00 5.19
520 528 2.467566 TTTTCGGTAGTCAAGGGCTC 57.532 50.000 0.00 0.00 0.00 4.70
521 529 1.344065 TTTCGGTAGTCAAGGGCTCA 58.656 50.000 0.00 0.00 0.00 4.26
522 530 1.344065 TTCGGTAGTCAAGGGCTCAA 58.656 50.000 0.00 0.00 0.00 3.02
523 531 0.895530 TCGGTAGTCAAGGGCTCAAG 59.104 55.000 0.00 0.00 0.00 3.02
524 532 0.608640 CGGTAGTCAAGGGCTCAAGT 59.391 55.000 0.00 0.00 0.00 3.16
869 899 2.426738 TGTGCCTGACCTTTTGAACTTG 59.573 45.455 0.00 0.00 0.00 3.16
881 911 3.591196 TTGAACTTGCTGCTTGTGTTT 57.409 38.095 0.00 0.00 0.00 2.83
939 969 2.461300 CAGGATCTGGGAGTGACCTA 57.539 55.000 0.00 0.00 38.98 3.08
945 975 1.080354 TGGGAGTGACCTACCCCAG 59.920 63.158 0.00 0.00 41.63 4.45
1053 1083 3.612860 CGTATCAGGAGAAACCAAGAACG 59.387 47.826 0.00 0.00 42.04 3.95
1138 1168 3.070590 ACCTTTTACACACCGAGCTTAGT 59.929 43.478 0.00 0.00 0.00 2.24
1170 1200 6.465084 AGGAGTATCAGTTTAGTTCGCTTTT 58.535 36.000 0.00 0.00 36.25 2.27
1182 1212 4.168760 AGTTCGCTTTTATCTTTGCATGC 58.831 39.130 11.82 11.82 0.00 4.06
1192 1222 2.493035 TCTTTGCATGCGTCTTTCTCA 58.507 42.857 14.09 0.00 0.00 3.27
1198 1228 2.138320 CATGCGTCTTTCTCACACACT 58.862 47.619 0.00 0.00 0.00 3.55
1200 1230 2.201732 TGCGTCTTTCTCACACACTTC 58.798 47.619 0.00 0.00 0.00 3.01
1202 1232 2.473235 GCGTCTTTCTCACACACTTCTC 59.527 50.000 0.00 0.00 0.00 2.87
1218 1248 2.065993 TCTCTTTGCTGTGCGTAGTC 57.934 50.000 0.00 0.00 0.00 2.59
1261 1293 7.346960 AGGTGATAGCTCTTTCTCCTTAATCTT 59.653 37.037 0.00 0.00 33.02 2.40
1400 1436 2.827322 ACATACCACACAATGCTGCATT 59.173 40.909 21.48 21.48 34.04 3.56
1508 1683 5.181245 TCTGTTTATTGCTGCTTGTAACTCC 59.819 40.000 0.00 0.00 0.00 3.85
1510 1685 5.300539 TGTTTATTGCTGCTTGTAACTCCAA 59.699 36.000 0.00 0.00 0.00 3.53
1511 1686 3.923017 ATTGCTGCTTGTAACTCCAAC 57.077 42.857 0.00 0.00 0.00 3.77
1512 1687 2.638480 TGCTGCTTGTAACTCCAACT 57.362 45.000 0.00 0.00 0.00 3.16
1513 1688 2.221169 TGCTGCTTGTAACTCCAACTG 58.779 47.619 0.00 0.00 0.00 3.16
1585 1760 3.058293 TGCTGCTTGTTTATTTGTCTCGG 60.058 43.478 0.00 0.00 0.00 4.63
1627 1802 2.436417 TGATTCAACCCAAGTAGCTGC 58.564 47.619 0.00 0.00 0.00 5.25
2018 2193 4.389890 TGAAAATGCTTGTGTTCAGCTT 57.610 36.364 0.00 0.00 0.00 3.74
2035 2210 3.070734 CAGCTTGTGGAGGATATAGCAGT 59.929 47.826 0.00 0.00 0.00 4.40
2174 2350 2.180086 TCCTATGAGACTACTGGCCCAT 59.820 50.000 0.00 0.00 0.00 4.00
2294 2471 9.139174 ACAGTGTAAAATGCTATTTTTATGTGC 57.861 29.630 0.00 0.00 34.54 4.57
2351 2528 5.220739 GCATGTGTCACTTTATGGAAGCTAG 60.221 44.000 4.27 0.00 39.04 3.42
2363 2540 4.890158 TGGAAGCTAGACAGTTCAATGA 57.110 40.909 0.00 0.00 0.00 2.57
2432 2609 4.077300 TCACACAATCTAGCATGATCCC 57.923 45.455 0.00 0.00 0.00 3.85
2460 2638 4.887655 CAGGAGGTTATTATGGGTTGGAAC 59.112 45.833 0.00 0.00 0.00 3.62
2480 2658 8.306313 TGGAACTAAGTCATACACTCATACAT 57.694 34.615 0.00 0.00 32.30 2.29
2510 2688 4.526262 AGGTTGTTGTGCATTGGCTTTATA 59.474 37.500 0.00 0.00 41.91 0.98
2587 2765 7.368059 TCTACACTGTTATGTTGTGACTACTG 58.632 38.462 0.00 0.00 35.83 2.74
2589 2767 5.983720 ACACTGTTATGTTGTGACTACTGAC 59.016 40.000 0.00 0.00 35.83 3.51
2590 2768 6.183360 ACACTGTTATGTTGTGACTACTGACT 60.183 38.462 0.00 0.00 35.83 3.41
2591 2769 7.013942 ACACTGTTATGTTGTGACTACTGACTA 59.986 37.037 0.00 0.00 35.83 2.59
2592 2770 7.865889 CACTGTTATGTTGTGACTACTGACTAA 59.134 37.037 0.00 0.00 33.95 2.24
2593 2771 8.585881 ACTGTTATGTTGTGACTACTGACTAAT 58.414 33.333 0.00 0.00 0.00 1.73
2594 2772 8.757164 TGTTATGTTGTGACTACTGACTAATG 57.243 34.615 0.00 0.00 0.00 1.90
2596 2774 9.204570 GTTATGTTGTGACTACTGACTAATGTT 57.795 33.333 0.00 0.00 0.00 2.71
2597 2775 7.658179 ATGTTGTGACTACTGACTAATGTTG 57.342 36.000 0.00 0.00 0.00 3.33
2598 2776 5.465390 TGTTGTGACTACTGACTAATGTTGC 59.535 40.000 0.00 0.00 0.00 4.17
2599 2777 5.468540 TGTGACTACTGACTAATGTTGCT 57.531 39.130 0.00 0.00 0.00 3.91
2602 2780 5.517054 GTGACTACTGACTAATGTTGCTAGC 59.483 44.000 8.10 8.10 0.00 3.42
2616 2794 4.750098 TGTTGCTAGCAAGTGTAAGTTCTC 59.250 41.667 29.99 13.91 36.52 2.87
2627 2805 7.817962 GCAAGTGTAAGTTCTCCTCTGTAAATA 59.182 37.037 0.00 0.00 0.00 1.40
2702 2880 2.599677 ACGTTGCCCCTTTTGGAAATA 58.400 42.857 0.00 0.00 44.07 1.40
2920 3100 8.616076 CCTTTTCATTTATCTCTTTCGCACTAT 58.384 33.333 0.00 0.00 0.00 2.12
2969 3149 5.875359 CCTAGGAAGGTGATTTTGTACTGTC 59.125 44.000 1.05 0.00 38.19 3.51
2996 3176 8.974060 TTATGAAATCTTAGTTGTACCCATCC 57.026 34.615 0.00 0.00 0.00 3.51
3467 3659 3.152261 AGAACTCTACTCGAATTGCCG 57.848 47.619 0.00 0.00 0.00 5.69
3583 3775 7.792374 TCATAAATGACAATTCTGTAGGAGC 57.208 36.000 0.00 0.00 35.30 4.70
3675 3870 1.069703 CACAACACCAAGATGCGACTG 60.070 52.381 0.00 0.00 0.00 3.51
3727 3922 9.828039 ATTAAGTAAAAATAACTACTCCCTCCG 57.172 33.333 0.00 0.00 0.00 4.63
3728 3923 6.864151 AGTAAAAATAACTACTCCCTCCGT 57.136 37.500 0.00 0.00 0.00 4.69
3729 3924 7.250032 AGTAAAAATAACTACTCCCTCCGTT 57.750 36.000 0.00 0.00 0.00 4.44
3730 3925 7.326454 AGTAAAAATAACTACTCCCTCCGTTC 58.674 38.462 0.00 0.00 0.00 3.95
3731 3926 4.750021 AAATAACTACTCCCTCCGTTCC 57.250 45.455 0.00 0.00 0.00 3.62
3732 3927 2.905415 TAACTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
3733 3928 2.019807 AACTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
3734 3929 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
3735 3930 1.900486 ACTACTCCCTCCGTTCCAAAG 59.100 52.381 0.00 0.00 0.00 2.77
3736 3931 1.900486 CTACTCCCTCCGTTCCAAAGT 59.100 52.381 0.00 0.00 0.00 2.66
3737 3932 2.019807 ACTCCCTCCGTTCCAAAGTA 57.980 50.000 0.00 0.00 0.00 2.24
3738 3933 2.547990 ACTCCCTCCGTTCCAAAGTAT 58.452 47.619 0.00 0.00 0.00 2.12
3739 3934 3.716431 ACTCCCTCCGTTCCAAAGTATA 58.284 45.455 0.00 0.00 0.00 1.47
3740 3935 3.705072 ACTCCCTCCGTTCCAAAGTATAG 59.295 47.826 0.00 0.00 0.00 1.31
3741 3936 3.705072 CTCCCTCCGTTCCAAAGTATAGT 59.295 47.826 0.00 0.00 0.00 2.12
3742 3937 3.449737 TCCCTCCGTTCCAAAGTATAGTG 59.550 47.826 0.00 0.00 0.00 2.74
3743 3938 3.195661 CCTCCGTTCCAAAGTATAGTGC 58.804 50.000 0.00 0.00 0.00 4.40
3744 3939 2.858344 CTCCGTTCCAAAGTATAGTGCG 59.142 50.000 0.00 0.00 0.00 5.34
3745 3940 2.231964 TCCGTTCCAAAGTATAGTGCGT 59.768 45.455 0.00 0.00 0.00 5.24
3746 3941 2.601763 CCGTTCCAAAGTATAGTGCGTC 59.398 50.000 0.00 0.00 0.00 5.19
3747 3942 2.601763 CGTTCCAAAGTATAGTGCGTCC 59.398 50.000 0.00 0.00 0.00 4.79
3748 3943 3.675228 CGTTCCAAAGTATAGTGCGTCCT 60.675 47.826 0.00 0.00 0.00 3.85
3749 3944 3.795623 TCCAAAGTATAGTGCGTCCTC 57.204 47.619 0.00 0.00 0.00 3.71
3750 3945 2.098607 TCCAAAGTATAGTGCGTCCTCG 59.901 50.000 0.00 0.00 40.37 4.63
3751 3946 2.460918 CAAAGTATAGTGCGTCCTCGG 58.539 52.381 0.00 0.00 37.56 4.63
3752 3947 1.760192 AAGTATAGTGCGTCCTCGGT 58.240 50.000 0.00 0.00 37.56 4.69
3753 3948 1.760192 AGTATAGTGCGTCCTCGGTT 58.240 50.000 0.00 0.00 37.56 4.44
3754 3949 2.097825 AGTATAGTGCGTCCTCGGTTT 58.902 47.619 0.00 0.00 37.56 3.27
3755 3950 2.098770 AGTATAGTGCGTCCTCGGTTTC 59.901 50.000 0.00 0.00 37.56 2.78
3756 3951 0.175073 ATAGTGCGTCCTCGGTTTCC 59.825 55.000 0.00 0.00 37.56 3.13
3766 3961 2.127383 CGGTTTCCGCGCTTCAAC 60.127 61.111 5.56 4.83 41.17 3.18
3767 3962 2.604174 CGGTTTCCGCGCTTCAACT 61.604 57.895 5.56 0.00 41.17 3.16
3768 3963 1.652563 GGTTTCCGCGCTTCAACTT 59.347 52.632 5.56 0.00 0.00 2.66
3769 3964 0.030235 GGTTTCCGCGCTTCAACTTT 59.970 50.000 5.56 0.00 0.00 2.66
3770 3965 1.120437 GTTTCCGCGCTTCAACTTTG 58.880 50.000 5.56 0.00 0.00 2.77
3771 3966 1.018148 TTTCCGCGCTTCAACTTTGA 58.982 45.000 5.56 0.00 34.92 2.69
3772 3967 0.306533 TTCCGCGCTTCAACTTTGAC 59.693 50.000 5.56 0.00 36.83 3.18
3773 3968 1.082104 CCGCGCTTCAACTTTGACC 60.082 57.895 5.56 0.00 36.83 4.02
3774 3969 1.646540 CGCGCTTCAACTTTGACCA 59.353 52.632 5.56 0.00 36.83 4.02
3775 3970 0.238289 CGCGCTTCAACTTTGACCAT 59.762 50.000 5.56 0.00 36.83 3.55
3776 3971 1.463056 CGCGCTTCAACTTTGACCATA 59.537 47.619 5.56 0.00 36.83 2.74
3777 3972 2.095969 CGCGCTTCAACTTTGACCATAA 60.096 45.455 5.56 0.00 36.83 1.90
3778 3973 3.608241 CGCGCTTCAACTTTGACCATAAA 60.608 43.478 5.56 0.00 36.83 1.40
3779 3974 4.485163 GCGCTTCAACTTTGACCATAAAT 58.515 39.130 0.00 0.00 36.83 1.40
3780 3975 4.923281 GCGCTTCAACTTTGACCATAAATT 59.077 37.500 0.00 0.00 36.83 1.82
3781 3976 5.405269 GCGCTTCAACTTTGACCATAAATTT 59.595 36.000 0.00 0.00 36.83 1.82
3782 3977 6.584563 GCGCTTCAACTTTGACCATAAATTTA 59.415 34.615 0.00 0.00 36.83 1.40
3783 3978 7.115663 GCGCTTCAACTTTGACCATAAATTTAA 59.884 33.333 0.00 0.00 36.83 1.52
3784 3979 8.424731 CGCTTCAACTTTGACCATAAATTTAAC 58.575 33.333 1.21 0.00 36.83 2.01
3785 3980 8.708742 GCTTCAACTTTGACCATAAATTTAACC 58.291 33.333 1.21 0.00 36.83 2.85
3786 3981 9.757227 CTTCAACTTTGACCATAAATTTAACCA 57.243 29.630 1.21 0.00 36.83 3.67
3788 3983 9.535878 TCAACTTTGACCATAAATTTAACCAAC 57.464 29.630 1.21 0.00 31.01 3.77
3789 3984 8.484008 CAACTTTGACCATAAATTTAACCAACG 58.516 33.333 1.21 5.06 0.00 4.10
3790 3985 7.942990 ACTTTGACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
3791 3986 8.079809 ACTTTGACCATAAATTTAACCAACGAG 58.920 33.333 1.21 3.35 0.00 4.18
3792 3987 7.747155 TTGACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
3793 3988 7.136289 TGACCATAAATTTAACCAACGAGAC 57.864 36.000 1.21 0.00 0.00 3.36
3794 3989 6.149807 TGACCATAAATTTAACCAACGAGACC 59.850 38.462 1.21 0.00 0.00 3.85
3795 3990 6.005198 ACCATAAATTTAACCAACGAGACCA 58.995 36.000 1.21 0.00 0.00 4.02
3796 3991 6.490721 ACCATAAATTTAACCAACGAGACCAA 59.509 34.615 1.21 0.00 0.00 3.67
3797 3992 6.804783 CCATAAATTTAACCAACGAGACCAAC 59.195 38.462 1.21 0.00 0.00 3.77
3798 3993 7.308951 CCATAAATTTAACCAACGAGACCAACT 60.309 37.037 1.21 0.00 0.00 3.16
3799 3994 5.432885 AATTTAACCAACGAGACCAACTG 57.567 39.130 0.00 0.00 0.00 3.16
3800 3995 1.873698 TAACCAACGAGACCAACTGC 58.126 50.000 0.00 0.00 0.00 4.40
3801 3996 1.157870 AACCAACGAGACCAACTGCG 61.158 55.000 0.00 0.00 0.00 5.18
3802 3997 2.317609 CCAACGAGACCAACTGCGG 61.318 63.158 0.00 0.00 0.00 5.69
3803 3998 2.665185 AACGAGACCAACTGCGGC 60.665 61.111 0.00 0.00 0.00 6.53
3862 4057 8.665643 TGAATACGAATTCACCGGTATAATTT 57.334 30.769 21.62 13.10 45.17 1.82
3863 4058 9.111613 TGAATACGAATTCACCGGTATAATTTT 57.888 29.630 21.62 14.64 45.17 1.82
3864 4059 9.940166 GAATACGAATTCACCGGTATAATTTTT 57.060 29.630 21.62 15.78 41.09 1.94
3865 4060 9.724839 AATACGAATTCACCGGTATAATTTTTG 57.275 29.630 21.62 17.51 0.00 2.44
3866 4061 6.031471 ACGAATTCACCGGTATAATTTTTGC 58.969 36.000 21.62 11.97 0.00 3.68
3867 4062 6.127842 ACGAATTCACCGGTATAATTTTTGCT 60.128 34.615 21.62 5.28 0.00 3.91
3868 4063 6.750039 CGAATTCACCGGTATAATTTTTGCTT 59.250 34.615 21.62 5.34 0.00 3.91
3869 4064 7.044314 CGAATTCACCGGTATAATTTTTGCTTC 60.044 37.037 21.62 11.39 0.00 3.86
3870 4065 5.570234 TCACCGGTATAATTTTTGCTTCC 57.430 39.130 6.87 0.00 0.00 3.46
3871 4066 4.095185 TCACCGGTATAATTTTTGCTTCCG 59.905 41.667 6.87 0.00 37.04 4.30
3872 4067 3.181494 ACCGGTATAATTTTTGCTTCCGC 60.181 43.478 4.49 0.00 36.15 5.54
3873 4068 3.066203 CCGGTATAATTTTTGCTTCCGCT 59.934 43.478 0.00 0.00 36.15 5.52
3874 4069 4.035017 CGGTATAATTTTTGCTTCCGCTG 58.965 43.478 0.00 0.00 36.97 5.18
3875 4070 3.796717 GGTATAATTTTTGCTTCCGCTGC 59.203 43.478 0.00 0.00 36.97 5.25
3876 4071 3.591196 ATAATTTTTGCTTCCGCTGCA 57.409 38.095 0.00 0.00 38.80 4.41
3877 4072 1.787012 AATTTTTGCTTCCGCTGCAG 58.213 45.000 10.11 10.11 41.71 4.41
3878 4073 0.675633 ATTTTTGCTTCCGCTGCAGT 59.324 45.000 16.64 0.00 41.71 4.40
3879 4074 0.459489 TTTTTGCTTCCGCTGCAGTT 59.541 45.000 16.64 0.00 41.71 3.16
3880 4075 0.248990 TTTTGCTTCCGCTGCAGTTG 60.249 50.000 16.64 8.37 41.71 3.16
3881 4076 2.074230 TTTGCTTCCGCTGCAGTTGG 62.074 55.000 16.64 17.43 41.71 3.77
3882 4077 2.980233 GCTTCCGCTGCAGTTGGT 60.980 61.111 21.66 0.00 0.00 3.67
3883 4078 2.970974 GCTTCCGCTGCAGTTGGTC 61.971 63.158 21.66 11.69 0.00 4.02
3884 4079 1.302033 CTTCCGCTGCAGTTGGTCT 60.302 57.895 21.66 0.00 0.00 3.85
3885 4080 1.294659 CTTCCGCTGCAGTTGGTCTC 61.295 60.000 21.66 1.67 0.00 3.36
3886 4081 2.031012 CCGCTGCAGTTGGTCTCA 59.969 61.111 16.64 0.00 0.00 3.27
3887 4082 1.376424 CCGCTGCAGTTGGTCTCAT 60.376 57.895 16.64 0.00 0.00 2.90
3888 4083 0.957395 CCGCTGCAGTTGGTCTCATT 60.957 55.000 16.64 0.00 0.00 2.57
3889 4084 0.167470 CGCTGCAGTTGGTCTCATTG 59.833 55.000 16.64 0.00 0.00 2.82
3890 4085 0.524862 GCTGCAGTTGGTCTCATTGG 59.475 55.000 16.64 0.00 0.00 3.16
3891 4086 1.901591 CTGCAGTTGGTCTCATTGGT 58.098 50.000 5.25 0.00 0.00 3.67
3892 4087 2.233271 CTGCAGTTGGTCTCATTGGTT 58.767 47.619 5.25 0.00 0.00 3.67
3893 4088 3.411446 CTGCAGTTGGTCTCATTGGTTA 58.589 45.455 5.25 0.00 0.00 2.85
3894 4089 3.820467 CTGCAGTTGGTCTCATTGGTTAA 59.180 43.478 5.25 0.00 0.00 2.01
3895 4090 4.211125 TGCAGTTGGTCTCATTGGTTAAA 58.789 39.130 0.00 0.00 0.00 1.52
3896 4091 4.832266 TGCAGTTGGTCTCATTGGTTAAAT 59.168 37.500 0.00 0.00 0.00 1.40
3897 4092 5.304101 TGCAGTTGGTCTCATTGGTTAAATT 59.696 36.000 0.00 0.00 0.00 1.82
3898 4093 6.183360 TGCAGTTGGTCTCATTGGTTAAATTT 60.183 34.615 0.00 0.00 0.00 1.82
3899 4094 7.014711 TGCAGTTGGTCTCATTGGTTAAATTTA 59.985 33.333 0.00 0.00 0.00 1.40
3900 4095 8.034804 GCAGTTGGTCTCATTGGTTAAATTTAT 58.965 33.333 0.00 0.00 0.00 1.40
3901 4096 9.357652 CAGTTGGTCTCATTGGTTAAATTTATG 57.642 33.333 0.00 0.00 0.00 1.90
3902 4097 8.531146 AGTTGGTCTCATTGGTTAAATTTATGG 58.469 33.333 0.00 0.00 0.00 2.74
3903 4098 8.311109 GTTGGTCTCATTGGTTAAATTTATGGT 58.689 33.333 0.00 0.00 0.00 3.55
3904 4099 8.062065 TGGTCTCATTGGTTAAATTTATGGTC 57.938 34.615 0.00 0.00 0.00 4.02
3905 4100 7.671819 TGGTCTCATTGGTTAAATTTATGGTCA 59.328 33.333 0.00 0.00 0.00 4.02
3906 4101 8.527810 GGTCTCATTGGTTAAATTTATGGTCAA 58.472 33.333 0.00 2.87 0.00 3.18
3907 4102 9.921637 GTCTCATTGGTTAAATTTATGGTCAAA 57.078 29.630 0.00 0.00 0.00 2.69
3909 4104 9.927668 CTCATTGGTTAAATTTATGGTCAAAGT 57.072 29.630 0.00 0.00 0.00 2.66
3914 4109 9.535878 TGGTTAAATTTATGGTCAAAGTTGAAC 57.464 29.630 1.98 1.98 45.04 3.18
3915 4110 8.984764 GGTTAAATTTATGGTCAAAGTTGAACC 58.015 33.333 6.62 6.25 44.20 3.62
3916 4111 9.758651 GTTAAATTTATGGTCAAAGTTGAACCT 57.241 29.630 6.62 0.00 44.20 3.50
3917 4112 9.974980 TTAAATTTATGGTCAAAGTTGAACCTC 57.025 29.630 6.62 0.00 44.20 3.85
3918 4113 5.682943 TTTATGGTCAAAGTTGAACCTCG 57.317 39.130 6.62 0.00 44.20 4.63
3919 4114 1.961793 TGGTCAAAGTTGAACCTCGG 58.038 50.000 6.62 0.00 44.20 4.63
3920 4115 1.235724 GGTCAAAGTTGAACCTCGGG 58.764 55.000 0.00 0.00 38.96 5.14
3921 4116 1.202722 GGTCAAAGTTGAACCTCGGGA 60.203 52.381 0.00 0.00 38.96 5.14
3922 4117 2.567985 GTCAAAGTTGAACCTCGGGAA 58.432 47.619 0.00 0.00 39.21 3.97
3923 4118 2.548480 GTCAAAGTTGAACCTCGGGAAG 59.452 50.000 0.00 0.00 39.21 3.46
3924 4119 1.266989 CAAAGTTGAACCTCGGGAAGC 59.733 52.381 0.00 0.00 0.00 3.86
3925 4120 0.602905 AAGTTGAACCTCGGGAAGCG 60.603 55.000 0.00 0.00 0.00 4.68
3926 4121 1.301479 GTTGAACCTCGGGAAGCGT 60.301 57.895 0.00 0.00 0.00 5.07
3927 4122 1.301401 TTGAACCTCGGGAAGCGTG 60.301 57.895 0.00 0.00 0.00 5.34
3928 4123 2.434359 GAACCTCGGGAAGCGTGG 60.434 66.667 0.00 0.00 0.00 4.94
3929 4124 3.952628 GAACCTCGGGAAGCGTGGG 62.953 68.421 0.00 0.00 0.00 4.61
3941 4136 3.637714 CGTGGGCGCGCTATATTT 58.362 55.556 32.29 0.00 0.00 1.40
3942 4137 1.938861 CGTGGGCGCGCTATATTTT 59.061 52.632 32.29 0.00 0.00 1.82
3943 4138 0.384230 CGTGGGCGCGCTATATTTTG 60.384 55.000 32.29 9.06 0.00 2.44
3944 4139 0.040425 GTGGGCGCGCTATATTTTGG 60.040 55.000 32.29 0.00 0.00 3.28
3945 4140 0.179043 TGGGCGCGCTATATTTTGGA 60.179 50.000 32.29 0.00 0.00 3.53
3946 4141 0.948678 GGGCGCGCTATATTTTGGAA 59.051 50.000 32.29 0.00 0.00 3.53
3947 4142 1.334689 GGGCGCGCTATATTTTGGAAC 60.335 52.381 32.29 8.93 0.00 3.62
3948 4143 1.658968 GCGCGCTATATTTTGGAACG 58.341 50.000 26.67 0.00 0.00 3.95
3949 4144 1.659211 GCGCGCTATATTTTGGAACGG 60.659 52.381 26.67 0.00 0.00 4.44
3950 4145 1.862201 CGCGCTATATTTTGGAACGGA 59.138 47.619 5.56 0.00 0.00 4.69
3951 4146 2.096909 CGCGCTATATTTTGGAACGGAG 60.097 50.000 5.56 0.00 0.00 4.63
3952 4147 2.223377 GCGCTATATTTTGGAACGGAGG 59.777 50.000 0.00 0.00 0.00 4.30
3953 4148 2.806244 CGCTATATTTTGGAACGGAGGG 59.194 50.000 0.00 0.00 0.00 4.30
3954 4149 3.493699 CGCTATATTTTGGAACGGAGGGA 60.494 47.826 0.00 0.00 0.00 4.20
3955 4150 4.065789 GCTATATTTTGGAACGGAGGGAG 58.934 47.826 0.00 0.00 0.00 4.30
4472 4837 2.754552 TCATTGCTGACTTGGTAATGGC 59.245 45.455 0.00 0.00 37.37 4.40
5033 5409 2.632028 AGATCTCTGATTGGGATGTCGG 59.368 50.000 0.00 0.00 0.00 4.79
5051 5427 4.177783 GTCGGGTGACATTGTTTTTGTTT 58.822 39.130 0.00 0.00 44.82 2.83
5052 5428 4.627900 GTCGGGTGACATTGTTTTTGTTTT 59.372 37.500 0.00 0.00 44.82 2.43
5117 5493 7.039011 TCCACAGGTAGTTGCTAATATGGATAG 60.039 40.741 0.00 0.00 0.00 2.08
5181 5557 2.506957 TTGGCTGACTCTCGGTGCA 61.507 57.895 0.00 0.00 0.00 4.57
5250 5627 1.535462 CGGGTCAACAATCCTTGTGAC 59.465 52.381 11.06 11.06 44.59 3.67
5597 5974 4.813296 ACACGATCTGAACAAAGGAAAC 57.187 40.909 0.00 0.00 0.00 2.78
5598 5975 4.196193 ACACGATCTGAACAAAGGAAACA 58.804 39.130 0.00 0.00 0.00 2.83
5599 5976 4.821805 ACACGATCTGAACAAAGGAAACAT 59.178 37.500 0.00 0.00 0.00 2.71
5602 5979 7.012894 ACACGATCTGAACAAAGGAAACATTTA 59.987 33.333 0.00 0.00 0.00 1.40
5603 5980 7.535258 CACGATCTGAACAAAGGAAACATTTAG 59.465 37.037 0.00 0.00 0.00 1.85
5640 6020 7.609918 CCGGTAATCATGACCAATCCATTATTA 59.390 37.037 0.00 0.00 36.72 0.98
5703 6178 9.221775 GTTAACTATAAACCAATTGAGCATTCG 57.778 33.333 7.12 0.00 0.00 3.34
6041 6516 7.448777 CAGCCTTACCAGTTCTAGTGATATCTA 59.551 40.741 3.98 0.00 0.00 1.98
6091 6566 1.403780 CGTACCTGTGGCTTGGTAGAC 60.404 57.143 4.58 0.00 39.22 2.59
6291 6766 4.443621 TCGAACACACATTTTACCTGTGA 58.556 39.130 10.17 0.00 45.44 3.58
6311 6786 7.749126 CCTGTGATAAGACGGTTTATGTTTTTC 59.251 37.037 0.00 0.00 0.00 2.29
6396 6871 9.498176 AATTAGTCGTGTTTATACCTGAGTTTT 57.502 29.630 0.00 0.00 0.00 2.43
6456 6939 2.368548 TCTGCAGCCTGAAAGTGTTAGA 59.631 45.455 9.47 0.00 0.00 2.10
6854 7337 3.785887 AGGCCTGGAATTATGGTGAGTAA 59.214 43.478 3.11 0.00 0.00 2.24
7213 7696 2.026729 GCCTCTCCTTGGAGCTAAAGTT 60.027 50.000 11.61 0.00 32.43 2.66
7442 7926 6.980978 TCTTGAACTGAGTTTCTACTGTTGAG 59.019 38.462 0.00 0.00 33.84 3.02
7568 8129 2.989639 CGCAGGGTTGGAGATCCA 59.010 61.111 0.00 0.00 45.94 3.41
7643 8204 2.532715 ACACTGGTCATGGCCCCT 60.533 61.111 15.27 0.00 0.00 4.79
7881 8447 5.665916 TGCTGTGACAGAGATTAGAATGA 57.334 39.130 18.18 0.00 32.44 2.57
7979 8545 6.183360 CCAAATACGTTCTCCCAAAATAGCAT 60.183 38.462 0.00 0.00 0.00 3.79
7990 8556 3.635373 CCAAAATAGCATGACCAGAGCAT 59.365 43.478 0.00 0.00 0.00 3.79
8202 8784 8.485591 GCAGTCATGAAATCAAAAAGAAAGAAG 58.514 33.333 0.00 0.00 0.00 2.85
8255 8837 5.977129 TCGAAAGAAGAATTTTTGTTGGAGC 59.023 36.000 0.00 0.00 37.03 4.70
8256 8838 5.108254 CGAAAGAAGAATTTTTGTTGGAGCG 60.108 40.000 0.00 0.00 0.00 5.03
8257 8839 5.514274 AAGAAGAATTTTTGTTGGAGCGA 57.486 34.783 0.00 0.00 0.00 4.93
8258 8840 5.514274 AGAAGAATTTTTGTTGGAGCGAA 57.486 34.783 0.00 0.00 0.00 4.70
8259 8841 5.901552 AGAAGAATTTTTGTTGGAGCGAAA 58.098 33.333 0.00 0.00 0.00 3.46
8363 8999 1.642952 GCTGCCTTCTTCTTGGAGCG 61.643 60.000 0.00 0.00 0.00 5.03
8364 9000 0.036952 CTGCCTTCTTCTTGGAGCGA 60.037 55.000 0.00 0.00 0.00 4.93
8443 9089 2.255554 GTCTCTCGCACACGCAGA 59.744 61.111 0.00 0.00 39.84 4.26
8453 9099 2.182791 CACGCAGACGAGCCAGAT 59.817 61.111 0.00 0.00 43.93 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 164 1.068753 CCTGATCTACCAGCGCCTG 59.931 63.158 2.29 1.18 32.97 4.85
216 217 1.069022 CAGTGCCAACGTCCAGAATTG 60.069 52.381 0.00 0.00 0.00 2.32
379 384 0.541863 AGGGAAACTAGCGACCATGG 59.458 55.000 11.19 11.19 0.00 3.66
487 492 9.517868 TGACTACCGAAAATAAAGGGAAATTTA 57.482 29.630 0.00 0.00 0.00 1.40
517 525 3.648339 TTTTGAATGCCAGACTTGAGC 57.352 42.857 0.00 0.00 0.00 4.26
518 526 5.048224 ACTCATTTTGAATGCCAGACTTGAG 60.048 40.000 0.00 0.00 34.51 3.02
519 527 4.828939 ACTCATTTTGAATGCCAGACTTGA 59.171 37.500 0.00 0.00 0.00 3.02
520 528 4.921515 CACTCATTTTGAATGCCAGACTTG 59.078 41.667 0.00 0.00 0.00 3.16
521 529 4.560108 GCACTCATTTTGAATGCCAGACTT 60.560 41.667 0.00 0.00 43.09 3.01
522 530 3.057033 GCACTCATTTTGAATGCCAGACT 60.057 43.478 0.00 0.00 43.09 3.24
523 531 3.248266 GCACTCATTTTGAATGCCAGAC 58.752 45.455 0.00 0.00 43.09 3.51
524 532 3.581024 GCACTCATTTTGAATGCCAGA 57.419 42.857 0.00 0.00 43.09 3.86
789 808 9.807649 CAGAACCTTTTCCCTCAAAATTATATG 57.192 33.333 0.00 0.00 33.34 1.78
869 899 2.195922 CACCTTCAAAACACAAGCAGC 58.804 47.619 0.00 0.00 0.00 5.25
881 911 8.493607 TGGATGATCTATATCAAACACCTTCAA 58.506 33.333 0.00 0.00 45.12 2.69
1053 1083 7.181143 TGATTTACTTCGTACAGTGGAAAAC 57.819 36.000 0.00 0.00 0.00 2.43
1170 1200 4.093408 GTGAGAAAGACGCATGCAAAGATA 59.907 41.667 19.57 0.00 0.00 1.98
1177 1207 0.867746 TGTGTGAGAAAGACGCATGC 59.132 50.000 7.91 7.91 0.00 4.06
1182 1212 3.971150 AGAGAAGTGTGTGAGAAAGACG 58.029 45.455 0.00 0.00 0.00 4.18
1192 1222 1.672881 GCACAGCAAAGAGAAGTGTGT 59.327 47.619 0.00 0.00 40.54 3.72
1198 1228 2.035961 AGACTACGCACAGCAAAGAGAA 59.964 45.455 0.00 0.00 0.00 2.87
1200 1230 2.071688 AGACTACGCACAGCAAAGAG 57.928 50.000 0.00 0.00 0.00 2.85
1202 1232 2.029728 GCATAGACTACGCACAGCAAAG 59.970 50.000 0.00 0.00 0.00 2.77
1261 1293 6.068010 ACTTATGGACCATTCAAACTGACAA 58.932 36.000 13.40 0.00 0.00 3.18
1307 1339 9.651913 AAAATGGTGAATACAAAACATGATACC 57.348 29.630 0.00 0.00 0.00 2.73
1344 1380 5.204409 TGGTGTGTACTTCAACTCGTAAT 57.796 39.130 7.82 0.00 0.00 1.89
1458 1632 5.860182 CAGACCTCATTTGTTTACTGCAATG 59.140 40.000 0.00 0.00 0.00 2.82
1508 1683 8.641499 TTTTAGCAACATAACCTTTTCAGTTG 57.359 30.769 0.00 0.00 39.32 3.16
1585 1760 5.580297 TCATTTCAAAACCTGCAACAACTTC 59.420 36.000 0.00 0.00 0.00 3.01
1703 1878 1.065491 TCCAACCAATCGATCAGTGGG 60.065 52.381 16.95 14.89 36.69 4.61
2018 2193 2.682594 AGCACTGCTATATCCTCCACA 58.317 47.619 0.21 0.00 36.99 4.17
2035 2210 9.248291 GAAGTGAACATTAAGAAAATGAAAGCA 57.752 29.630 4.82 0.00 0.00 3.91
2287 2464 1.824230 GCAACCCCAATCAGCACATAA 59.176 47.619 0.00 0.00 0.00 1.90
2294 2471 1.134907 GCATTCTGCAACCCCAATCAG 60.135 52.381 0.00 0.00 44.26 2.90
2351 2528 8.807667 ATGTTCTCAATTTTCATTGAACTGTC 57.192 30.769 0.00 0.00 46.67 3.51
2432 2609 4.777463 ACCCATAATAACCTCCTGAAACG 58.223 43.478 0.00 0.00 0.00 3.60
2480 2658 6.379703 AGCCAATGCACAACAACCTAATATTA 59.620 34.615 0.00 0.00 41.13 0.98
2486 2664 1.993956 AGCCAATGCACAACAACCTA 58.006 45.000 0.00 0.00 41.13 3.08
2489 2667 6.966435 AATATAAAGCCAATGCACAACAAC 57.034 33.333 0.00 0.00 41.13 3.32
2587 2765 6.369065 ACTTACACTTGCTAGCAACATTAGTC 59.631 38.462 26.06 0.00 0.00 2.59
2589 2767 6.727824 ACTTACACTTGCTAGCAACATTAG 57.272 37.500 26.06 17.96 0.00 1.73
2590 2768 6.934645 AGAACTTACACTTGCTAGCAACATTA 59.065 34.615 26.06 13.43 0.00 1.90
2591 2769 5.765182 AGAACTTACACTTGCTAGCAACATT 59.235 36.000 26.06 14.40 0.00 2.71
2592 2770 5.308825 AGAACTTACACTTGCTAGCAACAT 58.691 37.500 26.06 14.32 0.00 2.71
2593 2771 4.703897 AGAACTTACACTTGCTAGCAACA 58.296 39.130 26.06 7.55 0.00 3.33
2594 2772 4.152580 GGAGAACTTACACTTGCTAGCAAC 59.847 45.833 26.06 12.81 0.00 4.17
2596 2774 3.578716 AGGAGAACTTACACTTGCTAGCA 59.421 43.478 14.93 14.93 0.00 3.49
2597 2775 4.081917 AGAGGAGAACTTACACTTGCTAGC 60.082 45.833 8.10 8.10 0.00 3.42
2598 2776 5.047660 ACAGAGGAGAACTTACACTTGCTAG 60.048 44.000 0.00 0.00 0.00 3.42
2599 2777 4.833380 ACAGAGGAGAACTTACACTTGCTA 59.167 41.667 0.00 0.00 0.00 3.49
2602 2780 9.706691 TTATTTACAGAGGAGAACTTACACTTG 57.293 33.333 0.00 0.00 0.00 3.16
2627 2805 8.201242 ACCATGTTACAGGTCCAAATAAAATT 57.799 30.769 0.00 0.00 30.79 1.82
2647 2825 2.294979 CCATGACAGTCCATGACCATG 58.705 52.381 12.17 3.11 44.98 3.66
2849 3028 6.565036 AGCCATTTTAGAAATAGCCCCATAT 58.435 36.000 1.23 0.00 0.00 1.78
2996 3176 7.752239 AGCGATGAAATTTATGAGACAACAAAG 59.248 33.333 0.00 0.00 0.00 2.77
3227 3408 5.813672 TGATTTCAAACTATACCGTACAGGC 59.186 40.000 4.00 0.00 46.52 4.85
3467 3659 5.793030 ACAGTAGACCATATAGCTCAACC 57.207 43.478 0.00 0.00 0.00 3.77
3583 3775 6.428159 AGCAGTACTTTTCCTTACTCAACATG 59.572 38.462 0.00 0.00 0.00 3.21
3717 3912 2.019807 ACTTTGGAACGGAGGGAGTA 57.980 50.000 0.00 0.00 0.00 2.59
3718 3913 2.019807 TACTTTGGAACGGAGGGAGT 57.980 50.000 0.00 0.00 0.00 3.85
3719 3914 3.705072 ACTATACTTTGGAACGGAGGGAG 59.295 47.826 0.00 0.00 0.00 4.30
3720 3915 3.449737 CACTATACTTTGGAACGGAGGGA 59.550 47.826 0.00 0.00 0.00 4.20
3721 3916 3.793559 CACTATACTTTGGAACGGAGGG 58.206 50.000 0.00 0.00 0.00 4.30
3722 3917 3.195661 GCACTATACTTTGGAACGGAGG 58.804 50.000 0.00 0.00 0.00 4.30
3723 3918 2.858344 CGCACTATACTTTGGAACGGAG 59.142 50.000 0.00 0.00 0.00 4.63
3724 3919 2.231964 ACGCACTATACTTTGGAACGGA 59.768 45.455 0.00 0.00 0.00 4.69
3725 3920 2.601763 GACGCACTATACTTTGGAACGG 59.398 50.000 0.00 0.00 0.00 4.44
3726 3921 2.601763 GGACGCACTATACTTTGGAACG 59.398 50.000 0.00 0.00 0.00 3.95
3727 3922 3.858247 AGGACGCACTATACTTTGGAAC 58.142 45.455 0.00 0.00 0.00 3.62
3728 3923 3.428452 CGAGGACGCACTATACTTTGGAA 60.428 47.826 0.00 0.00 0.00 3.53
3729 3924 2.098607 CGAGGACGCACTATACTTTGGA 59.901 50.000 0.00 0.00 0.00 3.53
3730 3925 2.460918 CGAGGACGCACTATACTTTGG 58.539 52.381 0.00 0.00 0.00 3.28
3731 3926 2.159282 ACCGAGGACGCACTATACTTTG 60.159 50.000 0.00 0.00 38.29 2.77
3732 3927 2.097825 ACCGAGGACGCACTATACTTT 58.902 47.619 0.00 0.00 38.29 2.66
3733 3928 1.760192 ACCGAGGACGCACTATACTT 58.240 50.000 0.00 0.00 38.29 2.24
3734 3929 1.760192 AACCGAGGACGCACTATACT 58.240 50.000 0.00 0.00 38.29 2.12
3735 3930 2.457970 GAAACCGAGGACGCACTATAC 58.542 52.381 0.00 0.00 38.29 1.47
3736 3931 1.406539 GGAAACCGAGGACGCACTATA 59.593 52.381 0.00 0.00 38.29 1.31
3737 3932 0.175073 GGAAACCGAGGACGCACTAT 59.825 55.000 0.00 0.00 38.29 2.12
3738 3933 1.588082 GGAAACCGAGGACGCACTA 59.412 57.895 0.00 0.00 38.29 2.74
3739 3934 2.342648 GGAAACCGAGGACGCACT 59.657 61.111 0.00 0.00 38.29 4.40
3750 3945 0.030235 AAAGTTGAAGCGCGGAAACC 59.970 50.000 8.83 0.00 0.00 3.27
3751 3946 1.120437 CAAAGTTGAAGCGCGGAAAC 58.880 50.000 8.83 7.91 0.00 2.78
3752 3947 1.018148 TCAAAGTTGAAGCGCGGAAA 58.982 45.000 8.83 0.00 33.55 3.13
3753 3948 0.306533 GTCAAAGTTGAAGCGCGGAA 59.693 50.000 8.83 0.00 39.21 4.30
3754 3949 1.503818 GGTCAAAGTTGAAGCGCGGA 61.504 55.000 8.83 0.00 39.21 5.54
3755 3950 1.082104 GGTCAAAGTTGAAGCGCGG 60.082 57.895 8.83 0.00 39.21 6.46
3756 3951 0.238289 ATGGTCAAAGTTGAAGCGCG 59.762 50.000 0.00 0.00 39.21 6.86
3757 3952 3.552604 TTATGGTCAAAGTTGAAGCGC 57.447 42.857 0.00 0.00 39.21 5.92
3758 3953 8.424731 GTTAAATTTATGGTCAAAGTTGAAGCG 58.575 33.333 0.00 0.00 39.21 4.68
3759 3954 8.708742 GGTTAAATTTATGGTCAAAGTTGAAGC 58.291 33.333 0.00 0.00 39.21 3.86
3760 3955 9.757227 TGGTTAAATTTATGGTCAAAGTTGAAG 57.243 29.630 0.00 0.00 39.21 3.02
3762 3957 9.535878 GTTGGTTAAATTTATGGTCAAAGTTGA 57.464 29.630 0.00 0.00 34.20 3.18
3763 3958 8.484008 CGTTGGTTAAATTTATGGTCAAAGTTG 58.516 33.333 0.00 0.00 29.44 3.16
3764 3959 8.414778 TCGTTGGTTAAATTTATGGTCAAAGTT 58.585 29.630 0.00 0.00 31.36 2.66
3765 3960 7.942990 TCGTTGGTTAAATTTATGGTCAAAGT 58.057 30.769 0.00 0.00 0.00 2.66
3766 3961 8.293867 TCTCGTTGGTTAAATTTATGGTCAAAG 58.706 33.333 0.00 4.88 0.00 2.77
3767 3962 8.077386 GTCTCGTTGGTTAAATTTATGGTCAAA 58.923 33.333 0.00 0.00 0.00 2.69
3768 3963 7.308710 GGTCTCGTTGGTTAAATTTATGGTCAA 60.309 37.037 0.00 0.00 0.00 3.18
3769 3964 6.149807 GGTCTCGTTGGTTAAATTTATGGTCA 59.850 38.462 0.00 0.00 0.00 4.02
3770 3965 6.149807 TGGTCTCGTTGGTTAAATTTATGGTC 59.850 38.462 0.00 0.00 0.00 4.02
3771 3966 6.005198 TGGTCTCGTTGGTTAAATTTATGGT 58.995 36.000 0.00 0.00 0.00 3.55
3772 3967 6.503589 TGGTCTCGTTGGTTAAATTTATGG 57.496 37.500 0.00 0.00 0.00 2.74
3773 3968 7.537306 CAGTTGGTCTCGTTGGTTAAATTTATG 59.463 37.037 0.00 0.00 0.00 1.90
3774 3969 7.590279 CAGTTGGTCTCGTTGGTTAAATTTAT 58.410 34.615 0.00 0.00 0.00 1.40
3775 3970 6.513720 GCAGTTGGTCTCGTTGGTTAAATTTA 60.514 38.462 0.00 0.00 0.00 1.40
3776 3971 5.735070 GCAGTTGGTCTCGTTGGTTAAATTT 60.735 40.000 0.00 0.00 0.00 1.82
3777 3972 4.261447 GCAGTTGGTCTCGTTGGTTAAATT 60.261 41.667 0.00 0.00 0.00 1.82
3778 3973 3.252458 GCAGTTGGTCTCGTTGGTTAAAT 59.748 43.478 0.00 0.00 0.00 1.40
3779 3974 2.614983 GCAGTTGGTCTCGTTGGTTAAA 59.385 45.455 0.00 0.00 0.00 1.52
3780 3975 2.215196 GCAGTTGGTCTCGTTGGTTAA 58.785 47.619 0.00 0.00 0.00 2.01
3781 3976 1.870580 CGCAGTTGGTCTCGTTGGTTA 60.871 52.381 0.00 0.00 0.00 2.85
3782 3977 1.157870 CGCAGTTGGTCTCGTTGGTT 61.158 55.000 0.00 0.00 0.00 3.67
3783 3978 1.594293 CGCAGTTGGTCTCGTTGGT 60.594 57.895 0.00 0.00 0.00 3.67
3784 3979 2.317609 CCGCAGTTGGTCTCGTTGG 61.318 63.158 0.00 0.00 0.00 3.77
3785 3980 2.954753 GCCGCAGTTGGTCTCGTTG 61.955 63.158 0.00 0.00 0.00 4.10
3786 3981 2.665185 GCCGCAGTTGGTCTCGTT 60.665 61.111 0.00 0.00 0.00 3.85
3795 3990 4.947147 TTTGCTCCCGCCGCAGTT 62.947 61.111 0.00 0.00 38.80 3.16
3796 3991 4.947147 TTTTGCTCCCGCCGCAGT 62.947 61.111 0.00 0.00 38.80 4.40
3797 3992 2.490993 AATTTTTGCTCCCGCCGCAG 62.491 55.000 0.00 0.00 38.80 5.18
3798 3993 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
3799 3994 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
3800 3995 3.915437 ATATAATTTTTGCTCCCGCCG 57.085 42.857 0.00 0.00 34.43 6.46
3801 3996 7.375053 TCAATTATATAATTTTTGCTCCCGCC 58.625 34.615 16.47 0.00 33.88 6.13
3802 3997 8.810652 TTCAATTATATAATTTTTGCTCCCGC 57.189 30.769 16.47 0.00 33.88 6.13
3837 4032 8.665643 AAATTATACCGGTGAATTCGTATTCA 57.334 30.769 19.93 12.80 45.99 2.57
3838 4033 9.940166 AAAAATTATACCGGTGAATTCGTATTC 57.060 29.630 19.93 7.74 40.50 1.75
3839 4034 9.724839 CAAAAATTATACCGGTGAATTCGTATT 57.275 29.630 19.93 10.71 0.00 1.89
3840 4035 7.858879 GCAAAAATTATACCGGTGAATTCGTAT 59.141 33.333 19.93 1.82 0.00 3.06
3841 4036 7.066043 AGCAAAAATTATACCGGTGAATTCGTA 59.934 33.333 19.93 0.00 0.00 3.43
3842 4037 6.031471 GCAAAAATTATACCGGTGAATTCGT 58.969 36.000 19.93 11.28 0.00 3.85
3843 4038 6.262601 AGCAAAAATTATACCGGTGAATTCG 58.737 36.000 19.93 14.48 0.00 3.34
3844 4039 7.222031 GGAAGCAAAAATTATACCGGTGAATTC 59.778 37.037 19.93 10.48 0.00 2.17
3845 4040 7.039270 GGAAGCAAAAATTATACCGGTGAATT 58.961 34.615 19.93 19.11 0.00 2.17
3846 4041 6.569780 GGAAGCAAAAATTATACCGGTGAAT 58.430 36.000 19.93 13.99 0.00 2.57
3847 4042 5.392165 CGGAAGCAAAAATTATACCGGTGAA 60.392 40.000 19.93 12.06 36.27 3.18
3848 4043 4.095185 CGGAAGCAAAAATTATACCGGTGA 59.905 41.667 19.93 1.17 36.27 4.02
3849 4044 4.347813 CGGAAGCAAAAATTATACCGGTG 58.652 43.478 19.93 0.00 36.27 4.94
3850 4045 4.625972 CGGAAGCAAAAATTATACCGGT 57.374 40.909 13.98 13.98 36.27 5.28
3866 4061 1.294659 GAGACCAACTGCAGCGGAAG 61.295 60.000 25.46 8.71 0.00 3.46
3867 4062 1.301716 GAGACCAACTGCAGCGGAA 60.302 57.895 25.46 0.00 0.00 4.30
3868 4063 1.830587 ATGAGACCAACTGCAGCGGA 61.831 55.000 25.46 7.00 0.00 5.54
3869 4064 0.957395 AATGAGACCAACTGCAGCGG 60.957 55.000 15.27 17.39 0.00 5.52
3870 4065 0.167470 CAATGAGACCAACTGCAGCG 59.833 55.000 15.27 5.03 0.00 5.18
3871 4066 0.524862 CCAATGAGACCAACTGCAGC 59.475 55.000 15.27 0.00 0.00 5.25
3872 4067 1.901591 ACCAATGAGACCAACTGCAG 58.098 50.000 13.48 13.48 0.00 4.41
3873 4068 2.363306 AACCAATGAGACCAACTGCA 57.637 45.000 0.00 0.00 0.00 4.41
3874 4069 4.846779 TTTAACCAATGAGACCAACTGC 57.153 40.909 0.00 0.00 0.00 4.40
3875 4070 9.357652 CATAAATTTAACCAATGAGACCAACTG 57.642 33.333 1.21 0.00 0.00 3.16
3876 4071 8.531146 CCATAAATTTAACCAATGAGACCAACT 58.469 33.333 1.21 0.00 0.00 3.16
3877 4072 8.311109 ACCATAAATTTAACCAATGAGACCAAC 58.689 33.333 1.21 0.00 0.00 3.77
3878 4073 8.429237 ACCATAAATTTAACCAATGAGACCAA 57.571 30.769 1.21 0.00 0.00 3.67
3879 4074 7.671819 TGACCATAAATTTAACCAATGAGACCA 59.328 33.333 1.21 0.00 0.00 4.02
3880 4075 8.062065 TGACCATAAATTTAACCAATGAGACC 57.938 34.615 1.21 0.00 0.00 3.85
3881 4076 9.921637 TTTGACCATAAATTTAACCAATGAGAC 57.078 29.630 1.21 0.00 0.00 3.36
3883 4078 9.927668 ACTTTGACCATAAATTTAACCAATGAG 57.072 29.630 1.21 3.35 0.00 2.90
3888 4083 9.535878 GTTCAACTTTGACCATAAATTTAACCA 57.464 29.630 1.21 0.00 36.83 3.67
3889 4084 8.984764 GGTTCAACTTTGACCATAAATTTAACC 58.015 33.333 1.21 0.00 36.83 2.85
3890 4085 9.758651 AGGTTCAACTTTGACCATAAATTTAAC 57.241 29.630 1.21 0.00 36.83 2.01
3891 4086 9.974980 GAGGTTCAACTTTGACCATAAATTTAA 57.025 29.630 1.21 0.00 36.83 1.52
3892 4087 8.293867 CGAGGTTCAACTTTGACCATAAATTTA 58.706 33.333 0.00 0.00 36.83 1.40
3893 4088 7.145323 CGAGGTTCAACTTTGACCATAAATTT 58.855 34.615 0.00 0.00 36.83 1.82
3894 4089 6.294508 CCGAGGTTCAACTTTGACCATAAATT 60.295 38.462 11.01 0.00 36.83 1.82
3895 4090 5.183140 CCGAGGTTCAACTTTGACCATAAAT 59.817 40.000 11.01 0.00 36.83 1.40
3896 4091 4.517453 CCGAGGTTCAACTTTGACCATAAA 59.483 41.667 11.01 0.00 36.83 1.40
3897 4092 4.069304 CCGAGGTTCAACTTTGACCATAA 58.931 43.478 11.01 0.00 36.83 1.90
3898 4093 3.558321 CCCGAGGTTCAACTTTGACCATA 60.558 47.826 11.01 0.00 36.83 2.74
3899 4094 2.504367 CCGAGGTTCAACTTTGACCAT 58.496 47.619 11.01 0.00 36.83 3.55
3900 4095 1.476110 CCCGAGGTTCAACTTTGACCA 60.476 52.381 11.01 0.00 36.83 4.02
3901 4096 1.202722 TCCCGAGGTTCAACTTTGACC 60.203 52.381 0.00 0.00 36.83 4.02
3902 4097 2.249844 TCCCGAGGTTCAACTTTGAC 57.750 50.000 0.00 0.00 36.83 3.18
3903 4098 2.846193 CTTCCCGAGGTTCAACTTTGA 58.154 47.619 0.00 0.00 34.92 2.69
3904 4099 1.266989 GCTTCCCGAGGTTCAACTTTG 59.733 52.381 0.00 0.00 0.00 2.77
3905 4100 1.605753 GCTTCCCGAGGTTCAACTTT 58.394 50.000 0.00 0.00 0.00 2.66
3906 4101 0.602905 CGCTTCCCGAGGTTCAACTT 60.603 55.000 0.00 0.00 40.02 2.66
3907 4102 1.004918 CGCTTCCCGAGGTTCAACT 60.005 57.895 0.00 0.00 40.02 3.16
3908 4103 1.301479 ACGCTTCCCGAGGTTCAAC 60.301 57.895 0.00 0.00 41.02 3.18
3909 4104 1.301401 CACGCTTCCCGAGGTTCAA 60.301 57.895 0.00 0.00 41.02 2.69
3910 4105 2.342279 CACGCTTCCCGAGGTTCA 59.658 61.111 0.00 0.00 41.02 3.18
3911 4106 2.434359 CCACGCTTCCCGAGGTTC 60.434 66.667 0.00 0.00 41.93 3.62
3912 4107 4.016706 CCCACGCTTCCCGAGGTT 62.017 66.667 0.00 0.00 44.85 3.50
3924 4119 0.384230 CAAAATATAGCGCGCCCACG 60.384 55.000 30.33 4.40 44.07 4.94
3925 4120 0.040425 CCAAAATATAGCGCGCCCAC 60.040 55.000 30.33 0.00 0.00 4.61
3926 4121 0.179043 TCCAAAATATAGCGCGCCCA 60.179 50.000 30.33 17.44 0.00 5.36
3927 4122 0.948678 TTCCAAAATATAGCGCGCCC 59.051 50.000 30.33 0.16 0.00 6.13
3928 4123 1.659211 CGTTCCAAAATATAGCGCGCC 60.659 52.381 30.33 10.31 0.00 6.53
3929 4124 1.658968 CGTTCCAAAATATAGCGCGC 58.341 50.000 26.66 26.66 0.00 6.86
3930 4125 1.862201 TCCGTTCCAAAATATAGCGCG 59.138 47.619 0.00 0.00 0.00 6.86
3931 4126 2.223377 CCTCCGTTCCAAAATATAGCGC 59.777 50.000 0.00 0.00 0.00 5.92
3932 4127 2.806244 CCCTCCGTTCCAAAATATAGCG 59.194 50.000 0.00 0.00 0.00 4.26
3933 4128 4.065789 CTCCCTCCGTTCCAAAATATAGC 58.934 47.826 0.00 0.00 0.00 2.97
3934 4129 5.291905 ACTCCCTCCGTTCCAAAATATAG 57.708 43.478 0.00 0.00 0.00 1.31
3935 4130 6.811634 TTACTCCCTCCGTTCCAAAATATA 57.188 37.500 0.00 0.00 0.00 0.86
3936 4131 5.703730 TTACTCCCTCCGTTCCAAAATAT 57.296 39.130 0.00 0.00 0.00 1.28
3937 4132 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
3938 4133 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
3939 4134 4.533311 AGTATTACTCCCTCCGTTCCAAAA 59.467 41.667 0.00 0.00 0.00 2.44
3940 4135 4.098894 AGTATTACTCCCTCCGTTCCAAA 58.901 43.478 0.00 0.00 0.00 3.28
3941 4136 3.716431 AGTATTACTCCCTCCGTTCCAA 58.284 45.455 0.00 0.00 0.00 3.53
3942 4137 3.393426 AGTATTACTCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
3943 4138 4.723309 TCTAGTATTACTCCCTCCGTTCC 58.277 47.826 0.00 0.00 0.00 3.62
3944 4139 6.096001 TGTTTCTAGTATTACTCCCTCCGTTC 59.904 42.308 0.00 0.00 0.00 3.95
3945 4140 5.954150 TGTTTCTAGTATTACTCCCTCCGTT 59.046 40.000 0.00 0.00 0.00 4.44
3946 4141 5.513233 TGTTTCTAGTATTACTCCCTCCGT 58.487 41.667 0.00 0.00 0.00 4.69
3947 4142 6.651975 ATGTTTCTAGTATTACTCCCTCCG 57.348 41.667 0.00 0.00 0.00 4.63
3948 4143 9.682465 AAAAATGTTTCTAGTATTACTCCCTCC 57.318 33.333 0.00 0.00 0.00 4.30
4077 4434 6.978080 GTGTTGATCACATTGTGGTACTTTTT 59.022 34.615 16.46 0.00 45.51 1.94
4078 4435 6.503524 GTGTTGATCACATTGTGGTACTTTT 58.496 36.000 16.46 0.00 45.51 2.27
4079 4436 6.072112 GTGTTGATCACATTGTGGTACTTT 57.928 37.500 16.46 0.00 45.51 2.66
4103 4463 7.584987 AGTCATTTTATCCACTCAAACTTTCG 58.415 34.615 0.00 0.00 0.00 3.46
4177 4541 5.127845 AGTGGATCAGTTACCAGTGTCTATG 59.872 44.000 0.00 0.00 38.26 2.23
4180 4544 3.259374 CAGTGGATCAGTTACCAGTGTCT 59.741 47.826 0.00 0.00 46.45 3.41
4229 4593 9.258826 TGTTCTTTTGAATTGGAAACACATATG 57.741 29.630 0.00 0.00 40.94 1.78
4240 4604 8.314143 ACAGCAATTATGTTCTTTTGAATTGG 57.686 30.769 7.52 0.00 40.94 3.16
5124 5500 9.112658 ACATAGCCCCTAGATTAAAGCTAATTA 57.887 33.333 0.00 0.00 36.50 1.40
5144 5520 5.355350 AGCCAACACTATTTCTCAACATAGC 59.645 40.000 0.00 0.00 0.00 2.97
5181 5557 0.974010 CAAAGCCAGGCACATCCCAT 60.974 55.000 15.80 0.00 34.51 4.00
5548 5925 4.285775 TGTTTTTCCCCTGGGATCATTTTC 59.714 41.667 16.20 0.00 44.74 2.29
5703 6178 5.106317 ACCCACATGACAAAACGAACATATC 60.106 40.000 0.00 0.00 0.00 1.63
5935 6410 2.224426 TGAAAGAGCTAAAAGGCGGACA 60.224 45.455 0.00 0.00 37.29 4.02
6041 6516 8.308931 CAACCAAAATGCTGATATAATGGCTAT 58.691 33.333 0.00 0.00 0.00 2.97
6291 6766 8.161699 ACACTGAAAAACATAAACCGTCTTAT 57.838 30.769 0.00 0.00 0.00 1.73
6311 6786 7.930513 TTAGATGCTTCGAATATGTACACTG 57.069 36.000 0.00 0.00 0.00 3.66
6427 6902 6.434028 ACACTTTCAGGCTGCAGAAATTATTA 59.566 34.615 20.43 0.00 33.69 0.98
6456 6939 6.762187 CAGCATCTAGAATGTCTGTGATTTCT 59.238 38.462 0.00 0.00 33.29 2.52
7213 7696 1.114627 ACATGAGCATAGAGGCGACA 58.885 50.000 0.00 0.00 39.27 4.35
7568 8129 1.674322 CCCCGCCGTGTCTTTGAAT 60.674 57.895 0.00 0.00 0.00 2.57
7643 8204 6.701841 GCTCGACCAATGATTACAAGAAGATA 59.298 38.462 0.00 0.00 0.00 1.98
7759 8321 0.179936 CCTCTCCTCTCAATGTGGCC 59.820 60.000 0.00 0.00 0.00 5.36
7881 8447 9.590451 CATACAAGGCATATGAATTTCAAAGTT 57.410 29.630 6.97 0.00 32.66 2.66
7949 8515 6.466885 TTTGGGAGAACGTATTTGGAAAAA 57.533 33.333 0.00 0.00 0.00 1.94
7950 8516 6.466885 TTTTGGGAGAACGTATTTGGAAAA 57.533 33.333 0.00 0.00 0.00 2.29
7990 8556 2.201732 GCTTCGTCCGATTGCATCTAA 58.798 47.619 9.30 0.00 0.00 2.10
8005 8571 4.371855 TCTGGATAGTGTTACTGCTTCG 57.628 45.455 0.00 0.00 0.00 3.79
8056 8622 0.654683 TTGCAACGCAAAATGTTGGC 59.345 45.000 0.00 0.00 45.96 4.52
8207 8789 2.256117 AGTTTGACAGGCTACGCTTT 57.744 45.000 0.00 0.00 0.00 3.51
8208 8790 1.873591 CAAGTTTGACAGGCTACGCTT 59.126 47.619 0.00 0.00 0.00 4.68
8209 8791 1.512926 CAAGTTTGACAGGCTACGCT 58.487 50.000 0.00 0.00 0.00 5.07
8210 8792 0.110192 GCAAGTTTGACAGGCTACGC 60.110 55.000 0.00 0.00 0.00 4.42
8211 8793 1.225855 TGCAAGTTTGACAGGCTACG 58.774 50.000 0.00 0.00 0.00 3.51
8251 8833 1.509703 AAGACGGAAACTTTCGCTCC 58.490 50.000 0.00 0.00 0.00 4.70
8277 8859 4.627900 GGAAACGGATTTCTCTTCTCTCAC 59.372 45.833 0.23 0.00 43.33 3.51
8278 8860 4.822026 GGAAACGGATTTCTCTTCTCTCA 58.178 43.478 0.23 0.00 43.33 3.27
8342 8925 1.451067 CTCCAAGAAGAAGGCAGCAG 58.549 55.000 0.00 0.00 0.00 4.24
8443 9089 2.758327 TGGCGGTATCTGGCTCGT 60.758 61.111 3.98 0.00 0.00 4.18
8583 9241 2.043852 AGGAGGGCGATGTCGTCT 60.044 61.111 6.98 3.86 44.45 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.