Multiple sequence alignment - TraesCS6D01G324700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G324700 chr6D 100.000 3930 0 0 1 3930 431251274 431255203 0.000000e+00 7258.0
1 TraesCS6D01G324700 chr6D 96.732 612 20 0 1 612 69101621 69101010 0.000000e+00 1020.0
2 TraesCS6D01G324700 chr6D 96.732 612 20 0 1 612 431214334 431214945 0.000000e+00 1020.0
3 TraesCS6D01G324700 chr6D 81.910 398 46 10 1261 1636 31090244 31089851 2.950000e-81 313.0
4 TraesCS6D01G324700 chr6D 96.622 148 3 1 3693 3840 431260197 431260342 1.090000e-60 244.0
5 TraesCS6D01G324700 chr6D 88.608 79 6 1 3617 3692 132306391 132306313 4.180000e-15 93.5
6 TraesCS6D01G324700 chr6B 93.139 1574 102 4 2121 3692 438299624 438301193 0.000000e+00 2303.0
7 TraesCS6D01G324700 chr2A 87.889 1222 102 12 2474 3692 49298418 49299596 0.000000e+00 1395.0
8 TraesCS6D01G324700 chr2A 83.817 723 73 18 2746 3435 761151984 761152695 0.000000e+00 647.0
9 TraesCS6D01G324700 chr2A 85.000 120 15 1 3576 3692 734967797 734967916 6.900000e-23 119.0
10 TraesCS6D01G324700 chr2B 92.653 735 43 7 1019 1749 24990412 24991139 0.000000e+00 1048.0
11 TraesCS6D01G324700 chr2B 83.238 1044 115 24 2699 3692 268008485 268007452 0.000000e+00 904.0
12 TraesCS6D01G324700 chr2B 83.179 755 90 16 2967 3692 262504496 262505242 0.000000e+00 656.0
13 TraesCS6D01G324700 chr2B 93.023 344 18 2 645 983 707253041 707253383 7.580000e-137 497.0
14 TraesCS6D01G324700 chr2B 83.436 163 25 2 2474 2634 189015563 189015725 2.450000e-32 150.0
15 TraesCS6D01G324700 chr5D 97.386 612 16 0 1 612 121099364 121099975 0.000000e+00 1042.0
16 TraesCS6D01G324700 chr5D 97.059 612 18 0 1 612 78002732 78003343 0.000000e+00 1031.0
17 TraesCS6D01G324700 chr5D 93.994 333 20 0 645 977 469797564 469797896 4.530000e-139 505.0
18 TraesCS6D01G324700 chr5D 99.206 126 1 0 3805 3930 529743680 529743805 1.100000e-55 228.0
19 TraesCS6D01G324700 chr5D 96.040 101 4 0 3693 3793 529748796 529748896 8.740000e-37 165.0
20 TraesCS6D01G324700 chr5D 92.381 105 8 0 1638 1742 469801751 469801855 2.450000e-32 150.0
21 TraesCS6D01G324700 chr5D 85.833 120 17 0 3811 3930 446285460 446285341 1.150000e-25 128.0
22 TraesCS6D01G324700 chr1D 97.222 612 17 0 1 612 261822730 261822119 0.000000e+00 1037.0
23 TraesCS6D01G324700 chr1D 85.124 242 12 5 3689 3930 124901995 124901778 3.950000e-55 226.0
24 TraesCS6D01G324700 chr3D 97.059 612 18 0 1 612 59183998 59183387 0.000000e+00 1031.0
25 TraesCS6D01G324700 chr7D 96.895 612 19 0 1 612 255610653 255611264 0.000000e+00 1026.0
26 TraesCS6D01G324700 chr7D 87.302 126 16 0 1617 1742 3716539 3716664 1.140000e-30 145.0
27 TraesCS6D01G324700 chr7D 90.789 76 7 0 3830 3905 237553687 237553612 6.950000e-18 102.0
28 TraesCS6D01G324700 chr2D 96.895 612 19 0 1 612 135390142 135389531 0.000000e+00 1026.0
29 TraesCS6D01G324700 chr2D 96.895 612 18 1 1 612 556920717 556921327 0.000000e+00 1024.0
30 TraesCS6D01G324700 chr4D 93.323 659 31 4 645 1291 477366964 477367621 0.000000e+00 961.0
31 TraesCS6D01G324700 chr4D 91.837 441 23 4 648 1076 509223362 509222923 1.560000e-168 603.0
32 TraesCS6D01G324700 chr4D 95.152 330 16 0 648 977 28441869 28441540 4.500000e-144 521.0
33 TraesCS6D01G324700 chr4D 97.222 108 3 0 1070 1177 509211895 509211788 2.410000e-42 183.0
34 TraesCS6D01G324700 chr4D 90.625 96 9 0 1656 1751 28429527 28429432 1.150000e-25 128.0
35 TraesCS6D01G324700 chr7A 82.617 1047 120 26 2697 3692 558250238 558251273 0.000000e+00 869.0
36 TraesCS6D01G324700 chr7A 93.694 333 21 0 645 977 38529148 38529480 2.110000e-137 499.0
37 TraesCS6D01G324700 chr7A 87.302 126 16 0 1617 1742 38534860 38534985 1.140000e-30 145.0
38 TraesCS6D01G324700 chr7A 87.302 126 16 0 1617 1742 38559406 38559531 1.140000e-30 145.0
39 TraesCS6D01G324700 chr7A 87.302 126 16 0 1617 1742 38651758 38651883 1.140000e-30 145.0
40 TraesCS6D01G324700 chr7A 86.508 126 17 0 1617 1742 38623003 38623128 5.300000e-29 139.0
41 TraesCS6D01G324700 chr1A 82.521 1047 124 27 2697 3692 200578796 200577758 0.000000e+00 865.0
42 TraesCS6D01G324700 chr1A 88.755 249 22 2 773 1015 7104141 7103893 2.300000e-77 300.0
43 TraesCS6D01G324700 chr5A 84.193 892 103 17 2831 3692 220456653 220455770 0.000000e+00 832.0
44 TraesCS6D01G324700 chr4B 83.592 774 83 17 2697 3435 300057403 300056639 0.000000e+00 686.0
45 TraesCS6D01G324700 chr4B 80.409 342 58 4 2131 2465 382158887 382158548 6.520000e-63 252.0
46 TraesCS6D01G324700 chr3A 94.595 333 18 0 645 977 120840050 120840382 2.090000e-142 516.0
47 TraesCS6D01G324700 chr3A 87.565 386 42 4 1047 1427 648180968 648181352 3.600000e-120 442.0
48 TraesCS6D01G324700 chr7B 92.887 239 9 1 3692 3930 409794003 409793773 1.350000e-89 340.0
49 TraesCS6D01G324700 chr7B 92.466 146 9 1 3693 3838 409792268 409792125 1.430000e-49 207.0
50 TraesCS6D01G324700 chr7B 90.789 76 7 0 3830 3905 204008112 204008037 6.950000e-18 102.0
51 TraesCS6D01G324700 chr1B 87.589 282 25 7 1768 2044 626075821 626075545 6.340000e-83 318.0
52 TraesCS6D01G324700 chr1B 92.793 111 8 0 3820 3930 188822916 188822806 1.130000e-35 161.0
53 TraesCS6D01G324700 chr4A 84.404 109 15 2 3815 3921 332639767 332639875 5.370000e-19 106.0
54 TraesCS6D01G324700 chr4A 88.235 85 10 0 3821 3905 586082710 586082794 6.950000e-18 102.0
55 TraesCS6D01G324700 chr5B 93.750 64 4 0 1563 1626 649864967 649865030 3.230000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G324700 chr6D 431251274 431255203 3929 False 7258.0 7258 100.0000 1 3930 1 chr6D.!!$F2 3929
1 TraesCS6D01G324700 chr6D 69101010 69101621 611 True 1020.0 1020 96.7320 1 612 1 chr6D.!!$R2 611
2 TraesCS6D01G324700 chr6D 431214334 431214945 611 False 1020.0 1020 96.7320 1 612 1 chr6D.!!$F1 611
3 TraesCS6D01G324700 chr6B 438299624 438301193 1569 False 2303.0 2303 93.1390 2121 3692 1 chr6B.!!$F1 1571
4 TraesCS6D01G324700 chr2A 49298418 49299596 1178 False 1395.0 1395 87.8890 2474 3692 1 chr2A.!!$F1 1218
5 TraesCS6D01G324700 chr2A 761151984 761152695 711 False 647.0 647 83.8170 2746 3435 1 chr2A.!!$F3 689
6 TraesCS6D01G324700 chr2B 24990412 24991139 727 False 1048.0 1048 92.6530 1019 1749 1 chr2B.!!$F1 730
7 TraesCS6D01G324700 chr2B 268007452 268008485 1033 True 904.0 904 83.2380 2699 3692 1 chr2B.!!$R1 993
8 TraesCS6D01G324700 chr2B 262504496 262505242 746 False 656.0 656 83.1790 2967 3692 1 chr2B.!!$F3 725
9 TraesCS6D01G324700 chr5D 121099364 121099975 611 False 1042.0 1042 97.3860 1 612 1 chr5D.!!$F2 611
10 TraesCS6D01G324700 chr5D 78002732 78003343 611 False 1031.0 1031 97.0590 1 612 1 chr5D.!!$F1 611
11 TraesCS6D01G324700 chr5D 469797564 469801855 4291 False 327.5 505 93.1875 645 1742 2 chr5D.!!$F5 1097
12 TraesCS6D01G324700 chr1D 261822119 261822730 611 True 1037.0 1037 97.2220 1 612 1 chr1D.!!$R2 611
13 TraesCS6D01G324700 chr3D 59183387 59183998 611 True 1031.0 1031 97.0590 1 612 1 chr3D.!!$R1 611
14 TraesCS6D01G324700 chr7D 255610653 255611264 611 False 1026.0 1026 96.8950 1 612 1 chr7D.!!$F2 611
15 TraesCS6D01G324700 chr2D 135389531 135390142 611 True 1026.0 1026 96.8950 1 612 1 chr2D.!!$R1 611
16 TraesCS6D01G324700 chr2D 556920717 556921327 610 False 1024.0 1024 96.8950 1 612 1 chr2D.!!$F1 611
17 TraesCS6D01G324700 chr4D 477366964 477367621 657 False 961.0 961 93.3230 645 1291 1 chr4D.!!$F1 646
18 TraesCS6D01G324700 chr7A 558250238 558251273 1035 False 869.0 869 82.6170 2697 3692 1 chr7A.!!$F6 995
19 TraesCS6D01G324700 chr1A 200577758 200578796 1038 True 865.0 865 82.5210 2697 3692 1 chr1A.!!$R2 995
20 TraesCS6D01G324700 chr5A 220455770 220456653 883 True 832.0 832 84.1930 2831 3692 1 chr5A.!!$R1 861
21 TraesCS6D01G324700 chr4B 300056639 300057403 764 True 686.0 686 83.5920 2697 3435 1 chr4B.!!$R1 738
22 TraesCS6D01G324700 chr7B 409792125 409794003 1878 True 273.5 340 92.6765 3692 3930 2 chr7B.!!$R2 238

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 661 0.888619 TCATGTCTCGCCTCTTCGTT 59.111 50.0 0.0 0.0 0.0 3.85 F
1784 5002 0.099791 CGTTCCTTTGGTTGTTGCGT 59.900 50.0 0.0 0.0 0.0 5.24 F
1976 5194 0.031010 GTAGAGGGAGATGGGGTGGT 60.031 60.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 5175 0.031010 ACCACCCCATCTCCCTCTAC 60.031 60.0 0.00 0.0 0.00 2.59 R
2659 5878 0.680618 TGGTTCTGCAGCCAAAATGG 59.319 50.0 9.47 0.0 41.55 3.16 R
3800 7079 0.110010 TTTGTGTGTGTGTGTGTGCG 60.110 50.0 0.00 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 7.684670 TCTTTACTCGTTTCATAATGCATCAC 58.315 34.615 0.00 0.00 0.00 3.06
55 56 2.034558 CGTTTCATAATGCATCACCCCC 59.965 50.000 0.00 0.00 0.00 5.40
164 165 6.540189 CGGAGTGACAAATCCTAATCTTGATT 59.460 38.462 6.43 1.35 33.12 2.57
184 185 7.701539 TGATTTATGCCAACTCAACAAGTAT 57.298 32.000 0.00 0.00 37.17 2.12
247 248 1.070843 CGTTGTGACGTTTGGTAGCAG 60.071 52.381 0.00 0.00 44.08 4.24
485 486 4.276183 CGAGCTAGTCAAGTAGAGGCATAA 59.724 45.833 0.00 0.00 0.00 1.90
614 615 8.602472 AATAACAACTTTATTATTGCCTCCCA 57.398 30.769 0.00 0.00 31.34 4.37
615 616 6.530019 AACAACTTTATTATTGCCTCCCAG 57.470 37.500 0.00 0.00 0.00 4.45
616 617 5.580022 ACAACTTTATTATTGCCTCCCAGT 58.420 37.500 0.00 0.00 0.00 4.00
617 618 5.652452 ACAACTTTATTATTGCCTCCCAGTC 59.348 40.000 0.00 0.00 0.00 3.51
618 619 5.450818 ACTTTATTATTGCCTCCCAGTCA 57.549 39.130 0.00 0.00 0.00 3.41
619 620 5.826643 ACTTTATTATTGCCTCCCAGTCAA 58.173 37.500 0.00 0.00 0.00 3.18
620 621 6.252995 ACTTTATTATTGCCTCCCAGTCAAA 58.747 36.000 0.00 0.00 0.00 2.69
621 622 6.723977 ACTTTATTATTGCCTCCCAGTCAAAA 59.276 34.615 0.00 0.00 0.00 2.44
622 623 7.234577 ACTTTATTATTGCCTCCCAGTCAAAAA 59.765 33.333 0.00 0.00 0.00 1.94
660 661 0.888619 TCATGTCTCGCCTCTTCGTT 59.111 50.000 0.00 0.00 0.00 3.85
801 807 1.517832 CCAGATTCGAAGACGGCCT 59.482 57.895 3.35 0.00 40.21 5.19
1015 1027 1.451927 GTGATGATTCAGGGGCGCA 60.452 57.895 10.83 0.00 30.85 6.09
1032 1044 1.144969 GCAATTCCGACGACTGTCAA 58.855 50.000 8.73 0.00 45.80 3.18
1040 1381 1.004277 GACGACTGTCAAGTGAGCCG 61.004 60.000 8.73 0.00 44.82 5.52
1105 1816 8.757877 CCCTGGTTAATTGATTTTGGATTTCTA 58.242 33.333 0.00 0.00 0.00 2.10
1154 2169 0.187117 TTGGGCCAGATTGGTTGTCA 59.813 50.000 6.23 0.00 40.46 3.58
1177 2192 6.384015 TCACACTCATCAATCTATGGGTAAGT 59.616 38.462 0.00 0.00 38.54 2.24
1191 2206 2.224354 GGGTAAGTCTCGTTTTGACCCA 60.224 50.000 2.27 0.00 43.84 4.51
1198 2213 2.610374 TCTCGTTTTGACCCAGTTTTCG 59.390 45.455 0.00 0.00 0.00 3.46
1311 2422 6.484364 TGTCTGCTCATTGTTGGATCTATA 57.516 37.500 0.00 0.00 0.00 1.31
1384 4278 7.386851 TCCTTCTATCTACTGTTGTTCCTTTG 58.613 38.462 0.00 0.00 0.00 2.77
1385 4279 6.092807 CCTTCTATCTACTGTTGTTCCTTTGC 59.907 42.308 0.00 0.00 0.00 3.68
1386 4280 6.109156 TCTATCTACTGTTGTTCCTTTGCA 57.891 37.500 0.00 0.00 0.00 4.08
1388 4282 5.633830 ATCTACTGTTGTTCCTTTGCATG 57.366 39.130 0.00 0.00 0.00 4.06
1393 4287 4.275936 ACTGTTGTTCCTTTGCATGTCTAC 59.724 41.667 0.00 0.00 0.00 2.59
1397 4291 3.249799 TGTTCCTTTGCATGTCTACGTTG 59.750 43.478 0.00 0.00 0.00 4.10
1417 4311 1.342555 GTGCTCGTGTGCGTGTATAA 58.657 50.000 0.00 0.00 39.49 0.98
1429 4394 4.963953 GTGCGTGTATAATTGATGTTGAGC 59.036 41.667 0.00 0.00 0.00 4.26
1466 4431 3.860641 TGTCGTTCATGTAGATGTGCAT 58.139 40.909 0.00 0.00 0.00 3.96
1483 4448 4.214119 TGTGCATAGAGTGTCTTTCTTTGC 59.786 41.667 9.68 9.68 44.61 3.68
1487 4452 5.390356 GCATAGAGTGTCTTTCTTTGCTGTC 60.390 44.000 9.44 0.00 42.56 3.51
1517 4533 4.139038 GGTGGAGACAGAGAGTACTATCC 58.861 52.174 13.82 0.00 44.46 2.59
1572 4689 7.148490 CCCTTTTTGTTTCTTTGTGGTTTACAG 60.148 37.037 0.00 0.00 41.10 2.74
1592 4709 0.807496 GAGTGTGCTTTGGCTGGATC 59.193 55.000 0.00 0.00 39.59 3.36
1602 4719 1.241485 TGGCTGGATCCTACTAGGGA 58.759 55.000 14.23 0.00 39.95 4.20
1608 4725 4.693420 CTGGATCCTACTAGGGATGGAAT 58.307 47.826 14.23 0.00 45.18 3.01
1692 4910 1.055849 TGGCCTACTGATGTGTGTGT 58.944 50.000 3.32 0.00 0.00 3.72
1725 4943 2.171448 GTCCTATGTCATTCCAGTGGCT 59.829 50.000 3.51 0.00 0.00 4.75
1742 4960 4.072131 GTGGCTTCAGTTTGTGAGGATTA 58.928 43.478 0.00 0.00 36.21 1.75
1749 4967 8.677300 GCTTCAGTTTGTGAGGATTAAATGATA 58.323 33.333 0.00 0.00 36.21 2.15
1751 4969 8.213518 TCAGTTTGTGAGGATTAAATGATAGC 57.786 34.615 0.00 0.00 0.00 2.97
1752 4970 7.283127 TCAGTTTGTGAGGATTAAATGATAGCC 59.717 37.037 0.00 0.00 0.00 3.93
1753 4971 6.547510 AGTTTGTGAGGATTAAATGATAGCCC 59.452 38.462 0.00 0.00 0.00 5.19
1754 4972 4.985538 TGTGAGGATTAAATGATAGCCCC 58.014 43.478 0.00 0.00 0.00 5.80
1755 4973 4.665009 TGTGAGGATTAAATGATAGCCCCT 59.335 41.667 0.00 0.00 0.00 4.79
1756 4974 5.221925 TGTGAGGATTAAATGATAGCCCCTC 60.222 44.000 0.00 0.00 39.38 4.30
1757 4975 5.013599 GTGAGGATTAAATGATAGCCCCTCT 59.986 44.000 0.00 0.00 39.58 3.69
1758 4976 5.249393 TGAGGATTAAATGATAGCCCCTCTC 59.751 44.000 0.00 0.00 39.58 3.20
1759 4977 4.538089 AGGATTAAATGATAGCCCCTCTCC 59.462 45.833 0.00 0.00 0.00 3.71
1760 4978 4.538089 GGATTAAATGATAGCCCCTCTCCT 59.462 45.833 0.00 0.00 0.00 3.69
1761 4979 4.982241 TTAAATGATAGCCCCTCTCCTG 57.018 45.455 0.00 0.00 0.00 3.86
1762 4980 2.803285 AATGATAGCCCCTCTCCTGA 57.197 50.000 0.00 0.00 0.00 3.86
1763 4981 3.288454 AATGATAGCCCCTCTCCTGAT 57.712 47.619 0.00 0.00 0.00 2.90
1764 4982 2.317371 TGATAGCCCCTCTCCTGATC 57.683 55.000 0.00 0.00 0.00 2.92
1765 4983 1.203237 TGATAGCCCCTCTCCTGATCC 60.203 57.143 0.00 0.00 0.00 3.36
1766 4984 0.252012 ATAGCCCCTCTCCTGATCCG 60.252 60.000 0.00 0.00 0.00 4.18
1767 4985 1.656092 TAGCCCCTCTCCTGATCCGT 61.656 60.000 0.00 0.00 0.00 4.69
1768 4986 2.066999 GCCCCTCTCCTGATCCGTT 61.067 63.158 0.00 0.00 0.00 4.44
1769 4987 2.034048 GCCCCTCTCCTGATCCGTTC 62.034 65.000 0.00 0.00 0.00 3.95
1770 4988 1.403687 CCCCTCTCCTGATCCGTTCC 61.404 65.000 0.00 0.00 0.00 3.62
1771 4989 0.397816 CCCTCTCCTGATCCGTTCCT 60.398 60.000 0.00 0.00 0.00 3.36
1772 4990 1.490574 CCTCTCCTGATCCGTTCCTT 58.509 55.000 0.00 0.00 0.00 3.36
1773 4991 1.834263 CCTCTCCTGATCCGTTCCTTT 59.166 52.381 0.00 0.00 0.00 3.11
1774 4992 2.419297 CCTCTCCTGATCCGTTCCTTTG 60.419 54.545 0.00 0.00 0.00 2.77
1775 4993 1.555075 TCTCCTGATCCGTTCCTTTGG 59.445 52.381 0.00 0.00 0.00 3.28
1776 4994 1.279271 CTCCTGATCCGTTCCTTTGGT 59.721 52.381 0.00 0.00 0.00 3.67
1777 4995 1.702957 TCCTGATCCGTTCCTTTGGTT 59.297 47.619 0.00 0.00 0.00 3.67
1778 4996 1.812571 CCTGATCCGTTCCTTTGGTTG 59.187 52.381 0.00 0.00 0.00 3.77
1779 4997 2.504367 CTGATCCGTTCCTTTGGTTGT 58.496 47.619 0.00 0.00 0.00 3.32
1780 4998 2.884639 CTGATCCGTTCCTTTGGTTGTT 59.115 45.455 0.00 0.00 0.00 2.83
1781 4999 2.621055 TGATCCGTTCCTTTGGTTGTTG 59.379 45.455 0.00 0.00 0.00 3.33
1782 5000 0.741915 TCCGTTCCTTTGGTTGTTGC 59.258 50.000 0.00 0.00 0.00 4.17
1783 5001 0.593773 CCGTTCCTTTGGTTGTTGCG 60.594 55.000 0.00 0.00 0.00 4.85
1784 5002 0.099791 CGTTCCTTTGGTTGTTGCGT 59.900 50.000 0.00 0.00 0.00 5.24
1785 5003 1.468395 CGTTCCTTTGGTTGTTGCGTT 60.468 47.619 0.00 0.00 0.00 4.84
1786 5004 1.923864 GTTCCTTTGGTTGTTGCGTTG 59.076 47.619 0.00 0.00 0.00 4.10
1787 5005 1.178276 TCCTTTGGTTGTTGCGTTGT 58.822 45.000 0.00 0.00 0.00 3.32
1788 5006 1.133407 TCCTTTGGTTGTTGCGTTGTC 59.867 47.619 0.00 0.00 0.00 3.18
1789 5007 1.134175 CCTTTGGTTGTTGCGTTGTCT 59.866 47.619 0.00 0.00 0.00 3.41
1790 5008 2.450160 CTTTGGTTGTTGCGTTGTCTC 58.550 47.619 0.00 0.00 0.00 3.36
1791 5009 1.745232 TTGGTTGTTGCGTTGTCTCT 58.255 45.000 0.00 0.00 0.00 3.10
1792 5010 1.295792 TGGTTGTTGCGTTGTCTCTC 58.704 50.000 0.00 0.00 0.00 3.20
1793 5011 0.232303 GGTTGTTGCGTTGTCTCTCG 59.768 55.000 0.00 0.00 0.00 4.04
1798 5016 3.173240 GCGTTGTCTCTCGCCGTC 61.173 66.667 0.00 0.00 45.54 4.79
1799 5017 2.870161 CGTTGTCTCTCGCCGTCG 60.870 66.667 0.00 0.00 0.00 5.12
1800 5018 2.254651 GTTGTCTCTCGCCGTCGT 59.745 61.111 0.00 0.00 36.96 4.34
1801 5019 1.796749 GTTGTCTCTCGCCGTCGTC 60.797 63.158 0.00 0.00 36.96 4.20
1802 5020 1.964891 TTGTCTCTCGCCGTCGTCT 60.965 57.895 0.00 0.00 36.96 4.18
1803 5021 2.098680 GTCTCTCGCCGTCGTCTG 59.901 66.667 0.00 0.00 36.96 3.51
1804 5022 3.125573 TCTCTCGCCGTCGTCTGG 61.126 66.667 0.00 0.00 36.96 3.86
1805 5023 3.125573 CTCTCGCCGTCGTCTGGA 61.126 66.667 0.00 0.00 36.96 3.86
1806 5024 3.384014 CTCTCGCCGTCGTCTGGAC 62.384 68.421 0.00 0.00 42.48 4.02
1807 5025 3.432588 CTCGCCGTCGTCTGGACT 61.433 66.667 0.00 0.00 43.79 3.85
1808 5026 3.669036 CTCGCCGTCGTCTGGACTG 62.669 68.421 0.00 0.00 43.79 3.51
1811 5029 4.436998 CCGTCGTCTGGACTGCCC 62.437 72.222 0.00 0.00 43.79 5.36
1812 5030 4.436998 CGTCGTCTGGACTGCCCC 62.437 72.222 0.00 0.00 43.79 5.80
1813 5031 2.997897 GTCGTCTGGACTGCCCCT 60.998 66.667 0.00 0.00 42.62 4.79
1814 5032 2.680352 TCGTCTGGACTGCCCCTC 60.680 66.667 0.00 0.00 0.00 4.30
1815 5033 3.775654 CGTCTGGACTGCCCCTCC 61.776 72.222 0.00 0.00 0.00 4.30
1816 5034 2.607750 GTCTGGACTGCCCCTCCA 60.608 66.667 0.00 0.00 36.34 3.86
1817 5035 1.997874 GTCTGGACTGCCCCTCCAT 60.998 63.158 0.00 0.00 37.18 3.41
1818 5036 1.997311 TCTGGACTGCCCCTCCATG 60.997 63.158 0.00 0.00 37.18 3.66
1819 5037 3.711059 CTGGACTGCCCCTCCATGC 62.711 68.421 0.00 0.00 37.18 4.06
1820 5038 3.415087 GGACTGCCCCTCCATGCT 61.415 66.667 0.00 0.00 0.00 3.79
1821 5039 2.191641 GACTGCCCCTCCATGCTC 59.808 66.667 0.00 0.00 0.00 4.26
1822 5040 3.412624 GACTGCCCCTCCATGCTCC 62.413 68.421 0.00 0.00 0.00 4.70
1823 5041 4.201122 CTGCCCCTCCATGCTCCC 62.201 72.222 0.00 0.00 0.00 4.30
1825 5043 3.505773 GCCCCTCCATGCTCCCAT 61.506 66.667 0.00 0.00 0.00 4.00
1826 5044 2.519441 CCCCTCCATGCTCCCATG 59.481 66.667 0.00 0.00 46.70 3.66
1827 5045 2.203451 CCCTCCATGCTCCCATGC 60.203 66.667 0.00 0.00 45.97 4.06
1828 5046 2.203451 CCTCCATGCTCCCATGCC 60.203 66.667 0.00 0.00 45.97 4.40
1829 5047 2.203451 CTCCATGCTCCCATGCCC 60.203 66.667 0.00 0.00 45.97 5.36
1830 5048 3.022497 TCCATGCTCCCATGCCCA 61.022 61.111 0.00 0.00 45.97 5.36
1831 5049 2.836360 CCATGCTCCCATGCCCAC 60.836 66.667 0.00 0.00 45.97 4.61
1832 5050 2.836360 CATGCTCCCATGCCCACC 60.836 66.667 0.00 0.00 42.08 4.61
1833 5051 4.147587 ATGCTCCCATGCCCACCC 62.148 66.667 0.00 0.00 0.00 4.61
1835 5053 4.512914 GCTCCCATGCCCACCCTC 62.513 72.222 0.00 0.00 0.00 4.30
1836 5054 3.813724 CTCCCATGCCCACCCTCC 61.814 72.222 0.00 0.00 0.00 4.30
1837 5055 4.369591 TCCCATGCCCACCCTCCT 62.370 66.667 0.00 0.00 0.00 3.69
1838 5056 2.368192 CCCATGCCCACCCTCCTA 60.368 66.667 0.00 0.00 0.00 2.94
1839 5057 2.757124 CCCATGCCCACCCTCCTAC 61.757 68.421 0.00 0.00 0.00 3.18
1840 5058 2.000701 CCATGCCCACCCTCCTACA 61.001 63.158 0.00 0.00 0.00 2.74
1841 5059 1.355718 CCATGCCCACCCTCCTACAT 61.356 60.000 0.00 0.00 0.00 2.29
1842 5060 0.552848 CATGCCCACCCTCCTACATT 59.447 55.000 0.00 0.00 0.00 2.71
1843 5061 1.063717 CATGCCCACCCTCCTACATTT 60.064 52.381 0.00 0.00 0.00 2.32
1844 5062 0.623723 TGCCCACCCTCCTACATTTC 59.376 55.000 0.00 0.00 0.00 2.17
1845 5063 0.919710 GCCCACCCTCCTACATTTCT 59.080 55.000 0.00 0.00 0.00 2.52
1846 5064 1.285078 GCCCACCCTCCTACATTTCTT 59.715 52.381 0.00 0.00 0.00 2.52
1847 5065 2.291605 GCCCACCCTCCTACATTTCTTT 60.292 50.000 0.00 0.00 0.00 2.52
1848 5066 3.817931 GCCCACCCTCCTACATTTCTTTT 60.818 47.826 0.00 0.00 0.00 2.27
1849 5067 4.017126 CCCACCCTCCTACATTTCTTTTC 58.983 47.826 0.00 0.00 0.00 2.29
1850 5068 4.017126 CCACCCTCCTACATTTCTTTTCC 58.983 47.826 0.00 0.00 0.00 3.13
1851 5069 4.017126 CACCCTCCTACATTTCTTTTCCC 58.983 47.826 0.00 0.00 0.00 3.97
1852 5070 3.923425 ACCCTCCTACATTTCTTTTCCCT 59.077 43.478 0.00 0.00 0.00 4.20
1853 5071 4.018324 ACCCTCCTACATTTCTTTTCCCTC 60.018 45.833 0.00 0.00 0.00 4.30
1854 5072 4.018415 CCCTCCTACATTTCTTTTCCCTCA 60.018 45.833 0.00 0.00 0.00 3.86
1855 5073 4.944317 CCTCCTACATTTCTTTTCCCTCAC 59.056 45.833 0.00 0.00 0.00 3.51
1856 5074 5.280727 CCTCCTACATTTCTTTTCCCTCACT 60.281 44.000 0.00 0.00 0.00 3.41
1857 5075 5.560724 TCCTACATTTCTTTTCCCTCACTG 58.439 41.667 0.00 0.00 0.00 3.66
1858 5076 5.309543 TCCTACATTTCTTTTCCCTCACTGA 59.690 40.000 0.00 0.00 0.00 3.41
1859 5077 5.645497 CCTACATTTCTTTTCCCTCACTGAG 59.355 44.000 0.00 0.00 0.00 3.35
1860 5078 3.823304 ACATTTCTTTTCCCTCACTGAGC 59.177 43.478 0.00 0.00 0.00 4.26
1861 5079 3.864789 TTTCTTTTCCCTCACTGAGCT 57.135 42.857 0.00 0.00 0.00 4.09
1862 5080 3.409026 TTCTTTTCCCTCACTGAGCTC 57.591 47.619 6.82 6.82 0.00 4.09
1863 5081 1.273606 TCTTTTCCCTCACTGAGCTCG 59.726 52.381 9.64 6.63 0.00 5.03
1864 5082 0.320771 TTTTCCCTCACTGAGCTCGC 60.321 55.000 9.64 0.00 0.00 5.03
1865 5083 2.492449 TTTCCCTCACTGAGCTCGCG 62.492 60.000 9.64 0.00 0.00 5.87
1866 5084 3.753434 CCCTCACTGAGCTCGCGT 61.753 66.667 9.64 5.92 0.00 6.01
1867 5085 2.202544 CCTCACTGAGCTCGCGTC 60.203 66.667 9.64 0.00 0.00 5.19
1868 5086 2.575525 CTCACTGAGCTCGCGTCG 60.576 66.667 9.64 0.00 0.00 5.12
1869 5087 3.315769 CTCACTGAGCTCGCGTCGT 62.316 63.158 9.64 0.00 0.00 4.34
1870 5088 2.429236 CACTGAGCTCGCGTCGTT 60.429 61.111 9.64 0.00 0.00 3.85
1871 5089 2.429236 ACTGAGCTCGCGTCGTTG 60.429 61.111 9.64 0.00 0.00 4.10
1872 5090 3.832171 CTGAGCTCGCGTCGTTGC 61.832 66.667 9.64 4.37 0.00 4.17
1873 5091 4.342987 TGAGCTCGCGTCGTTGCT 62.343 61.111 9.64 9.41 39.27 3.91
1874 5092 3.832171 GAGCTCGCGTCGTTGCTG 61.832 66.667 5.77 0.00 37.68 4.41
1875 5093 4.647615 AGCTCGCGTCGTTGCTGT 62.648 61.111 5.77 0.00 36.76 4.40
1876 5094 4.415501 GCTCGCGTCGTTGCTGTG 62.416 66.667 5.77 0.00 0.00 3.66
1877 5095 3.767230 CTCGCGTCGTTGCTGTGG 61.767 66.667 5.77 0.00 0.00 4.17
1887 5105 4.687215 TGCTGTGGCACGCCTCTC 62.687 66.667 24.18 7.53 44.28 3.20
1888 5106 4.385405 GCTGTGGCACGCCTCTCT 62.385 66.667 19.10 0.00 38.60 3.10
1889 5107 2.345244 CTGTGGCACGCCTCTCTT 59.655 61.111 13.77 0.00 38.60 2.85
1890 5108 1.302033 CTGTGGCACGCCTCTCTTT 60.302 57.895 13.77 0.00 38.60 2.52
1891 5109 1.572085 CTGTGGCACGCCTCTCTTTG 61.572 60.000 13.77 0.00 38.60 2.77
1892 5110 2.669569 TGGCACGCCTCTCTTTGC 60.670 61.111 9.92 0.00 36.94 3.68
1893 5111 2.669569 GGCACGCCTCTCTTTGCA 60.670 61.111 0.00 0.00 36.66 4.08
1894 5112 2.684843 GGCACGCCTCTCTTTGCAG 61.685 63.158 0.00 0.00 36.66 4.41
1895 5113 2.866028 CACGCCTCTCTTTGCAGC 59.134 61.111 0.00 0.00 0.00 5.25
1896 5114 2.359230 ACGCCTCTCTTTGCAGCC 60.359 61.111 0.00 0.00 0.00 4.85
1897 5115 3.494336 CGCCTCTCTTTGCAGCCG 61.494 66.667 0.00 0.00 0.00 5.52
1898 5116 3.808656 GCCTCTCTTTGCAGCCGC 61.809 66.667 0.00 0.00 39.24 6.53
1899 5117 3.130160 CCTCTCTTTGCAGCCGCC 61.130 66.667 0.00 0.00 37.32 6.13
1900 5118 2.046507 CTCTCTTTGCAGCCGCCT 60.047 61.111 0.00 0.00 37.32 5.52
1901 5119 2.359107 TCTCTTTGCAGCCGCCTG 60.359 61.111 0.00 0.00 42.13 4.85
1902 5120 2.670934 CTCTTTGCAGCCGCCTGT 60.671 61.111 0.00 0.00 41.26 4.00
1903 5121 2.669569 TCTTTGCAGCCGCCTGTC 60.670 61.111 0.00 0.00 41.26 3.51
1904 5122 4.093952 CTTTGCAGCCGCCTGTCG 62.094 66.667 0.00 0.00 41.26 4.35
1905 5123 4.617520 TTTGCAGCCGCCTGTCGA 62.618 61.111 0.00 0.00 41.26 4.20
1909 5127 4.363990 CAGCCGCCTGTCGACAGT 62.364 66.667 36.37 20.09 42.27 3.55
1910 5128 4.363990 AGCCGCCTGTCGACAGTG 62.364 66.667 36.37 28.87 42.27 3.66
1911 5129 4.664677 GCCGCCTGTCGACAGTGT 62.665 66.667 36.37 0.00 42.27 3.55
1912 5130 2.734723 CCGCCTGTCGACAGTGTG 60.735 66.667 36.37 31.10 42.27 3.82
1913 5131 2.027605 CGCCTGTCGACAGTGTGT 59.972 61.111 36.37 0.00 42.27 3.72
1914 5132 2.302952 CGCCTGTCGACAGTGTGTG 61.303 63.158 36.37 25.88 42.27 3.82
1915 5133 2.598632 GCCTGTCGACAGTGTGTGC 61.599 63.158 36.37 29.03 42.27 4.57
1916 5134 1.956170 CCTGTCGACAGTGTGTGCC 60.956 63.158 36.37 0.00 42.27 5.01
1917 5135 2.279186 TGTCGACAGTGTGTGCCG 60.279 61.111 15.76 0.00 0.00 5.69
1918 5136 3.702555 GTCGACAGTGTGTGCCGC 61.703 66.667 11.55 0.00 0.00 6.53
1919 5137 4.961511 TCGACAGTGTGTGCCGCC 62.962 66.667 0.00 0.00 0.00 6.13
1935 5153 3.294493 CCCGCCACCACCAACAAG 61.294 66.667 0.00 0.00 0.00 3.16
1936 5154 2.203280 CCGCCACCACCAACAAGA 60.203 61.111 0.00 0.00 0.00 3.02
1937 5155 1.603455 CCGCCACCACCAACAAGAT 60.603 57.895 0.00 0.00 0.00 2.40
1938 5156 0.322098 CCGCCACCACCAACAAGATA 60.322 55.000 0.00 0.00 0.00 1.98
1939 5157 1.681780 CCGCCACCACCAACAAGATAT 60.682 52.381 0.00 0.00 0.00 1.63
1940 5158 1.401552 CGCCACCACCAACAAGATATG 59.598 52.381 0.00 0.00 0.00 1.78
1941 5159 1.750778 GCCACCACCAACAAGATATGG 59.249 52.381 0.00 0.00 42.60 2.74
1942 5160 2.378038 CCACCACCAACAAGATATGGG 58.622 52.381 0.00 0.00 41.17 4.00
1943 5161 2.025416 CCACCACCAACAAGATATGGGA 60.025 50.000 0.00 0.00 41.17 4.37
1944 5162 3.282021 CACCACCAACAAGATATGGGAG 58.718 50.000 0.00 0.00 41.17 4.30
1945 5163 3.054434 CACCACCAACAAGATATGGGAGA 60.054 47.826 0.00 0.00 41.17 3.71
1946 5164 3.591527 ACCACCAACAAGATATGGGAGAA 59.408 43.478 0.00 0.00 41.17 2.87
1947 5165 4.044065 ACCACCAACAAGATATGGGAGAAA 59.956 41.667 0.00 0.00 41.17 2.52
1948 5166 4.641989 CCACCAACAAGATATGGGAGAAAG 59.358 45.833 0.00 0.00 41.17 2.62
1949 5167 5.500234 CACCAACAAGATATGGGAGAAAGA 58.500 41.667 0.00 0.00 41.17 2.52
1950 5168 5.587844 CACCAACAAGATATGGGAGAAAGAG 59.412 44.000 0.00 0.00 41.17 2.85
1951 5169 5.251700 ACCAACAAGATATGGGAGAAAGAGT 59.748 40.000 0.00 0.00 41.17 3.24
1952 5170 6.183347 CCAACAAGATATGGGAGAAAGAGTT 58.817 40.000 0.00 0.00 32.87 3.01
1953 5171 6.094603 CCAACAAGATATGGGAGAAAGAGTTG 59.905 42.308 0.00 0.00 32.87 3.16
1954 5172 5.749462 ACAAGATATGGGAGAAAGAGTTGG 58.251 41.667 0.00 0.00 0.00 3.77
1955 5173 5.488919 ACAAGATATGGGAGAAAGAGTTGGA 59.511 40.000 0.00 0.00 0.00 3.53
1956 5174 5.885449 AGATATGGGAGAAAGAGTTGGAG 57.115 43.478 0.00 0.00 0.00 3.86
1957 5175 4.657969 AGATATGGGAGAAAGAGTTGGAGG 59.342 45.833 0.00 0.00 0.00 4.30
1958 5176 2.118403 TGGGAGAAAGAGTTGGAGGT 57.882 50.000 0.00 0.00 0.00 3.85
1959 5177 3.269592 TGGGAGAAAGAGTTGGAGGTA 57.730 47.619 0.00 0.00 0.00 3.08
1960 5178 3.173965 TGGGAGAAAGAGTTGGAGGTAG 58.826 50.000 0.00 0.00 0.00 3.18
1961 5179 3.181410 TGGGAGAAAGAGTTGGAGGTAGA 60.181 47.826 0.00 0.00 0.00 2.59
1962 5180 3.449377 GGGAGAAAGAGTTGGAGGTAGAG 59.551 52.174 0.00 0.00 0.00 2.43
1963 5181 3.449377 GGAGAAAGAGTTGGAGGTAGAGG 59.551 52.174 0.00 0.00 0.00 3.69
1964 5182 3.445987 AGAAAGAGTTGGAGGTAGAGGG 58.554 50.000 0.00 0.00 0.00 4.30
1965 5183 3.077695 AGAAAGAGTTGGAGGTAGAGGGA 59.922 47.826 0.00 0.00 0.00 4.20
1966 5184 2.838637 AGAGTTGGAGGTAGAGGGAG 57.161 55.000 0.00 0.00 0.00 4.30
1967 5185 2.289467 AGAGTTGGAGGTAGAGGGAGA 58.711 52.381 0.00 0.00 0.00 3.71
1968 5186 2.862597 AGAGTTGGAGGTAGAGGGAGAT 59.137 50.000 0.00 0.00 0.00 2.75
1969 5187 2.962421 GAGTTGGAGGTAGAGGGAGATG 59.038 54.545 0.00 0.00 0.00 2.90
1970 5188 2.043227 GTTGGAGGTAGAGGGAGATGG 58.957 57.143 0.00 0.00 0.00 3.51
1971 5189 0.563173 TGGAGGTAGAGGGAGATGGG 59.437 60.000 0.00 0.00 0.00 4.00
1972 5190 0.178918 GGAGGTAGAGGGAGATGGGG 60.179 65.000 0.00 0.00 0.00 4.96
1973 5191 0.563672 GAGGTAGAGGGAGATGGGGT 59.436 60.000 0.00 0.00 0.00 4.95
1974 5192 0.266152 AGGTAGAGGGAGATGGGGTG 59.734 60.000 0.00 0.00 0.00 4.61
1975 5193 0.764752 GGTAGAGGGAGATGGGGTGG 60.765 65.000 0.00 0.00 0.00 4.61
1976 5194 0.031010 GTAGAGGGAGATGGGGTGGT 60.031 60.000 0.00 0.00 0.00 4.16
1977 5195 1.219724 GTAGAGGGAGATGGGGTGGTA 59.780 57.143 0.00 0.00 0.00 3.25
1978 5196 0.722676 AGAGGGAGATGGGGTGGTAA 59.277 55.000 0.00 0.00 0.00 2.85
1979 5197 1.132500 GAGGGAGATGGGGTGGTAAG 58.868 60.000 0.00 0.00 0.00 2.34
1980 5198 0.722676 AGGGAGATGGGGTGGTAAGA 59.277 55.000 0.00 0.00 0.00 2.10
1981 5199 1.082194 AGGGAGATGGGGTGGTAAGAA 59.918 52.381 0.00 0.00 0.00 2.52
1982 5200 1.490910 GGGAGATGGGGTGGTAAGAAG 59.509 57.143 0.00 0.00 0.00 2.85
1983 5201 2.478292 GGAGATGGGGTGGTAAGAAGA 58.522 52.381 0.00 0.00 0.00 2.87
1984 5202 2.436173 GGAGATGGGGTGGTAAGAAGAG 59.564 54.545 0.00 0.00 0.00 2.85
1985 5203 3.375699 GAGATGGGGTGGTAAGAAGAGA 58.624 50.000 0.00 0.00 0.00 3.10
1986 5204 3.379452 AGATGGGGTGGTAAGAAGAGAG 58.621 50.000 0.00 0.00 0.00 3.20
1987 5205 1.952621 TGGGGTGGTAAGAAGAGAGG 58.047 55.000 0.00 0.00 0.00 3.69
1988 5206 1.205055 GGGGTGGTAAGAAGAGAGGG 58.795 60.000 0.00 0.00 0.00 4.30
1989 5207 1.555058 GGGGTGGTAAGAAGAGAGGGT 60.555 57.143 0.00 0.00 0.00 4.34
1990 5208 1.555533 GGGTGGTAAGAAGAGAGGGTG 59.444 57.143 0.00 0.00 0.00 4.61
1991 5209 2.537143 GGTGGTAAGAAGAGAGGGTGA 58.463 52.381 0.00 0.00 0.00 4.02
1992 5210 2.498078 GGTGGTAAGAAGAGAGGGTGAG 59.502 54.545 0.00 0.00 0.00 3.51
1993 5211 2.498078 GTGGTAAGAAGAGAGGGTGAGG 59.502 54.545 0.00 0.00 0.00 3.86
1994 5212 2.382305 TGGTAAGAAGAGAGGGTGAGGA 59.618 50.000 0.00 0.00 0.00 3.71
1995 5213 3.181410 TGGTAAGAAGAGAGGGTGAGGAA 60.181 47.826 0.00 0.00 0.00 3.36
1996 5214 3.449377 GGTAAGAAGAGAGGGTGAGGAAG 59.551 52.174 0.00 0.00 0.00 3.46
1997 5215 2.246091 AGAAGAGAGGGTGAGGAAGG 57.754 55.000 0.00 0.00 0.00 3.46
1998 5216 1.719378 AGAAGAGAGGGTGAGGAAGGA 59.281 52.381 0.00 0.00 0.00 3.36
1999 5217 2.107366 GAAGAGAGGGTGAGGAAGGAG 58.893 57.143 0.00 0.00 0.00 3.69
2000 5218 0.338120 AGAGAGGGTGAGGAAGGAGG 59.662 60.000 0.00 0.00 0.00 4.30
2001 5219 0.336737 GAGAGGGTGAGGAAGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
2002 5220 0.793617 AGAGGGTGAGGAAGGAGGAA 59.206 55.000 0.00 0.00 0.00 3.36
2003 5221 1.199615 GAGGGTGAGGAAGGAGGAAG 58.800 60.000 0.00 0.00 0.00 3.46
2004 5222 0.494095 AGGGTGAGGAAGGAGGAAGT 59.506 55.000 0.00 0.00 0.00 3.01
2005 5223 0.615850 GGGTGAGGAAGGAGGAAGTG 59.384 60.000 0.00 0.00 0.00 3.16
2006 5224 0.615850 GGTGAGGAAGGAGGAAGTGG 59.384 60.000 0.00 0.00 0.00 4.00
2007 5225 1.645710 GTGAGGAAGGAGGAAGTGGA 58.354 55.000 0.00 0.00 0.00 4.02
2008 5226 2.192263 GTGAGGAAGGAGGAAGTGGAT 58.808 52.381 0.00 0.00 0.00 3.41
2009 5227 3.375699 GTGAGGAAGGAGGAAGTGGATA 58.624 50.000 0.00 0.00 0.00 2.59
2010 5228 3.970640 GTGAGGAAGGAGGAAGTGGATAT 59.029 47.826 0.00 0.00 0.00 1.63
2011 5229 4.039852 GTGAGGAAGGAGGAAGTGGATATC 59.960 50.000 0.00 0.00 0.00 1.63
2012 5230 3.580895 GAGGAAGGAGGAAGTGGATATCC 59.419 52.174 15.39 15.39 35.88 2.59
2013 5231 2.640332 GGAAGGAGGAAGTGGATATCCC 59.360 54.545 19.34 10.37 36.31 3.85
2014 5232 2.424684 AGGAGGAAGTGGATATCCCC 57.575 55.000 19.34 12.49 36.31 4.81
2015 5233 1.132365 AGGAGGAAGTGGATATCCCCC 60.132 57.143 19.34 13.93 36.31 5.40
2016 5234 1.416013 GGAGGAAGTGGATATCCCCCA 60.416 57.143 19.34 0.00 33.95 4.96
2017 5235 1.981495 GAGGAAGTGGATATCCCCCAG 59.019 57.143 19.34 0.00 36.31 4.45
2018 5236 0.402121 GGAAGTGGATATCCCCCAGC 59.598 60.000 19.34 4.92 33.75 4.85
2019 5237 1.140312 GAAGTGGATATCCCCCAGCA 58.860 55.000 19.34 0.00 33.75 4.41
2020 5238 0.846693 AAGTGGATATCCCCCAGCAC 59.153 55.000 19.34 9.24 33.75 4.40
2021 5239 1.062488 AGTGGATATCCCCCAGCACC 61.062 60.000 19.34 0.00 33.75 5.01
2022 5240 1.774217 TGGATATCCCCCAGCACCC 60.774 63.158 19.34 0.00 34.29 4.61
2023 5241 1.774217 GGATATCCCCCAGCACCCA 60.774 63.158 11.02 0.00 0.00 4.51
2024 5242 1.142688 GGATATCCCCCAGCACCCAT 61.143 60.000 11.02 0.00 0.00 4.00
2025 5243 0.038744 GATATCCCCCAGCACCCATG 59.961 60.000 0.00 0.00 0.00 3.66
2026 5244 1.437849 ATATCCCCCAGCACCCATGG 61.438 60.000 4.14 4.14 37.58 3.66
2027 5245 2.874219 TATCCCCCAGCACCCATGGT 62.874 60.000 11.73 0.00 35.96 3.55
2045 5263 4.650377 GGGCGCCCAGATCCCATC 62.650 72.222 40.73 8.62 39.82 3.51
2046 5264 3.564218 GGCGCCCAGATCCCATCT 61.564 66.667 18.11 0.00 41.15 2.90
2047 5265 2.031768 GCGCCCAGATCCCATCTC 59.968 66.667 0.00 0.00 37.58 2.75
2048 5266 2.746359 CGCCCAGATCCCATCTCC 59.254 66.667 0.00 0.00 37.58 3.71
2049 5267 2.142761 CGCCCAGATCCCATCTCCA 61.143 63.158 0.00 0.00 37.58 3.86
2050 5268 1.453669 GCCCAGATCCCATCTCCAC 59.546 63.158 0.00 0.00 37.58 4.02
2051 5269 1.750930 CCCAGATCCCATCTCCACG 59.249 63.158 0.00 0.00 37.58 4.94
2052 5270 1.070445 CCAGATCCCATCTCCACGC 59.930 63.158 0.00 0.00 37.58 5.34
2053 5271 1.070445 CAGATCCCATCTCCACGCC 59.930 63.158 0.00 0.00 37.58 5.68
2054 5272 1.383109 AGATCCCATCTCCACGCCA 60.383 57.895 0.00 0.00 33.42 5.69
2055 5273 1.227674 GATCCCATCTCCACGCCAC 60.228 63.158 0.00 0.00 0.00 5.01
2056 5274 2.666596 GATCCCATCTCCACGCCACC 62.667 65.000 0.00 0.00 0.00 4.61
2057 5275 3.716195 CCCATCTCCACGCCACCA 61.716 66.667 0.00 0.00 0.00 4.17
2058 5276 2.436646 CCATCTCCACGCCACCAC 60.437 66.667 0.00 0.00 0.00 4.16
2059 5277 2.815211 CATCTCCACGCCACCACG 60.815 66.667 0.00 0.00 39.50 4.94
2060 5278 2.994995 ATCTCCACGCCACCACGA 60.995 61.111 0.00 0.00 36.70 4.35
2061 5279 3.006756 ATCTCCACGCCACCACGAG 62.007 63.158 0.00 0.00 36.70 4.18
2062 5280 4.742201 CTCCACGCCACCACGAGG 62.742 72.222 0.00 0.00 44.03 4.63
2076 5294 4.408182 CCACGAGGTATTCAGATCCTTT 57.592 45.455 0.00 0.00 0.00 3.11
2077 5295 4.122776 CCACGAGGTATTCAGATCCTTTG 58.877 47.826 0.00 0.00 0.00 2.77
2078 5296 3.557595 CACGAGGTATTCAGATCCTTTGC 59.442 47.826 0.00 0.00 0.00 3.68
2079 5297 3.452627 ACGAGGTATTCAGATCCTTTGCT 59.547 43.478 0.00 0.00 0.00 3.91
2080 5298 4.080863 ACGAGGTATTCAGATCCTTTGCTT 60.081 41.667 0.00 0.00 0.00 3.91
2081 5299 4.878397 CGAGGTATTCAGATCCTTTGCTTT 59.122 41.667 0.00 0.00 0.00 3.51
2082 5300 5.220739 CGAGGTATTCAGATCCTTTGCTTTG 60.221 44.000 0.00 0.00 0.00 2.77
2083 5301 4.400567 AGGTATTCAGATCCTTTGCTTTGC 59.599 41.667 0.00 0.00 0.00 3.68
2084 5302 4.158394 GGTATTCAGATCCTTTGCTTTGCA 59.842 41.667 0.00 0.00 36.47 4.08
2085 5303 3.648339 TTCAGATCCTTTGCTTTGCAC 57.352 42.857 0.00 0.00 38.71 4.57
2086 5304 1.888512 TCAGATCCTTTGCTTTGCACC 59.111 47.619 0.00 0.00 38.71 5.01
2087 5305 1.067354 CAGATCCTTTGCTTTGCACCC 60.067 52.381 0.00 0.00 38.71 4.61
2088 5306 0.968405 GATCCTTTGCTTTGCACCCA 59.032 50.000 0.00 0.00 38.71 4.51
2089 5307 0.681175 ATCCTTTGCTTTGCACCCAC 59.319 50.000 0.00 0.00 38.71 4.61
2090 5308 1.069596 CCTTTGCTTTGCACCCACC 59.930 57.895 0.00 0.00 38.71 4.61
2091 5309 1.684386 CCTTTGCTTTGCACCCACCA 61.684 55.000 0.00 0.00 38.71 4.17
2092 5310 0.177604 CTTTGCTTTGCACCCACCAA 59.822 50.000 0.00 0.00 38.71 3.67
2093 5311 0.107945 TTTGCTTTGCACCCACCAAC 60.108 50.000 0.00 0.00 38.71 3.77
2094 5312 1.965754 TTGCTTTGCACCCACCAACC 61.966 55.000 0.00 0.00 38.71 3.77
2095 5313 3.137687 CTTTGCACCCACCAACCC 58.862 61.111 0.00 0.00 0.00 4.11
2096 5314 1.457455 CTTTGCACCCACCAACCCT 60.457 57.895 0.00 0.00 0.00 4.34
2097 5315 1.456705 TTTGCACCCACCAACCCTC 60.457 57.895 0.00 0.00 0.00 4.30
2098 5316 2.937959 TTTGCACCCACCAACCCTCC 62.938 60.000 0.00 0.00 0.00 4.30
2099 5317 4.678743 GCACCCACCAACCCTCCC 62.679 72.222 0.00 0.00 0.00 4.30
2100 5318 3.979497 CACCCACCAACCCTCCCC 61.979 72.222 0.00 0.00 0.00 4.81
2103 5321 3.189646 CCACCAACCCTCCCCCAA 61.190 66.667 0.00 0.00 0.00 4.12
2104 5322 2.784654 CCACCAACCCTCCCCCAAA 61.785 63.158 0.00 0.00 0.00 3.28
2105 5323 1.469251 CACCAACCCTCCCCCAAAT 59.531 57.895 0.00 0.00 0.00 2.32
2106 5324 0.614697 CACCAACCCTCCCCCAAATC 60.615 60.000 0.00 0.00 0.00 2.17
2107 5325 1.001631 CCAACCCTCCCCCAAATCC 59.998 63.158 0.00 0.00 0.00 3.01
2108 5326 1.518431 CCAACCCTCCCCCAAATCCT 61.518 60.000 0.00 0.00 0.00 3.24
2109 5327 1.304891 CAACCCTCCCCCAAATCCTA 58.695 55.000 0.00 0.00 0.00 2.94
2110 5328 1.215423 CAACCCTCCCCCAAATCCTAG 59.785 57.143 0.00 0.00 0.00 3.02
2111 5329 0.426022 ACCCTCCCCCAAATCCTAGT 59.574 55.000 0.00 0.00 0.00 2.57
2112 5330 0.846693 CCCTCCCCCAAATCCTAGTG 59.153 60.000 0.00 0.00 0.00 2.74
2113 5331 0.183731 CCTCCCCCAAATCCTAGTGC 59.816 60.000 0.00 0.00 0.00 4.40
2114 5332 0.183731 CTCCCCCAAATCCTAGTGCC 59.816 60.000 0.00 0.00 0.00 5.01
2115 5333 0.253630 TCCCCCAAATCCTAGTGCCT 60.254 55.000 0.00 0.00 0.00 4.75
2116 5334 1.010294 TCCCCCAAATCCTAGTGCCTA 59.990 52.381 0.00 0.00 0.00 3.93
2117 5335 2.065799 CCCCCAAATCCTAGTGCCTAT 58.934 52.381 0.00 0.00 0.00 2.57
2118 5336 2.040412 CCCCCAAATCCTAGTGCCTATC 59.960 54.545 0.00 0.00 0.00 2.08
2119 5337 2.040412 CCCCAAATCCTAGTGCCTATCC 59.960 54.545 0.00 0.00 0.00 2.59
2128 5346 3.942748 CCTAGTGCCTATCCTCGTATCTC 59.057 52.174 0.00 0.00 0.00 2.75
2162 5380 6.127925 TGCAATTGATTGGTAGAACTGATGTC 60.128 38.462 10.34 0.00 38.21 3.06
2201 5419 7.532682 TTTCTGTAACAAAAGGAAATGTTGC 57.467 32.000 1.66 1.15 39.89 4.17
2203 5421 3.799420 TGTAACAAAAGGAAATGTTGCGC 59.201 39.130 0.00 0.00 42.67 6.09
2207 5425 0.318614 AAAGGAAATGTTGCGCCACG 60.319 50.000 4.18 0.00 0.00 4.94
2208 5426 1.452145 AAGGAAATGTTGCGCCACGT 61.452 50.000 4.18 1.59 0.00 4.49
2209 5427 1.729131 GGAAATGTTGCGCCACGTG 60.729 57.895 9.08 9.08 0.00 4.49
2222 5440 1.372582 CCACGTGTTCATCCATGAGG 58.627 55.000 15.65 0.00 38.19 3.86
2243 5461 5.360591 AGGACCGTCTATTCAGCTTTTATG 58.639 41.667 0.00 0.00 0.00 1.90
2303 5521 2.159462 GGTGCAGTCTTTCTATGCTTGC 60.159 50.000 0.00 0.00 40.62 4.01
2304 5522 2.485426 GTGCAGTCTTTCTATGCTTGCA 59.515 45.455 0.00 0.00 40.62 4.08
2318 5536 3.719924 TGCTTGCATTGCTAATATTGCC 58.280 40.909 10.49 0.00 34.20 4.52
2372 5590 6.377245 AAATGAATGTTGAATGGGGATGTT 57.623 33.333 0.00 0.00 0.00 2.71
2427 5646 1.663695 ATCCGTGCCCAATTTAGACG 58.336 50.000 0.00 0.00 0.00 4.18
2428 5647 1.022451 TCCGTGCCCAATTTAGACGC 61.022 55.000 0.00 0.00 0.00 5.19
2440 5659 6.198966 CCCAATTTAGACGCTGCAAATTAATC 59.801 38.462 0.00 0.00 32.18 1.75
2445 5664 4.202441 AGACGCTGCAAATTAATCTGGAT 58.798 39.130 0.00 0.00 0.00 3.41
2607 5826 0.250124 ATGCCGACGAACAGGTTCAA 60.250 50.000 12.22 0.00 39.46 2.69
2627 5846 7.538575 GTTCAACAACCTACATGCTTCATAAT 58.461 34.615 0.00 0.00 0.00 1.28
2628 5847 7.087409 TCAACAACCTACATGCTTCATAATG 57.913 36.000 0.00 0.00 0.00 1.90
2657 5876 8.517878 GTGCACCTTTATTCAGAATATATGCAT 58.482 33.333 21.84 3.79 40.01 3.96
2659 5878 7.487189 GCACCTTTATTCAGAATATATGCATGC 59.513 37.037 11.82 11.82 0.00 4.06
2666 5885 8.771920 ATTCAGAATATATGCATGCCATTTTG 57.228 30.769 16.68 13.67 35.34 2.44
2695 5914 7.099120 GCAGAACCAAAGGTTTATTCATCATT 58.901 34.615 2.55 0.00 46.95 2.57
2729 5948 0.108186 TGTGCAGGTGAGCGGATTAG 60.108 55.000 0.00 0.00 37.31 1.73
2731 5950 0.108186 TGCAGGTGAGCGGATTAGTG 60.108 55.000 0.00 0.00 37.31 2.74
2758 5977 5.738619 TGTGTTCAGTCCATACTACATGT 57.261 39.130 2.69 2.69 33.48 3.21
2761 5980 5.023452 TGTTCAGTCCATACTACATGTCCT 58.977 41.667 0.00 0.00 33.48 3.85
2824 6043 4.453819 GTCTGGATTGCAGGAGTTATATGC 59.546 45.833 5.27 0.00 40.40 3.14
2940 6180 4.930405 GTGCAGAAACTAAAGAGGGAGTAC 59.070 45.833 0.00 0.00 0.00 2.73
3159 6405 5.964758 TCATACCAATGTTGAATTGAAGCC 58.035 37.500 0.00 0.00 34.50 4.35
3254 6514 5.234972 CAGACAATTTCCCTGTTTCTTTTGC 59.765 40.000 0.00 0.00 0.00 3.68
3257 6517 1.770294 TTCCCTGTTTCTTTTGCGGT 58.230 45.000 0.00 0.00 0.00 5.68
3466 6742 3.191371 GCAAATGAAGGTTACTGGACAGG 59.809 47.826 4.14 0.00 0.00 4.00
3475 6751 1.583556 TACTGGACAGGCACATGGAT 58.416 50.000 4.14 0.00 0.00 3.41
3569 6845 2.887152 ACCACTTCCTTGCTGATTTCAC 59.113 45.455 0.00 0.00 0.00 3.18
3602 6878 8.465999 ACAGAATGCCATTTCGTTCAATATAAA 58.534 29.630 0.00 0.00 42.53 1.40
3684 6963 2.631545 ACCACTTGCGAGTTAGTACCTT 59.368 45.455 3.02 0.00 32.54 3.50
3698 6977 8.392372 AGTTAGTACCTTGGAAAATTGAAGAC 57.608 34.615 0.00 0.00 0.00 3.01
3714 6993 3.072476 TGAAGACAGTAGGTTGGGGAAAG 59.928 47.826 0.00 0.00 0.00 2.62
3724 7003 3.017442 GGTTGGGGAAAGCACTAGAATC 58.983 50.000 0.00 0.00 36.25 2.52
3729 7008 4.406003 TGGGGAAAGCACTAGAATCTCTAC 59.594 45.833 0.00 0.00 0.00 2.59
3766 7045 9.579932 AGCTGCTATACATACAGATATATGCTA 57.420 33.333 0.00 0.00 36.21 3.49
3832 7111 4.505922 ACACACACAAACAAACAAACACAG 59.494 37.500 0.00 0.00 0.00 3.66
3867 7146 5.130145 CCCCTCAAGATGGGTGATAGATATC 59.870 48.000 2.54 0.00 43.09 1.63
3900 7179 5.530171 CCATCTTGCTACATGCTGAATTACT 59.470 40.000 0.00 0.00 43.37 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 165 6.037062 CGATGATACTTGTTGAGTTGGCATAA 59.963 38.462 0.00 0.00 39.86 1.90
184 185 3.181443 TGCTCTATAGGTGTCTCCGATGA 60.181 47.826 0.00 0.00 41.99 2.92
485 486 7.233389 ACATAGACAAACAGAGTGTCACTAT 57.767 36.000 5.21 0.00 46.44 2.12
623 624 9.860898 GAGACATGAAGGCAATAATAAAGTTTT 57.139 29.630 0.00 0.00 0.00 2.43
624 625 8.184192 CGAGACATGAAGGCAATAATAAAGTTT 58.816 33.333 0.00 0.00 0.00 2.66
625 626 7.679638 GCGAGACATGAAGGCAATAATAAAGTT 60.680 37.037 0.00 0.00 0.00 2.66
626 627 6.238484 GCGAGACATGAAGGCAATAATAAAGT 60.238 38.462 0.00 0.00 0.00 2.66
627 628 6.138761 GCGAGACATGAAGGCAATAATAAAG 58.861 40.000 0.00 0.00 0.00 1.85
628 629 5.008613 GGCGAGACATGAAGGCAATAATAAA 59.991 40.000 0.00 0.00 0.00 1.40
629 630 4.515191 GGCGAGACATGAAGGCAATAATAA 59.485 41.667 0.00 0.00 0.00 1.40
630 631 4.065088 GGCGAGACATGAAGGCAATAATA 58.935 43.478 0.00 0.00 0.00 0.98
631 632 2.880890 GGCGAGACATGAAGGCAATAAT 59.119 45.455 0.00 0.00 0.00 1.28
632 633 2.092968 AGGCGAGACATGAAGGCAATAA 60.093 45.455 0.00 0.00 0.00 1.40
633 634 1.486310 AGGCGAGACATGAAGGCAATA 59.514 47.619 0.00 0.00 0.00 1.90
634 635 0.254178 AGGCGAGACATGAAGGCAAT 59.746 50.000 0.00 0.00 0.00 3.56
635 636 0.391661 GAGGCGAGACATGAAGGCAA 60.392 55.000 0.00 0.00 0.00 4.52
636 637 1.219124 GAGGCGAGACATGAAGGCA 59.781 57.895 0.00 0.00 0.00 4.75
637 638 0.107945 AAGAGGCGAGACATGAAGGC 60.108 55.000 0.00 0.00 0.00 4.35
638 639 1.800655 CGAAGAGGCGAGACATGAAGG 60.801 57.143 0.00 0.00 0.00 3.46
639 640 1.135257 ACGAAGAGGCGAGACATGAAG 60.135 52.381 0.00 0.00 34.83 3.02
640 641 0.888619 ACGAAGAGGCGAGACATGAA 59.111 50.000 0.00 0.00 34.83 2.57
641 642 0.888619 AACGAAGAGGCGAGACATGA 59.111 50.000 0.00 0.00 34.83 3.07
642 643 1.135257 AGAACGAAGAGGCGAGACATG 60.135 52.381 0.00 0.00 34.83 3.21
643 644 1.133407 GAGAACGAAGAGGCGAGACAT 59.867 52.381 0.00 0.00 34.83 3.06
646 647 1.313812 GGGAGAACGAAGAGGCGAGA 61.314 60.000 0.00 0.00 34.83 4.04
700 701 3.015145 CGGGGGATGAAGGGTGGT 61.015 66.667 0.00 0.00 0.00 4.16
751 757 3.140141 CCGGCGGGCATGTGATTT 61.140 61.111 20.56 0.00 0.00 2.17
785 791 1.517832 CCAGGCCGTCTTCGAATCT 59.482 57.895 0.00 0.00 39.71 2.40
854 860 2.439104 GGATCCAGAGCGCCCTTCT 61.439 63.158 6.95 0.00 0.00 2.85
911 923 1.600636 CTCACCAACGCACCCACAT 60.601 57.895 0.00 0.00 0.00 3.21
1015 1027 2.035449 TCACTTGACAGTCGTCGGAATT 59.965 45.455 0.00 0.00 45.80 2.17
1040 1381 1.358759 CACAAGCAACGTGGGGAAC 59.641 57.895 0.00 0.00 0.00 3.62
1105 1816 5.655532 ACAAGAATAAAGATCTGCAGGCAAT 59.344 36.000 15.13 0.00 0.00 3.56
1154 2169 6.613271 AGACTTACCCATAGATTGATGAGTGT 59.387 38.462 0.00 0.00 0.00 3.55
1177 2192 2.610374 CGAAAACTGGGTCAAAACGAGA 59.390 45.455 0.00 0.00 0.00 4.04
1198 2213 0.444260 GCTCAACTAAAGCAGACGGC 59.556 55.000 0.00 0.00 45.30 5.68
1311 2422 2.654079 CGAAGACAGGGAGGCTGCT 61.654 63.158 5.84 0.00 34.00 4.24
1384 4278 0.721718 GAGCACCAACGTAGACATGC 59.278 55.000 0.00 0.00 0.00 4.06
1385 4279 0.992072 CGAGCACCAACGTAGACATG 59.008 55.000 0.00 0.00 0.00 3.21
1386 4280 0.601558 ACGAGCACCAACGTAGACAT 59.398 50.000 0.00 0.00 40.92 3.06
1388 4282 0.318445 ACACGAGCACCAACGTAGAC 60.318 55.000 0.00 0.00 40.76 2.59
1393 4287 4.354212 CGCACACGAGCACCAACG 62.354 66.667 0.00 0.00 43.93 4.10
1397 4291 0.457166 TATACACGCACACGAGCACC 60.457 55.000 0.00 0.00 43.93 5.01
1417 4311 4.393062 CAGTTTACCGAGCTCAACATCAAT 59.607 41.667 15.40 0.00 0.00 2.57
1429 4394 3.314553 ACGACAATCACAGTTTACCGAG 58.685 45.455 0.00 0.00 0.00 4.63
1466 4431 5.537300 AGACAGCAAAGAAAGACACTCTA 57.463 39.130 0.00 0.00 0.00 2.43
1487 4452 6.723298 ACTCTCTGTCTCCACCAATATAAG 57.277 41.667 0.00 0.00 0.00 1.73
1517 4533 9.974980 AATAAAACCACTAAAATACAACCAGTG 57.025 29.630 0.00 0.00 37.06 3.66
1572 4689 0.610232 ATCCAGCCAAAGCACACTCC 60.610 55.000 0.00 0.00 43.56 3.85
1692 4910 2.297895 ATAGGACACGCAGGGCCAA 61.298 57.895 6.18 0.00 0.00 4.52
1725 4943 8.677300 GCTATCATTTAATCCTCACAAACTGAA 58.323 33.333 0.00 0.00 0.00 3.02
1742 4960 3.066208 TCAGGAGAGGGGCTATCATTT 57.934 47.619 0.00 0.00 0.00 2.32
1749 4967 2.123077 CGGATCAGGAGAGGGGCT 60.123 66.667 0.00 0.00 0.00 5.19
1750 4968 2.034048 GAACGGATCAGGAGAGGGGC 62.034 65.000 0.00 0.00 0.00 5.80
1751 4969 1.403687 GGAACGGATCAGGAGAGGGG 61.404 65.000 0.00 0.00 0.00 4.79
1752 4970 0.397816 AGGAACGGATCAGGAGAGGG 60.398 60.000 0.00 0.00 0.00 4.30
1753 4971 1.490574 AAGGAACGGATCAGGAGAGG 58.509 55.000 0.00 0.00 0.00 3.69
1754 4972 2.419297 CCAAAGGAACGGATCAGGAGAG 60.419 54.545 0.00 0.00 0.00 3.20
1755 4973 1.555075 CCAAAGGAACGGATCAGGAGA 59.445 52.381 0.00 0.00 0.00 3.71
1756 4974 1.279271 ACCAAAGGAACGGATCAGGAG 59.721 52.381 0.00 0.00 0.00 3.69
1757 4975 1.358152 ACCAAAGGAACGGATCAGGA 58.642 50.000 0.00 0.00 0.00 3.86
1758 4976 1.812571 CAACCAAAGGAACGGATCAGG 59.187 52.381 0.00 0.00 0.00 3.86
1759 4977 2.504367 ACAACCAAAGGAACGGATCAG 58.496 47.619 0.00 0.00 0.00 2.90
1760 4978 2.621055 CAACAACCAAAGGAACGGATCA 59.379 45.455 0.00 0.00 0.00 2.92
1761 4979 2.607038 GCAACAACCAAAGGAACGGATC 60.607 50.000 0.00 0.00 0.00 3.36
1762 4980 1.339929 GCAACAACCAAAGGAACGGAT 59.660 47.619 0.00 0.00 0.00 4.18
1763 4981 0.741915 GCAACAACCAAAGGAACGGA 59.258 50.000 0.00 0.00 0.00 4.69
1764 4982 0.593773 CGCAACAACCAAAGGAACGG 60.594 55.000 0.00 0.00 0.00 4.44
1765 4983 0.099791 ACGCAACAACCAAAGGAACG 59.900 50.000 0.00 0.00 0.00 3.95
1766 4984 1.923864 CAACGCAACAACCAAAGGAAC 59.076 47.619 0.00 0.00 0.00 3.62
1767 4985 1.546476 ACAACGCAACAACCAAAGGAA 59.454 42.857 0.00 0.00 0.00 3.36
1768 4986 1.133407 GACAACGCAACAACCAAAGGA 59.867 47.619 0.00 0.00 0.00 3.36
1769 4987 1.134175 AGACAACGCAACAACCAAAGG 59.866 47.619 0.00 0.00 0.00 3.11
1770 4988 2.097466 AGAGACAACGCAACAACCAAAG 59.903 45.455 0.00 0.00 0.00 2.77
1771 4989 2.088423 AGAGACAACGCAACAACCAAA 58.912 42.857 0.00 0.00 0.00 3.28
1772 4990 1.668751 GAGAGACAACGCAACAACCAA 59.331 47.619 0.00 0.00 0.00 3.67
1773 4991 1.295792 GAGAGACAACGCAACAACCA 58.704 50.000 0.00 0.00 0.00 3.67
1774 4992 0.232303 CGAGAGACAACGCAACAACC 59.768 55.000 0.00 0.00 0.00 3.77
1775 4993 3.710233 CGAGAGACAACGCAACAAC 57.290 52.632 0.00 0.00 0.00 3.32
1782 5000 2.870161 CGACGGCGAGAGACAACG 60.870 66.667 16.62 2.21 41.50 4.10
1783 5001 1.796749 GACGACGGCGAGAGACAAC 60.797 63.158 22.49 0.00 41.50 3.32
1784 5002 1.964891 AGACGACGGCGAGAGACAA 60.965 57.895 22.49 0.00 41.50 3.18
1785 5003 2.358369 AGACGACGGCGAGAGACA 60.358 61.111 22.49 0.00 41.50 3.41
1786 5004 2.098680 CAGACGACGGCGAGAGAC 59.901 66.667 22.49 2.75 41.64 3.36
1787 5005 3.125573 CCAGACGACGGCGAGAGA 61.126 66.667 22.49 0.00 41.64 3.10
1788 5006 3.125573 TCCAGACGACGGCGAGAG 61.126 66.667 22.49 5.72 41.64 3.20
1789 5007 3.429141 GTCCAGACGACGGCGAGA 61.429 66.667 22.49 5.34 41.64 4.04
1790 5008 3.432588 AGTCCAGACGACGGCGAG 61.433 66.667 22.49 6.61 46.92 5.03
1791 5009 3.733960 CAGTCCAGACGACGGCGA 61.734 66.667 22.49 0.00 46.92 5.54
1794 5012 4.436998 GGGCAGTCCAGACGACGG 62.437 72.222 0.00 0.00 46.92 4.79
1795 5013 4.436998 GGGGCAGTCCAGACGACG 62.437 72.222 0.00 0.00 46.92 5.12
1796 5014 2.997897 AGGGGCAGTCCAGACGAC 60.998 66.667 0.00 0.00 42.32 4.34
1797 5015 2.680352 GAGGGGCAGTCCAGACGA 60.680 66.667 0.00 0.00 37.22 4.20
1798 5016 3.775654 GGAGGGGCAGTCCAGACG 61.776 72.222 0.00 0.00 37.22 4.18
1799 5017 2.607750 TGGAGGGGCAGTCCAGAC 60.608 66.667 3.05 0.00 39.28 3.51
1803 5021 3.412624 GAGCATGGAGGGGCAGTCC 62.413 68.421 0.00 0.00 34.31 3.85
1804 5022 2.191641 GAGCATGGAGGGGCAGTC 59.808 66.667 0.00 0.00 0.00 3.51
1805 5023 3.415087 GGAGCATGGAGGGGCAGT 61.415 66.667 0.00 0.00 0.00 4.40
1806 5024 4.201122 GGGAGCATGGAGGGGCAG 62.201 72.222 0.00 0.00 0.00 4.85
1808 5026 3.505773 ATGGGAGCATGGAGGGGC 61.506 66.667 0.00 0.00 0.00 5.80
1809 5027 2.519441 CATGGGAGCATGGAGGGG 59.481 66.667 0.00 0.00 0.00 4.79
1810 5028 2.203451 GCATGGGAGCATGGAGGG 60.203 66.667 0.00 0.00 33.41 4.30
1811 5029 2.203451 GGCATGGGAGCATGGAGG 60.203 66.667 0.00 0.00 35.83 4.30
1812 5030 2.203451 GGGCATGGGAGCATGGAG 60.203 66.667 0.00 0.00 35.83 3.86
1813 5031 3.022497 TGGGCATGGGAGCATGGA 61.022 61.111 0.00 0.00 35.83 3.41
1814 5032 2.836360 GTGGGCATGGGAGCATGG 60.836 66.667 0.00 0.00 35.83 3.66
1815 5033 2.836360 GGTGGGCATGGGAGCATG 60.836 66.667 0.00 0.00 35.83 4.06
1816 5034 4.147587 GGGTGGGCATGGGAGCAT 62.148 66.667 0.00 0.00 35.83 3.79
1818 5036 4.512914 GAGGGTGGGCATGGGAGC 62.513 72.222 0.00 0.00 0.00 4.70
1819 5037 2.914734 TAGGAGGGTGGGCATGGGAG 62.915 65.000 0.00 0.00 0.00 4.30
1820 5038 2.967193 TAGGAGGGTGGGCATGGGA 61.967 63.158 0.00 0.00 0.00 4.37
1821 5039 2.368192 TAGGAGGGTGGGCATGGG 60.368 66.667 0.00 0.00 0.00 4.00
1822 5040 1.355718 ATGTAGGAGGGTGGGCATGG 61.356 60.000 0.00 0.00 0.00 3.66
1823 5041 0.552848 AATGTAGGAGGGTGGGCATG 59.447 55.000 0.00 0.00 0.00 4.06
1824 5042 1.215423 GAAATGTAGGAGGGTGGGCAT 59.785 52.381 0.00 0.00 0.00 4.40
1825 5043 0.623723 GAAATGTAGGAGGGTGGGCA 59.376 55.000 0.00 0.00 0.00 5.36
1826 5044 0.919710 AGAAATGTAGGAGGGTGGGC 59.080 55.000 0.00 0.00 0.00 5.36
1827 5045 3.739401 AAAGAAATGTAGGAGGGTGGG 57.261 47.619 0.00 0.00 0.00 4.61
1828 5046 4.017126 GGAAAAGAAATGTAGGAGGGTGG 58.983 47.826 0.00 0.00 0.00 4.61
1829 5047 4.017126 GGGAAAAGAAATGTAGGAGGGTG 58.983 47.826 0.00 0.00 0.00 4.61
1830 5048 3.923425 AGGGAAAAGAAATGTAGGAGGGT 59.077 43.478 0.00 0.00 0.00 4.34
1831 5049 4.018415 TGAGGGAAAAGAAATGTAGGAGGG 60.018 45.833 0.00 0.00 0.00 4.30
1832 5050 4.944317 GTGAGGGAAAAGAAATGTAGGAGG 59.056 45.833 0.00 0.00 0.00 4.30
1833 5051 5.645497 CAGTGAGGGAAAAGAAATGTAGGAG 59.355 44.000 0.00 0.00 0.00 3.69
1834 5052 5.309543 TCAGTGAGGGAAAAGAAATGTAGGA 59.690 40.000 0.00 0.00 0.00 2.94
1835 5053 5.560724 TCAGTGAGGGAAAAGAAATGTAGG 58.439 41.667 0.00 0.00 0.00 3.18
1836 5054 5.123027 GCTCAGTGAGGGAAAAGAAATGTAG 59.877 44.000 21.54 0.00 0.00 2.74
1837 5055 5.003804 GCTCAGTGAGGGAAAAGAAATGTA 58.996 41.667 21.54 0.00 0.00 2.29
1838 5056 3.823304 GCTCAGTGAGGGAAAAGAAATGT 59.177 43.478 21.54 0.00 0.00 2.71
1839 5057 4.077822 AGCTCAGTGAGGGAAAAGAAATG 58.922 43.478 21.54 0.00 0.00 2.32
1840 5058 4.331108 GAGCTCAGTGAGGGAAAAGAAAT 58.669 43.478 21.54 0.00 0.00 2.17
1841 5059 3.744660 GAGCTCAGTGAGGGAAAAGAAA 58.255 45.455 21.54 0.00 0.00 2.52
1842 5060 2.289072 CGAGCTCAGTGAGGGAAAAGAA 60.289 50.000 21.54 0.00 0.00 2.52
1843 5061 1.273606 CGAGCTCAGTGAGGGAAAAGA 59.726 52.381 21.54 0.00 0.00 2.52
1844 5062 1.719600 CGAGCTCAGTGAGGGAAAAG 58.280 55.000 21.54 0.00 0.00 2.27
1845 5063 0.320771 GCGAGCTCAGTGAGGGAAAA 60.321 55.000 21.54 0.00 0.00 2.29
1846 5064 1.293498 GCGAGCTCAGTGAGGGAAA 59.707 57.895 21.54 0.00 0.00 3.13
1847 5065 2.973899 GCGAGCTCAGTGAGGGAA 59.026 61.111 21.54 0.00 0.00 3.97
1848 5066 3.443925 CGCGAGCTCAGTGAGGGA 61.444 66.667 21.54 0.00 0.00 4.20
1849 5067 3.691744 GACGCGAGCTCAGTGAGGG 62.692 68.421 21.54 12.06 0.00 4.30
1850 5068 2.202544 GACGCGAGCTCAGTGAGG 60.203 66.667 21.54 7.01 0.00 3.86
1851 5069 2.575525 CGACGCGAGCTCAGTGAG 60.576 66.667 15.93 16.21 0.00 3.51
1852 5070 2.904676 AACGACGCGAGCTCAGTGA 61.905 57.895 15.93 0.00 0.00 3.41
1853 5071 2.429236 AACGACGCGAGCTCAGTG 60.429 61.111 15.93 14.96 0.00 3.66
1854 5072 2.429236 CAACGACGCGAGCTCAGT 60.429 61.111 15.93 13.05 0.00 3.41
1855 5073 3.832171 GCAACGACGCGAGCTCAG 61.832 66.667 15.93 9.60 0.00 3.35
1856 5074 4.342987 AGCAACGACGCGAGCTCA 62.343 61.111 15.93 0.00 37.23 4.26
1857 5075 3.832171 CAGCAACGACGCGAGCTC 61.832 66.667 15.93 2.73 38.88 4.09
1858 5076 4.647615 ACAGCAACGACGCGAGCT 62.648 61.111 15.93 11.04 40.61 4.09
1859 5077 4.415501 CACAGCAACGACGCGAGC 62.416 66.667 15.93 8.68 36.85 5.03
1860 5078 3.767230 CCACAGCAACGACGCGAG 61.767 66.667 15.93 9.24 36.85 5.03
1871 5089 3.890936 AAGAGAGGCGTGCCACAGC 62.891 63.158 14.29 3.53 38.92 4.40
1872 5090 1.302033 AAAGAGAGGCGTGCCACAG 60.302 57.895 14.29 0.00 38.92 3.66
1873 5091 1.597854 CAAAGAGAGGCGTGCCACA 60.598 57.895 14.29 0.00 38.92 4.17
1874 5092 2.970974 GCAAAGAGAGGCGTGCCAC 61.971 63.158 14.29 6.96 38.92 5.01
1875 5093 2.669569 GCAAAGAGAGGCGTGCCA 60.670 61.111 14.29 0.00 38.92 4.92
1876 5094 2.669569 TGCAAAGAGAGGCGTGCC 60.670 61.111 1.67 1.67 36.12 5.01
1877 5095 2.866028 CTGCAAAGAGAGGCGTGC 59.134 61.111 0.00 0.00 37.51 5.34
1878 5096 2.684843 GGCTGCAAAGAGAGGCGTG 61.685 63.158 0.50 0.00 0.00 5.34
1879 5097 2.359230 GGCTGCAAAGAGAGGCGT 60.359 61.111 0.50 0.00 0.00 5.68
1881 5099 3.808656 GCGGCTGCAAAGAGAGGC 61.809 66.667 14.08 0.00 42.15 4.70
1882 5100 3.130160 GGCGGCTGCAAAGAGAGG 61.130 66.667 21.31 0.00 45.35 3.69
1883 5101 2.046507 AGGCGGCTGCAAAGAGAG 60.047 61.111 21.31 0.00 45.35 3.20
1884 5102 2.359107 CAGGCGGCTGCAAAGAGA 60.359 61.111 27.04 0.00 45.35 3.10
1885 5103 2.670934 ACAGGCGGCTGCAAAGAG 60.671 61.111 36.06 13.64 45.35 2.85
1886 5104 2.669569 GACAGGCGGCTGCAAAGA 60.670 61.111 36.06 0.00 45.35 2.52
1887 5105 4.093952 CGACAGGCGGCTGCAAAG 62.094 66.667 36.06 21.26 45.35 2.77
1888 5106 4.617520 TCGACAGGCGGCTGCAAA 62.618 61.111 36.06 19.75 45.35 3.68
1892 5110 4.363990 ACTGTCGACAGGCGGCTG 62.364 66.667 40.23 34.75 46.81 4.85
1893 5111 4.363990 CACTGTCGACAGGCGGCT 62.364 66.667 40.23 22.39 46.81 5.52
1918 5136 3.294493 CTTGTTGGTGGTGGCGGG 61.294 66.667 0.00 0.00 0.00 6.13
1919 5137 0.322098 TATCTTGTTGGTGGTGGCGG 60.322 55.000 0.00 0.00 0.00 6.13
1920 5138 1.401552 CATATCTTGTTGGTGGTGGCG 59.598 52.381 0.00 0.00 0.00 5.69
1921 5139 1.750778 CCATATCTTGTTGGTGGTGGC 59.249 52.381 0.00 0.00 0.00 5.01
1922 5140 2.025416 TCCCATATCTTGTTGGTGGTGG 60.025 50.000 0.00 0.00 0.00 4.61
1923 5141 3.054434 TCTCCCATATCTTGTTGGTGGTG 60.054 47.826 0.00 0.00 0.00 4.17
1924 5142 3.189606 TCTCCCATATCTTGTTGGTGGT 58.810 45.455 0.00 0.00 0.00 4.16
1925 5143 3.931907 TCTCCCATATCTTGTTGGTGG 57.068 47.619 0.00 0.00 0.00 4.61
1926 5144 5.500234 TCTTTCTCCCATATCTTGTTGGTG 58.500 41.667 0.00 0.00 0.00 4.17
1927 5145 5.251700 ACTCTTTCTCCCATATCTTGTTGGT 59.748 40.000 0.00 0.00 0.00 3.67
1928 5146 5.749462 ACTCTTTCTCCCATATCTTGTTGG 58.251 41.667 0.00 0.00 0.00 3.77
1929 5147 6.094603 CCAACTCTTTCTCCCATATCTTGTTG 59.905 42.308 0.00 0.00 0.00 3.33
1930 5148 6.012508 TCCAACTCTTTCTCCCATATCTTGTT 60.013 38.462 0.00 0.00 0.00 2.83
1931 5149 5.488919 TCCAACTCTTTCTCCCATATCTTGT 59.511 40.000 0.00 0.00 0.00 3.16
1932 5150 5.994250 TCCAACTCTTTCTCCCATATCTTG 58.006 41.667 0.00 0.00 0.00 3.02
1933 5151 5.131809 CCTCCAACTCTTTCTCCCATATCTT 59.868 44.000 0.00 0.00 0.00 2.40
1934 5152 4.657969 CCTCCAACTCTTTCTCCCATATCT 59.342 45.833 0.00 0.00 0.00 1.98
1935 5153 4.410555 ACCTCCAACTCTTTCTCCCATATC 59.589 45.833 0.00 0.00 0.00 1.63
1936 5154 4.375313 ACCTCCAACTCTTTCTCCCATAT 58.625 43.478 0.00 0.00 0.00 1.78
1937 5155 3.803340 ACCTCCAACTCTTTCTCCCATA 58.197 45.455 0.00 0.00 0.00 2.74
1938 5156 2.637165 ACCTCCAACTCTTTCTCCCAT 58.363 47.619 0.00 0.00 0.00 4.00
1939 5157 2.118403 ACCTCCAACTCTTTCTCCCA 57.882 50.000 0.00 0.00 0.00 4.37
1940 5158 3.442076 TCTACCTCCAACTCTTTCTCCC 58.558 50.000 0.00 0.00 0.00 4.30
1941 5159 3.449377 CCTCTACCTCCAACTCTTTCTCC 59.551 52.174 0.00 0.00 0.00 3.71
1942 5160 3.449377 CCCTCTACCTCCAACTCTTTCTC 59.551 52.174 0.00 0.00 0.00 2.87
1943 5161 3.077695 TCCCTCTACCTCCAACTCTTTCT 59.922 47.826 0.00 0.00 0.00 2.52
1944 5162 3.442076 TCCCTCTACCTCCAACTCTTTC 58.558 50.000 0.00 0.00 0.00 2.62
1945 5163 3.077695 TCTCCCTCTACCTCCAACTCTTT 59.922 47.826 0.00 0.00 0.00 2.52
1946 5164 2.655407 TCTCCCTCTACCTCCAACTCTT 59.345 50.000 0.00 0.00 0.00 2.85
1947 5165 2.289467 TCTCCCTCTACCTCCAACTCT 58.711 52.381 0.00 0.00 0.00 3.24
1948 5166 2.830651 TCTCCCTCTACCTCCAACTC 57.169 55.000 0.00 0.00 0.00 3.01
1949 5167 2.359781 CCATCTCCCTCTACCTCCAACT 60.360 54.545 0.00 0.00 0.00 3.16
1950 5168 2.043227 CCATCTCCCTCTACCTCCAAC 58.957 57.143 0.00 0.00 0.00 3.77
1951 5169 1.062121 CCCATCTCCCTCTACCTCCAA 60.062 57.143 0.00 0.00 0.00 3.53
1952 5170 0.563173 CCCATCTCCCTCTACCTCCA 59.437 60.000 0.00 0.00 0.00 3.86
1953 5171 0.178918 CCCCATCTCCCTCTACCTCC 60.179 65.000 0.00 0.00 0.00 4.30
1954 5172 0.563672 ACCCCATCTCCCTCTACCTC 59.436 60.000 0.00 0.00 0.00 3.85
1955 5173 0.266152 CACCCCATCTCCCTCTACCT 59.734 60.000 0.00 0.00 0.00 3.08
1956 5174 0.764752 CCACCCCATCTCCCTCTACC 60.765 65.000 0.00 0.00 0.00 3.18
1957 5175 0.031010 ACCACCCCATCTCCCTCTAC 60.031 60.000 0.00 0.00 0.00 2.59
1958 5176 1.627847 TACCACCCCATCTCCCTCTA 58.372 55.000 0.00 0.00 0.00 2.43
1959 5177 0.722676 TTACCACCCCATCTCCCTCT 59.277 55.000 0.00 0.00 0.00 3.69
1960 5178 1.132500 CTTACCACCCCATCTCCCTC 58.868 60.000 0.00 0.00 0.00 4.30
1961 5179 0.722676 TCTTACCACCCCATCTCCCT 59.277 55.000 0.00 0.00 0.00 4.20
1962 5180 1.490910 CTTCTTACCACCCCATCTCCC 59.509 57.143 0.00 0.00 0.00 4.30
1963 5181 2.436173 CTCTTCTTACCACCCCATCTCC 59.564 54.545 0.00 0.00 0.00 3.71
1964 5182 3.375699 TCTCTTCTTACCACCCCATCTC 58.624 50.000 0.00 0.00 0.00 2.75
1965 5183 3.379452 CTCTCTTCTTACCACCCCATCT 58.621 50.000 0.00 0.00 0.00 2.90
1966 5184 2.436173 CCTCTCTTCTTACCACCCCATC 59.564 54.545 0.00 0.00 0.00 3.51
1967 5185 2.482494 CCTCTCTTCTTACCACCCCAT 58.518 52.381 0.00 0.00 0.00 4.00
1968 5186 1.554822 CCCTCTCTTCTTACCACCCCA 60.555 57.143 0.00 0.00 0.00 4.96
1969 5187 1.205055 CCCTCTCTTCTTACCACCCC 58.795 60.000 0.00 0.00 0.00 4.95
1970 5188 1.555533 CACCCTCTCTTCTTACCACCC 59.444 57.143 0.00 0.00 0.00 4.61
1971 5189 2.498078 CTCACCCTCTCTTCTTACCACC 59.502 54.545 0.00 0.00 0.00 4.61
1972 5190 2.498078 CCTCACCCTCTCTTCTTACCAC 59.502 54.545 0.00 0.00 0.00 4.16
1973 5191 2.382305 TCCTCACCCTCTCTTCTTACCA 59.618 50.000 0.00 0.00 0.00 3.25
1974 5192 3.103080 TCCTCACCCTCTCTTCTTACC 57.897 52.381 0.00 0.00 0.00 2.85
1975 5193 3.449377 CCTTCCTCACCCTCTCTTCTTAC 59.551 52.174 0.00 0.00 0.00 2.34
1976 5194 3.336997 TCCTTCCTCACCCTCTCTTCTTA 59.663 47.826 0.00 0.00 0.00 2.10
1977 5195 2.112691 TCCTTCCTCACCCTCTCTTCTT 59.887 50.000 0.00 0.00 0.00 2.52
1978 5196 1.719378 TCCTTCCTCACCCTCTCTTCT 59.281 52.381 0.00 0.00 0.00 2.85
1979 5197 2.107366 CTCCTTCCTCACCCTCTCTTC 58.893 57.143 0.00 0.00 0.00 2.87
1980 5198 1.273552 CCTCCTTCCTCACCCTCTCTT 60.274 57.143 0.00 0.00 0.00 2.85
1981 5199 0.338120 CCTCCTTCCTCACCCTCTCT 59.662 60.000 0.00 0.00 0.00 3.10
1982 5200 0.336737 TCCTCCTTCCTCACCCTCTC 59.663 60.000 0.00 0.00 0.00 3.20
1983 5201 0.793617 TTCCTCCTTCCTCACCCTCT 59.206 55.000 0.00 0.00 0.00 3.69
1984 5202 1.199615 CTTCCTCCTTCCTCACCCTC 58.800 60.000 0.00 0.00 0.00 4.30
1985 5203 0.494095 ACTTCCTCCTTCCTCACCCT 59.506 55.000 0.00 0.00 0.00 4.34
1986 5204 0.615850 CACTTCCTCCTTCCTCACCC 59.384 60.000 0.00 0.00 0.00 4.61
1987 5205 0.615850 CCACTTCCTCCTTCCTCACC 59.384 60.000 0.00 0.00 0.00 4.02
1988 5206 1.645710 TCCACTTCCTCCTTCCTCAC 58.354 55.000 0.00 0.00 0.00 3.51
1989 5207 2.649742 ATCCACTTCCTCCTTCCTCA 57.350 50.000 0.00 0.00 0.00 3.86
1990 5208 3.580895 GGATATCCACTTCCTCCTTCCTC 59.419 52.174 17.34 0.00 35.64 3.71
1991 5209 3.592865 GGATATCCACTTCCTCCTTCCT 58.407 50.000 17.34 0.00 35.64 3.36
1992 5210 2.640332 GGGATATCCACTTCCTCCTTCC 59.360 54.545 23.27 0.00 37.91 3.46
1993 5211 2.640332 GGGGATATCCACTTCCTCCTTC 59.360 54.545 23.27 1.12 36.20 3.46
1994 5212 2.707554 GGGGATATCCACTTCCTCCTT 58.292 52.381 23.27 0.00 36.20 3.36
1995 5213 2.424684 GGGGATATCCACTTCCTCCT 57.575 55.000 23.27 0.00 36.20 3.69
1996 5214 1.363246 GGGGGATATCCACTTCCTCC 58.637 60.000 23.39 12.52 45.31 4.30
1997 5215 1.981495 CTGGGGGATATCCACTTCCTC 59.019 57.143 23.39 7.09 40.47 3.71
1998 5216 2.047742 GCTGGGGGATATCCACTTCCT 61.048 57.143 23.39 0.00 40.47 3.36
1999 5217 0.402121 GCTGGGGGATATCCACTTCC 59.598 60.000 23.39 17.21 40.47 3.46
2000 5218 1.140312 TGCTGGGGGATATCCACTTC 58.860 55.000 23.39 12.74 40.47 3.01
2001 5219 0.846693 GTGCTGGGGGATATCCACTT 59.153 55.000 23.39 0.00 40.47 3.16
2002 5220 1.062488 GGTGCTGGGGGATATCCACT 61.062 60.000 23.39 0.00 40.47 4.00
2003 5221 1.456287 GGTGCTGGGGGATATCCAC 59.544 63.158 23.27 20.07 40.15 4.02
2004 5222 1.774217 GGGTGCTGGGGGATATCCA 60.774 63.158 23.27 2.68 37.91 3.41
2005 5223 1.142688 ATGGGTGCTGGGGGATATCC 61.143 60.000 13.87 13.87 0.00 2.59
2006 5224 0.038744 CATGGGTGCTGGGGGATATC 59.961 60.000 0.00 0.00 0.00 1.63
2007 5225 1.437849 CCATGGGTGCTGGGGGATAT 61.438 60.000 2.85 0.00 0.00 1.63
2008 5226 2.084300 CCATGGGTGCTGGGGGATA 61.084 63.158 2.85 0.00 0.00 2.59
2009 5227 3.432335 CCATGGGTGCTGGGGGAT 61.432 66.667 2.85 0.00 0.00 3.85
2022 5240 4.511246 ATCTGGGCGCCCACCATG 62.511 66.667 44.23 32.77 41.89 3.66
2023 5241 4.195334 GATCTGGGCGCCCACCAT 62.195 66.667 44.23 35.18 41.89 3.55
2028 5246 4.650377 GATGGGATCTGGGCGCCC 62.650 72.222 39.40 39.40 42.38 6.13
2029 5247 3.543536 GAGATGGGATCTGGGCGCC 62.544 68.421 21.18 21.18 40.38 6.53
2030 5248 2.031768 GAGATGGGATCTGGGCGC 59.968 66.667 0.00 0.00 40.38 6.53
2031 5249 2.142761 TGGAGATGGGATCTGGGCG 61.143 63.158 0.00 0.00 40.38 6.13
2032 5250 1.453669 GTGGAGATGGGATCTGGGC 59.546 63.158 0.00 0.00 40.38 5.36
2033 5251 1.750930 CGTGGAGATGGGATCTGGG 59.249 63.158 0.00 0.00 40.38 4.45
2034 5252 1.070445 GCGTGGAGATGGGATCTGG 59.930 63.158 0.00 0.00 40.38 3.86
2035 5253 1.070445 GGCGTGGAGATGGGATCTG 59.930 63.158 0.00 0.00 40.38 2.90
2036 5254 1.383109 TGGCGTGGAGATGGGATCT 60.383 57.895 0.00 0.00 43.70 2.75
2037 5255 1.227674 GTGGCGTGGAGATGGGATC 60.228 63.158 0.00 0.00 0.00 3.36
2038 5256 2.746375 GGTGGCGTGGAGATGGGAT 61.746 63.158 0.00 0.00 0.00 3.85
2039 5257 3.399181 GGTGGCGTGGAGATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
2040 5258 3.716195 TGGTGGCGTGGAGATGGG 61.716 66.667 0.00 0.00 0.00 4.00
2041 5259 2.436646 GTGGTGGCGTGGAGATGG 60.437 66.667 0.00 0.00 0.00 3.51
2042 5260 2.815211 CGTGGTGGCGTGGAGATG 60.815 66.667 0.00 0.00 0.00 2.90
2043 5261 2.994995 TCGTGGTGGCGTGGAGAT 60.995 61.111 0.00 0.00 0.00 2.75
2044 5262 3.680786 CTCGTGGTGGCGTGGAGA 61.681 66.667 0.00 0.00 0.00 3.71
2045 5263 4.742201 CCTCGTGGTGGCGTGGAG 62.742 72.222 0.00 0.00 45.16 3.86
2055 5273 4.122776 CAAAGGATCTGAATACCTCGTGG 58.877 47.826 0.99 0.99 39.83 4.94
2056 5274 3.557595 GCAAAGGATCTGAATACCTCGTG 59.442 47.826 0.00 0.00 33.16 4.35
2057 5275 3.452627 AGCAAAGGATCTGAATACCTCGT 59.547 43.478 0.00 0.00 33.16 4.18
2058 5276 4.065321 AGCAAAGGATCTGAATACCTCG 57.935 45.455 0.00 0.00 33.16 4.63
2059 5277 5.449725 GCAAAGCAAAGGATCTGAATACCTC 60.450 44.000 0.00 0.00 33.16 3.85
2060 5278 4.400567 GCAAAGCAAAGGATCTGAATACCT 59.599 41.667 0.00 0.00 35.36 3.08
2061 5279 4.158394 TGCAAAGCAAAGGATCTGAATACC 59.842 41.667 0.00 0.00 34.76 2.73
2062 5280 5.098211 GTGCAAAGCAAAGGATCTGAATAC 58.902 41.667 0.00 0.00 41.47 1.89
2063 5281 4.158394 GGTGCAAAGCAAAGGATCTGAATA 59.842 41.667 0.00 0.00 41.47 1.75
2064 5282 3.056322 GGTGCAAAGCAAAGGATCTGAAT 60.056 43.478 0.00 0.00 41.47 2.57
2065 5283 2.297033 GGTGCAAAGCAAAGGATCTGAA 59.703 45.455 0.00 0.00 41.47 3.02
2066 5284 1.888512 GGTGCAAAGCAAAGGATCTGA 59.111 47.619 0.00 0.00 41.47 3.27
2067 5285 1.067354 GGGTGCAAAGCAAAGGATCTG 60.067 52.381 0.00 0.00 41.47 2.90
2068 5286 1.260544 GGGTGCAAAGCAAAGGATCT 58.739 50.000 0.00 0.00 41.47 2.75
2069 5287 0.968405 TGGGTGCAAAGCAAAGGATC 59.032 50.000 0.00 0.00 41.47 3.36
2070 5288 0.681175 GTGGGTGCAAAGCAAAGGAT 59.319 50.000 0.00 0.00 41.47 3.24
2071 5289 1.398958 GGTGGGTGCAAAGCAAAGGA 61.399 55.000 0.00 0.00 41.47 3.36
2072 5290 1.069596 GGTGGGTGCAAAGCAAAGG 59.930 57.895 0.00 0.00 41.47 3.11
2073 5291 0.177604 TTGGTGGGTGCAAAGCAAAG 59.822 50.000 7.29 0.00 41.47 2.77
2074 5292 0.107945 GTTGGTGGGTGCAAAGCAAA 60.108 50.000 10.43 0.00 41.47 3.68
2075 5293 1.519719 GTTGGTGGGTGCAAAGCAA 59.480 52.632 5.98 5.98 41.47 3.91
2076 5294 2.430610 GGTTGGTGGGTGCAAAGCA 61.431 57.895 0.00 0.00 35.60 3.91
2077 5295 2.421314 GGTTGGTGGGTGCAAAGC 59.579 61.111 0.00 0.00 0.00 3.51
2078 5296 1.457455 AGGGTTGGTGGGTGCAAAG 60.457 57.895 0.00 0.00 0.00 2.77
2079 5297 1.456705 GAGGGTTGGTGGGTGCAAA 60.457 57.895 0.00 0.00 0.00 3.68
2080 5298 2.197324 GAGGGTTGGTGGGTGCAA 59.803 61.111 0.00 0.00 0.00 4.08
2081 5299 3.897122 GGAGGGTTGGTGGGTGCA 61.897 66.667 0.00 0.00 0.00 4.57
2082 5300 4.678743 GGGAGGGTTGGTGGGTGC 62.679 72.222 0.00 0.00 0.00 5.01
2083 5301 3.979497 GGGGAGGGTTGGTGGGTG 61.979 72.222 0.00 0.00 0.00 4.61
2086 5304 2.105640 ATTTGGGGGAGGGTTGGTGG 62.106 60.000 0.00 0.00 0.00 4.61
2087 5305 0.614697 GATTTGGGGGAGGGTTGGTG 60.615 60.000 0.00 0.00 0.00 4.17
2088 5306 1.781001 GATTTGGGGGAGGGTTGGT 59.219 57.895 0.00 0.00 0.00 3.67
2089 5307 1.001631 GGATTTGGGGGAGGGTTGG 59.998 63.158 0.00 0.00 0.00 3.77
2090 5308 1.215423 CTAGGATTTGGGGGAGGGTTG 59.785 57.143 0.00 0.00 0.00 3.77
2091 5309 1.203701 ACTAGGATTTGGGGGAGGGTT 60.204 52.381 0.00 0.00 0.00 4.11
2092 5310 0.426022 ACTAGGATTTGGGGGAGGGT 59.574 55.000 0.00 0.00 0.00 4.34
2093 5311 0.846693 CACTAGGATTTGGGGGAGGG 59.153 60.000 0.00 0.00 0.00 4.30
2094 5312 0.183731 GCACTAGGATTTGGGGGAGG 59.816 60.000 0.00 0.00 0.00 4.30
2095 5313 0.183731 GGCACTAGGATTTGGGGGAG 59.816 60.000 0.00 0.00 0.00 4.30
2096 5314 0.253630 AGGCACTAGGATTTGGGGGA 60.254 55.000 0.00 0.00 36.02 4.81
2097 5315 1.518367 TAGGCACTAGGATTTGGGGG 58.482 55.000 0.00 0.00 41.75 5.40
2104 5322 8.800578 CGAGATACGAGGATAGGCACTAGGAT 62.801 50.000 0.00 0.00 44.89 3.24
2105 5323 7.587638 CGAGATACGAGGATAGGCACTAGGA 62.588 52.000 0.00 0.00 44.89 2.94
2106 5324 5.448459 CGAGATACGAGGATAGGCACTAGG 61.448 54.167 0.00 0.00 44.89 3.02
2107 5325 3.619483 CGAGATACGAGGATAGGCACTAG 59.381 52.174 0.00 0.00 44.89 2.57
2108 5326 3.260128 TCGAGATACGAGGATAGGCACTA 59.740 47.826 0.00 0.00 45.90 2.74
2109 5327 2.038689 TCGAGATACGAGGATAGGCACT 59.961 50.000 0.00 0.00 46.45 4.40
2110 5328 2.424557 TCGAGATACGAGGATAGGCAC 58.575 52.381 0.00 0.00 46.45 5.01
2111 5329 2.853235 TCGAGATACGAGGATAGGCA 57.147 50.000 0.00 0.00 46.45 4.75
2128 5346 6.974048 TCTACCAATCAATTGCATTTCAATCG 59.026 34.615 0.00 0.00 44.23 3.34
2139 5357 7.621428 AGACATCAGTTCTACCAATCAATTG 57.379 36.000 0.00 0.00 37.52 2.32
2177 5395 6.254589 CGCAACATTTCCTTTTGTTACAGAAA 59.745 34.615 1.11 1.11 34.42 2.52
2180 5398 4.085107 GCGCAACATTTCCTTTTGTTACAG 60.085 41.667 0.30 0.00 34.42 2.74
2190 5408 1.896660 ACGTGGCGCAACATTTCCT 60.897 52.632 16.68 0.00 0.00 3.36
2192 5410 0.593773 AACACGTGGCGCAACATTTC 60.594 50.000 21.57 0.00 0.00 2.17
2201 5419 1.018752 TCATGGATGAACACGTGGCG 61.019 55.000 21.57 0.00 33.08 5.69
2203 5421 1.066215 TCCTCATGGATGAACACGTGG 60.066 52.381 21.57 1.66 37.46 4.94
2207 5425 1.066143 ACGGTCCTCATGGATGAACAC 60.066 52.381 0.00 0.00 45.29 3.32
2208 5426 1.207089 GACGGTCCTCATGGATGAACA 59.793 52.381 0.00 0.00 45.29 3.18
2209 5427 1.482593 AGACGGTCCTCATGGATGAAC 59.517 52.381 4.14 0.00 45.29 3.18
2222 5440 7.766219 TTACATAAAAGCTGAATAGACGGTC 57.234 36.000 0.00 0.00 0.00 4.79
2270 5488 4.414337 AGACTGCACCAGAATAGATTCC 57.586 45.455 0.00 0.00 37.51 3.01
2318 5536 6.402550 GCCAGGAATGTCGCATATTACTTATG 60.403 42.308 0.00 0.00 40.67 1.90
2330 5548 1.953559 TATTCTGCCAGGAATGTCGC 58.046 50.000 0.00 0.00 36.69 5.19
2388 5606 8.466798 CACGGATATGGAAGTTTAAGGAAAAAT 58.533 33.333 0.00 0.00 0.00 1.82
2394 5613 3.564225 GGCACGGATATGGAAGTTTAAGG 59.436 47.826 0.00 0.00 0.00 2.69
2410 5629 1.024579 AGCGTCTAAATTGGGCACGG 61.025 55.000 0.00 0.00 0.00 4.94
2427 5646 7.781548 ATCAAAATCCAGATTAATTTGCAGC 57.218 32.000 0.41 0.00 0.00 5.25
2428 5647 9.595823 AGAATCAAAATCCAGATTAATTTGCAG 57.404 29.630 0.41 0.00 34.79 4.41
2607 5826 6.434028 ACAACATTATGAAGCATGTAGGTTGT 59.566 34.615 15.26 15.26 38.51 3.32
2627 5846 7.701539 ATATTCTGAATAAAGGTGCACAACA 57.298 32.000 20.43 6.43 0.00 3.33
2628 5847 9.669353 CATATATTCTGAATAAAGGTGCACAAC 57.331 33.333 20.43 1.46 0.00 3.32
2659 5878 0.680618 TGGTTCTGCAGCCAAAATGG 59.319 50.000 9.47 0.00 41.55 3.16
2666 5885 0.752658 AAACCTTTGGTTCTGCAGCC 59.247 50.000 9.47 6.09 46.20 4.85
2669 5888 5.538053 TGATGAATAAACCTTTGGTTCTGCA 59.462 36.000 2.22 0.00 46.20 4.41
2695 5914 2.946990 CTGCACATACAAGCCATCATCA 59.053 45.455 0.00 0.00 0.00 3.07
2729 5948 6.560253 AGTATGGACTGAACACAATTTCAC 57.440 37.500 0.00 0.00 33.41 3.18
2731 5950 7.667043 TGTAGTATGGACTGAACACAATTTC 57.333 36.000 0.00 0.00 36.28 2.17
2758 5977 2.433239 GTGCTTTAATACCCTCCGAGGA 59.567 50.000 16.69 0.00 37.67 3.71
2761 5980 3.262405 AGTTGTGCTTTAATACCCTCCGA 59.738 43.478 0.00 0.00 0.00 4.55
2824 6043 4.828829 AGTACCTTCCTAAAATGGTGACG 58.171 43.478 0.00 0.00 34.33 4.35
2909 6149 6.304356 TCTTTAGTTTCTGCACAACATCAG 57.696 37.500 6.76 0.00 0.00 2.90
2940 6180 5.700722 ACAGAGCATATAATTGCATGTGG 57.299 39.130 7.85 0.00 45.23 4.17
3079 6320 9.385902 CAATAGAAAAGGTAACATCATAATGCG 57.614 33.333 0.00 0.00 36.26 4.73
3294 6554 4.419282 TGCCAGGATTCTTTTTGGAATCT 58.581 39.130 14.21 2.06 46.24 2.40
3475 6751 3.307975 CCCTGAAAAAGAGGAGCTCATGA 60.308 47.826 17.19 0.00 32.06 3.07
3550 6826 2.666619 GCGTGAAATCAGCAAGGAAGTG 60.667 50.000 0.00 0.00 0.00 3.16
3569 6845 0.813184 AATGGCATTCTGTTCCTGCG 59.187 50.000 6.96 0.00 36.76 5.18
3602 6878 3.305720 TCCTACTGACAGACACCACTTT 58.694 45.455 10.08 0.00 0.00 2.66
3684 6963 5.534654 CCAACCTACTGTCTTCAATTTTCCA 59.465 40.000 0.00 0.00 0.00 3.53
3698 6977 1.073923 AGTGCTTTCCCCAACCTACTG 59.926 52.381 0.00 0.00 0.00 2.74
3714 6993 7.713507 TGAGTAAGAGAGTAGAGATTCTAGTGC 59.286 40.741 0.00 0.00 33.03 4.40
3724 7003 4.199310 AGCAGCTGAGTAAGAGAGTAGAG 58.801 47.826 20.43 0.00 0.00 2.43
3729 7008 6.573664 ATGTATAGCAGCTGAGTAAGAGAG 57.426 41.667 20.43 0.00 0.00 3.20
3766 7045 1.697297 CCAAAGGGCCCATACCTGT 59.303 57.895 27.56 0.00 38.63 4.00
3798 7077 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
3799 7078 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
3800 7079 0.110010 TTTGTGTGTGTGTGTGTGCG 60.110 50.000 0.00 0.00 0.00 5.34
3801 7080 1.335415 TGTTTGTGTGTGTGTGTGTGC 60.335 47.619 0.00 0.00 0.00 4.57
3832 7111 2.771328 CTTGAGGGGGAGTGTTGGGC 62.771 65.000 0.00 0.00 0.00 5.36
3867 7146 2.037641 TGTAGCAAGATGGGGATGATCG 59.962 50.000 0.00 0.00 0.00 3.69
3900 7179 4.045022 CAAAGGATTAGGGGTTAGGGAGA 58.955 47.826 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.