Multiple sequence alignment - TraesCS6D01G324600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G324600 chr6D 100.000 4146 0 0 1 4146 431211588 431207443 0.000000e+00 7657.0
1 TraesCS6D01G324600 chr6D 88.437 1081 93 18 962 2037 431269986 431268933 0.000000e+00 1275.0
2 TraesCS6D01G324600 chr6D 88.134 1045 99 14 2385 3409 431268271 431267232 0.000000e+00 1219.0
3 TraesCS6D01G324600 chr6D 84.615 364 40 10 3434 3785 431267165 431266806 8.530000e-92 348.0
4 TraesCS6D01G324600 chr6D 86.486 222 26 4 2165 2384 431268543 431268324 1.490000e-59 241.0
5 TraesCS6D01G324600 chr6D 82.222 225 35 3 1583 1805 3040746 3040525 5.470000e-44 189.0
6 TraesCS6D01G324600 chr6D 92.771 83 6 0 1084 1166 3040953 3040871 2.020000e-23 121.0
7 TraesCS6D01G324600 chr6B 95.392 2930 76 18 833 3707 650805662 650802737 0.000000e+00 4608.0
8 TraesCS6D01G324600 chr6B 87.300 1441 129 32 962 2393 650924906 650923511 0.000000e+00 1598.0
9 TraesCS6D01G324600 chr6B 89.135 1040 95 11 2385 3409 650923466 650922430 0.000000e+00 1279.0
10 TraesCS6D01G324600 chr6B 89.311 421 35 8 3715 4130 650799618 650799203 1.710000e-143 520.0
11 TraesCS6D01G324600 chr6B 86.684 383 43 4 3409 3785 650922380 650922000 6.410000e-113 418.0
12 TraesCS6D01G324600 chr6B 92.164 268 13 5 574 834 571453863 571454129 5.060000e-99 372.0
13 TraesCS6D01G324600 chr6A 94.196 2412 74 32 2 2385 577882522 577880149 0.000000e+00 3618.0
14 TraesCS6D01G324600 chr6A 85.743 1487 135 37 928 2384 578039635 578038196 0.000000e+00 1500.0
15 TraesCS6D01G324600 chr6A 95.879 825 34 0 2385 3209 577880115 577879291 0.000000e+00 1336.0
16 TraesCS6D01G324600 chr6A 89.114 1038 98 12 2385 3409 578038160 578037125 0.000000e+00 1277.0
17 TraesCS6D01G324600 chr6A 85.998 857 60 23 3283 4130 577875282 577874477 0.000000e+00 863.0
18 TraesCS6D01G324600 chr6A 84.143 391 46 7 3409 3785 578037075 578036687 8.470000e-97 364.0
19 TraesCS6D01G324600 chr6A 94.554 202 10 1 3586 3786 577851696 577851897 1.120000e-80 311.0
20 TraesCS6D01G324600 chr6A 80.822 438 34 14 3694 4130 577851898 577852286 8.710000e-77 298.0
21 TraesCS6D01G324600 chr6A 83.019 318 46 7 2 315 586536481 586536168 8.780000e-72 281.0
22 TraesCS6D01G324600 chr6A 97.222 36 1 0 3207 3242 577875329 577875294 1.240000e-05 62.1
23 TraesCS6D01G324600 chr7D 80.104 578 101 12 2 576 627849389 627848823 6.410000e-113 418.0
24 TraesCS6D01G324600 chr7D 80.104 578 100 13 2 576 627731990 627731425 2.310000e-112 416.0
25 TraesCS6D01G324600 chr7D 80.104 578 100 13 2 576 628086555 628085990 2.310000e-112 416.0
26 TraesCS6D01G324600 chr7D 79.758 578 102 13 2 576 628005245 628004680 4.990000e-109 405.0
27 TraesCS6D01G324600 chr5A 94.318 264 8 3 578 834 34841904 34842167 8.350000e-107 398.0
28 TraesCS6D01G324600 chr7B 93.511 262 12 1 578 834 598296146 598296407 6.500000e-103 385.0
29 TraesCS6D01G324600 chr2B 93.511 262 12 1 578 834 166592116 166592377 6.500000e-103 385.0
30 TraesCS6D01G324600 chr1B 92.748 262 14 1 578 834 538625376 538625637 1.410000e-99 374.0
31 TraesCS6D01G324600 chr7A 91.481 270 17 4 574 838 465760869 465760601 2.360000e-97 366.0
32 TraesCS6D01G324600 chr7A 82.759 348 50 6 2 347 22979605 22979266 6.740000e-78 302.0
33 TraesCS6D01G324600 chr1D 90.909 275 19 3 576 845 76970949 76971222 8.470000e-97 364.0
34 TraesCS6D01G324600 chr1D 94.872 39 2 0 543 581 229069818 229069780 1.240000e-05 62.1
35 TraesCS6D01G324600 chr5D 87.580 314 26 10 579 885 64191504 64191197 6.590000e-93 351.0
36 TraesCS6D01G324600 chr2A 87.687 268 25 2 1077 1336 474320185 474319918 5.210000e-79 305.0
37 TraesCS6D01G324600 chr2A 97.297 37 1 0 1451 1487 474319917 474319881 3.460000e-06 63.9
38 TraesCS6D01G324600 chrUn 80.571 350 52 10 2 347 288185032 288184695 5.320000e-64 255.0
39 TraesCS6D01G324600 chrUn 97.619 42 1 0 1451 1492 40196085 40196126 5.750000e-09 73.1
40 TraesCS6D01G324600 chr3B 80.571 350 52 10 2 347 6686824 6686487 5.320000e-64 255.0
41 TraesCS6D01G324600 chr2D 75.490 204 36 13 385 580 41265950 41266147 2.050000e-13 87.9
42 TraesCS6D01G324600 chr2D 87.755 49 5 1 532 580 559862679 559862726 5.790000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G324600 chr6D 431207443 431211588 4145 True 7657.000000 7657 100.000000 1 4146 1 chr6D.!!$R1 4145
1 TraesCS6D01G324600 chr6D 431266806 431269986 3180 True 770.750000 1275 86.918000 962 3785 4 chr6D.!!$R3 2823
2 TraesCS6D01G324600 chr6B 650799203 650805662 6459 True 2564.000000 4608 92.351500 833 4130 2 chr6B.!!$R1 3297
3 TraesCS6D01G324600 chr6B 650922000 650924906 2906 True 1098.333333 1598 87.706333 962 3785 3 chr6B.!!$R2 2823
4 TraesCS6D01G324600 chr6A 577874477 577882522 8045 True 1469.775000 3618 93.323750 2 4130 4 chr6A.!!$R2 4128
5 TraesCS6D01G324600 chr6A 578036687 578039635 2948 True 1047.000000 1500 86.333333 928 3785 3 chr6A.!!$R3 2857
6 TraesCS6D01G324600 chr6A 577851696 577852286 590 False 304.500000 311 87.688000 3586 4130 2 chr6A.!!$F1 544
7 TraesCS6D01G324600 chr7D 627848823 627849389 566 True 418.000000 418 80.104000 2 576 1 chr7D.!!$R2 574
8 TraesCS6D01G324600 chr7D 627731425 627731990 565 True 416.000000 416 80.104000 2 576 1 chr7D.!!$R1 574
9 TraesCS6D01G324600 chr7D 628085990 628086555 565 True 416.000000 416 80.104000 2 576 1 chr7D.!!$R4 574
10 TraesCS6D01G324600 chr7D 628004680 628005245 565 True 405.000000 405 79.758000 2 576 1 chr7D.!!$R3 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
452 453 0.454196 GCGGCCCATGTACGAAATTT 59.546 50.000 0.0 0.0 0.00 1.82 F
592 594 3.447950 TGGTAGGTACTCCCTCCTTTTC 58.552 50.000 0.0 0.0 44.81 2.29 F
2649 3101 1.825474 CCAGTTCTACACCGAGGACAT 59.175 52.381 0.0 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1255 1316 4.324991 GAACGGGTCCTTGGCGGT 62.325 66.667 0.00 0.00 0.00 5.68 R
2740 3192 0.394352 GGGCCGTGATCATGTCCTTT 60.394 55.000 14.39 0.00 0.00 3.11 R
3651 8174 1.086696 GGTCTTCTGCTGCGCATTAA 58.913 50.000 12.24 1.88 38.13 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 5.122512 TGTTCTGGACGTTTTTCAAAACA 57.877 34.783 14.05 0.00 46.52 2.83
372 373 3.772522 GCTCGTTGCGATAAATAGGAC 57.227 47.619 0.00 0.00 34.61 3.85
408 409 3.866910 GCATGTGCATGAAAATAACTGGG 59.133 43.478 15.53 0.00 41.20 4.45
431 432 1.299541 CTTTGCTGGGCCATACTACG 58.700 55.000 6.72 0.00 0.00 3.51
452 453 0.454196 GCGGCCCATGTACGAAATTT 59.546 50.000 0.00 0.00 0.00 1.82
504 506 4.657039 GGGACAAATATCCAGTACCACCTA 59.343 45.833 0.00 0.00 40.96 3.08
583 585 5.123936 CCTTGCTTTATTGGTAGGTACTCC 58.876 45.833 0.00 0.00 41.75 3.85
588 590 4.913154 TTATTGGTAGGTACTCCCTCCT 57.087 45.455 0.00 0.00 44.81 3.69
591 593 3.572661 TGGTAGGTACTCCCTCCTTTT 57.427 47.619 0.00 0.00 44.81 2.27
592 594 3.447950 TGGTAGGTACTCCCTCCTTTTC 58.552 50.000 0.00 0.00 44.81 2.29
601 603 7.002879 GGTACTCCCTCCTTTTCTTTTTAGTT 58.997 38.462 0.00 0.00 0.00 2.24
604 606 6.156748 TCCCTCCTTTTCTTTTTAGTTTGC 57.843 37.500 0.00 0.00 0.00 3.68
846 853 7.377696 ACGGAGGGAGTAGGTATAGATATAG 57.622 44.000 0.00 0.00 0.00 1.31
931 983 4.321304 CGTAGGTGTAGCATTCCTCCTATG 60.321 50.000 0.00 0.00 33.34 2.23
2649 3101 1.825474 CCAGTTCTACACCGAGGACAT 59.175 52.381 0.00 0.00 0.00 3.06
2740 3192 4.572571 AAGCACCCGTTCGGCCAA 62.573 61.111 2.24 0.00 33.26 4.52
3146 3598 1.269831 GCTACACTTCCGGGCTATGAG 60.270 57.143 0.00 0.00 0.00 2.90
3178 3631 3.250762 GTCATGTTGTTTGTGCTCTGCTA 59.749 43.478 0.00 0.00 0.00 3.49
3340 7769 5.060506 TCGAGGCTTGTTATTCACAGAAAA 58.939 37.500 0.77 0.00 36.48 2.29
3360 7789 9.634300 CAGAAAAAGTACGTTTAGAGTCTTTTC 57.366 33.333 7.22 0.00 35.17 2.29
3437 7920 3.570912 AAAGAACCGAACAAGAAGGGA 57.429 42.857 0.00 0.00 0.00 4.20
3543 8042 0.685097 TTTGGAACTGACTCTCCCGG 59.315 55.000 0.00 0.00 0.00 5.73
3597 8096 2.409948 AATACACCTTCAGGAGCTGC 57.590 50.000 0.00 0.00 38.94 5.25
3603 8104 1.277557 ACCTTCAGGAGCTGCTGTAAG 59.722 52.381 31.17 28.07 38.94 2.34
3661 8184 2.604046 ACTCTAGGGTTAATGCGCAG 57.396 50.000 18.32 0.00 0.00 5.18
3820 11455 3.481467 CGTAAGTCGCCTGAAAACGAATC 60.481 47.826 0.00 0.00 40.47 2.52
3821 11456 1.439679 AGTCGCCTGAAAACGAATCC 58.560 50.000 0.00 0.00 40.47 3.01
3822 11457 0.446616 GTCGCCTGAAAACGAATCCC 59.553 55.000 0.00 0.00 40.47 3.85
3845 11511 5.124776 CCGGTCAGTCAATTTTAAGCCATTA 59.875 40.000 0.00 0.00 0.00 1.90
3846 11512 6.349777 CCGGTCAGTCAATTTTAAGCCATTAA 60.350 38.462 0.00 0.00 0.00 1.40
3853 11519 9.154847 AGTCAATTTTAAGCCATTAATTTCTGC 57.845 29.630 0.00 0.00 31.07 4.26
3854 11520 9.154847 GTCAATTTTAAGCCATTAATTTCTGCT 57.845 29.630 0.00 0.00 31.07 4.24
3855 11521 9.723601 TCAATTTTAAGCCATTAATTTCTGCTT 57.276 25.926 12.95 12.95 43.97 3.91
3856 11522 9.763465 CAATTTTAAGCCATTAATTTCTGCTTG 57.237 29.630 15.99 2.34 41.92 4.01
3857 11523 9.723601 AATTTTAAGCCATTAATTTCTGCTTGA 57.276 25.926 15.99 9.06 41.92 3.02
3858 11524 9.723601 ATTTTAAGCCATTAATTTCTGCTTGAA 57.276 25.926 15.99 12.84 41.92 2.69
3859 11525 8.761575 TTTAAGCCATTAATTTCTGCTTGAAG 57.238 30.769 15.99 0.00 41.92 3.02
3860 11526 6.594788 AAGCCATTAATTTCTGCTTGAAGA 57.405 33.333 0.00 0.00 40.51 2.87
3861 11527 6.786967 AGCCATTAATTTCTGCTTGAAGAT 57.213 33.333 0.00 0.00 35.89 2.40
3862 11528 7.179076 AGCCATTAATTTCTGCTTGAAGATT 57.821 32.000 0.00 0.00 35.89 2.40
3863 11529 7.263496 AGCCATTAATTTCTGCTTGAAGATTC 58.737 34.615 0.00 0.00 35.89 2.52
3864 11530 6.197842 GCCATTAATTTCTGCTTGAAGATTCG 59.802 38.462 0.00 0.00 35.89 3.34
3865 11531 7.253422 CCATTAATTTCTGCTTGAAGATTCGT 58.747 34.615 0.00 0.00 35.89 3.85
3866 11532 7.219535 CCATTAATTTCTGCTTGAAGATTCGTG 59.780 37.037 0.00 0.00 35.89 4.35
3867 11533 3.542712 TTTCTGCTTGAAGATTCGTGC 57.457 42.857 0.00 3.62 35.89 5.34
3868 11534 2.462456 TCTGCTTGAAGATTCGTGCT 57.538 45.000 0.00 0.00 0.00 4.40
3869 11535 2.771089 TCTGCTTGAAGATTCGTGCTT 58.229 42.857 0.00 0.00 0.00 3.91
3870 11536 2.738846 TCTGCTTGAAGATTCGTGCTTC 59.261 45.455 0.00 0.00 41.57 3.86
3875 11541 2.703416 TGAAGATTCGTGCTTCATGCT 58.297 42.857 11.36 0.00 44.81 3.79
3876 11542 3.076621 TGAAGATTCGTGCTTCATGCTT 58.923 40.909 11.36 0.00 44.81 3.91
3877 11543 4.252878 TGAAGATTCGTGCTTCATGCTTA 58.747 39.130 11.36 0.00 44.81 3.09
3878 11544 4.877823 TGAAGATTCGTGCTTCATGCTTAT 59.122 37.500 11.36 0.00 44.81 1.73
3879 11545 5.355071 TGAAGATTCGTGCTTCATGCTTATT 59.645 36.000 11.36 0.00 44.81 1.40
3880 11546 5.824904 AGATTCGTGCTTCATGCTTATTT 57.175 34.783 0.00 0.00 43.37 1.40
3881 11547 5.575957 AGATTCGTGCTTCATGCTTATTTG 58.424 37.500 0.00 0.00 43.37 2.32
3888 11554 4.277921 TGCTTCATGCTTATTTGTGTGTCA 59.722 37.500 0.00 0.00 43.37 3.58
3897 11563 7.047271 TGCTTATTTGTGTGTCAGCTATCATA 58.953 34.615 0.00 0.00 0.00 2.15
3912 11578 5.047802 AGCTATCATATTTTGGGCCGAAATG 60.048 40.000 32.91 22.69 30.96 2.32
3916 11582 5.799213 TCATATTTTGGGCCGAAATGTTTT 58.201 33.333 32.91 16.08 30.96 2.43
3921 11587 1.271102 TGGGCCGAAATGTTTTACTGC 59.729 47.619 0.00 0.00 0.00 4.40
3942 11608 2.099405 CCATTATTTTGGGCCAGTCGT 58.901 47.619 6.23 0.00 32.80 4.34
3950 11616 0.988832 TGGGCCAGTCGTTTCCTTAT 59.011 50.000 0.00 0.00 0.00 1.73
3981 11647 6.427853 GGAAGCCCATTTCATATTTTTATGGC 59.572 38.462 0.00 0.00 35.51 4.40
3997 11663 2.409870 GGCCCGTTGATGCTTCCTG 61.410 63.158 0.00 0.00 0.00 3.86
4140 11807 9.533253 AAATGCATATAAATTAGAAGTTGCACC 57.467 29.630 0.00 0.00 41.13 5.01
4141 11808 7.637631 TGCATATAAATTAGAAGTTGCACCA 57.362 32.000 0.00 0.00 34.24 4.17
4142 11809 8.236585 TGCATATAAATTAGAAGTTGCACCAT 57.763 30.769 0.00 0.00 34.24 3.55
4143 11810 8.694540 TGCATATAAATTAGAAGTTGCACCATT 58.305 29.630 0.00 0.00 34.24 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 192 8.642432 CCTTTCAAGGTTATTTTTCTTTCTCCT 58.358 33.333 0.00 0.00 41.41 3.69
266 267 7.757624 TGGTTCTGTGTTGTGTTTCTATTTTTC 59.242 33.333 0.00 0.00 0.00 2.29
431 432 3.980442 TTTCGTACATGGGCCGCCC 62.980 63.158 22.81 22.81 45.71 6.13
477 479 4.785914 TGGTACTGGATATTTGTCCCTTCA 59.214 41.667 0.00 0.00 37.48 3.02
601 603 8.347004 TGACTTTGACCAAATCTTATATGCAA 57.653 30.769 0.00 0.00 0.00 4.08
806 813 3.813166 CCTCCGTTTCTTTTTAGTCTGCA 59.187 43.478 0.00 0.00 0.00 4.41
824 831 7.710582 ACCTATATCTATACCTACTCCCTCC 57.289 44.000 0.00 0.00 0.00 4.30
931 983 2.997986 CAAAGCATGAGCATGGGTTTTC 59.002 45.455 12.00 0.00 45.49 2.29
1255 1316 4.324991 GAACGGGTCCTTGGCGGT 62.325 66.667 0.00 0.00 0.00 5.68
2740 3192 0.394352 GGGCCGTGATCATGTCCTTT 60.394 55.000 14.39 0.00 0.00 3.11
3073 3525 4.141574 CCCAAGATAAAATCCCTCACCGTA 60.142 45.833 0.00 0.00 0.00 4.02
3146 3598 5.914635 CACAAACAACATGACACCATCTTAC 59.085 40.000 0.00 0.00 0.00 2.34
3178 3631 6.074648 TCTGGTTCCATGTTCCAAGTTAATT 58.925 36.000 0.00 0.00 0.00 1.40
3340 7769 6.922407 GTGAGGAAAAGACTCTAAACGTACTT 59.078 38.462 0.00 0.00 35.98 2.24
3353 7782 4.451096 TCGTTTATGCAGTGAGGAAAAGAC 59.549 41.667 0.00 0.00 0.00 3.01
3360 7789 4.122046 TCATCATCGTTTATGCAGTGAGG 58.878 43.478 0.00 0.00 35.38 3.86
3419 7898 2.805657 CGTTCCCTTCTTGTTCGGTTCT 60.806 50.000 0.00 0.00 0.00 3.01
3437 7920 4.212636 ACAAGCGTAATTAAGCTGAACGTT 59.787 37.500 23.75 0.00 43.78 3.99
3543 8042 2.044123 AGCCCAAGAATGATCGTTCC 57.956 50.000 21.51 8.12 0.00 3.62
3651 8174 1.086696 GGTCTTCTGCTGCGCATTAA 58.913 50.000 12.24 1.88 38.13 1.40
3820 11455 2.163613 GGCTTAAAATTGACTGACCGGG 59.836 50.000 6.32 0.00 0.00 5.73
3821 11456 2.817258 TGGCTTAAAATTGACTGACCGG 59.183 45.455 0.00 0.00 0.00 5.28
3822 11457 4.701956 ATGGCTTAAAATTGACTGACCG 57.298 40.909 0.00 0.00 0.00 4.79
3845 11511 4.217118 AGCACGAATCTTCAAGCAGAAATT 59.783 37.500 0.00 0.00 35.40 1.82
3846 11512 3.755378 AGCACGAATCTTCAAGCAGAAAT 59.245 39.130 0.00 0.00 35.40 2.17
3866 11532 4.797471 TGACACACAAATAAGCATGAAGC 58.203 39.130 0.00 0.00 46.19 3.86
3867 11533 4.855388 GCTGACACACAAATAAGCATGAAG 59.145 41.667 0.00 0.00 0.00 3.02
3868 11534 4.520111 AGCTGACACACAAATAAGCATGAA 59.480 37.500 0.00 0.00 0.00 2.57
3869 11535 4.074259 AGCTGACACACAAATAAGCATGA 58.926 39.130 0.00 0.00 0.00 3.07
3870 11536 4.430137 AGCTGACACACAAATAAGCATG 57.570 40.909 0.00 0.00 0.00 4.06
3871 11537 5.882000 TGATAGCTGACACACAAATAAGCAT 59.118 36.000 0.00 0.00 0.00 3.79
3872 11538 5.244755 TGATAGCTGACACACAAATAAGCA 58.755 37.500 0.00 0.00 0.00 3.91
3873 11539 5.801350 TGATAGCTGACACACAAATAAGC 57.199 39.130 0.00 0.00 0.00 3.09
3877 11543 8.192774 CCAAAATATGATAGCTGACACACAAAT 58.807 33.333 0.00 0.00 0.00 2.32
3878 11544 7.362834 CCCAAAATATGATAGCTGACACACAAA 60.363 37.037 0.00 0.00 0.00 2.83
3879 11545 6.095300 CCCAAAATATGATAGCTGACACACAA 59.905 38.462 0.00 0.00 0.00 3.33
3880 11546 5.589855 CCCAAAATATGATAGCTGACACACA 59.410 40.000 0.00 0.00 0.00 3.72
3881 11547 5.506317 GCCCAAAATATGATAGCTGACACAC 60.506 44.000 0.00 0.00 0.00 3.82
3888 11554 3.788227 TCGGCCCAAAATATGATAGCT 57.212 42.857 0.00 0.00 0.00 3.32
3897 11563 4.994217 CAGTAAAACATTTCGGCCCAAAAT 59.006 37.500 0.00 2.18 0.00 1.82
3935 11601 1.743394 GCCCAATAAGGAAACGACTGG 59.257 52.381 0.00 0.00 41.22 4.00
3942 11608 1.470051 GCTTCCGCCCAATAAGGAAA 58.530 50.000 0.00 0.00 42.71 3.13
3971 11637 2.765699 AGCATCAACGGGCCATAAAAAT 59.234 40.909 4.39 0.00 0.00 1.82
3981 11647 1.247567 AAACAGGAAGCATCAACGGG 58.752 50.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.