Multiple sequence alignment - TraesCS6D01G324400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G324400 chr6D 100.000 2720 0 0 1 2720 430886072 430883353 0.000000e+00 5024.0
1 TraesCS6D01G324400 chr6D 95.225 2178 81 6 557 2720 347439912 347437744 0.000000e+00 3424.0
2 TraesCS6D01G324400 chr5D 95.087 2178 85 6 563 2720 426404706 426402531 0.000000e+00 3410.0
3 TraesCS6D01G324400 chr5D 92.024 2169 150 14 564 2720 179972956 179970799 0.000000e+00 3025.0
4 TraesCS6D01G324400 chr5D 93.619 1959 113 10 559 2507 495796219 495794263 0.000000e+00 2915.0
5 TraesCS6D01G324400 chr5A 94.480 2174 100 8 563 2720 375292317 375290148 0.000000e+00 3332.0
6 TraesCS6D01G324400 chr7B 93.253 2164 124 7 564 2720 549934408 549932260 0.000000e+00 3168.0
7 TraesCS6D01G324400 chr1B 93.124 2167 131 7 563 2720 570458682 570456525 0.000000e+00 3160.0
8 TraesCS6D01G324400 chr3D 95.790 1829 64 4 893 2720 515672359 515674175 0.000000e+00 2939.0
9 TraesCS6D01G324400 chr2B 90.992 2187 171 16 558 2720 650493646 650495830 0.000000e+00 2924.0
10 TraesCS6D01G324400 chr2B 92.506 1201 76 7 563 1758 394137755 394136564 0.000000e+00 1707.0
11 TraesCS6D01G324400 chr2B 87.263 369 16 14 31 398 141838258 141838596 2.540000e-105 392.0
12 TraesCS6D01G324400 chr2B 97.887 142 3 0 396 537 141838624 141838765 2.090000e-61 246.0
13 TraesCS6D01G324400 chr2B 98.113 53 1 0 485 537 721868879 721868931 2.880000e-15 93.5
14 TraesCS6D01G324400 chr2A 87.611 1348 135 22 561 1898 682196842 682198167 0.000000e+00 1535.0
15 TraesCS6D01G324400 chr2A 89.453 512 51 3 563 1072 603689299 603689809 0.000000e+00 643.0
16 TraesCS6D01G324400 chr4A 86.857 525 63 6 563 1084 62460243 62460764 1.400000e-162 582.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G324400 chr6D 430883353 430886072 2719 True 5024 5024 100.000 1 2720 1 chr6D.!!$R2 2719
1 TraesCS6D01G324400 chr6D 347437744 347439912 2168 True 3424 3424 95.225 557 2720 1 chr6D.!!$R1 2163
2 TraesCS6D01G324400 chr5D 426402531 426404706 2175 True 3410 3410 95.087 563 2720 1 chr5D.!!$R2 2157
3 TraesCS6D01G324400 chr5D 179970799 179972956 2157 True 3025 3025 92.024 564 2720 1 chr5D.!!$R1 2156
4 TraesCS6D01G324400 chr5D 495794263 495796219 1956 True 2915 2915 93.619 559 2507 1 chr5D.!!$R3 1948
5 TraesCS6D01G324400 chr5A 375290148 375292317 2169 True 3332 3332 94.480 563 2720 1 chr5A.!!$R1 2157
6 TraesCS6D01G324400 chr7B 549932260 549934408 2148 True 3168 3168 93.253 564 2720 1 chr7B.!!$R1 2156
7 TraesCS6D01G324400 chr1B 570456525 570458682 2157 True 3160 3160 93.124 563 2720 1 chr1B.!!$R1 2157
8 TraesCS6D01G324400 chr3D 515672359 515674175 1816 False 2939 2939 95.790 893 2720 1 chr3D.!!$F1 1827
9 TraesCS6D01G324400 chr2B 650493646 650495830 2184 False 2924 2924 90.992 558 2720 1 chr2B.!!$F1 2162
10 TraesCS6D01G324400 chr2B 394136564 394137755 1191 True 1707 1707 92.506 563 1758 1 chr2B.!!$R1 1195
11 TraesCS6D01G324400 chr2B 141838258 141838765 507 False 319 392 92.575 31 537 2 chr2B.!!$F3 506
12 TraesCS6D01G324400 chr2A 682196842 682198167 1325 False 1535 1535 87.611 561 1898 1 chr2A.!!$F2 1337
13 TraesCS6D01G324400 chr2A 603689299 603689809 510 False 643 643 89.453 563 1072 1 chr2A.!!$F1 509
14 TraesCS6D01G324400 chr4A 62460243 62460764 521 False 582 582 86.857 563 1084 1 chr4A.!!$F1 521

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
429 430 0.101759 GGCCGTGACTAGCGATGTAA 59.898 55.0 0.0 0.0 0.0 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2266 2339 0.992695 TCGACCTCTTCCTCCTCAGA 59.007 55.0 0.0 0.0 0.0 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.685841 ACCTGTGACAAATAATTCGAAACG 58.314 37.500 0.00 0.00 0.00 3.60
24 25 5.086058 CCTGTGACAAATAATTCGAAACGG 58.914 41.667 0.00 0.00 0.00 4.44
25 26 5.106869 CCTGTGACAAATAATTCGAAACGGA 60.107 40.000 0.00 0.00 0.00 4.69
26 27 5.922546 TGTGACAAATAATTCGAAACGGAG 58.077 37.500 0.00 0.00 0.00 4.63
27 28 5.106869 TGTGACAAATAATTCGAAACGGAGG 60.107 40.000 0.00 0.00 0.00 4.30
28 29 4.393680 TGACAAATAATTCGAAACGGAGGG 59.606 41.667 0.00 0.00 0.00 4.30
29 30 3.692593 ACAAATAATTCGAAACGGAGGGG 59.307 43.478 0.00 0.00 0.00 4.79
48 49 7.450074 GGAGGGGTACAAATTGAAGAAAAATT 58.550 34.615 0.00 0.00 0.00 1.82
94 95 4.252242 GCGAACATTGCGATCACG 57.748 55.556 0.00 0.00 42.93 4.35
95 96 1.296867 GCGAACATTGCGATCACGG 60.297 57.895 0.00 0.00 40.15 4.94
96 97 1.348250 CGAACATTGCGATCACGGG 59.652 57.895 0.00 0.00 40.15 5.28
97 98 1.081556 CGAACATTGCGATCACGGGA 61.082 55.000 0.00 0.00 40.15 5.14
98 99 0.652592 GAACATTGCGATCACGGGAG 59.347 55.000 0.00 0.00 40.15 4.30
99 100 1.369091 AACATTGCGATCACGGGAGC 61.369 55.000 0.00 0.00 40.15 4.70
100 101 2.203070 ATTGCGATCACGGGAGCC 60.203 61.111 0.00 0.00 40.15 4.70
101 102 3.030168 ATTGCGATCACGGGAGCCA 62.030 57.895 0.00 0.00 40.15 4.75
102 103 2.535485 ATTGCGATCACGGGAGCCAA 62.535 55.000 8.84 8.84 40.15 4.52
103 104 2.435938 GCGATCACGGGAGCCAAA 60.436 61.111 0.00 0.00 40.15 3.28
104 105 1.819632 GCGATCACGGGAGCCAAAT 60.820 57.895 0.00 0.00 40.15 2.32
105 106 1.776034 GCGATCACGGGAGCCAAATC 61.776 60.000 0.00 0.00 40.15 2.17
106 107 1.160329 CGATCACGGGAGCCAAATCC 61.160 60.000 0.00 0.00 38.76 3.01
107 108 0.181350 GATCACGGGAGCCAAATCCT 59.819 55.000 0.00 0.00 39.50 3.24
110 111 3.204827 CGGGAGCCAAATCCTGCG 61.205 66.667 0.00 0.00 38.87 5.18
111 112 3.521796 GGGAGCCAAATCCTGCGC 61.522 66.667 0.00 0.00 39.50 6.09
112 113 2.439156 GGAGCCAAATCCTGCGCT 60.439 61.111 9.73 0.00 36.35 5.92
113 114 1.153168 GGAGCCAAATCCTGCGCTA 60.153 57.895 9.73 0.00 36.35 4.26
114 115 1.440145 GGAGCCAAATCCTGCGCTAC 61.440 60.000 9.73 0.00 36.35 3.58
115 116 1.440145 GAGCCAAATCCTGCGCTACC 61.440 60.000 9.73 0.00 33.34 3.18
116 117 1.748879 GCCAAATCCTGCGCTACCA 60.749 57.895 9.73 0.00 0.00 3.25
117 118 1.103398 GCCAAATCCTGCGCTACCAT 61.103 55.000 9.73 0.00 0.00 3.55
118 119 0.664761 CCAAATCCTGCGCTACCATG 59.335 55.000 9.73 0.60 0.00 3.66
119 120 0.664761 CAAATCCTGCGCTACCATGG 59.335 55.000 11.19 11.19 0.00 3.66
120 121 0.546122 AAATCCTGCGCTACCATGGA 59.454 50.000 21.47 7.10 0.00 3.41
121 122 0.179045 AATCCTGCGCTACCATGGAC 60.179 55.000 21.47 6.42 0.00 4.02
122 123 2.369257 ATCCTGCGCTACCATGGACG 62.369 60.000 21.47 19.33 0.00 4.79
123 124 2.586079 CTGCGCTACCATGGACGG 60.586 66.667 21.47 8.82 0.00 4.79
124 125 4.155733 TGCGCTACCATGGACGGG 62.156 66.667 21.47 17.05 0.00 5.28
125 126 3.845259 GCGCTACCATGGACGGGA 61.845 66.667 21.47 0.00 0.00 5.14
126 127 2.106332 CGCTACCATGGACGGGAC 59.894 66.667 21.47 0.22 0.00 4.46
182 183 4.778143 GGCCGCCACGTCATCCTT 62.778 66.667 3.91 0.00 0.00 3.36
183 184 3.195698 GCCGCCACGTCATCCTTC 61.196 66.667 0.00 0.00 0.00 3.46
184 185 2.579201 CCGCCACGTCATCCTTCT 59.421 61.111 0.00 0.00 0.00 2.85
185 186 1.811266 CCGCCACGTCATCCTTCTG 60.811 63.158 0.00 0.00 0.00 3.02
186 187 1.811266 CGCCACGTCATCCTTCTGG 60.811 63.158 0.00 0.00 0.00 3.86
188 189 0.741221 GCCACGTCATCCTTCTGGAC 60.741 60.000 0.00 0.00 46.51 4.02
189 190 0.108138 CCACGTCATCCTTCTGGACC 60.108 60.000 0.00 0.00 46.51 4.46
190 191 0.458543 CACGTCATCCTTCTGGACCG 60.459 60.000 0.00 0.00 46.51 4.79
191 192 1.519455 CGTCATCCTTCTGGACCGC 60.519 63.158 0.00 0.00 46.51 5.68
192 193 1.153349 GTCATCCTTCTGGACCGCC 60.153 63.158 0.00 0.00 46.51 6.13
193 194 2.202932 CATCCTTCTGGACCGCCG 60.203 66.667 0.00 0.00 46.51 6.46
194 195 4.162690 ATCCTTCTGGACCGCCGC 62.163 66.667 0.00 0.00 46.51 6.53
197 198 4.473520 CTTCTGGACCGCCGCCAT 62.474 66.667 0.00 0.00 36.79 4.40
198 199 4.776322 TTCTGGACCGCCGCCATG 62.776 66.667 0.00 0.00 36.79 3.66
200 201 4.776322 CTGGACCGCCGCCATGAA 62.776 66.667 0.00 0.00 36.79 2.57
236 237 4.680237 CGCCGGACAGGTTGAGCA 62.680 66.667 5.05 0.00 43.70 4.26
237 238 2.281484 GCCGGACAGGTTGAGCAA 60.281 61.111 5.05 0.00 43.70 3.91
238 239 2.617274 GCCGGACAGGTTGAGCAAC 61.617 63.158 5.05 4.81 43.70 4.17
239 240 1.227823 CCGGACAGGTTGAGCAACA 60.228 57.895 14.55 0.00 42.85 3.33
240 241 1.507141 CCGGACAGGTTGAGCAACAC 61.507 60.000 14.55 5.04 42.85 3.32
241 242 1.507141 CGGACAGGTTGAGCAACACC 61.507 60.000 14.55 10.45 42.85 4.16
242 243 1.507141 GGACAGGTTGAGCAACACCG 61.507 60.000 14.55 5.31 42.85 4.94
243 244 1.507141 GACAGGTTGAGCAACACCGG 61.507 60.000 14.55 0.00 42.85 5.28
244 245 1.525995 CAGGTTGAGCAACACCGGT 60.526 57.895 0.00 0.00 42.85 5.28
245 246 1.525995 AGGTTGAGCAACACCGGTG 60.526 57.895 32.83 32.83 42.85 4.94
246 247 2.331451 GTTGAGCAACACCGGTGC 59.669 61.111 34.26 20.92 40.84 5.01
247 248 3.276091 TTGAGCAACACCGGTGCG 61.276 61.111 34.26 25.47 0.00 5.34
248 249 4.539083 TGAGCAACACCGGTGCGT 62.539 61.111 34.26 19.95 0.00 5.24
249 250 2.356553 GAGCAACACCGGTGCGTA 60.357 61.111 34.26 0.00 0.00 4.42
250 251 2.663852 AGCAACACCGGTGCGTAC 60.664 61.111 34.26 20.45 0.00 3.67
251 252 2.968156 GCAACACCGGTGCGTACA 60.968 61.111 34.26 0.00 0.00 2.90
252 253 2.950172 GCAACACCGGTGCGTACAG 61.950 63.158 34.26 17.62 0.00 2.74
262 263 3.497031 GCGTACAGCTTTCCGGCC 61.497 66.667 0.00 0.00 44.04 6.13
263 264 3.186047 CGTACAGCTTTCCGGCCG 61.186 66.667 21.04 21.04 0.00 6.13
264 265 2.818274 GTACAGCTTTCCGGCCGG 60.818 66.667 39.13 39.13 0.00 6.13
265 266 4.770874 TACAGCTTTCCGGCCGGC 62.771 66.667 39.89 26.98 34.68 6.13
278 279 4.869440 CCGGCTCAGCTGCTCTCG 62.869 72.222 9.47 9.93 32.89 4.04
317 318 4.962836 CCTCCGCCCCATGCCATC 62.963 72.222 0.00 0.00 36.24 3.51
318 319 4.962836 CTCCGCCCCATGCCATCC 62.963 72.222 0.00 0.00 36.24 3.51
321 322 3.569210 CGCCCCATGCCATCCCTA 61.569 66.667 0.00 0.00 36.24 3.53
322 323 2.910737 CGCCCCATGCCATCCCTAT 61.911 63.158 0.00 0.00 36.24 2.57
323 324 1.000396 GCCCCATGCCATCCCTATC 60.000 63.158 0.00 0.00 0.00 2.08
324 325 1.300963 CCCCATGCCATCCCTATCG 59.699 63.158 0.00 0.00 0.00 2.92
325 326 1.300963 CCCATGCCATCCCTATCGG 59.699 63.158 0.00 0.00 0.00 4.18
327 328 0.251354 CCATGCCATCCCTATCGGAG 59.749 60.000 0.00 0.00 46.60 4.63
328 329 1.269958 CATGCCATCCCTATCGGAGA 58.730 55.000 0.00 0.00 46.60 3.71
329 330 1.836166 CATGCCATCCCTATCGGAGAT 59.164 52.381 0.00 0.00 46.60 2.75
330 331 2.030027 TGCCATCCCTATCGGAGATT 57.970 50.000 0.00 0.00 46.60 2.40
331 332 2.338809 TGCCATCCCTATCGGAGATTT 58.661 47.619 0.00 0.00 46.60 2.17
332 333 2.303022 TGCCATCCCTATCGGAGATTTC 59.697 50.000 0.00 0.00 46.60 2.17
333 334 2.675317 GCCATCCCTATCGGAGATTTCG 60.675 54.545 0.00 0.00 46.60 3.46
334 335 2.611518 CATCCCTATCGGAGATTTCGC 58.388 52.381 0.00 0.00 46.60 4.70
335 336 0.966920 TCCCTATCGGAGATTTCGCC 59.033 55.000 0.00 0.00 45.12 5.54
336 337 0.969894 CCCTATCGGAGATTTCGCCT 59.030 55.000 0.00 0.00 45.12 5.52
337 338 1.337260 CCCTATCGGAGATTTCGCCTG 60.337 57.143 0.00 0.00 45.12 4.85
338 339 1.337260 CCTATCGGAGATTTCGCCTGG 60.337 57.143 0.00 0.00 45.12 4.45
339 340 1.613925 CTATCGGAGATTTCGCCTGGA 59.386 52.381 0.00 0.00 45.12 3.86
340 341 1.051812 ATCGGAGATTTCGCCTGGAT 58.948 50.000 0.00 0.00 45.12 3.41
341 342 0.104855 TCGGAGATTTCGCCTGGATG 59.895 55.000 0.00 0.00 33.34 3.51
342 343 0.882042 CGGAGATTTCGCCTGGATGG 60.882 60.000 0.00 0.00 39.35 3.51
343 344 0.469917 GGAGATTTCGCCTGGATGGA 59.530 55.000 0.00 0.00 38.35 3.41
344 345 1.542108 GGAGATTTCGCCTGGATGGAG 60.542 57.143 0.00 0.00 38.35 3.86
345 346 1.414181 GAGATTTCGCCTGGATGGAGA 59.586 52.381 0.00 0.00 42.95 3.71
346 347 1.415659 AGATTTCGCCTGGATGGAGAG 59.584 52.381 0.00 0.00 45.21 3.20
347 348 1.414181 GATTTCGCCTGGATGGAGAGA 59.586 52.381 0.00 0.00 45.21 3.10
348 349 1.500474 TTTCGCCTGGATGGAGAGAT 58.500 50.000 0.00 0.00 45.21 2.75
349 350 1.500474 TTCGCCTGGATGGAGAGATT 58.500 50.000 0.00 0.00 45.21 2.40
350 351 0.755079 TCGCCTGGATGGAGAGATTG 59.245 55.000 0.00 0.00 39.76 2.67
351 352 0.755079 CGCCTGGATGGAGAGATTGA 59.245 55.000 0.00 0.00 37.90 2.57
352 353 1.347050 CGCCTGGATGGAGAGATTGAT 59.653 52.381 0.00 0.00 37.90 2.57
353 354 2.780714 GCCTGGATGGAGAGATTGATG 58.219 52.381 0.00 0.00 38.35 3.07
354 355 2.371179 GCCTGGATGGAGAGATTGATGA 59.629 50.000 0.00 0.00 38.35 2.92
355 356 3.557475 GCCTGGATGGAGAGATTGATGAG 60.557 52.174 0.00 0.00 38.35 2.90
356 357 3.008157 CCTGGATGGAGAGATTGATGAGG 59.992 52.174 0.00 0.00 38.35 3.86
357 358 3.902467 CTGGATGGAGAGATTGATGAGGA 59.098 47.826 0.00 0.00 0.00 3.71
358 359 3.902467 TGGATGGAGAGATTGATGAGGAG 59.098 47.826 0.00 0.00 0.00 3.69
359 360 4.158786 GGATGGAGAGATTGATGAGGAGA 58.841 47.826 0.00 0.00 0.00 3.71
360 361 4.778958 GGATGGAGAGATTGATGAGGAGAT 59.221 45.833 0.00 0.00 0.00 2.75
361 362 5.337733 GGATGGAGAGATTGATGAGGAGATG 60.338 48.000 0.00 0.00 0.00 2.90
362 363 3.902467 TGGAGAGATTGATGAGGAGATGG 59.098 47.826 0.00 0.00 0.00 3.51
363 364 3.903090 GGAGAGATTGATGAGGAGATGGT 59.097 47.826 0.00 0.00 0.00 3.55
364 365 4.262549 GGAGAGATTGATGAGGAGATGGTG 60.263 50.000 0.00 0.00 0.00 4.17
365 366 3.647113 AGAGATTGATGAGGAGATGGTGG 59.353 47.826 0.00 0.00 0.00 4.61
366 367 2.709934 AGATTGATGAGGAGATGGTGGG 59.290 50.000 0.00 0.00 0.00 4.61
367 368 1.216064 TTGATGAGGAGATGGTGGGG 58.784 55.000 0.00 0.00 0.00 4.96
368 369 1.348008 TGATGAGGAGATGGTGGGGC 61.348 60.000 0.00 0.00 0.00 5.80
369 370 1.308128 ATGAGGAGATGGTGGGGCA 60.308 57.895 0.00 0.00 0.00 5.36
370 371 1.351080 ATGAGGAGATGGTGGGGCAG 61.351 60.000 0.00 0.00 0.00 4.85
371 372 1.690633 GAGGAGATGGTGGGGCAGA 60.691 63.158 0.00 0.00 0.00 4.26
372 373 1.229951 AGGAGATGGTGGGGCAGAA 60.230 57.895 0.00 0.00 0.00 3.02
373 374 1.225704 GGAGATGGTGGGGCAGAAG 59.774 63.158 0.00 0.00 0.00 2.85
374 375 1.225704 GAGATGGTGGGGCAGAAGG 59.774 63.158 0.00 0.00 0.00 3.46
375 376 2.440980 GATGGTGGGGCAGAAGGC 60.441 66.667 0.00 0.00 43.74 4.35
376 377 4.431131 ATGGTGGGGCAGAAGGCG 62.431 66.667 0.00 0.00 46.16 5.52
378 379 4.785453 GGTGGGGCAGAAGGCGAG 62.785 72.222 0.00 0.00 46.16 5.03
379 380 3.706373 GTGGGGCAGAAGGCGAGA 61.706 66.667 0.00 0.00 46.16 4.04
380 381 2.927856 TGGGGCAGAAGGCGAGAA 60.928 61.111 0.00 0.00 46.16 2.87
381 382 2.124942 GGGGCAGAAGGCGAGAAG 60.125 66.667 0.00 0.00 46.16 2.85
382 383 2.660064 GGGGCAGAAGGCGAGAAGA 61.660 63.158 0.00 0.00 46.16 2.87
383 384 1.296715 GGGCAGAAGGCGAGAAGAA 59.703 57.895 0.00 0.00 46.16 2.52
384 385 0.321653 GGGCAGAAGGCGAGAAGAAA 60.322 55.000 0.00 0.00 46.16 2.52
385 386 0.799393 GGCAGAAGGCGAGAAGAAAC 59.201 55.000 0.00 0.00 46.16 2.78
386 387 1.512926 GCAGAAGGCGAGAAGAAACA 58.487 50.000 0.00 0.00 0.00 2.83
387 388 1.195674 GCAGAAGGCGAGAAGAAACAC 59.804 52.381 0.00 0.00 0.00 3.32
388 389 1.457303 CAGAAGGCGAGAAGAAACACG 59.543 52.381 0.00 0.00 0.00 4.49
389 390 1.340248 AGAAGGCGAGAAGAAACACGA 59.660 47.619 0.00 0.00 0.00 4.35
390 391 1.721926 GAAGGCGAGAAGAAACACGAG 59.278 52.381 0.00 0.00 0.00 4.18
391 392 0.959553 AGGCGAGAAGAAACACGAGA 59.040 50.000 0.00 0.00 0.00 4.04
392 393 1.546476 AGGCGAGAAGAAACACGAGAT 59.454 47.619 0.00 0.00 0.00 2.75
393 394 2.028930 AGGCGAGAAGAAACACGAGATT 60.029 45.455 0.00 0.00 0.00 2.40
394 395 2.345942 GGCGAGAAGAAACACGAGATTC 59.654 50.000 0.00 0.00 0.00 2.52
395 396 2.026978 GCGAGAAGAAACACGAGATTCG 59.973 50.000 0.00 0.00 46.93 3.34
396 397 2.594654 CGAGAAGAAACACGAGATTCGG 59.405 50.000 3.37 0.00 45.59 4.30
400 401 1.076332 GAAACACGAGATTCGGGGTG 58.924 55.000 5.66 1.51 45.93 4.61
401 402 0.321298 AAACACGAGATTCGGGGTGG 60.321 55.000 5.66 0.00 45.93 4.61
402 403 2.180159 AACACGAGATTCGGGGTGGG 62.180 60.000 5.66 0.00 44.32 4.61
403 404 3.782443 ACGAGATTCGGGGTGGGC 61.782 66.667 3.37 0.00 45.59 5.36
404 405 4.891727 CGAGATTCGGGGTGGGCG 62.892 72.222 0.00 0.00 36.00 6.13
405 406 4.547367 GAGATTCGGGGTGGGCGG 62.547 72.222 0.00 0.00 0.00 6.13
407 408 3.472726 GATTCGGGGTGGGCGGTA 61.473 66.667 0.00 0.00 0.00 4.02
408 409 2.770904 ATTCGGGGTGGGCGGTAT 60.771 61.111 0.00 0.00 0.00 2.73
409 410 2.726822 GATTCGGGGTGGGCGGTATC 62.727 65.000 0.00 0.00 0.00 2.24
420 421 3.424300 CGGTATCGGCCGTGACTA 58.576 61.111 27.15 5.24 46.11 2.59
421 422 1.281960 CGGTATCGGCCGTGACTAG 59.718 63.158 27.15 16.86 46.11 2.57
422 423 1.007618 GGTATCGGCCGTGACTAGC 60.008 63.158 27.15 17.18 0.00 3.42
423 424 1.370172 GTATCGGCCGTGACTAGCG 60.370 63.158 27.15 0.00 0.00 4.26
424 425 1.524393 TATCGGCCGTGACTAGCGA 60.524 57.895 27.15 1.58 0.00 4.93
425 426 0.887836 TATCGGCCGTGACTAGCGAT 60.888 55.000 27.15 10.34 0.00 4.58
426 427 2.407846 ATCGGCCGTGACTAGCGATG 62.408 60.000 27.15 0.00 0.00 3.84
427 428 2.494918 GGCCGTGACTAGCGATGT 59.505 61.111 0.00 0.00 0.00 3.06
428 429 1.731700 GGCCGTGACTAGCGATGTA 59.268 57.895 0.00 0.00 0.00 2.29
429 430 0.101759 GGCCGTGACTAGCGATGTAA 59.898 55.000 0.00 0.00 0.00 2.41
430 431 1.269621 GGCCGTGACTAGCGATGTAAT 60.270 52.381 0.00 0.00 0.00 1.89
431 432 2.052157 GCCGTGACTAGCGATGTAATC 58.948 52.381 0.00 0.00 40.89 1.75
448 449 5.338614 GTAATCGGATTACATGGAAACGG 57.661 43.478 27.65 8.38 43.50 4.44
449 450 3.553828 ATCGGATTACATGGAAACGGT 57.446 42.857 15.47 7.93 0.00 4.83
450 451 3.337694 TCGGATTACATGGAAACGGTT 57.662 42.857 15.47 0.00 0.00 4.44
451 452 3.677190 TCGGATTACATGGAAACGGTTT 58.323 40.909 15.47 5.68 0.00 3.27
452 453 4.829968 TCGGATTACATGGAAACGGTTTA 58.170 39.130 15.47 0.00 0.00 2.01
453 454 4.630940 TCGGATTACATGGAAACGGTTTAC 59.369 41.667 15.47 8.93 0.00 2.01
470 471 2.902846 CGGCCCACGTGAACCAAA 60.903 61.111 19.30 0.00 37.93 3.28
471 472 2.725641 GGCCCACGTGAACCAAAC 59.274 61.111 19.30 0.00 0.00 2.93
472 473 2.122167 GGCCCACGTGAACCAAACA 61.122 57.895 19.30 0.00 0.00 2.83
473 474 1.065109 GCCCACGTGAACCAAACAC 59.935 57.895 19.30 0.00 35.26 3.32
474 475 1.381165 GCCCACGTGAACCAAACACT 61.381 55.000 19.30 0.00 36.29 3.55
475 476 1.099689 CCCACGTGAACCAAACACTT 58.900 50.000 19.30 0.00 36.29 3.16
476 477 1.202245 CCCACGTGAACCAAACACTTG 60.202 52.381 19.30 0.00 37.30 3.16
477 478 1.470890 CCACGTGAACCAAACACTTGT 59.529 47.619 19.30 0.00 36.33 3.16
478 479 2.678836 CCACGTGAACCAAACACTTGTA 59.321 45.455 19.30 0.00 36.33 2.41
479 480 3.127203 CCACGTGAACCAAACACTTGTAA 59.873 43.478 19.30 0.00 36.33 2.41
480 481 4.092816 CACGTGAACCAAACACTTGTAAC 58.907 43.478 10.90 0.00 34.41 2.50
481 482 3.181518 ACGTGAACCAAACACTTGTAACG 60.182 43.478 0.00 0.00 36.29 3.18
482 483 3.181518 CGTGAACCAAACACTTGTAACGT 60.182 43.478 0.00 0.00 36.29 3.99
483 484 4.669708 CGTGAACCAAACACTTGTAACGTT 60.670 41.667 5.88 5.88 36.29 3.99
484 485 5.155643 GTGAACCAAACACTTGTAACGTTT 58.844 37.500 5.91 0.00 35.66 3.60
485 486 5.630264 GTGAACCAAACACTTGTAACGTTTT 59.370 36.000 5.91 0.00 35.66 2.43
486 487 5.857517 TGAACCAAACACTTGTAACGTTTTC 59.142 36.000 5.91 0.77 30.66 2.29
487 488 5.373981 ACCAAACACTTGTAACGTTTTCA 57.626 34.783 5.91 3.78 30.66 2.69
488 489 5.770417 ACCAAACACTTGTAACGTTTTCAA 58.230 33.333 5.91 11.77 30.66 2.69
489 490 5.859648 ACCAAACACTTGTAACGTTTTCAAG 59.140 36.000 28.05 28.05 42.60 3.02
491 492 6.363896 CCAAACACTTGTAACGTTTTCAAGTT 59.636 34.615 30.55 23.24 45.97 2.66
492 493 7.537991 CCAAACACTTGTAACGTTTTCAAGTTA 59.462 33.333 30.55 4.36 45.97 2.24
493 494 8.360132 CAAACACTTGTAACGTTTTCAAGTTAC 58.640 33.333 30.55 14.68 45.97 2.50
498 499 5.142635 GTAACGTTTTCAAGTTACGGTGT 57.857 39.130 5.91 0.00 41.84 4.16
499 500 6.267500 GTAACGTTTTCAAGTTACGGTGTA 57.733 37.500 5.91 0.00 41.84 2.90
500 501 5.793026 AACGTTTTCAAGTTACGGTGTAA 57.207 34.783 0.00 0.00 39.45 2.41
501 502 5.989551 ACGTTTTCAAGTTACGGTGTAAT 57.010 34.783 0.00 0.00 39.45 1.89
502 503 5.977731 ACGTTTTCAAGTTACGGTGTAATC 58.022 37.500 0.00 0.00 39.45 1.75
503 504 5.523188 ACGTTTTCAAGTTACGGTGTAATCA 59.477 36.000 0.00 0.00 39.45 2.57
504 505 6.068931 CGTTTTCAAGTTACGGTGTAATCAG 58.931 40.000 0.00 0.00 0.00 2.90
505 506 6.368213 GTTTTCAAGTTACGGTGTAATCAGG 58.632 40.000 0.00 0.00 0.00 3.86
506 507 4.877378 TCAAGTTACGGTGTAATCAGGT 57.123 40.909 0.00 0.00 0.00 4.00
507 508 5.217978 TCAAGTTACGGTGTAATCAGGTT 57.782 39.130 0.00 0.00 0.00 3.50
508 509 6.343716 TCAAGTTACGGTGTAATCAGGTTA 57.656 37.500 0.00 0.00 0.00 2.85
509 510 6.158598 TCAAGTTACGGTGTAATCAGGTTAC 58.841 40.000 0.00 0.00 42.47 2.50
510 511 4.737054 AGTTACGGTGTAATCAGGTTACG 58.263 43.478 0.00 0.00 44.58 3.18
511 512 2.660189 ACGGTGTAATCAGGTTACGG 57.340 50.000 0.00 0.00 44.58 4.02
512 513 1.205417 ACGGTGTAATCAGGTTACGGG 59.795 52.381 0.00 0.00 44.58 5.28
513 514 1.660167 GGTGTAATCAGGTTACGGGC 58.340 55.000 0.00 0.00 44.58 6.13
514 515 1.660167 GTGTAATCAGGTTACGGGCC 58.340 55.000 0.00 0.00 44.58 5.80
515 516 1.065998 GTGTAATCAGGTTACGGGCCA 60.066 52.381 4.39 0.00 44.58 5.36
516 517 1.629353 TGTAATCAGGTTACGGGCCAA 59.371 47.619 4.39 0.00 44.58 4.52
517 518 2.040012 TGTAATCAGGTTACGGGCCAAA 59.960 45.455 4.39 0.00 44.58 3.28
518 519 2.296073 AATCAGGTTACGGGCCAAAA 57.704 45.000 4.39 0.00 0.00 2.44
519 520 2.525105 ATCAGGTTACGGGCCAAAAT 57.475 45.000 4.39 0.00 0.00 1.82
520 521 2.296073 TCAGGTTACGGGCCAAAATT 57.704 45.000 4.39 0.00 0.00 1.82
521 522 1.889829 TCAGGTTACGGGCCAAAATTG 59.110 47.619 4.39 0.65 0.00 2.32
522 523 1.889829 CAGGTTACGGGCCAAAATTGA 59.110 47.619 4.39 0.00 0.00 2.57
523 524 2.495669 CAGGTTACGGGCCAAAATTGAT 59.504 45.455 4.39 0.00 0.00 2.57
524 525 2.495669 AGGTTACGGGCCAAAATTGATG 59.504 45.455 4.39 0.00 0.00 3.07
525 526 2.494073 GGTTACGGGCCAAAATTGATGA 59.506 45.455 4.39 0.00 0.00 2.92
526 527 3.056465 GGTTACGGGCCAAAATTGATGAA 60.056 43.478 4.39 0.00 0.00 2.57
527 528 2.741759 ACGGGCCAAAATTGATGAAC 57.258 45.000 4.39 0.00 0.00 3.18
528 529 1.275010 ACGGGCCAAAATTGATGAACC 59.725 47.619 4.39 0.00 0.00 3.62
529 530 1.274728 CGGGCCAAAATTGATGAACCA 59.725 47.619 4.39 0.00 0.00 3.67
530 531 2.289320 CGGGCCAAAATTGATGAACCAA 60.289 45.455 4.39 0.00 0.00 3.67
531 532 3.749226 GGGCCAAAATTGATGAACCAAA 58.251 40.909 4.39 0.00 0.00 3.28
532 533 3.501828 GGGCCAAAATTGATGAACCAAAC 59.498 43.478 4.39 0.00 0.00 2.93
533 534 4.133078 GGCCAAAATTGATGAACCAAACA 58.867 39.130 0.00 0.00 0.00 2.83
534 535 4.024133 GGCCAAAATTGATGAACCAAACAC 60.024 41.667 0.00 0.00 0.00 3.32
535 536 4.024133 GCCAAAATTGATGAACCAAACACC 60.024 41.667 0.00 0.00 0.00 4.16
536 537 5.367302 CCAAAATTGATGAACCAAACACCT 58.633 37.500 0.00 0.00 0.00 4.00
537 538 5.821995 CCAAAATTGATGAACCAAACACCTT 59.178 36.000 0.00 0.00 0.00 3.50
538 539 6.018016 CCAAAATTGATGAACCAAACACCTTC 60.018 38.462 0.00 0.00 0.00 3.46
539 540 5.867903 AATTGATGAACCAAACACCTTCA 57.132 34.783 0.00 0.00 0.00 3.02
540 541 6.423776 AATTGATGAACCAAACACCTTCAT 57.576 33.333 0.00 0.00 37.34 2.57
541 542 4.852134 TGATGAACCAAACACCTTCATG 57.148 40.909 0.00 0.00 35.27 3.07
542 543 3.573538 TGATGAACCAAACACCTTCATGG 59.426 43.478 0.00 0.00 35.27 3.66
543 544 3.304911 TGAACCAAACACCTTCATGGA 57.695 42.857 0.00 0.00 39.71 3.41
544 545 2.955660 TGAACCAAACACCTTCATGGAC 59.044 45.455 0.00 0.00 39.71 4.02
545 546 2.746279 ACCAAACACCTTCATGGACA 57.254 45.000 0.00 0.00 39.71 4.02
546 547 2.306847 ACCAAACACCTTCATGGACAC 58.693 47.619 0.00 0.00 39.71 3.67
547 548 1.613437 CCAAACACCTTCATGGACACC 59.387 52.381 0.00 0.00 39.71 4.16
548 549 2.586425 CAAACACCTTCATGGACACCT 58.414 47.619 0.00 0.00 39.71 4.00
549 550 3.497763 CCAAACACCTTCATGGACACCTA 60.498 47.826 0.00 0.00 39.71 3.08
550 551 3.703001 AACACCTTCATGGACACCTAG 57.297 47.619 0.00 0.00 39.71 3.02
551 552 2.902608 ACACCTTCATGGACACCTAGA 58.097 47.619 0.00 0.00 39.71 2.43
552 553 2.834549 ACACCTTCATGGACACCTAGAG 59.165 50.000 0.00 0.00 39.71 2.43
553 554 3.099905 CACCTTCATGGACACCTAGAGA 58.900 50.000 0.00 0.00 39.71 3.10
554 555 3.708631 CACCTTCATGGACACCTAGAGAT 59.291 47.826 0.00 0.00 39.71 2.75
555 556 3.708631 ACCTTCATGGACACCTAGAGATG 59.291 47.826 0.00 0.00 39.71 2.90
556 557 3.070734 CCTTCATGGACACCTAGAGATGG 59.929 52.174 0.00 0.00 38.35 3.51
557 558 3.688049 TCATGGACACCTAGAGATGGA 57.312 47.619 0.00 0.00 0.00 3.41
561 562 2.225267 TGGACACCTAGAGATGGACACA 60.225 50.000 0.00 0.00 0.00 3.72
728 729 3.016474 GCAGTTTCTCGCGAGCCAC 62.016 63.158 30.97 26.23 0.00 5.01
922 934 3.363772 GCTGTGATTTCAGATATGCGCTC 60.364 47.826 9.73 0.00 37.61 5.03
979 1018 2.441164 TTGCTGTTGGCCACCGTT 60.441 55.556 3.88 0.00 40.92 4.44
998 1037 1.254026 TTGGTCGACCTACTCTGTGG 58.746 55.000 33.39 0.00 36.82 4.17
1093 1136 2.943690 GTTAGGCCTTTAAGCTAGGTGC 59.056 50.000 12.58 0.00 43.29 5.01
1203 1246 1.915489 AGTGTGATTCAGGCATGGGTA 59.085 47.619 0.00 0.00 0.00 3.69
1233 1276 0.889638 ACCAGAGAGCTGTTCGTCGA 60.890 55.000 0.00 0.00 40.63 4.20
1262 1306 1.141881 CGTTGAGCCGCTATGGTCT 59.858 57.895 0.00 0.00 41.21 3.85
1404 1476 3.655211 AGGAGCAGGGGCCTGTTG 61.655 66.667 0.84 0.79 45.24 3.33
1464 1536 2.746279 TGTTCCTCCATGTTGTTGGT 57.254 45.000 0.00 0.00 38.01 3.67
1517 1589 2.169352 CGTTCAGGAGGTCAATGGAGAT 59.831 50.000 0.00 0.00 0.00 2.75
1804 1876 0.994995 GTCACAGTCTGCAGCATACG 59.005 55.000 9.47 1.96 0.00 3.06
1876 1948 5.682234 TGATCTGAGGTTCACATATGTGT 57.318 39.130 30.03 14.93 45.76 3.72
1891 1963 4.666253 TGTTGGCTGGCTGGGAGC 62.666 66.667 2.00 0.00 41.46 4.70
1975 2047 1.203052 CCGACGGCAAGTTCTACCTTA 59.797 52.381 0.00 0.00 0.00 2.69
2034 2106 2.993863 ACCCTTCAGGAAAACCAGGTAT 59.006 45.455 0.00 0.00 39.89 2.73
2105 2178 4.825422 CTGCTTAATCTCAGACACTCCAA 58.175 43.478 0.00 0.00 32.26 3.53
2182 2255 1.634973 TGGATCAGAAGCCATTCCACA 59.365 47.619 0.00 0.00 35.57 4.17
2203 2276 4.349930 ACACATACCCCACTCAAGTTAAGT 59.650 41.667 0.00 0.00 0.00 2.24
2266 2339 0.951558 GGGCTTTGATGAACACGTGT 59.048 50.000 17.22 17.22 0.00 4.49
2607 2756 5.003804 ACTGTCATTGTTTAACTAGCTGGG 58.996 41.667 0.85 0.00 0.00 4.45
2639 2792 5.247337 TCAGATTATGTGTGGTAAGGTCACA 59.753 40.000 0.00 0.00 44.29 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.106869 CCTCCGTTTCGAATTATTTGTCACA 60.107 40.000 0.00 0.00 0.00 3.58
7 8 3.692593 CCCCTCCGTTTCGAATTATTTGT 59.307 43.478 0.00 0.00 0.00 2.83
8 9 3.692593 ACCCCTCCGTTTCGAATTATTTG 59.307 43.478 0.00 0.00 0.00 2.32
9 10 3.959293 ACCCCTCCGTTTCGAATTATTT 58.041 40.909 0.00 0.00 0.00 1.40
10 11 3.639672 ACCCCTCCGTTTCGAATTATT 57.360 42.857 0.00 0.00 0.00 1.40
11 12 3.451902 TGTACCCCTCCGTTTCGAATTAT 59.548 43.478 0.00 0.00 0.00 1.28
12 13 2.830923 TGTACCCCTCCGTTTCGAATTA 59.169 45.455 0.00 0.00 0.00 1.40
13 14 1.624813 TGTACCCCTCCGTTTCGAATT 59.375 47.619 0.00 0.00 0.00 2.17
14 15 1.269012 TGTACCCCTCCGTTTCGAAT 58.731 50.000 0.00 0.00 0.00 3.34
15 16 1.047002 TTGTACCCCTCCGTTTCGAA 58.953 50.000 0.00 0.00 0.00 3.71
16 17 1.047002 TTTGTACCCCTCCGTTTCGA 58.953 50.000 0.00 0.00 0.00 3.71
17 18 2.103537 ATTTGTACCCCTCCGTTTCG 57.896 50.000 0.00 0.00 0.00 3.46
18 19 3.414269 TCAATTTGTACCCCTCCGTTTC 58.586 45.455 0.00 0.00 0.00 2.78
19 20 3.512219 TCAATTTGTACCCCTCCGTTT 57.488 42.857 0.00 0.00 0.00 3.60
20 21 3.073356 TCTTCAATTTGTACCCCTCCGTT 59.927 43.478 0.00 0.00 0.00 4.44
21 22 2.640826 TCTTCAATTTGTACCCCTCCGT 59.359 45.455 0.00 0.00 0.00 4.69
22 23 3.343941 TCTTCAATTTGTACCCCTCCG 57.656 47.619 0.00 0.00 0.00 4.63
23 24 6.413783 TTTTTCTTCAATTTGTACCCCTCC 57.586 37.500 0.00 0.00 0.00 4.30
26 27 9.936759 TGATAATTTTTCTTCAATTTGTACCCC 57.063 29.630 0.00 0.00 0.00 4.95
48 49 3.253188 GCAAGGCTGTTGTTCTTGTGATA 59.747 43.478 0.00 0.00 39.80 2.15
57 58 0.316204 GCTGATGCAAGGCTGTTGTT 59.684 50.000 0.00 0.00 39.41 2.83
58 59 1.859427 CGCTGATGCAAGGCTGTTGT 61.859 55.000 0.00 0.00 39.64 3.32
59 60 1.154093 CGCTGATGCAAGGCTGTTG 60.154 57.895 0.00 0.00 39.64 3.33
88 89 0.181350 AGGATTTGGCTCCCGTGATC 59.819 55.000 0.00 0.00 35.79 2.92
89 90 0.107017 CAGGATTTGGCTCCCGTGAT 60.107 55.000 0.00 0.00 35.79 3.06
90 91 1.299648 CAGGATTTGGCTCCCGTGA 59.700 57.895 0.00 0.00 35.79 4.35
91 92 2.409870 GCAGGATTTGGCTCCCGTG 61.410 63.158 0.00 0.00 35.79 4.94
92 93 2.044946 GCAGGATTTGGCTCCCGT 60.045 61.111 0.00 0.00 35.79 5.28
93 94 3.204827 CGCAGGATTTGGCTCCCG 61.205 66.667 0.00 0.00 35.79 5.14
94 95 2.608970 TAGCGCAGGATTTGGCTCCC 62.609 60.000 11.47 0.00 35.79 4.30
95 96 1.153168 TAGCGCAGGATTTGGCTCC 60.153 57.895 11.47 0.00 35.69 4.70
96 97 1.440145 GGTAGCGCAGGATTTGGCTC 61.440 60.000 11.47 0.00 35.69 4.70
97 98 1.452108 GGTAGCGCAGGATTTGGCT 60.452 57.895 11.47 0.00 37.21 4.75
98 99 1.103398 ATGGTAGCGCAGGATTTGGC 61.103 55.000 11.47 0.00 0.00 4.52
99 100 0.664761 CATGGTAGCGCAGGATTTGG 59.335 55.000 11.47 0.00 0.00 3.28
100 101 0.664761 CCATGGTAGCGCAGGATTTG 59.335 55.000 11.47 0.00 0.00 2.32
101 102 0.546122 TCCATGGTAGCGCAGGATTT 59.454 50.000 11.47 0.00 0.00 2.17
102 103 0.179045 GTCCATGGTAGCGCAGGATT 60.179 55.000 11.47 0.00 0.00 3.01
103 104 1.447643 GTCCATGGTAGCGCAGGAT 59.552 57.895 11.47 0.00 0.00 3.24
104 105 2.900273 GTCCATGGTAGCGCAGGA 59.100 61.111 11.47 3.76 0.00 3.86
105 106 2.586079 CGTCCATGGTAGCGCAGG 60.586 66.667 11.47 1.04 0.00 4.85
106 107 2.586079 CCGTCCATGGTAGCGCAG 60.586 66.667 11.47 0.54 0.00 5.18
107 108 4.155733 CCCGTCCATGGTAGCGCA 62.156 66.667 11.47 0.00 0.00 6.09
108 109 3.845259 TCCCGTCCATGGTAGCGC 61.845 66.667 12.58 0.00 0.00 5.92
109 110 2.106332 GTCCCGTCCATGGTAGCG 59.894 66.667 12.58 14.38 0.00 4.26
110 111 2.106332 CGTCCCGTCCATGGTAGC 59.894 66.667 12.58 2.68 0.00 3.58
111 112 2.812499 CCGTCCCGTCCATGGTAG 59.188 66.667 12.58 6.94 0.00 3.18
112 113 3.463585 GCCGTCCCGTCCATGGTA 61.464 66.667 12.58 0.00 0.00 3.25
165 166 4.778143 AAGGATGACGTGGCGGCC 62.778 66.667 13.32 13.32 31.60 6.13
166 167 3.195698 GAAGGATGACGTGGCGGC 61.196 66.667 0.00 0.00 34.27 6.53
167 168 1.811266 CAGAAGGATGACGTGGCGG 60.811 63.158 0.00 0.00 0.00 6.13
168 169 1.811266 CCAGAAGGATGACGTGGCG 60.811 63.158 0.00 0.00 36.89 5.69
169 170 1.596934 TCCAGAAGGATGACGTGGC 59.403 57.895 0.00 0.00 39.61 5.01
180 181 4.473520 ATGGCGGCGGTCCAGAAG 62.474 66.667 9.78 0.00 36.98 2.85
181 182 4.776322 CATGGCGGCGGTCCAGAA 62.776 66.667 9.78 0.00 36.98 3.02
183 184 4.776322 TTCATGGCGGCGGTCCAG 62.776 66.667 9.78 3.12 36.98 3.86
219 220 4.680237 TGCTCAACCTGTCCGGCG 62.680 66.667 0.00 0.00 35.61 6.46
220 221 2.281484 TTGCTCAACCTGTCCGGC 60.281 61.111 0.00 0.00 35.61 6.13
221 222 1.227823 TGTTGCTCAACCTGTCCGG 60.228 57.895 9.92 0.00 40.46 5.14
222 223 1.507141 GGTGTTGCTCAACCTGTCCG 61.507 60.000 9.92 0.00 40.46 4.79
223 224 1.507141 CGGTGTTGCTCAACCTGTCC 61.507 60.000 9.92 6.75 40.46 4.02
224 225 1.507141 CCGGTGTTGCTCAACCTGTC 61.507 60.000 9.92 0.00 40.46 3.51
225 226 1.525995 CCGGTGTTGCTCAACCTGT 60.526 57.895 9.92 0.00 40.46 4.00
226 227 1.525995 ACCGGTGTTGCTCAACCTG 60.526 57.895 6.12 6.67 40.46 4.00
227 228 1.525995 CACCGGTGTTGCTCAACCT 60.526 57.895 26.95 0.00 40.46 3.50
228 229 3.030652 CACCGGTGTTGCTCAACC 58.969 61.111 26.95 2.37 40.46 3.77
229 230 2.331451 GCACCGGTGTTGCTCAAC 59.669 61.111 33.92 12.44 41.50 3.18
230 231 2.646117 TACGCACCGGTGTTGCTCAA 62.646 55.000 33.92 11.50 38.92 3.02
231 232 3.153270 TACGCACCGGTGTTGCTCA 62.153 57.895 33.92 13.84 38.92 4.26
232 233 2.356553 TACGCACCGGTGTTGCTC 60.357 61.111 33.92 16.98 38.92 4.26
233 234 2.663852 GTACGCACCGGTGTTGCT 60.664 61.111 33.92 18.72 38.92 3.91
234 235 2.950172 CTGTACGCACCGGTGTTGC 61.950 63.158 33.92 24.05 38.92 4.17
235 236 2.950172 GCTGTACGCACCGGTGTTG 61.950 63.158 33.92 27.59 38.92 3.33
236 237 2.653953 AAGCTGTACGCACCGGTGTT 62.654 55.000 33.92 23.56 42.61 3.32
237 238 2.653953 AAAGCTGTACGCACCGGTGT 62.654 55.000 33.92 19.11 42.61 4.16
238 239 1.897398 GAAAGCTGTACGCACCGGTG 61.897 60.000 30.66 30.66 42.61 4.94
239 240 1.666872 GAAAGCTGTACGCACCGGT 60.667 57.895 0.00 0.00 42.61 5.28
240 241 2.388232 GGAAAGCTGTACGCACCGG 61.388 63.158 0.00 0.00 42.61 5.28
241 242 2.726691 CGGAAAGCTGTACGCACCG 61.727 63.158 18.59 18.59 42.11 4.94
242 243 2.388232 CCGGAAAGCTGTACGCACC 61.388 63.158 1.77 9.92 42.61 5.01
243 244 3.023591 GCCGGAAAGCTGTACGCAC 62.024 63.158 5.05 0.00 42.61 5.34
244 245 2.740826 GCCGGAAAGCTGTACGCA 60.741 61.111 5.05 0.00 42.61 5.24
245 246 3.497031 GGCCGGAAAGCTGTACGC 61.497 66.667 5.05 0.00 39.57 4.42
246 247 3.186047 CGGCCGGAAAGCTGTACG 61.186 66.667 20.10 0.00 34.26 3.67
247 248 2.818274 CCGGCCGGAAAGCTGTAC 60.818 66.667 41.82 0.00 37.44 2.90
261 262 4.869440 CGAGAGCAGCTGAGCCGG 62.869 72.222 20.43 0.00 34.23 6.13
300 301 4.962836 GATGGCATGGGGCGGAGG 62.963 72.222 3.81 0.00 46.16 4.30
301 302 4.962836 GGATGGCATGGGGCGGAG 62.963 72.222 3.81 0.00 46.16 4.63
304 305 2.826777 GATAGGGATGGCATGGGGCG 62.827 65.000 3.81 0.00 46.16 6.13
305 306 1.000396 GATAGGGATGGCATGGGGC 60.000 63.158 3.81 0.00 43.74 5.80
306 307 1.300963 CGATAGGGATGGCATGGGG 59.699 63.158 3.81 0.00 0.00 4.96
319 320 1.613925 TCCAGGCGAAATCTCCGATAG 59.386 52.381 0.00 0.00 0.00 2.08
320 321 1.699730 TCCAGGCGAAATCTCCGATA 58.300 50.000 0.00 0.00 0.00 2.92
321 322 1.051812 ATCCAGGCGAAATCTCCGAT 58.948 50.000 0.00 0.00 0.00 4.18
322 323 0.104855 CATCCAGGCGAAATCTCCGA 59.895 55.000 0.00 0.00 0.00 4.55
323 324 0.882042 CCATCCAGGCGAAATCTCCG 60.882 60.000 0.00 0.00 0.00 4.63
324 325 0.469917 TCCATCCAGGCGAAATCTCC 59.530 55.000 0.00 0.00 37.29 3.71
325 326 1.414181 TCTCCATCCAGGCGAAATCTC 59.586 52.381 0.00 0.00 37.29 2.75
326 327 1.415659 CTCTCCATCCAGGCGAAATCT 59.584 52.381 0.00 0.00 37.29 2.40
327 328 1.414181 TCTCTCCATCCAGGCGAAATC 59.586 52.381 0.00 0.00 37.29 2.17
328 329 1.500474 TCTCTCCATCCAGGCGAAAT 58.500 50.000 0.00 0.00 37.29 2.17
329 330 1.500474 ATCTCTCCATCCAGGCGAAA 58.500 50.000 0.00 0.00 37.29 3.46
330 331 1.139654 CAATCTCTCCATCCAGGCGAA 59.860 52.381 0.00 0.00 37.29 4.70
331 332 0.755079 CAATCTCTCCATCCAGGCGA 59.245 55.000 0.00 0.00 37.29 5.54
332 333 0.755079 TCAATCTCTCCATCCAGGCG 59.245 55.000 0.00 0.00 37.29 5.52
333 334 2.371179 TCATCAATCTCTCCATCCAGGC 59.629 50.000 0.00 0.00 37.29 4.85
334 335 3.008157 CCTCATCAATCTCTCCATCCAGG 59.992 52.174 0.00 0.00 39.47 4.45
335 336 3.902467 TCCTCATCAATCTCTCCATCCAG 59.098 47.826 0.00 0.00 0.00 3.86
336 337 3.902467 CTCCTCATCAATCTCTCCATCCA 59.098 47.826 0.00 0.00 0.00 3.41
337 338 4.158786 TCTCCTCATCAATCTCTCCATCC 58.841 47.826 0.00 0.00 0.00 3.51
338 339 5.337733 CCATCTCCTCATCAATCTCTCCATC 60.338 48.000 0.00 0.00 0.00 3.51
339 340 4.532916 CCATCTCCTCATCAATCTCTCCAT 59.467 45.833 0.00 0.00 0.00 3.41
340 341 3.902467 CCATCTCCTCATCAATCTCTCCA 59.098 47.826 0.00 0.00 0.00 3.86
341 342 3.903090 ACCATCTCCTCATCAATCTCTCC 59.097 47.826 0.00 0.00 0.00 3.71
342 343 4.262549 CCACCATCTCCTCATCAATCTCTC 60.263 50.000 0.00 0.00 0.00 3.20
343 344 3.647113 CCACCATCTCCTCATCAATCTCT 59.353 47.826 0.00 0.00 0.00 3.10
344 345 3.244491 CCCACCATCTCCTCATCAATCTC 60.244 52.174 0.00 0.00 0.00 2.75
345 346 2.709934 CCCACCATCTCCTCATCAATCT 59.290 50.000 0.00 0.00 0.00 2.40
346 347 2.224719 CCCCACCATCTCCTCATCAATC 60.225 54.545 0.00 0.00 0.00 2.67
347 348 1.779092 CCCCACCATCTCCTCATCAAT 59.221 52.381 0.00 0.00 0.00 2.57
348 349 1.216064 CCCCACCATCTCCTCATCAA 58.784 55.000 0.00 0.00 0.00 2.57
349 350 1.348008 GCCCCACCATCTCCTCATCA 61.348 60.000 0.00 0.00 0.00 3.07
350 351 1.348008 TGCCCCACCATCTCCTCATC 61.348 60.000 0.00 0.00 0.00 2.92
351 352 1.308128 TGCCCCACCATCTCCTCAT 60.308 57.895 0.00 0.00 0.00 2.90
352 353 1.997311 CTGCCCCACCATCTCCTCA 60.997 63.158 0.00 0.00 0.00 3.86
353 354 1.274703 TTCTGCCCCACCATCTCCTC 61.275 60.000 0.00 0.00 0.00 3.71
354 355 1.229951 TTCTGCCCCACCATCTCCT 60.230 57.895 0.00 0.00 0.00 3.69
355 356 1.225704 CTTCTGCCCCACCATCTCC 59.774 63.158 0.00 0.00 0.00 3.71
356 357 1.225704 CCTTCTGCCCCACCATCTC 59.774 63.158 0.00 0.00 0.00 2.75
357 358 2.988839 GCCTTCTGCCCCACCATCT 61.989 63.158 0.00 0.00 0.00 2.90
358 359 2.440980 GCCTTCTGCCCCACCATC 60.441 66.667 0.00 0.00 0.00 3.51
359 360 4.431131 CGCCTTCTGCCCCACCAT 62.431 66.667 0.00 0.00 36.24 3.55
361 362 4.785453 CTCGCCTTCTGCCCCACC 62.785 72.222 0.00 0.00 36.24 4.61
362 363 3.254024 TTCTCGCCTTCTGCCCCAC 62.254 63.158 0.00 0.00 36.24 4.61
363 364 2.927856 TTCTCGCCTTCTGCCCCA 60.928 61.111 0.00 0.00 36.24 4.96
364 365 2.124942 CTTCTCGCCTTCTGCCCC 60.125 66.667 0.00 0.00 36.24 5.80
365 366 0.321653 TTTCTTCTCGCCTTCTGCCC 60.322 55.000 0.00 0.00 36.24 5.36
366 367 0.799393 GTTTCTTCTCGCCTTCTGCC 59.201 55.000 0.00 0.00 36.24 4.85
367 368 1.195674 GTGTTTCTTCTCGCCTTCTGC 59.804 52.381 0.00 0.00 0.00 4.26
368 369 1.457303 CGTGTTTCTTCTCGCCTTCTG 59.543 52.381 0.00 0.00 0.00 3.02
369 370 1.340248 TCGTGTTTCTTCTCGCCTTCT 59.660 47.619 0.00 0.00 0.00 2.85
370 371 1.721926 CTCGTGTTTCTTCTCGCCTTC 59.278 52.381 0.00 0.00 0.00 3.46
371 372 1.340248 TCTCGTGTTTCTTCTCGCCTT 59.660 47.619 0.00 0.00 0.00 4.35
372 373 0.959553 TCTCGTGTTTCTTCTCGCCT 59.040 50.000 0.00 0.00 0.00 5.52
373 374 1.997669 ATCTCGTGTTTCTTCTCGCC 58.002 50.000 0.00 0.00 0.00 5.54
374 375 2.026978 CGAATCTCGTGTTTCTTCTCGC 59.973 50.000 6.70 0.00 34.72 5.03
375 376 2.594654 CCGAATCTCGTGTTTCTTCTCG 59.405 50.000 6.70 0.00 38.40 4.04
376 377 2.924290 CCCGAATCTCGTGTTTCTTCTC 59.076 50.000 6.70 0.00 38.40 2.87
377 378 2.353803 CCCCGAATCTCGTGTTTCTTCT 60.354 50.000 6.70 0.00 38.40 2.85
378 379 2.000447 CCCCGAATCTCGTGTTTCTTC 59.000 52.381 6.70 0.00 38.40 2.87
379 380 1.346722 ACCCCGAATCTCGTGTTTCTT 59.653 47.619 6.70 0.00 38.40 2.52
380 381 0.974383 ACCCCGAATCTCGTGTTTCT 59.026 50.000 6.70 0.00 38.40 2.52
381 382 1.076332 CACCCCGAATCTCGTGTTTC 58.924 55.000 0.00 0.00 38.40 2.78
382 383 0.321298 CCACCCCGAATCTCGTGTTT 60.321 55.000 0.00 0.00 38.40 2.83
383 384 1.295423 CCACCCCGAATCTCGTGTT 59.705 57.895 0.00 0.00 38.40 3.32
384 385 2.656069 CCCACCCCGAATCTCGTGT 61.656 63.158 0.00 0.00 38.40 4.49
385 386 2.186903 CCCACCCCGAATCTCGTG 59.813 66.667 0.00 0.00 38.40 4.35
386 387 3.782443 GCCCACCCCGAATCTCGT 61.782 66.667 0.00 0.00 38.40 4.18
387 388 4.891727 CGCCCACCCCGAATCTCG 62.892 72.222 0.00 0.00 40.07 4.04
388 389 4.547367 CCGCCCACCCCGAATCTC 62.547 72.222 0.00 0.00 0.00 2.75
389 390 3.988050 TACCGCCCACCCCGAATCT 62.988 63.158 0.00 0.00 0.00 2.40
390 391 2.726822 GATACCGCCCACCCCGAATC 62.727 65.000 0.00 0.00 0.00 2.52
391 392 2.770904 ATACCGCCCACCCCGAAT 60.771 61.111 0.00 0.00 0.00 3.34
392 393 3.472726 GATACCGCCCACCCCGAA 61.473 66.667 0.00 0.00 0.00 4.30
404 405 1.007618 GCTAGTCACGGCCGATACC 60.008 63.158 35.90 16.23 0.00 2.73
405 406 1.370172 CGCTAGTCACGGCCGATAC 60.370 63.158 35.90 27.33 0.00 2.24
406 407 0.887836 ATCGCTAGTCACGGCCGATA 60.888 55.000 35.90 16.86 0.00 2.92
407 408 2.194212 ATCGCTAGTCACGGCCGAT 61.194 57.895 35.90 16.86 0.00 4.18
408 409 2.827190 ATCGCTAGTCACGGCCGA 60.827 61.111 35.90 7.50 0.00 5.54
409 410 2.055310 TACATCGCTAGTCACGGCCG 62.055 60.000 26.86 26.86 0.00 6.13
410 411 0.101759 TTACATCGCTAGTCACGGCC 59.898 55.000 0.00 0.00 0.00 6.13
411 412 2.052157 GATTACATCGCTAGTCACGGC 58.948 52.381 0.00 0.00 0.00 5.68
412 413 2.307929 CGATTACATCGCTAGTCACGG 58.692 52.381 0.00 0.00 46.55 4.94
426 427 4.812626 ACCGTTTCCATGTAATCCGATTAC 59.187 41.667 20.18 20.18 44.13 1.89
427 428 5.026038 ACCGTTTCCATGTAATCCGATTA 57.974 39.130 0.00 0.00 0.00 1.75
428 429 3.881220 ACCGTTTCCATGTAATCCGATT 58.119 40.909 0.00 0.00 0.00 3.34
429 430 3.553828 ACCGTTTCCATGTAATCCGAT 57.446 42.857 0.00 0.00 0.00 4.18
430 431 3.337694 AACCGTTTCCATGTAATCCGA 57.662 42.857 0.00 0.00 0.00 4.55
431 432 4.492895 CGTAAACCGTTTCCATGTAATCCG 60.493 45.833 0.00 0.00 0.00 4.18
432 433 4.201841 CCGTAAACCGTTTCCATGTAATCC 60.202 45.833 0.00 0.00 33.66 3.01
433 434 4.728595 GCCGTAAACCGTTTCCATGTAATC 60.729 45.833 0.00 0.00 33.66 1.75
434 435 3.127376 GCCGTAAACCGTTTCCATGTAAT 59.873 43.478 0.00 0.00 33.66 1.89
435 436 2.483491 GCCGTAAACCGTTTCCATGTAA 59.517 45.455 0.00 0.00 33.66 2.41
436 437 2.075338 GCCGTAAACCGTTTCCATGTA 58.925 47.619 0.00 0.00 33.66 2.29
437 438 0.876399 GCCGTAAACCGTTTCCATGT 59.124 50.000 0.00 0.00 33.66 3.21
438 439 0.169451 GGCCGTAAACCGTTTCCATG 59.831 55.000 0.00 0.00 33.66 3.66
439 440 0.961857 GGGCCGTAAACCGTTTCCAT 60.962 55.000 0.00 0.00 33.66 3.41
440 441 1.600356 GGGCCGTAAACCGTTTCCA 60.600 57.895 0.00 0.00 33.66 3.53
441 442 1.600356 TGGGCCGTAAACCGTTTCC 60.600 57.895 0.00 0.00 33.66 3.13
442 443 1.575922 GTGGGCCGTAAACCGTTTC 59.424 57.895 0.00 0.00 33.66 2.78
443 444 2.253051 CGTGGGCCGTAAACCGTTT 61.253 57.895 0.00 1.40 33.66 3.60
444 445 2.665854 CGTGGGCCGTAAACCGTT 60.666 61.111 0.00 0.00 33.66 4.44
453 454 2.902846 TTTGGTTCACGTGGGCCG 60.903 61.111 17.00 0.00 44.03 6.13
454 455 2.122167 TGTTTGGTTCACGTGGGCC 61.122 57.895 17.00 17.75 0.00 5.80
455 456 1.065109 GTGTTTGGTTCACGTGGGC 59.935 57.895 17.00 8.69 0.00 5.36
456 457 1.099689 AAGTGTTTGGTTCACGTGGG 58.900 50.000 17.00 0.00 40.28 4.61
457 458 1.470890 ACAAGTGTTTGGTTCACGTGG 59.529 47.619 17.00 0.00 44.78 4.94
458 459 2.911819 ACAAGTGTTTGGTTCACGTG 57.088 45.000 9.94 9.94 45.51 4.49
459 460 3.181518 CGTTACAAGTGTTTGGTTCACGT 60.182 43.478 0.00 0.00 40.28 4.49
460 461 3.181518 ACGTTACAAGTGTTTGGTTCACG 60.182 43.478 0.00 0.00 40.28 4.35
461 462 4.345271 ACGTTACAAGTGTTTGGTTCAC 57.655 40.909 0.00 0.00 38.66 3.18
462 463 5.373981 AAACGTTACAAGTGTTTGGTTCA 57.626 34.783 0.00 0.00 38.66 3.18
463 464 5.857517 TGAAAACGTTACAAGTGTTTGGTTC 59.142 36.000 0.00 0.00 38.66 3.62
464 465 5.770417 TGAAAACGTTACAAGTGTTTGGTT 58.230 33.333 0.00 0.00 38.66 3.67
465 466 5.373981 TGAAAACGTTACAAGTGTTTGGT 57.626 34.783 0.00 0.00 38.66 3.67
466 467 6.312645 CTTGAAAACGTTACAAGTGTTTGG 57.687 37.500 26.06 10.90 38.66 3.28
473 474 5.673717 CACCGTAACTTGAAAACGTTACAAG 59.326 40.000 29.46 29.46 43.36 3.16
474 475 5.121454 ACACCGTAACTTGAAAACGTTACAA 59.879 36.000 16.15 16.15 43.36 2.41
475 476 4.629200 ACACCGTAACTTGAAAACGTTACA 59.371 37.500 0.00 2.29 43.36 2.41
476 477 5.142635 ACACCGTAACTTGAAAACGTTAC 57.857 39.130 0.00 0.00 41.08 2.50
477 478 6.893958 TTACACCGTAACTTGAAAACGTTA 57.106 33.333 0.00 0.00 34.90 3.18
478 479 5.793026 TTACACCGTAACTTGAAAACGTT 57.207 34.783 0.00 0.00 34.90 3.99
479 480 5.523188 TGATTACACCGTAACTTGAAAACGT 59.477 36.000 0.00 0.00 34.90 3.99
480 481 5.976586 TGATTACACCGTAACTTGAAAACG 58.023 37.500 0.00 0.00 36.42 3.60
481 482 6.017687 ACCTGATTACACCGTAACTTGAAAAC 60.018 38.462 0.00 0.00 0.00 2.43
482 483 6.056884 ACCTGATTACACCGTAACTTGAAAA 58.943 36.000 0.00 0.00 0.00 2.29
483 484 5.613329 ACCTGATTACACCGTAACTTGAAA 58.387 37.500 0.00 0.00 0.00 2.69
484 485 5.217978 ACCTGATTACACCGTAACTTGAA 57.782 39.130 0.00 0.00 0.00 2.69
485 486 4.877378 ACCTGATTACACCGTAACTTGA 57.123 40.909 0.00 0.00 0.00 3.02
486 487 5.061311 CGTAACCTGATTACACCGTAACTTG 59.939 44.000 0.00 0.00 43.04 3.16
487 488 5.163513 CGTAACCTGATTACACCGTAACTT 58.836 41.667 0.00 0.00 43.04 2.66
488 489 4.380867 CCGTAACCTGATTACACCGTAACT 60.381 45.833 0.00 0.00 43.04 2.24
489 490 3.859386 CCGTAACCTGATTACACCGTAAC 59.141 47.826 0.00 0.00 43.04 2.50
490 491 3.119173 CCCGTAACCTGATTACACCGTAA 60.119 47.826 0.00 0.00 43.04 3.18
491 492 2.426738 CCCGTAACCTGATTACACCGTA 59.573 50.000 0.00 0.00 43.04 4.02
492 493 1.205417 CCCGTAACCTGATTACACCGT 59.795 52.381 0.00 0.00 43.04 4.83
493 494 1.930567 CCCGTAACCTGATTACACCG 58.069 55.000 0.00 0.00 43.04 4.94
494 495 1.660167 GCCCGTAACCTGATTACACC 58.340 55.000 0.00 0.00 43.04 4.16
495 496 1.065998 TGGCCCGTAACCTGATTACAC 60.066 52.381 0.00 0.00 43.04 2.90
496 497 1.277579 TGGCCCGTAACCTGATTACA 58.722 50.000 0.00 0.00 43.04 2.41
497 498 2.406596 TTGGCCCGTAACCTGATTAC 57.593 50.000 0.00 0.00 39.98 1.89
498 499 3.436577 TTTTGGCCCGTAACCTGATTA 57.563 42.857 0.00 0.00 0.00 1.75
499 500 2.296073 TTTTGGCCCGTAACCTGATT 57.704 45.000 0.00 0.00 0.00 2.57
500 501 2.495669 CAATTTTGGCCCGTAACCTGAT 59.504 45.455 0.00 0.00 0.00 2.90
501 502 1.889829 CAATTTTGGCCCGTAACCTGA 59.110 47.619 0.00 0.00 0.00 3.86
502 503 1.889829 TCAATTTTGGCCCGTAACCTG 59.110 47.619 0.00 0.00 0.00 4.00
503 504 2.296073 TCAATTTTGGCCCGTAACCT 57.704 45.000 0.00 0.00 0.00 3.50
504 505 2.494073 TCATCAATTTTGGCCCGTAACC 59.506 45.455 0.00 0.00 0.00 2.85
505 506 3.859411 TCATCAATTTTGGCCCGTAAC 57.141 42.857 0.00 0.00 0.00 2.50
506 507 3.056465 GGTTCATCAATTTTGGCCCGTAA 60.056 43.478 0.00 0.00 0.00 3.18
507 508 2.494073 GGTTCATCAATTTTGGCCCGTA 59.506 45.455 0.00 0.00 0.00 4.02
508 509 1.275010 GGTTCATCAATTTTGGCCCGT 59.725 47.619 0.00 0.00 0.00 5.28
509 510 1.274728 TGGTTCATCAATTTTGGCCCG 59.725 47.619 0.00 0.00 0.00 6.13
510 511 3.415457 TTGGTTCATCAATTTTGGCCC 57.585 42.857 0.00 0.00 0.00 5.80
511 512 4.024133 GTGTTTGGTTCATCAATTTTGGCC 60.024 41.667 0.00 0.00 0.00 5.36
512 513 4.024133 GGTGTTTGGTTCATCAATTTTGGC 60.024 41.667 0.00 0.00 0.00 4.52
513 514 5.367302 AGGTGTTTGGTTCATCAATTTTGG 58.633 37.500 0.00 0.00 0.00 3.28
514 515 6.538021 TGAAGGTGTTTGGTTCATCAATTTTG 59.462 34.615 0.00 0.00 0.00 2.44
515 516 6.648192 TGAAGGTGTTTGGTTCATCAATTTT 58.352 32.000 0.00 0.00 0.00 1.82
516 517 6.232581 TGAAGGTGTTTGGTTCATCAATTT 57.767 33.333 0.00 0.00 0.00 1.82
517 518 5.867903 TGAAGGTGTTTGGTTCATCAATT 57.132 34.783 0.00 0.00 0.00 2.32
518 519 5.279607 CCATGAAGGTGTTTGGTTCATCAAT 60.280 40.000 0.00 0.00 38.56 2.57
519 520 4.039004 CCATGAAGGTGTTTGGTTCATCAA 59.961 41.667 0.00 0.00 38.56 2.57
520 521 3.573538 CCATGAAGGTGTTTGGTTCATCA 59.426 43.478 0.00 0.00 38.56 3.07
521 522 3.826157 TCCATGAAGGTGTTTGGTTCATC 59.174 43.478 0.00 0.00 38.56 2.92
522 523 3.573967 GTCCATGAAGGTGTTTGGTTCAT 59.426 43.478 0.00 0.00 40.73 2.57
523 524 2.955660 GTCCATGAAGGTGTTTGGTTCA 59.044 45.455 0.00 0.00 39.02 3.18
524 525 2.955660 TGTCCATGAAGGTGTTTGGTTC 59.044 45.455 0.00 0.00 39.02 3.62
525 526 2.693074 GTGTCCATGAAGGTGTTTGGTT 59.307 45.455 0.00 0.00 39.02 3.67
526 527 2.306847 GTGTCCATGAAGGTGTTTGGT 58.693 47.619 0.00 0.00 39.02 3.67
527 528 1.613437 GGTGTCCATGAAGGTGTTTGG 59.387 52.381 0.00 0.00 39.02 3.28
528 529 2.586425 AGGTGTCCATGAAGGTGTTTG 58.414 47.619 0.00 0.00 39.02 2.93
529 530 3.650942 TCTAGGTGTCCATGAAGGTGTTT 59.349 43.478 0.00 0.00 39.02 2.83
530 531 3.248024 TCTAGGTGTCCATGAAGGTGTT 58.752 45.455 0.00 0.00 39.02 3.32
531 532 2.834549 CTCTAGGTGTCCATGAAGGTGT 59.165 50.000 0.00 0.00 39.02 4.16
532 533 3.099905 TCTCTAGGTGTCCATGAAGGTG 58.900 50.000 0.00 0.00 39.02 4.00
533 534 3.474798 TCTCTAGGTGTCCATGAAGGT 57.525 47.619 0.00 0.00 39.02 3.50
534 535 3.070734 CCATCTCTAGGTGTCCATGAAGG 59.929 52.174 0.00 0.00 39.47 3.46
535 536 3.963374 TCCATCTCTAGGTGTCCATGAAG 59.037 47.826 0.00 0.00 0.00 3.02
536 537 3.706594 GTCCATCTCTAGGTGTCCATGAA 59.293 47.826 0.00 0.00 0.00 2.57
537 538 3.300388 GTCCATCTCTAGGTGTCCATGA 58.700 50.000 0.00 0.00 0.00 3.07
538 539 3.033909 TGTCCATCTCTAGGTGTCCATG 58.966 50.000 0.00 0.00 0.00 3.66
539 540 3.034635 GTGTCCATCTCTAGGTGTCCAT 58.965 50.000 0.00 0.00 0.00 3.41
540 541 2.225267 TGTGTCCATCTCTAGGTGTCCA 60.225 50.000 0.00 0.00 0.00 4.02
541 542 2.457598 TGTGTCCATCTCTAGGTGTCC 58.542 52.381 0.00 0.00 0.00 4.02
542 543 4.279671 CCTATGTGTCCATCTCTAGGTGTC 59.720 50.000 0.00 0.00 32.29 3.67
543 544 4.219115 CCTATGTGTCCATCTCTAGGTGT 58.781 47.826 0.00 0.00 32.29 4.16
544 545 3.576118 CCCTATGTGTCCATCTCTAGGTG 59.424 52.174 0.00 0.00 32.29 4.00
545 546 3.850752 CCCTATGTGTCCATCTCTAGGT 58.149 50.000 0.00 0.00 32.29 3.08
546 547 2.564947 GCCCTATGTGTCCATCTCTAGG 59.435 54.545 0.00 0.00 32.29 3.02
547 548 2.230025 CGCCCTATGTGTCCATCTCTAG 59.770 54.545 0.00 0.00 32.29 2.43
548 549 2.239400 CGCCCTATGTGTCCATCTCTA 58.761 52.381 0.00 0.00 32.29 2.43
549 550 1.043816 CGCCCTATGTGTCCATCTCT 58.956 55.000 0.00 0.00 32.29 3.10
550 551 0.753262 ACGCCCTATGTGTCCATCTC 59.247 55.000 0.00 0.00 29.74 2.75
551 552 0.465705 CACGCCCTATGTGTCCATCT 59.534 55.000 0.00 0.00 34.84 2.90
552 553 2.992089 CACGCCCTATGTGTCCATC 58.008 57.895 0.00 0.00 34.84 3.51
561 562 1.248101 GGCAACCAAACACGCCCTAT 61.248 55.000 0.00 0.00 38.67 2.57
904 916 4.814147 CCTAGAGCGCATATCTGAAATCA 58.186 43.478 11.47 0.00 0.00 2.57
979 1018 1.254026 CCACAGAGTAGGTCGACCAA 58.746 55.000 35.00 0.00 38.89 3.67
998 1037 4.937431 GCGTAGGGGGAGCCATGC 62.937 72.222 0.00 0.00 0.00 4.06
1093 1136 3.002656 CGTTCAATGGGAAATCGATCCTG 59.997 47.826 0.00 0.00 39.57 3.86
1203 1246 2.089980 GCTCTCTGGTGCATGAACATT 58.910 47.619 6.08 0.00 32.83 2.71
1233 1276 2.948720 GCTCAACGGTCTCCCAGCT 61.949 63.158 0.00 0.00 0.00 4.24
1250 1294 2.548480 GGAAACAATAGACCATAGCGGC 59.452 50.000 0.00 0.00 39.03 6.53
1262 1306 1.004979 CCTGTTCCCGGGGAAACAATA 59.995 52.381 29.51 12.70 43.86 1.90
1404 1476 3.012518 ACTGGTGTTGATGCTATCTTGC 58.987 45.455 0.00 0.00 0.00 4.01
1464 1536 3.843619 TGACCATGAACCTCTGGTTATGA 59.156 43.478 1.61 0.00 46.95 2.15
1517 1589 4.646945 CCTGCTTGAAGTACCTAGAGATGA 59.353 45.833 0.00 0.00 0.00 2.92
1673 1745 4.398673 TGCACAATACAAGCATATCAAGCA 59.601 37.500 0.00 0.00 32.55 3.91
2034 2106 3.157881 ACCAGAGAACTCGTTGAGATGA 58.842 45.455 0.00 0.00 33.32 2.92
2105 2178 4.773149 CCCTCTCAACAGTTACTCTAAGGT 59.227 45.833 0.00 0.00 0.00 3.50
2182 2255 5.578157 AACTTAACTTGAGTGGGGTATGT 57.422 39.130 0.00 0.00 0.00 2.29
2266 2339 0.992695 TCGACCTCTTCCTCCTCAGA 59.007 55.000 0.00 0.00 0.00 3.27
2607 2756 8.942338 TTACCACACATAATCTGAACATAGTC 57.058 34.615 0.00 0.00 0.00 2.59
2639 2792 6.456501 GTGTTGTCACCACTTCTATCTAGTT 58.543 40.000 0.00 0.00 38.51 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.