Multiple sequence alignment - TraesCS6D01G324100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G324100 chr6D 100.000 4674 0 0 1 4674 430534536 430529863 0.000000e+00 8632
1 TraesCS6D01G324100 chr6D 81.250 944 108 24 2710 3617 430415975 430415065 0.000000e+00 699
2 TraesCS6D01G324100 chr6B 88.501 3096 234 52 1 3025 648861236 648858192 0.000000e+00 3633
3 TraesCS6D01G324100 chr6B 88.501 3096 234 52 1 3025 648897040 648893996 0.000000e+00 3633
4 TraesCS6D01G324100 chr6B 84.758 538 43 23 3086 3617 648858176 648857672 1.940000e-138 503
5 TraesCS6D01G324100 chr6B 84.758 538 43 23 3086 3617 648893980 648893476 1.940000e-138 503
6 TraesCS6D01G324100 chr6B 92.000 100 8 0 1417 1516 648882409 648882310 1.750000e-29 141
7 TraesCS6D01G324100 chr6B 79.429 175 27 7 4107 4273 648774054 648773881 1.060000e-21 115
8 TraesCS6D01G324100 chr6B 79.429 175 27 7 4107 4273 648791825 648791652 1.060000e-21 115
9 TraesCS6D01G324100 chr6A 83.106 2498 253 81 2107 4510 577076295 577073873 0.000000e+00 2119
10 TraesCS6D01G324100 chr6A 92.425 1439 87 13 1 1427 577078486 577077058 0.000000e+00 2034
11 TraesCS6D01G324100 chr6A 90.219 777 60 5 1457 2219 577077060 577076286 0.000000e+00 1000
12 TraesCS6D01G324100 chr3D 82.515 1161 157 35 200 1339 23163728 23164863 0.000000e+00 977
13 TraesCS6D01G324100 chr3D 79.668 782 123 24 571 1339 537593894 537594652 8.910000e-147 531
14 TraesCS6D01G324100 chr3D 83.974 312 44 6 400 708 23163389 23163697 1.270000e-75 294
15 TraesCS6D01G324100 chr4A 82.480 1153 165 22 199 1339 548346413 548345286 0.000000e+00 976
16 TraesCS6D01G324100 chr4A 81.693 579 72 20 172 743 708370431 708369880 7.130000e-123 451
17 TraesCS6D01G324100 chr4A 83.784 444 58 11 272 709 548346876 548346441 4.350000e-110 409
18 TraesCS6D01G324100 chr1B 81.654 1161 184 26 199 1347 635160152 635161295 0.000000e+00 937
19 TraesCS6D01G324100 chr1B 82.486 925 144 16 424 1339 635881001 635881916 0.000000e+00 795
20 TraesCS6D01G324100 chr7D 82.245 1087 145 30 259 1331 75773396 75774448 0.000000e+00 894
21 TraesCS6D01G324100 chr7D 80.711 788 134 16 572 1350 442208405 442207627 8.660000e-167 597
22 TraesCS6D01G324100 chr4D 80.689 958 156 20 160 1098 83849031 83849978 0.000000e+00 717
23 TraesCS6D01G324100 chr4B 85.009 567 78 5 204 770 72178111 72177552 1.890000e-158 569
24 TraesCS6D01G324100 chr3B 80.533 750 134 10 576 1320 729725845 729726587 2.440000e-157 566


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G324100 chr6D 430529863 430534536 4673 True 8632.000000 8632 100.000000 1 4674 1 chr6D.!!$R2 4673
1 TraesCS6D01G324100 chr6D 430415065 430415975 910 True 699.000000 699 81.250000 2710 3617 1 chr6D.!!$R1 907
2 TraesCS6D01G324100 chr6B 648857672 648861236 3564 True 2068.000000 3633 86.629500 1 3617 2 chr6B.!!$R4 3616
3 TraesCS6D01G324100 chr6B 648893476 648897040 3564 True 2068.000000 3633 86.629500 1 3617 2 chr6B.!!$R5 3616
4 TraesCS6D01G324100 chr6A 577073873 577078486 4613 True 1717.666667 2119 88.583333 1 4510 3 chr6A.!!$R1 4509
5 TraesCS6D01G324100 chr3D 23163389 23164863 1474 False 635.500000 977 83.244500 200 1339 2 chr3D.!!$F2 1139
6 TraesCS6D01G324100 chr3D 537593894 537594652 758 False 531.000000 531 79.668000 571 1339 1 chr3D.!!$F1 768
7 TraesCS6D01G324100 chr4A 548345286 548346876 1590 True 692.500000 976 83.132000 199 1339 2 chr4A.!!$R2 1140
8 TraesCS6D01G324100 chr4A 708369880 708370431 551 True 451.000000 451 81.693000 172 743 1 chr4A.!!$R1 571
9 TraesCS6D01G324100 chr1B 635160152 635161295 1143 False 937.000000 937 81.654000 199 1347 1 chr1B.!!$F1 1148
10 TraesCS6D01G324100 chr1B 635881001 635881916 915 False 795.000000 795 82.486000 424 1339 1 chr1B.!!$F2 915
11 TraesCS6D01G324100 chr7D 75773396 75774448 1052 False 894.000000 894 82.245000 259 1331 1 chr7D.!!$F1 1072
12 TraesCS6D01G324100 chr7D 442207627 442208405 778 True 597.000000 597 80.711000 572 1350 1 chr7D.!!$R1 778
13 TraesCS6D01G324100 chr4D 83849031 83849978 947 False 717.000000 717 80.689000 160 1098 1 chr4D.!!$F1 938
14 TraesCS6D01G324100 chr4B 72177552 72178111 559 True 569.000000 569 85.009000 204 770 1 chr4B.!!$R1 566
15 TraesCS6D01G324100 chr3B 729725845 729726587 742 False 566.000000 566 80.533000 576 1320 1 chr3B.!!$F1 744

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 87 1.507630 CATCACACATGTTGGGCGG 59.492 57.895 0.0 0.0 0.00 6.13 F
1713 2732 0.179189 GCGAGGAACGGAATTTGCTG 60.179 55.000 0.0 0.0 42.83 4.41 F
2900 4051 0.179000 GATTCTGCACCTCCATCGGT 59.821 55.000 0.0 0.0 37.93 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2082 3103 0.669318 TCACGTTTGCCTCGATCACC 60.669 55.0 0.00 0.0 0.00 4.02 R
3552 4736 0.109597 CGGAGATTGGTTGTTGCTGC 60.110 55.0 0.00 0.0 0.00 5.25 R
3958 5191 0.239082 TTAGACATGTCGCGACACGT 59.761 50.0 41.29 39.3 45.05 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 87 1.507630 CATCACACATGTTGGGCGG 59.492 57.895 0.00 0.00 0.00 6.13
153 155 3.270027 CCCACATTTTCTGAGATGCGTA 58.730 45.455 3.82 0.00 0.00 4.42
552 831 9.001542 CAAATATGTGAAAACAACCCATTTCAT 57.998 29.630 4.48 0.00 44.62 2.57
710 1322 7.913674 TTTTGTAAAACAAGCCAGTGAAAAT 57.086 28.000 0.00 0.00 39.53 1.82
713 1325 5.814705 TGTAAAACAAGCCAGTGAAAATTGG 59.185 36.000 0.00 0.00 37.53 3.16
726 1338 7.393234 CCAGTGAAAATTGGAATGTACCTTCTA 59.607 37.037 10.23 2.17 36.55 2.10
737 1349 7.444183 TGGAATGTACCTTCTAAAAGTGACAAG 59.556 37.037 10.23 0.00 32.24 3.16
777 1389 8.200364 AGGTCAACTTGTGAAATTGAAAATTG 57.800 30.769 0.00 0.00 38.23 2.32
787 1399 7.909121 TGTGAAATTGAAAATTGTGAAATGTGC 59.091 29.630 0.00 0.00 0.00 4.57
885 1847 3.010584 AGCCAGTGGGAAGTGAAATGTAT 59.989 43.478 12.15 0.00 35.59 2.29
1073 2039 8.855279 TGTAAGTTTTGAAAGTGAAAAATGACG 58.145 29.630 0.00 0.00 28.42 4.35
1077 2043 7.273381 AGTTTTGAAAGTGAAAAATGACGTGAG 59.727 33.333 0.00 0.00 0.00 3.51
1119 2092 7.719193 TGTGACACTCTGGAAGAATTTTATTCA 59.281 33.333 7.20 0.00 46.34 2.57
1120 2093 8.734386 GTGACACTCTGGAAGAATTTTATTCAT 58.266 33.333 0.00 0.00 46.34 2.57
1152 2134 6.078202 TCAAGCGGACAAAATATGTGAAAA 57.922 33.333 0.00 0.00 44.12 2.29
1352 2344 3.753797 GGAAAGAGATGGTGAAGTGGTTC 59.246 47.826 0.00 0.00 0.00 3.62
1353 2345 4.505742 GGAAAGAGATGGTGAAGTGGTTCT 60.506 45.833 0.00 0.00 33.38 3.01
1354 2346 5.280011 GGAAAGAGATGGTGAAGTGGTTCTA 60.280 44.000 0.00 0.00 33.38 2.10
1357 2349 7.496346 AAGAGATGGTGAAGTGGTTCTAATA 57.504 36.000 0.00 0.00 33.38 0.98
1358 2350 7.118496 AGAGATGGTGAAGTGGTTCTAATAG 57.882 40.000 0.00 0.00 33.38 1.73
1360 2352 7.181125 AGAGATGGTGAAGTGGTTCTAATAGTT 59.819 37.037 0.00 0.00 33.38 2.24
1361 2353 7.106239 AGATGGTGAAGTGGTTCTAATAGTTG 58.894 38.462 0.00 0.00 33.38 3.16
1367 2359 7.386848 GTGAAGTGGTTCTAATAGTTGTGCTAA 59.613 37.037 0.00 0.00 33.38 3.09
1371 2363 9.953565 AGTGGTTCTAATAGTTGTGCTAATTAA 57.046 29.630 0.00 0.00 32.72 1.40
1448 2448 9.986157 ACCATATATCTCTGCCATGAAAAATAT 57.014 29.630 0.00 0.00 0.00 1.28
1455 2459 8.455903 TCTCTGCCATGAAAAATATTTCCTAG 57.544 34.615 0.10 0.00 43.54 3.02
1503 2507 2.623416 CTCCATATCGCCGGCATCTATA 59.377 50.000 28.98 17.55 0.00 1.31
1532 2536 1.565156 CGTACGTGCAGTGCAACCAT 61.565 55.000 21.67 8.11 41.47 3.55
1551 2555 6.602410 ACCATATATCTGTCATCCACTGAG 57.398 41.667 0.00 0.00 36.49 3.35
1566 2570 0.538584 CTGAGTGACAGCATGCCCTA 59.461 55.000 15.66 0.00 42.53 3.53
1713 2732 0.179189 GCGAGGAACGGAATTTGCTG 60.179 55.000 0.00 0.00 42.83 4.41
1829 2850 4.760047 TGCGGCGCCTTCTTCCTC 62.760 66.667 30.82 3.54 0.00 3.71
1862 2883 3.249189 TCTGCCCGGCAAGGAAGT 61.249 61.111 14.45 0.00 45.00 3.01
1898 2919 2.508439 CACCGAACCACGATCCGG 60.508 66.667 0.00 0.00 45.77 5.14
1899 2920 4.446413 ACCGAACCACGATCCGGC 62.446 66.667 0.00 0.00 45.29 6.13
1937 2958 1.827399 GACGGCAAGAGGAGGGTGAA 61.827 60.000 0.00 0.00 0.00 3.18
1968 2989 3.793144 GAGCACAAAGAGGCGCCG 61.793 66.667 23.20 9.03 34.54 6.46
1978 2999 4.162690 AGGCGCCGAAGATGACCC 62.163 66.667 23.20 0.00 0.00 4.46
1983 3004 4.547367 CCGAAGATGACCCCGGCC 62.547 72.222 0.00 0.00 35.29 6.13
1986 3007 3.735037 GAAGATGACCCCGGCCGAC 62.735 68.421 30.73 15.29 0.00 4.79
2034 3055 1.079819 GCTAGCGGCAGAACTGTCA 60.080 57.895 0.00 0.00 41.35 3.58
2039 3060 1.367471 CGGCAGAACTGTCAGACCA 59.633 57.895 6.91 0.00 34.22 4.02
2093 3114 4.570663 CCGACGGGTGATCGAGGC 62.571 72.222 5.81 0.00 42.25 4.70
2101 3122 0.669318 GGTGATCGAGGCAAACGTGA 60.669 55.000 0.00 0.00 0.00 4.35
2102 3123 1.144969 GTGATCGAGGCAAACGTGAA 58.855 50.000 0.00 0.00 0.00 3.18
2124 3145 2.762459 ATGGAAGACGCGGCCCTA 60.762 61.111 9.25 0.00 0.00 3.53
2155 3176 0.950555 GATGCACGTGGACAAGCTCA 60.951 55.000 18.88 4.07 0.00 4.26
2175 3196 0.248289 TCAAAACGAGGGATCCGTCC 59.752 55.000 25.04 10.46 44.29 4.79
2202 3223 1.741706 CCGCAAGATGACAGCAAGATT 59.258 47.619 0.00 0.00 43.02 2.40
2207 3228 4.482386 CAAGATGACAGCAAGATTGTTGG 58.518 43.478 13.01 0.00 42.72 3.77
2209 3230 1.619654 TGACAGCAAGATTGTTGGGG 58.380 50.000 13.01 0.00 42.72 4.96
2211 3232 2.238521 GACAGCAAGATTGTTGGGGAA 58.761 47.619 13.01 0.00 42.72 3.97
2216 3237 2.353109 GCAAGATTGTTGGGGAAGAAGC 60.353 50.000 0.00 0.00 0.00 3.86
2253 3373 2.561956 CGTCGATATCTGCCCCGGT 61.562 63.158 0.00 0.00 0.00 5.28
2389 3509 3.031964 CTGGCGCTCGCTGAAAAGG 62.032 63.158 7.64 0.00 41.60 3.11
2404 3524 1.842381 AAAGGGGGAGAAGGAGTGCG 61.842 60.000 0.00 0.00 0.00 5.34
2421 3541 2.092882 CGTCGCCGAAAAGGAGGAC 61.093 63.158 0.00 0.00 45.00 3.85
2535 3655 2.548875 AGCAGCGATTCTGATTCTGAC 58.451 47.619 0.00 0.00 45.72 3.51
2538 3658 3.737663 GCAGCGATTCTGATTCTGACTCT 60.738 47.826 8.54 0.00 45.72 3.24
2553 3673 1.142748 CTCTGACCCAGACATCGGC 59.857 63.158 0.00 0.00 35.39 5.54
2653 3779 3.583086 AGTTCTTCCTAAGGTTAGCAGCA 59.417 43.478 0.00 0.00 0.00 4.41
2654 3780 3.895232 TCTTCCTAAGGTTAGCAGCAG 57.105 47.619 0.00 0.00 0.00 4.24
2655 3781 2.093447 TCTTCCTAAGGTTAGCAGCAGC 60.093 50.000 0.00 0.00 42.56 5.25
2656 3782 0.541863 TCCTAAGGTTAGCAGCAGCC 59.458 55.000 0.00 0.00 43.56 4.85
2657 3783 0.543749 CCTAAGGTTAGCAGCAGCCT 59.456 55.000 0.00 0.00 43.56 4.58
2665 3791 0.762082 TAGCAGCAGCCTAGCTCCAT 60.762 55.000 7.79 0.00 44.54 3.41
2704 3830 1.971167 GGCGATTCTGCACCACCAA 60.971 57.895 0.00 0.00 36.28 3.67
2801 3927 2.040813 AGGTGAATGGTGATTCTGCTGT 59.959 45.455 0.00 0.00 39.10 4.40
2803 3929 2.094894 GTGAATGGTGATTCTGCTGTCG 59.905 50.000 0.00 0.00 39.10 4.35
2830 3968 2.233676 TCGGAGCTACAGAATGCAGAAA 59.766 45.455 0.00 0.00 42.53 2.52
2840 3978 3.742882 CAGAATGCAGAAACAGAGAACGA 59.257 43.478 0.00 0.00 0.00 3.85
2867 4005 6.663953 AGTAGTGTAGCTCCATCAGTTCTTTA 59.336 38.462 0.00 0.00 0.00 1.85
2889 4037 1.255882 AAATGGTTGGCGATTCTGCA 58.744 45.000 0.00 0.00 36.28 4.41
2890 4038 0.527565 AATGGTTGGCGATTCTGCAC 59.472 50.000 0.00 0.00 36.28 4.57
2892 4040 1.675641 GGTTGGCGATTCTGCACCT 60.676 57.895 0.00 0.00 36.28 4.00
2900 4051 0.179000 GATTCTGCACCTCCATCGGT 59.821 55.000 0.00 0.00 37.93 4.69
2908 4059 2.046023 CTCCATCGGTGCCAGCAA 60.046 61.111 0.00 0.00 0.00 3.91
2910 4061 0.179048 CTCCATCGGTGCCAGCAATA 60.179 55.000 0.00 0.00 0.00 1.90
2960 4126 4.069232 TCCAGCTCCGGCAGTTCG 62.069 66.667 0.00 0.00 41.70 3.95
2971 4137 2.617274 GCAGTTCGTCCCAAGGTGC 61.617 63.158 0.00 0.00 0.00 5.01
2995 4161 2.192979 GATCCGATGGCCAGGCAA 59.807 61.111 15.19 0.58 0.00 4.52
3075 4244 2.361757 CAAAGTGGTTGATGGTTCTGCA 59.638 45.455 0.00 0.00 39.87 4.41
3077 4246 1.143684 AGTGGTTGATGGTTCTGCACT 59.856 47.619 0.00 0.00 0.00 4.40
3084 4253 2.158769 TGATGGTTCTGCACTGTCACTT 60.159 45.455 0.00 0.00 0.00 3.16
3124 4305 2.645838 TGAAACAGAGAAGCTTGGCT 57.354 45.000 2.10 0.00 42.56 4.75
3126 4307 0.957362 AAACAGAGAAGCTTGGCTGC 59.043 50.000 19.71 0.00 39.62 5.25
3130 4311 2.035312 AGAAGCTTGGCTGCCCAG 59.965 61.111 17.53 16.19 43.37 4.45
3140 4321 2.353958 CTGCCCAGCACCATCAGT 59.646 61.111 0.00 0.00 33.79 3.41
3141 4322 1.303888 CTGCCCAGCACCATCAGTT 60.304 57.895 0.00 0.00 33.79 3.16
3142 4323 1.303561 TGCCCAGCACCATCAGTTC 60.304 57.895 0.00 0.00 31.71 3.01
3143 4324 2.401766 GCCCAGCACCATCAGTTCG 61.402 63.158 0.00 0.00 0.00 3.95
3145 4326 1.021390 CCCAGCACCATCAGTTCGAC 61.021 60.000 0.00 0.00 0.00 4.20
3179 4363 2.309755 TGAATGATGGTTCTTCCCTGCT 59.690 45.455 0.00 0.00 34.77 4.24
3232 4416 5.048224 CAGAATGCAGAACCAGAAAATGTCT 60.048 40.000 0.00 0.00 36.88 3.41
3234 4418 3.819368 TGCAGAACCAGAAAATGTCTCA 58.181 40.909 0.00 0.00 32.70 3.27
3240 4424 5.762218 AGAACCAGAAAATGTCTCAGACAAG 59.238 40.000 12.63 0.00 45.96 3.16
3241 4425 3.817647 ACCAGAAAATGTCTCAGACAAGC 59.182 43.478 12.63 1.59 45.96 4.01
3242 4426 3.190118 CCAGAAAATGTCTCAGACAAGCC 59.810 47.826 12.63 1.78 45.96 4.35
3243 4427 4.070716 CAGAAAATGTCTCAGACAAGCCT 58.929 43.478 12.63 4.17 45.96 4.58
3244 4428 4.070716 AGAAAATGTCTCAGACAAGCCTG 58.929 43.478 12.63 0.00 45.96 4.85
3245 4429 1.818642 AATGTCTCAGACAAGCCTGC 58.181 50.000 12.63 0.00 45.96 4.85
3246 4430 0.689055 ATGTCTCAGACAAGCCTGCA 59.311 50.000 12.63 0.00 45.96 4.41
3247 4431 0.469494 TGTCTCAGACAAGCCTGCAA 59.531 50.000 4.55 0.00 39.78 4.08
3248 4432 0.871057 GTCTCAGACAAGCCTGCAAC 59.129 55.000 0.00 0.00 34.28 4.17
3253 4437 2.203195 ACAAGCCTGCAACTGCGA 60.203 55.556 0.00 0.00 45.83 5.10
3363 4547 4.394712 CGTCAGGGGCTGGTGGAC 62.395 72.222 0.00 0.00 31.51 4.02
3435 4619 1.154413 GCTTGGCATCGTTCACGTG 60.154 57.895 9.94 9.94 40.80 4.49
3498 4682 1.152902 TCTGTTGCAGCAGCTTGGT 60.153 52.632 24.28 0.00 42.74 3.67
3561 4745 2.725641 CAGCAGCAGCAGCAACAA 59.274 55.556 12.92 0.00 45.49 2.83
3562 4746 1.660575 CAGCAGCAGCAGCAACAAC 60.661 57.895 12.92 0.00 45.49 3.32
3574 4758 2.489329 CAGCAACAACCAATCTCCGATT 59.511 45.455 0.00 0.00 0.00 3.34
3618 4805 2.050918 GGGGAGATTCTGTTCTAGGGG 58.949 57.143 0.00 0.00 0.00 4.79
3630 4817 0.770557 TCTAGGGGTGTGGGCTTGTT 60.771 55.000 0.00 0.00 0.00 2.83
3662 4856 3.544684 AGACATGCCGCATGAAGATTTA 58.455 40.909 34.59 0.00 43.81 1.40
3663 4857 3.562973 AGACATGCCGCATGAAGATTTAG 59.437 43.478 34.59 9.79 43.81 1.85
3670 4864 4.618227 GCCGCATGAAGATTTAGTTTTGGT 60.618 41.667 0.00 0.00 0.00 3.67
3671 4865 5.392595 GCCGCATGAAGATTTAGTTTTGGTA 60.393 40.000 0.00 0.00 0.00 3.25
3672 4866 6.680378 GCCGCATGAAGATTTAGTTTTGGTAT 60.680 38.462 0.00 0.00 0.00 2.73
3699 4893 6.709018 ATACTATCGAAAACAAATTGGGGG 57.291 37.500 0.00 0.00 0.00 5.40
3707 4901 4.779993 AAACAAATTGGGGGCTGTTTTA 57.220 36.364 0.00 0.00 38.51 1.52
3708 4902 3.762407 ACAAATTGGGGGCTGTTTTAC 57.238 42.857 0.00 0.00 0.00 2.01
3711 4905 4.064388 CAAATTGGGGGCTGTTTTACTTG 58.936 43.478 0.00 0.00 0.00 3.16
3712 4906 1.710816 TTGGGGGCTGTTTTACTTGG 58.289 50.000 0.00 0.00 0.00 3.61
3720 4949 2.979813 GCTGTTTTACTTGGATGCAACG 59.020 45.455 0.00 0.00 0.00 4.10
3722 4951 3.215151 TGTTTTACTTGGATGCAACGGA 58.785 40.909 0.00 0.00 0.00 4.69
3723 4952 3.632604 TGTTTTACTTGGATGCAACGGAA 59.367 39.130 0.00 0.00 0.00 4.30
3746 4975 2.368439 TGGCTAGCAAACCATGACATC 58.632 47.619 18.24 0.00 0.00 3.06
3747 4976 2.290832 TGGCTAGCAAACCATGACATCA 60.291 45.455 18.24 0.00 0.00 3.07
3748 4977 2.098117 GGCTAGCAAACCATGACATCAC 59.902 50.000 18.24 0.00 0.00 3.06
3749 4978 3.012518 GCTAGCAAACCATGACATCACT 58.987 45.455 10.63 0.00 0.00 3.41
3750 4979 4.191544 GCTAGCAAACCATGACATCACTA 58.808 43.478 10.63 0.00 0.00 2.74
3751 4980 4.034510 GCTAGCAAACCATGACATCACTAC 59.965 45.833 10.63 0.00 0.00 2.73
3752 4981 4.292186 AGCAAACCATGACATCACTACT 57.708 40.909 0.00 0.00 0.00 2.57
3753 4982 4.005650 AGCAAACCATGACATCACTACTG 58.994 43.478 0.00 0.00 0.00 2.74
3754 4983 3.127548 GCAAACCATGACATCACTACTGG 59.872 47.826 0.00 0.00 0.00 4.00
3755 4984 4.578871 CAAACCATGACATCACTACTGGA 58.421 43.478 6.30 0.00 0.00 3.86
3756 4985 5.188434 CAAACCATGACATCACTACTGGAT 58.812 41.667 6.30 0.00 0.00 3.41
3757 4986 5.441718 AACCATGACATCACTACTGGATT 57.558 39.130 6.30 0.00 0.00 3.01
3758 4987 5.028549 ACCATGACATCACTACTGGATTC 57.971 43.478 6.30 0.00 0.00 2.52
3759 4988 4.053983 CCATGACATCACTACTGGATTCG 58.946 47.826 0.00 0.00 0.00 3.34
3760 4989 3.165058 TGACATCACTACTGGATTCGC 57.835 47.619 0.00 0.00 0.00 4.70
3761 4990 2.159099 TGACATCACTACTGGATTCGCC 60.159 50.000 0.00 0.00 37.10 5.54
3762 4991 2.101582 GACATCACTACTGGATTCGCCT 59.898 50.000 0.00 0.00 37.63 5.52
3763 4992 3.296854 ACATCACTACTGGATTCGCCTA 58.703 45.455 0.00 0.00 37.63 3.93
3764 4993 3.068307 ACATCACTACTGGATTCGCCTAC 59.932 47.826 0.00 0.00 37.63 3.18
3765 4994 3.014304 TCACTACTGGATTCGCCTACT 57.986 47.619 0.00 0.00 37.63 2.57
3766 4995 3.362706 TCACTACTGGATTCGCCTACTT 58.637 45.455 0.00 0.00 37.63 2.24
3767 4996 3.767673 TCACTACTGGATTCGCCTACTTT 59.232 43.478 0.00 0.00 37.63 2.66
3768 4997 4.951715 TCACTACTGGATTCGCCTACTTTA 59.048 41.667 0.00 0.00 37.63 1.85
3769 4998 5.041940 CACTACTGGATTCGCCTACTTTAC 58.958 45.833 0.00 0.00 37.63 2.01
3770 4999 3.538634 ACTGGATTCGCCTACTTTACC 57.461 47.619 0.00 0.00 37.63 2.85
3781 5010 2.420129 CCTACTTTACCGAGCATTGCCT 60.420 50.000 4.70 0.00 0.00 4.75
3783 5012 3.560636 ACTTTACCGAGCATTGCCTAT 57.439 42.857 4.70 0.00 0.00 2.57
3784 5013 3.467803 ACTTTACCGAGCATTGCCTATC 58.532 45.455 4.70 0.00 0.00 2.08
3786 5015 4.344102 ACTTTACCGAGCATTGCCTATCTA 59.656 41.667 4.70 0.00 0.00 1.98
3799 5028 5.811399 TGCCTATCTAAACATCCGTTTTG 57.189 39.130 0.00 0.00 42.82 2.44
3801 5030 6.408035 TGCCTATCTAAACATCCGTTTTGTA 58.592 36.000 0.00 0.00 42.82 2.41
3821 5050 6.882610 TGTAAAGCAATTCTCAGTGACAAT 57.117 33.333 0.00 0.00 0.00 2.71
3830 5059 5.657470 TTCTCAGTGACAATCGTTCTTTG 57.343 39.130 0.00 0.00 0.00 2.77
3838 5067 6.198966 AGTGACAATCGTTCTTTGCAAAAATC 59.801 34.615 13.84 5.36 0.00 2.17
3848 5077 5.673514 TCTTTGCAAAAATCTTCCAGCTTT 58.326 33.333 13.84 0.00 0.00 3.51
3850 5079 6.598850 TCTTTGCAAAAATCTTCCAGCTTTTT 59.401 30.769 13.84 0.00 34.87 1.94
3862 5091 7.033185 TCTTCCAGCTTTTTGTTTTCAAGTAC 58.967 34.615 0.00 0.00 41.09 2.73
3864 5093 6.872920 TCCAGCTTTTTGTTTTCAAGTACAT 58.127 32.000 0.00 0.00 41.09 2.29
3885 5118 5.242838 ACATTTGGATTTTCTTTCACGGCTA 59.757 36.000 0.00 0.00 0.00 3.93
3892 5125 5.801350 TTTTCTTTCACGGCTAGATGATG 57.199 39.130 0.00 0.00 0.00 3.07
3906 5139 7.319646 GGCTAGATGATGTCTAAGGTTATGAG 58.680 42.308 0.00 0.00 38.91 2.90
3918 5151 7.603024 GTCTAAGGTTATGAGTTAGCACAACTT 59.397 37.037 5.33 0.00 0.00 2.66
3922 5155 1.604604 TGAGTTAGCACAACTTGGCC 58.395 50.000 0.00 0.00 0.00 5.36
3924 5157 1.081442 GTTAGCACAACTTGGCCGC 60.081 57.895 0.00 0.00 0.00 6.53
3932 5165 1.208259 CAACTTGGCCGCTGAAAAAC 58.792 50.000 0.00 0.00 0.00 2.43
3937 5170 1.079888 GGCCGCTGAAAAACCATGG 60.080 57.895 11.19 11.19 0.00 3.66
3946 5179 6.017523 CCGCTGAAAAACCATGGTTTAAAATT 60.018 34.615 36.76 27.98 46.22 1.82
3954 5187 4.346418 ACCATGGTTTAAAATTGCAGGTGA 59.654 37.500 13.00 0.00 0.00 4.02
3955 5188 5.012975 ACCATGGTTTAAAATTGCAGGTGAT 59.987 36.000 13.00 0.00 0.00 3.06
3956 5189 5.352016 CCATGGTTTAAAATTGCAGGTGATG 59.648 40.000 2.57 0.00 0.00 3.07
3957 5190 4.892433 TGGTTTAAAATTGCAGGTGATGG 58.108 39.130 0.00 0.00 0.00 3.51
3958 5191 4.590647 TGGTTTAAAATTGCAGGTGATGGA 59.409 37.500 0.00 0.00 0.00 3.41
3959 5192 4.929211 GGTTTAAAATTGCAGGTGATGGAC 59.071 41.667 0.00 0.00 0.00 4.02
3960 5193 4.433186 TTAAAATTGCAGGTGATGGACG 57.567 40.909 0.00 0.00 0.00 4.79
3961 5194 1.909700 AAATTGCAGGTGATGGACGT 58.090 45.000 0.00 0.00 0.00 4.34
3962 5195 1.167851 AATTGCAGGTGATGGACGTG 58.832 50.000 0.00 0.00 42.36 4.49
3964 5197 0.602638 TTGCAGGTGATGGACGTGTC 60.603 55.000 0.00 0.00 41.64 3.67
3968 5203 2.126618 GTGATGGACGTGTCGCGA 60.127 61.111 13.68 3.71 44.77 5.87
3980 5215 2.470140 CGTGTCGCGACATGTCTAAAAC 60.470 50.000 40.13 25.68 43.97 2.43
3984 5219 1.201769 CGCGACATGTCTAAAACCACG 60.202 52.381 22.95 8.69 0.00 4.94
3989 5224 3.071479 ACATGTCTAAAACCACGCGATT 58.929 40.909 15.93 0.18 0.00 3.34
4004 5239 1.771073 CGATTGCGGCGCTAAATCCA 61.771 55.000 33.26 7.71 0.00 3.41
4005 5240 0.317020 GATTGCGGCGCTAAATCCAC 60.317 55.000 33.26 9.60 0.00 4.02
4006 5241 1.029408 ATTGCGGCGCTAAATCCACA 61.029 50.000 33.26 5.98 0.00 4.17
4009 5244 0.100503 GCGGCGCTAAATCCACAAAT 59.899 50.000 26.86 0.00 0.00 2.32
4010 5245 1.469079 GCGGCGCTAAATCCACAAATT 60.469 47.619 26.86 0.00 0.00 1.82
4012 5247 2.598192 CGGCGCTAAATCCACAAATTTG 59.402 45.455 16.67 16.67 31.50 2.32
4013 5248 2.929398 GGCGCTAAATCCACAAATTTGG 59.071 45.455 21.74 6.48 38.10 3.28
4014 5249 3.584834 GCGCTAAATCCACAAATTTGGT 58.415 40.909 21.74 5.40 37.93 3.67
4015 5250 3.367630 GCGCTAAATCCACAAATTTGGTG 59.632 43.478 21.74 15.89 39.32 4.17
4016 5251 3.367630 CGCTAAATCCACAAATTTGGTGC 59.632 43.478 21.74 11.76 37.93 5.01
4017 5252 4.314121 GCTAAATCCACAAATTTGGTGCA 58.686 39.130 21.74 5.16 37.93 4.57
4018 5253 4.152223 GCTAAATCCACAAATTTGGTGCAC 59.848 41.667 21.74 8.80 37.93 4.57
4021 5256 2.898705 TCCACAAATTTGGTGCACAAC 58.101 42.857 21.74 2.20 39.19 3.32
4022 5257 2.499289 TCCACAAATTTGGTGCACAACT 59.501 40.909 21.74 2.78 39.19 3.16
4023 5258 3.055530 TCCACAAATTTGGTGCACAACTT 60.056 39.130 21.74 8.69 39.19 2.66
4024 5259 3.063725 CCACAAATTTGGTGCACAACTTG 59.936 43.478 21.74 13.71 39.19 3.16
4032 5267 2.715005 GCACAACTTGCGCTGTGA 59.285 55.556 26.12 0.00 44.68 3.58
4033 5268 1.283793 GCACAACTTGCGCTGTGAT 59.716 52.632 26.12 7.82 44.68 3.06
4035 5270 1.865248 GCACAACTTGCGCTGTGATTT 60.865 47.619 26.12 2.12 44.68 2.17
4037 5272 2.468777 CACAACTTGCGCTGTGATTTTC 59.531 45.455 19.51 0.00 44.68 2.29
4038 5273 2.358898 ACAACTTGCGCTGTGATTTTCT 59.641 40.909 9.73 0.00 0.00 2.52
4041 5276 2.160417 ACTTGCGCTGTGATTTTCTAGC 59.840 45.455 9.73 0.00 0.00 3.42
4042 5277 1.807139 TGCGCTGTGATTTTCTAGCA 58.193 45.000 9.73 0.00 35.98 3.49
4047 5282 3.127548 CGCTGTGATTTTCTAGCACCAAT 59.872 43.478 0.00 0.00 35.98 3.16
4048 5283 4.418392 GCTGTGATTTTCTAGCACCAATG 58.582 43.478 0.00 0.00 36.24 2.82
4049 5284 4.676196 GCTGTGATTTTCTAGCACCAATGG 60.676 45.833 0.00 0.00 36.24 3.16
4050 5285 3.193267 TGTGATTTTCTAGCACCAATGGC 59.807 43.478 0.00 0.00 0.00 4.40
4051 5286 3.193267 GTGATTTTCTAGCACCAATGGCA 59.807 43.478 0.00 0.00 0.00 4.92
4052 5287 3.444742 TGATTTTCTAGCACCAATGGCAG 59.555 43.478 0.00 0.00 0.00 4.85
4053 5288 1.176527 TTTCTAGCACCAATGGCAGC 58.823 50.000 8.99 8.99 0.00 5.25
4054 5289 0.680921 TTCTAGCACCAATGGCAGCC 60.681 55.000 3.66 3.66 0.00 4.85
4055 5290 1.378911 CTAGCACCAATGGCAGCCA 60.379 57.895 18.99 18.99 38.19 4.75
4056 5291 0.966875 CTAGCACCAATGGCAGCCAA 60.967 55.000 20.84 1.43 36.95 4.52
4057 5292 0.541530 TAGCACCAATGGCAGCCAAA 60.542 50.000 20.84 0.00 36.95 3.28
4058 5293 1.196104 AGCACCAATGGCAGCCAAAT 61.196 50.000 20.84 7.88 36.95 2.32
4059 5294 0.741927 GCACCAATGGCAGCCAAATC 60.742 55.000 20.84 0.86 36.95 2.17
4060 5295 0.609151 CACCAATGGCAGCCAAATCA 59.391 50.000 20.84 0.00 36.95 2.57
4102 5337 9.632807 TTTGTGGAAAACAACATAATGTATAGC 57.367 29.630 0.00 0.00 44.97 2.97
4104 5339 8.965819 TGTGGAAAACAACATAATGTATAGCAT 58.034 29.630 0.00 0.00 35.98 3.79
4122 5357 9.296400 GTATAGCATAGATTTAGCTAAGCACTC 57.704 37.037 13.62 7.35 43.32 3.51
4127 5362 7.518052 GCATAGATTTAGCTAAGCACTCACAAG 60.518 40.741 6.24 0.00 35.70 3.16
4131 5366 1.345741 AGCTAAGCACTCACAAGCTGA 59.654 47.619 0.00 0.00 41.78 4.26
4136 5371 1.134280 AGCACTCACAAGCTGAACACT 60.134 47.619 0.00 0.00 40.13 3.55
4141 5376 4.024556 CACTCACAAGCTGAACACTAAAGG 60.025 45.833 0.00 0.00 0.00 3.11
4148 5383 6.204882 ACAAGCTGAACACTAAAGGTTATGAC 59.795 38.462 0.00 0.00 30.87 3.06
4162 5398 5.445964 AGGTTATGACAAACAGTGTTTCCT 58.554 37.500 18.34 15.90 41.96 3.36
4163 5399 5.299279 AGGTTATGACAAACAGTGTTTCCTG 59.701 40.000 18.34 11.10 41.96 3.86
4167 5403 4.331968 TGACAAACAGTGTTTCCTGTCTT 58.668 39.130 27.34 4.31 44.74 3.01
4197 5434 1.757699 AGATAGGGCGAAGGAACAGTC 59.242 52.381 0.00 0.00 0.00 3.51
4207 5444 3.516615 GAAGGAACAGTCGGATCAAGAG 58.483 50.000 0.00 0.00 0.00 2.85
4217 5454 0.620556 GGATCAAGAGGCCACTGGAA 59.379 55.000 11.68 0.00 0.00 3.53
4231 5468 2.568956 CACTGGAAATGGAGAGACTGGA 59.431 50.000 0.00 0.00 0.00 3.86
4233 5470 3.652869 ACTGGAAATGGAGAGACTGGAAA 59.347 43.478 0.00 0.00 0.00 3.13
4234 5471 4.104738 ACTGGAAATGGAGAGACTGGAAAA 59.895 41.667 0.00 0.00 0.00 2.29
4235 5472 5.060427 TGGAAATGGAGAGACTGGAAAAA 57.940 39.130 0.00 0.00 0.00 1.94
4279 5521 0.670546 ACCGCGACACTCATTTCTGG 60.671 55.000 8.23 0.00 0.00 3.86
4280 5522 1.361668 CCGCGACACTCATTTCTGGG 61.362 60.000 8.23 0.00 0.00 4.45
4283 5525 1.026718 CGACACTCATTTCTGGGCCC 61.027 60.000 17.59 17.59 0.00 5.80
4285 5527 1.559682 GACACTCATTTCTGGGCCCTA 59.440 52.381 25.70 8.57 0.00 3.53
4303 5545 3.054361 CCCTATGTTAGCTTGGAACCACT 60.054 47.826 0.00 0.00 0.00 4.00
4306 5548 3.053831 TGTTAGCTTGGAACCACTAGC 57.946 47.619 8.87 8.87 0.00 3.42
4308 5550 1.263356 TAGCTTGGAACCACTAGCGT 58.737 50.000 10.57 4.32 38.62 5.07
4317 5559 4.161565 TGGAACCACTAGCGTAATCTGAAT 59.838 41.667 0.00 0.00 0.00 2.57
4320 5562 5.599999 ACCACTAGCGTAATCTGAATCTT 57.400 39.130 0.00 0.00 0.00 2.40
4322 5564 6.043411 ACCACTAGCGTAATCTGAATCTTTC 58.957 40.000 0.00 0.00 0.00 2.62
4327 5569 9.073475 ACTAGCGTAATCTGAATCTTTCTCTAT 57.927 33.333 0.00 0.00 0.00 1.98
4330 5572 7.170658 AGCGTAATCTGAATCTTTCTCTATTGC 59.829 37.037 0.00 0.00 0.00 3.56
4342 5584 2.819608 TCTCTATTGCCAGGTTGTTTGC 59.180 45.455 0.00 0.00 0.00 3.68
4344 5586 0.600557 TATTGCCAGGTTGTTTGCCG 59.399 50.000 0.00 0.00 0.00 5.69
4349 5591 1.008538 CAGGTTGTTTGCCGAGTGC 60.009 57.895 0.00 0.00 41.77 4.40
4381 5624 6.859112 AGGTACTAGGCTAATATGACCATG 57.141 41.667 0.00 0.00 36.02 3.66
4388 5631 4.599241 AGGCTAATATGACCATGGCTAAGT 59.401 41.667 13.04 0.00 0.00 2.24
4395 5638 8.588290 AATATGACCATGGCTAAGTGTTTTTA 57.412 30.769 13.04 0.00 0.00 1.52
4412 5656 7.981225 AGTGTTTTTATGCACTTGACAAAGAAT 59.019 29.630 0.00 0.00 42.61 2.40
4418 5662 9.598517 TTTATGCACTTGACAAAGAATTCTTTT 57.401 25.926 27.08 18.94 43.07 2.27
4436 5680 6.627395 TCTTTTGCGATTACCTTTCTTTGA 57.373 33.333 0.00 0.00 0.00 2.69
4437 5681 7.214467 TCTTTTGCGATTACCTTTCTTTGAT 57.786 32.000 0.00 0.00 0.00 2.57
4438 5682 8.330466 TCTTTTGCGATTACCTTTCTTTGATA 57.670 30.769 0.00 0.00 0.00 2.15
4439 5683 8.234546 TCTTTTGCGATTACCTTTCTTTGATAC 58.765 33.333 0.00 0.00 0.00 2.24
4441 5685 4.033587 TGCGATTACCTTTCTTTGATACGC 59.966 41.667 0.00 0.00 41.16 4.42
4483 5730 9.010366 GGCAAATAATTCTTTGTCGAGTTATTC 57.990 33.333 15.31 0.00 35.84 1.75
4510 5757 3.314553 TCTACGCTCAGCAAACACTTAC 58.685 45.455 0.00 0.00 0.00 2.34
4511 5758 2.240493 ACGCTCAGCAAACACTTACT 57.760 45.000 0.00 0.00 0.00 2.24
4512 5759 2.561569 ACGCTCAGCAAACACTTACTT 58.438 42.857 0.00 0.00 0.00 2.24
4513 5760 2.943033 ACGCTCAGCAAACACTTACTTT 59.057 40.909 0.00 0.00 0.00 2.66
4514 5761 3.377172 ACGCTCAGCAAACACTTACTTTT 59.623 39.130 0.00 0.00 0.00 2.27
4515 5762 4.142469 ACGCTCAGCAAACACTTACTTTTT 60.142 37.500 0.00 0.00 0.00 1.94
4541 5788 8.678593 TCTAAAAAGAAACTTCTCCTTTCTCC 57.321 34.615 0.00 0.00 37.04 3.71
4542 5789 8.495260 TCTAAAAAGAAACTTCTCCTTTCTCCT 58.505 33.333 0.00 0.00 37.04 3.69
4543 5790 7.962995 AAAAAGAAACTTCTCCTTTCTCCTT 57.037 32.000 0.00 0.00 37.04 3.36
4544 5791 7.962995 AAAAGAAACTTCTCCTTTCTCCTTT 57.037 32.000 0.00 0.00 37.04 3.11
4545 5792 7.962995 AAAGAAACTTCTCCTTTCTCCTTTT 57.037 32.000 0.00 0.00 37.04 2.27
4546 5793 7.962995 AAGAAACTTCTCCTTTCTCCTTTTT 57.037 32.000 0.00 0.00 37.04 1.94
4590 5837 6.463995 TTTTCACTTTTATGCACTGTTCCT 57.536 33.333 0.00 0.00 0.00 3.36
4591 5838 6.463995 TTTCACTTTTATGCACTGTTCCTT 57.536 33.333 0.00 0.00 0.00 3.36
4592 5839 6.463995 TTCACTTTTATGCACTGTTCCTTT 57.536 33.333 0.00 0.00 0.00 3.11
4593 5840 6.072112 TCACTTTTATGCACTGTTCCTTTC 57.928 37.500 0.00 0.00 0.00 2.62
4594 5841 5.827797 TCACTTTTATGCACTGTTCCTTTCT 59.172 36.000 0.00 0.00 0.00 2.52
4595 5842 6.995686 TCACTTTTATGCACTGTTCCTTTCTA 59.004 34.615 0.00 0.00 0.00 2.10
4596 5843 7.500892 TCACTTTTATGCACTGTTCCTTTCTAA 59.499 33.333 0.00 0.00 0.00 2.10
4597 5844 8.134895 CACTTTTATGCACTGTTCCTTTCTAAA 58.865 33.333 0.00 0.00 0.00 1.85
4598 5845 8.860088 ACTTTTATGCACTGTTCCTTTCTAAAT 58.140 29.630 0.00 0.00 0.00 1.40
4603 5850 8.814038 ATGCACTGTTCCTTTCTAAATAATCT 57.186 30.769 0.00 0.00 0.00 2.40
4604 5851 8.044060 TGCACTGTTCCTTTCTAAATAATCTG 57.956 34.615 0.00 0.00 0.00 2.90
4605 5852 7.665559 TGCACTGTTCCTTTCTAAATAATCTGT 59.334 33.333 0.00 0.00 0.00 3.41
4606 5853 8.515414 GCACTGTTCCTTTCTAAATAATCTGTT 58.485 33.333 0.00 0.00 0.00 3.16
4618 5865 9.179909 TCTAAATAATCTGTTTATTTTCCCGCA 57.820 29.630 17.06 3.25 44.43 5.69
4619 5866 9.796120 CTAAATAATCTGTTTATTTTCCCGCAA 57.204 29.630 17.06 2.74 44.43 4.85
4621 5868 9.495572 AAATAATCTGTTTATTTTCCCGCAAAA 57.504 25.926 9.55 0.00 44.43 2.44
4622 5869 9.495572 AATAATCTGTTTATTTTCCCGCAAAAA 57.504 25.926 0.00 0.00 37.22 1.94
4668 5915 9.645059 CATTTTCTTTTCCCTTCTCTATTTTCC 57.355 33.333 0.00 0.00 0.00 3.13
4669 5916 7.776618 TTTCTTTTCCCTTCTCTATTTTCCC 57.223 36.000 0.00 0.00 0.00 3.97
4670 5917 5.827756 TCTTTTCCCTTCTCTATTTTCCCC 58.172 41.667 0.00 0.00 0.00 4.81
4671 5918 5.555941 TCTTTTCCCTTCTCTATTTTCCCCT 59.444 40.000 0.00 0.00 0.00 4.79
4672 5919 5.452341 TTTCCCTTCTCTATTTTCCCCTC 57.548 43.478 0.00 0.00 0.00 4.30
4673 5920 4.369809 TCCCTTCTCTATTTTCCCCTCT 57.630 45.455 0.00 0.00 0.00 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
85 87 0.237235 TCACCGCGCAAAATGACTTC 59.763 50.000 8.75 0.00 0.00 3.01
122 124 2.091885 AGAAAATGTGGGTGGTGTGAGT 60.092 45.455 0.00 0.00 0.00 3.41
216 482 0.541764 TTGGGCCCATCAAACTGACC 60.542 55.000 29.23 0.00 0.00 4.02
673 1283 9.941991 CTTGTTTTACAAAAATCGCATCTATTG 57.058 29.630 0.00 0.00 37.69 1.90
710 1322 7.284074 TGTCACTTTTAGAAGGTACATTCCAA 58.716 34.615 16.21 6.83 37.19 3.53
713 1325 8.603242 TCTTGTCACTTTTAGAAGGTACATTC 57.397 34.615 12.25 12.25 37.19 2.67
737 1349 9.313118 ACAAGTTGACCTTTCAATTTAACATTC 57.687 29.630 10.54 0.00 43.72 2.67
753 1365 7.904461 CACAATTTTCAATTTCACAAGTTGACC 59.096 33.333 10.54 0.00 32.26 4.02
777 1389 7.418840 TGAAATAAACCATTGCACATTTCAC 57.581 32.000 0.00 0.00 37.43 3.18
857 1641 1.756538 CACTTCCCACTGGCTTGTTTT 59.243 47.619 0.00 0.00 0.00 2.43
1069 2035 3.642705 CTGACATTTCAGTCTCACGTCA 58.357 45.455 0.40 0.00 43.95 4.35
1090 2056 2.533266 TCTTCCAGAGTGTCACAAGC 57.467 50.000 5.62 0.00 0.00 4.01
1354 2346 8.889717 ACGCAGTTATTAATTAGCACAACTATT 58.110 29.630 0.00 0.00 37.78 1.73
1357 2349 6.737254 ACGCAGTTATTAATTAGCACAACT 57.263 33.333 0.00 0.00 37.78 3.16
1358 2350 7.902032 TCTACGCAGTTATTAATTAGCACAAC 58.098 34.615 0.00 0.00 37.78 3.32
1360 2352 7.485810 TCTCTACGCAGTTATTAATTAGCACA 58.514 34.615 0.00 0.00 37.78 4.57
1361 2353 7.925703 TCTCTACGCAGTTATTAATTAGCAC 57.074 36.000 0.00 0.00 37.78 4.40
1367 2359 6.931281 ACATGCATCTCTACGCAGTTATTAAT 59.069 34.615 0.00 0.00 37.78 1.40
1371 2363 4.327982 ACATGCATCTCTACGCAGTTAT 57.672 40.909 0.00 0.00 37.78 1.89
1448 2448 2.401583 ATCACGCACATGCTAGGAAA 57.598 45.000 1.82 0.00 39.32 3.13
1449 2449 2.279741 GAATCACGCACATGCTAGGAA 58.720 47.619 1.82 0.00 39.32 3.36
1451 2451 1.655484 TGAATCACGCACATGCTAGG 58.345 50.000 1.82 0.00 39.32 3.02
1455 2459 2.549329 TGGATATGAATCACGCACATGC 59.451 45.455 0.00 0.00 33.41 4.06
1503 2507 4.668177 GCACTGCACGTACGTATCAAAAAT 60.668 41.667 22.34 5.41 0.00 1.82
1532 2536 6.129179 TGTCACTCAGTGGATGACAGATATA 58.871 40.000 20.12 3.74 45.89 0.86
1551 2555 1.417890 AGGTATAGGGCATGCTGTCAC 59.582 52.381 18.92 9.26 0.00 3.67
1563 2567 6.348622 CGTGCAGACTGATTACTAGGTATAGG 60.349 46.154 6.65 0.00 32.90 2.57
1566 2570 4.278669 CCGTGCAGACTGATTACTAGGTAT 59.721 45.833 6.65 0.00 0.00 2.73
1774 2793 4.426313 GGTTCCGGGGGCCAAGAG 62.426 72.222 4.39 0.00 0.00 2.85
1862 2883 2.994699 CCAACATGGGTCGCCCTA 59.005 61.111 14.76 0.00 45.70 3.53
1873 2894 1.901464 GTGGTTCGGTGCCCAACAT 60.901 57.895 1.50 0.00 31.17 2.71
1882 2903 4.446413 GCCGGATCGTGGTTCGGT 62.446 66.667 5.05 0.00 43.87 4.69
1892 2913 3.615509 TTCACCAACCCGCCGGATC 62.616 63.158 5.05 0.00 0.00 3.36
1898 2919 3.365265 CAGCCTTCACCAACCCGC 61.365 66.667 0.00 0.00 0.00 6.13
1899 2920 1.966451 GTCAGCCTTCACCAACCCG 60.966 63.158 0.00 0.00 0.00 5.28
1901 2922 1.070786 TCGTCAGCCTTCACCAACC 59.929 57.895 0.00 0.00 0.00 3.77
1904 2925 2.338620 CGTCGTCAGCCTTCACCA 59.661 61.111 0.00 0.00 0.00 4.17
1906 2927 3.112709 GCCGTCGTCAGCCTTCAC 61.113 66.667 0.00 0.00 0.00 3.18
1968 2989 3.467226 TCGGCCGGGGTCATCTTC 61.467 66.667 27.83 0.00 0.00 2.87
1995 3016 1.597854 CACCAGGCTGAACGCAAGA 60.598 57.895 17.94 0.00 41.67 3.02
2082 3103 0.669318 TCACGTTTGCCTCGATCACC 60.669 55.000 0.00 0.00 0.00 4.02
2084 3105 1.144969 GTTCACGTTTGCCTCGATCA 58.855 50.000 0.00 0.00 0.00 2.92
2093 3114 0.309302 TTCCATGGCGTTCACGTTTG 59.691 50.000 6.96 0.00 42.22 2.93
2101 3122 3.118454 CGCGTCTTCCATGGCGTT 61.118 61.111 6.96 0.00 43.36 4.84
2155 3176 1.134491 GGACGGATCCCTCGTTTTGAT 60.134 52.381 6.06 0.00 41.22 2.57
2202 3223 1.072505 GTCGGCTTCTTCCCCAACA 59.927 57.895 0.00 0.00 0.00 3.33
2207 3228 1.130561 CATTTTCGTCGGCTTCTTCCC 59.869 52.381 0.00 0.00 0.00 3.97
2209 3230 1.465856 GCCATTTTCGTCGGCTTCTTC 60.466 52.381 0.00 0.00 42.78 2.87
2211 3232 0.605319 TGCCATTTTCGTCGGCTTCT 60.605 50.000 0.00 0.00 46.39 2.85
2216 3237 2.485122 GCCTGCCATTTTCGTCGG 59.515 61.111 0.00 0.00 0.00 4.79
2253 3373 2.504274 GGTCACCACGGGAGACACA 61.504 63.158 17.44 0.00 43.38 3.72
2288 3408 5.446741 GCCGCGTATTCAAGAATTTCAAGTA 60.447 40.000 4.92 0.00 32.50 2.24
2389 3509 2.579738 GACGCACTCCTTCTCCCC 59.420 66.667 0.00 0.00 0.00 4.81
2404 3524 2.092882 CGTCCTCCTTTTCGGCGAC 61.093 63.158 10.16 0.00 0.00 5.19
2421 3541 1.004595 TGTCGACGTACTCCTCATCG 58.995 55.000 11.62 0.00 0.00 3.84
2535 3655 1.142748 GCCGATGTCTGGGTCAGAG 59.857 63.158 0.00 0.00 41.46 3.35
2553 3673 1.546029 TCACTGGAATCACTGTCGGAG 59.454 52.381 0.00 0.00 0.00 4.63
2594 3720 1.817099 CCCTTCTCATCGCAGTGGC 60.817 63.158 0.00 0.00 0.00 5.01
2653 3779 2.173126 AGAACTGATGGAGCTAGGCT 57.827 50.000 0.00 0.00 43.88 4.58
2654 3780 2.998316 AAGAACTGATGGAGCTAGGC 57.002 50.000 0.00 0.00 0.00 3.93
2655 3781 3.198635 TGGAAAGAACTGATGGAGCTAGG 59.801 47.826 0.00 0.00 0.00 3.02
2656 3782 4.478206 TGGAAAGAACTGATGGAGCTAG 57.522 45.455 0.00 0.00 0.00 3.42
2657 3783 4.908601 TTGGAAAGAACTGATGGAGCTA 57.091 40.909 0.00 0.00 0.00 3.32
2687 3813 1.210155 GTTGGTGGTGCAGAATCGC 59.790 57.895 0.00 0.00 0.00 4.58
2704 3830 2.743718 CTCCAGTGTTGGCTCCGT 59.256 61.111 0.00 0.00 44.63 4.69
2801 3927 3.224324 GTAGCTCCGATGGCCCGA 61.224 66.667 0.00 0.00 0.00 5.14
2803 3929 1.686325 TTCTGTAGCTCCGATGGCCC 61.686 60.000 0.00 0.00 0.00 5.80
2830 3968 5.430007 AGCTACACTACTATCGTTCTCTGT 58.570 41.667 0.00 0.00 0.00 3.41
2840 3978 6.369629 AGAACTGATGGAGCTACACTACTAT 58.630 40.000 0.00 0.00 0.00 2.12
2844 3982 6.436218 TGTAAAGAACTGATGGAGCTACACTA 59.564 38.462 0.00 0.00 0.00 2.74
2848 3986 7.435068 TTTTGTAAAGAACTGATGGAGCTAC 57.565 36.000 0.00 0.00 0.00 3.58
2867 4005 2.610232 GCAGAATCGCCAACCATTTTGT 60.610 45.455 0.00 0.00 0.00 2.83
2890 4038 2.898920 ATTGCTGGCACCGATGGAGG 62.899 60.000 0.00 0.00 37.30 4.30
2892 4040 0.179048 CTATTGCTGGCACCGATGGA 60.179 55.000 0.00 0.00 0.00 3.41
2900 4051 1.209504 GTACCACCTCTATTGCTGGCA 59.790 52.381 0.00 0.00 0.00 4.92
2904 4055 2.169352 CTGCAGTACCACCTCTATTGCT 59.831 50.000 5.25 0.00 30.32 3.91
2908 4059 3.389329 CCATTCTGCAGTACCACCTCTAT 59.611 47.826 14.67 0.00 0.00 1.98
2910 4061 1.556911 CCATTCTGCAGTACCACCTCT 59.443 52.381 14.67 0.00 0.00 3.69
2921 4072 3.008375 ACTGCTAAGTTCTCCATTCTGCA 59.992 43.478 0.00 0.00 30.14 4.41
2936 4090 3.019003 GCCGGAGCTGGACTGCTAA 62.019 63.158 5.05 0.00 44.17 3.09
2960 4126 1.978617 CCACCATGCACCTTGGGAC 60.979 63.158 9.58 0.00 38.64 4.46
2971 4137 1.601759 GGCCATCGGATCCACCATG 60.602 63.158 13.41 10.15 38.90 3.66
2995 4161 0.973632 TCTGCATTCTGTACCACCGT 59.026 50.000 0.00 0.00 0.00 4.83
3084 4253 4.141287 CAAAACCATTCTGTACCACCTCA 58.859 43.478 0.00 0.00 0.00 3.86
3124 4305 1.303561 GAACTGATGGTGCTGGGCA 60.304 57.895 0.00 0.00 35.60 5.36
3126 4307 1.021390 GTCGAACTGATGGTGCTGGG 61.021 60.000 0.00 0.00 0.00 4.45
3130 4311 2.086054 AGAAGTCGAACTGATGGTGC 57.914 50.000 0.00 0.00 0.00 5.01
3132 4313 4.608948 AGAAAGAAGTCGAACTGATGGT 57.391 40.909 0.00 0.00 0.00 3.55
3136 4317 5.301045 TCACCTTAGAAAGAAGTCGAACTGA 59.699 40.000 0.00 0.00 0.00 3.41
3139 4320 6.645415 TCATTCACCTTAGAAAGAAGTCGAAC 59.355 38.462 0.00 0.00 0.00 3.95
3140 4321 6.755206 TCATTCACCTTAGAAAGAAGTCGAA 58.245 36.000 0.00 0.00 0.00 3.71
3141 4322 6.340962 TCATTCACCTTAGAAAGAAGTCGA 57.659 37.500 0.00 0.00 0.00 4.20
3142 4323 6.036517 CCATCATTCACCTTAGAAAGAAGTCG 59.963 42.308 0.00 0.00 30.22 4.18
3143 4324 6.881602 ACCATCATTCACCTTAGAAAGAAGTC 59.118 38.462 0.00 0.00 30.22 3.01
3145 4326 7.609532 AGAACCATCATTCACCTTAGAAAGAAG 59.390 37.037 0.00 0.00 30.22 2.85
3179 4363 0.249447 CGGTGCAGGCTTCGATGATA 60.249 55.000 1.89 0.00 0.00 2.15
3228 4412 0.469494 TTGCAGGCTTGTCTGAGACA 59.531 50.000 11.93 11.93 41.09 3.41
3229 4413 0.871057 GTTGCAGGCTTGTCTGAGAC 59.129 55.000 5.47 5.47 36.93 3.36
3232 4416 1.168407 GCAGTTGCAGGCTTGTCTGA 61.168 55.000 16.75 0.00 41.59 3.27
3234 4418 2.256591 CGCAGTTGCAGGCTTGTCT 61.257 57.895 4.84 0.00 42.21 3.41
3353 4537 1.222936 CTCTCCATGTCCACCAGCC 59.777 63.158 0.00 0.00 0.00 4.85
3363 4547 3.234349 ATGGCCGACCTCTCCATG 58.766 61.111 0.00 0.00 39.01 3.66
3435 4619 2.352422 TGGCTCACCATGTGCTCC 59.648 61.111 3.21 0.00 42.67 4.70
3454 4638 1.671379 GAACACCAGGCCGTCTTCC 60.671 63.158 0.00 0.00 0.00 3.46
3455 4639 1.671379 GGAACACCAGGCCGTCTTC 60.671 63.158 0.00 0.00 0.00 2.87
3552 4736 0.109597 CGGAGATTGGTTGTTGCTGC 60.110 55.000 0.00 0.00 0.00 5.25
3557 4741 2.356135 CGGAATCGGAGATTGGTTGTT 58.644 47.619 0.00 0.00 45.12 2.83
3558 4742 2.024176 CGGAATCGGAGATTGGTTGT 57.976 50.000 0.00 0.00 45.12 3.32
3574 4758 2.342279 CAGGTCTTCAACGCCGGA 59.658 61.111 5.05 0.00 0.00 5.14
3630 4817 3.094062 GCATGTCTAGAGGCGGGCA 62.094 63.158 3.78 0.00 0.00 5.36
3637 4831 2.133553 CTTCATGCGGCATGTCTAGAG 58.866 52.381 34.49 22.70 41.98 2.43
3638 4832 1.756538 TCTTCATGCGGCATGTCTAGA 59.243 47.619 34.49 29.49 41.98 2.43
3677 4871 4.399934 GCCCCCAATTTGTTTTCGATAGTA 59.600 41.667 0.00 0.00 37.40 1.82
3678 4872 3.194755 GCCCCCAATTTGTTTTCGATAGT 59.805 43.478 0.00 0.00 37.40 2.12
3679 4873 3.447229 AGCCCCCAATTTGTTTTCGATAG 59.553 43.478 0.00 0.00 0.00 2.08
3681 4875 2.028203 CAGCCCCCAATTTGTTTTCGAT 60.028 45.455 0.00 0.00 0.00 3.59
3682 4876 1.342819 CAGCCCCCAATTTGTTTTCGA 59.657 47.619 0.00 0.00 0.00 3.71
3683 4877 1.069978 ACAGCCCCCAATTTGTTTTCG 59.930 47.619 0.00 0.00 0.00 3.46
3684 4878 2.928801 ACAGCCCCCAATTTGTTTTC 57.071 45.000 0.00 0.00 0.00 2.29
3685 4879 3.660970 AAACAGCCCCCAATTTGTTTT 57.339 38.095 0.00 0.00 39.88 2.43
3689 4883 4.064388 CAAGTAAAACAGCCCCCAATTTG 58.936 43.478 0.00 0.00 0.00 2.32
3690 4884 3.072330 CCAAGTAAAACAGCCCCCAATTT 59.928 43.478 0.00 0.00 0.00 1.82
3696 4890 1.204704 GCATCCAAGTAAAACAGCCCC 59.795 52.381 0.00 0.00 0.00 5.80
3699 4893 2.979813 CGTTGCATCCAAGTAAAACAGC 59.020 45.455 0.00 0.00 0.00 4.40
3707 4901 1.608590 CAACTTCCGTTGCATCCAAGT 59.391 47.619 0.00 0.00 43.47 3.16
3708 4902 2.336554 CAACTTCCGTTGCATCCAAG 57.663 50.000 0.00 0.00 43.47 3.61
3720 4949 1.616159 TGGTTTGCTAGCCAACTTCC 58.384 50.000 25.67 13.77 31.97 3.46
3722 4951 2.558359 GTCATGGTTTGCTAGCCAACTT 59.442 45.455 25.67 14.22 38.38 2.66
3723 4952 2.162681 GTCATGGTTTGCTAGCCAACT 58.837 47.619 25.67 9.15 38.38 3.16
3746 4975 3.802948 AAGTAGGCGAATCCAGTAGTG 57.197 47.619 0.00 0.00 37.29 2.74
3747 4976 4.099113 GGTAAAGTAGGCGAATCCAGTAGT 59.901 45.833 0.00 0.00 37.29 2.73
3748 4977 4.618965 GGTAAAGTAGGCGAATCCAGTAG 58.381 47.826 0.00 0.00 37.29 2.57
3749 4978 3.067180 CGGTAAAGTAGGCGAATCCAGTA 59.933 47.826 0.00 0.00 37.29 2.74
3750 4979 2.159142 CGGTAAAGTAGGCGAATCCAGT 60.159 50.000 0.00 0.00 37.29 4.00
3751 4980 2.100252 TCGGTAAAGTAGGCGAATCCAG 59.900 50.000 0.00 0.00 37.29 3.86
3752 4981 2.100252 CTCGGTAAAGTAGGCGAATCCA 59.900 50.000 0.00 0.00 37.29 3.41
3753 4982 2.740452 CTCGGTAAAGTAGGCGAATCC 58.260 52.381 0.00 0.00 0.00 3.01
3754 4983 2.125685 GCTCGGTAAAGTAGGCGAATC 58.874 52.381 0.00 0.00 0.00 2.52
3755 4984 1.479323 TGCTCGGTAAAGTAGGCGAAT 59.521 47.619 0.00 0.00 0.00 3.34
3756 4985 0.889994 TGCTCGGTAAAGTAGGCGAA 59.110 50.000 0.00 0.00 0.00 4.70
3757 4986 1.108776 ATGCTCGGTAAAGTAGGCGA 58.891 50.000 0.00 0.00 0.00 5.54
3758 4987 1.593006 CAATGCTCGGTAAAGTAGGCG 59.407 52.381 0.00 0.00 0.00 5.52
3759 4988 1.330829 GCAATGCTCGGTAAAGTAGGC 59.669 52.381 0.00 0.00 0.00 3.93
3760 4989 1.940613 GGCAATGCTCGGTAAAGTAGG 59.059 52.381 4.82 0.00 0.00 3.18
3761 4990 2.906354 AGGCAATGCTCGGTAAAGTAG 58.094 47.619 4.82 0.00 0.00 2.57
3762 4991 4.344102 AGATAGGCAATGCTCGGTAAAGTA 59.656 41.667 4.82 0.00 0.00 2.24
3763 4992 3.134804 AGATAGGCAATGCTCGGTAAAGT 59.865 43.478 4.82 0.00 0.00 2.66
3764 4993 3.733337 AGATAGGCAATGCTCGGTAAAG 58.267 45.455 4.82 0.00 0.00 1.85
3765 4994 3.838244 AGATAGGCAATGCTCGGTAAA 57.162 42.857 4.82 0.00 0.00 2.01
3766 4995 4.948341 TTAGATAGGCAATGCTCGGTAA 57.052 40.909 4.82 0.00 0.00 2.85
3767 4996 4.100344 TGTTTAGATAGGCAATGCTCGGTA 59.900 41.667 4.82 0.00 0.00 4.02
3768 4997 3.118408 TGTTTAGATAGGCAATGCTCGGT 60.118 43.478 4.82 0.00 0.00 4.69
3769 4998 3.466836 TGTTTAGATAGGCAATGCTCGG 58.533 45.455 4.82 0.00 0.00 4.63
3770 4999 4.153117 GGATGTTTAGATAGGCAATGCTCG 59.847 45.833 4.82 0.00 0.00 5.03
3799 5028 6.017933 CGATTGTCACTGAGAATTGCTTTAC 58.982 40.000 3.08 0.00 0.00 2.01
3801 5030 4.516698 ACGATTGTCACTGAGAATTGCTTT 59.483 37.500 13.70 0.00 32.13 3.51
3821 5050 5.255710 TGGAAGATTTTTGCAAAGAACGA 57.744 34.783 12.41 0.00 0.00 3.85
3838 5067 6.811170 TGTACTTGAAAACAAAAAGCTGGAAG 59.189 34.615 0.00 0.00 0.00 3.46
3850 5079 9.883142 AAGAAAATCCAAATGTACTTGAAAACA 57.117 25.926 0.00 0.00 0.00 2.83
3862 5091 4.559153 AGCCGTGAAAGAAAATCCAAATG 58.441 39.130 0.00 0.00 0.00 2.32
3864 5093 5.067273 TCTAGCCGTGAAAGAAAATCCAAA 58.933 37.500 0.00 0.00 0.00 3.28
3873 5102 3.701542 AGACATCATCTAGCCGTGAAAGA 59.298 43.478 0.00 0.00 35.15 2.52
3885 5118 8.364142 GCTAACTCATAACCTTAGACATCATCT 58.636 37.037 0.00 0.00 41.95 2.90
3892 5125 7.097834 AGTTGTGCTAACTCATAACCTTAGAC 58.902 38.462 1.75 0.00 38.37 2.59
3906 5139 1.081442 GCGGCCAAGTTGTGCTAAC 60.081 57.895 2.24 0.00 0.00 2.34
3918 5151 1.664873 CATGGTTTTTCAGCGGCCA 59.335 52.632 2.24 0.00 0.00 5.36
3922 5155 5.975410 TTTTAAACCATGGTTTTTCAGCG 57.025 34.783 40.00 2.40 44.84 5.18
3924 5157 7.701445 TGCAATTTTAAACCATGGTTTTTCAG 58.299 30.769 40.00 26.49 44.84 3.02
3932 5165 4.892433 TCACCTGCAATTTTAAACCATGG 58.108 39.130 11.19 11.19 0.00 3.66
3937 5170 4.621034 CGTCCATCACCTGCAATTTTAAAC 59.379 41.667 0.00 0.00 0.00 2.01
3946 5179 1.005037 GACACGTCCATCACCTGCA 60.005 57.895 0.00 0.00 0.00 4.41
3954 5187 1.805539 CATGTCGCGACACGTCCAT 60.806 57.895 41.29 23.56 45.05 3.41
3955 5188 2.430075 CATGTCGCGACACGTCCA 60.430 61.111 41.29 20.41 45.05 4.02
3956 5189 2.430244 ACATGTCGCGACACGTCC 60.430 61.111 41.29 14.84 45.05 4.79
3957 5190 3.061674 GACATGTCGCGACACGTC 58.938 61.111 40.84 40.84 45.26 4.34
3958 5191 0.239082 TTAGACATGTCGCGACACGT 59.761 50.000 41.29 39.30 45.05 4.49
3959 5192 1.333115 TTTAGACATGTCGCGACACG 58.667 50.000 41.29 36.22 45.05 4.49
3960 5193 2.159881 GGTTTTAGACATGTCGCGACAC 60.160 50.000 41.29 28.79 45.05 3.67
3961 5194 2.063266 GGTTTTAGACATGTCGCGACA 58.937 47.619 40.57 40.57 46.44 4.35
3962 5195 2.063266 TGGTTTTAGACATGTCGCGAC 58.937 47.619 31.66 31.66 34.09 5.19
3964 5197 1.201769 CGTGGTTTTAGACATGTCGCG 60.202 52.381 19.85 9.82 34.09 5.87
3968 5203 2.157834 TCGCGTGGTTTTAGACATGT 57.842 45.000 5.77 0.00 0.00 3.21
3989 5224 1.237954 TTTGTGGATTTAGCGCCGCA 61.238 50.000 13.36 0.00 42.49 5.69
3992 5227 2.929398 CCAAATTTGTGGATTTAGCGCC 59.071 45.455 16.73 0.00 41.65 6.53
3997 5232 5.282055 TGTGCACCAAATTTGTGGATTTA 57.718 34.783 15.69 5.51 41.65 1.40
4021 5256 2.160219 TGCTAGAAAATCACAGCGCAAG 59.840 45.455 11.47 3.78 36.81 4.01
4022 5257 2.095768 GTGCTAGAAAATCACAGCGCAA 60.096 45.455 11.47 0.00 42.61 4.85
4023 5258 1.464608 GTGCTAGAAAATCACAGCGCA 59.535 47.619 11.47 0.00 42.61 6.09
4024 5259 1.202076 GGTGCTAGAAAATCACAGCGC 60.202 52.381 0.00 0.00 42.40 5.92
4026 5261 4.418392 CATTGGTGCTAGAAAATCACAGC 58.582 43.478 0.00 0.00 32.69 4.40
4027 5262 4.676196 GCCATTGGTGCTAGAAAATCACAG 60.676 45.833 4.26 0.00 32.69 3.66
4028 5263 3.193267 GCCATTGGTGCTAGAAAATCACA 59.807 43.478 4.26 0.00 32.69 3.58
4029 5264 3.193267 TGCCATTGGTGCTAGAAAATCAC 59.807 43.478 4.26 0.00 0.00 3.06
4031 5266 3.736126 GCTGCCATTGGTGCTAGAAAATC 60.736 47.826 4.26 0.00 0.00 2.17
4032 5267 2.167075 GCTGCCATTGGTGCTAGAAAAT 59.833 45.455 4.26 0.00 0.00 1.82
4033 5268 1.545582 GCTGCCATTGGTGCTAGAAAA 59.454 47.619 4.26 0.00 0.00 2.29
4035 5270 0.680921 GGCTGCCATTGGTGCTAGAA 60.681 55.000 15.17 0.00 0.00 2.10
4037 5272 0.966875 TTGGCTGCCATTGGTGCTAG 60.967 55.000 24.03 7.91 31.53 3.42
4038 5273 0.541530 TTTGGCTGCCATTGGTGCTA 60.542 50.000 24.03 1.01 31.53 3.49
4041 5276 0.609151 TGATTTGGCTGCCATTGGTG 59.391 50.000 24.03 0.00 31.53 4.17
4042 5277 0.609662 GTGATTTGGCTGCCATTGGT 59.390 50.000 24.03 8.74 31.53 3.67
4047 5282 2.277591 GCCTGTGATTTGGCTGCCA 61.278 57.895 19.30 19.30 45.26 4.92
4048 5283 2.575461 GCCTGTGATTTGGCTGCC 59.425 61.111 12.87 12.87 45.26 4.85
4049 5284 1.660560 ATCGCCTGTGATTTGGCTGC 61.661 55.000 0.00 0.00 46.42 5.25
4050 5285 0.813184 AATCGCCTGTGATTTGGCTG 59.187 50.000 0.20 0.00 46.42 4.85
4051 5286 1.549203 AAATCGCCTGTGATTTGGCT 58.451 45.000 15.71 0.00 44.63 4.75
4052 5287 3.502191 TTAAATCGCCTGTGATTTGGC 57.498 42.857 22.47 0.00 45.56 4.52
4053 5288 3.859386 GCTTTAAATCGCCTGTGATTTGG 59.141 43.478 22.47 15.14 45.56 3.28
4054 5289 4.737054 AGCTTTAAATCGCCTGTGATTTG 58.263 39.130 22.47 11.33 45.56 2.32
4056 5291 5.163513 CAAAGCTTTAAATCGCCTGTGATT 58.836 37.500 12.25 0.20 40.22 2.57
4057 5292 4.218417 ACAAAGCTTTAAATCGCCTGTGAT 59.782 37.500 12.25 0.00 0.00 3.06
4058 5293 3.568007 ACAAAGCTTTAAATCGCCTGTGA 59.432 39.130 12.25 0.00 0.00 3.58
4059 5294 3.670055 CACAAAGCTTTAAATCGCCTGTG 59.330 43.478 12.25 9.42 35.53 3.66
4060 5295 3.305335 CCACAAAGCTTTAAATCGCCTGT 60.305 43.478 12.25 0.00 0.00 4.00
4102 5337 7.518052 GCTTGTGAGTGCTTAGCTAAATCTATG 60.518 40.741 7.74 0.00 0.00 2.23
4104 5339 5.812642 GCTTGTGAGTGCTTAGCTAAATCTA 59.187 40.000 7.74 0.00 0.00 1.98
4106 5341 4.633565 AGCTTGTGAGTGCTTAGCTAAATC 59.366 41.667 7.74 3.25 40.19 2.17
4107 5342 4.394300 CAGCTTGTGAGTGCTTAGCTAAAT 59.606 41.667 7.74 0.00 40.01 1.40
4122 5357 4.900635 AACCTTTAGTGTTCAGCTTGTG 57.099 40.909 0.00 0.00 0.00 3.33
4127 5362 6.554334 TTGTCATAACCTTTAGTGTTCAGC 57.446 37.500 0.00 0.00 0.00 4.26
4131 5366 7.338449 ACACTGTTTGTCATAACCTTTAGTGTT 59.662 33.333 0.00 0.00 37.85 3.32
4136 5371 7.558444 AGGAAACACTGTTTGTCATAACCTTTA 59.442 33.333 11.97 0.00 37.51 1.85
4167 5403 2.097036 TCGCCCTATCTCTTTGTCGAA 58.903 47.619 0.00 0.00 0.00 3.71
4197 5434 1.153289 CCAGTGGCCTCTTGATCCG 60.153 63.158 4.10 0.00 0.00 4.18
4207 5444 0.620556 TCTCTCCATTTCCAGTGGCC 59.379 55.000 3.51 0.00 36.66 5.36
4239 5476 8.708742 CGCGGTTATTTCATATTTCTCTCATAA 58.291 33.333 0.00 0.00 0.00 1.90
4240 5477 8.085909 TCGCGGTTATTTCATATTTCTCTCATA 58.914 33.333 6.13 0.00 0.00 2.15
4243 5480 6.200286 TGTCGCGGTTATTTCATATTTCTCTC 59.800 38.462 6.13 0.00 0.00 3.20
4254 5491 4.092968 AGAAATGAGTGTCGCGGTTATTTC 59.907 41.667 6.13 13.57 34.79 2.17
4258 5500 2.333926 CAGAAATGAGTGTCGCGGTTA 58.666 47.619 6.13 0.00 0.00 2.85
4279 5521 2.298610 GTTCCAAGCTAACATAGGGCC 58.701 52.381 0.00 0.00 0.00 5.80
4280 5522 2.298610 GGTTCCAAGCTAACATAGGGC 58.701 52.381 0.56 0.00 0.00 5.19
4283 5525 4.811557 GCTAGTGGTTCCAAGCTAACATAG 59.188 45.833 7.92 1.51 32.18 2.23
4285 5527 3.610911 GCTAGTGGTTCCAAGCTAACAT 58.389 45.455 7.92 0.00 32.18 2.71
4303 5545 9.684448 CAATAGAGAAAGATTCAGATTACGCTA 57.316 33.333 0.00 0.00 0.00 4.26
4306 5548 7.439356 TGGCAATAGAGAAAGATTCAGATTACG 59.561 37.037 0.00 0.00 0.00 3.18
4308 5550 7.935755 CCTGGCAATAGAGAAAGATTCAGATTA 59.064 37.037 0.00 0.00 0.00 1.75
4317 5559 4.640771 ACAACCTGGCAATAGAGAAAGA 57.359 40.909 0.00 0.00 0.00 2.52
4320 5562 3.255642 GCAAACAACCTGGCAATAGAGAA 59.744 43.478 0.00 0.00 0.00 2.87
4322 5564 2.094545 GGCAAACAACCTGGCAATAGAG 60.095 50.000 0.00 0.00 39.10 2.43
4327 5569 1.733402 CTCGGCAAACAACCTGGCAA 61.733 55.000 0.00 0.00 39.23 4.52
4330 5572 1.654220 CACTCGGCAAACAACCTGG 59.346 57.895 0.00 0.00 0.00 4.45
4342 5584 1.722011 ACCTAACGAAATGCACTCGG 58.278 50.000 20.54 8.22 40.64 4.63
4344 5586 5.041940 CCTAGTACCTAACGAAATGCACTC 58.958 45.833 0.00 0.00 0.00 3.51
4349 5591 9.355215 CATATTAGCCTAGTACCTAACGAAATG 57.645 37.037 0.00 0.00 0.00 2.32
4358 5601 5.721960 CCATGGTCATATTAGCCTAGTACCT 59.278 44.000 2.57 0.00 0.00 3.08
4388 5631 8.715191 AATTCTTTGTCAAGTGCATAAAAACA 57.285 26.923 0.00 0.00 0.00 2.83
4395 5638 6.018507 GCAAAAGAATTCTTTGTCAAGTGCAT 60.019 34.615 30.22 14.64 44.69 3.96
4403 5647 7.084486 AGGTAATCGCAAAAGAATTCTTTGTC 58.916 34.615 29.31 22.13 44.69 3.18
4404 5648 6.981722 AGGTAATCGCAAAAGAATTCTTTGT 58.018 32.000 29.31 18.07 44.69 2.83
4408 5652 7.454260 AGAAAGGTAATCGCAAAAGAATTCT 57.546 32.000 0.88 0.88 0.00 2.40
4409 5653 8.427774 CAAAGAAAGGTAATCGCAAAAGAATTC 58.572 33.333 0.00 0.00 0.00 2.17
4412 5656 7.033530 TCAAAGAAAGGTAATCGCAAAAGAA 57.966 32.000 0.00 0.00 0.00 2.52
4418 5662 4.033587 GCGTATCAAAGAAAGGTAATCGCA 59.966 41.667 0.00 0.00 38.85 5.10
4436 5680 2.622436 GAGTGCAGAAAAGGAGCGTAT 58.378 47.619 0.00 0.00 0.00 3.06
4437 5681 1.668919 CGAGTGCAGAAAAGGAGCGTA 60.669 52.381 0.00 0.00 0.00 4.42
4438 5682 0.946221 CGAGTGCAGAAAAGGAGCGT 60.946 55.000 0.00 0.00 0.00 5.07
4439 5683 1.630244 CCGAGTGCAGAAAAGGAGCG 61.630 60.000 0.00 0.00 0.00 5.03
4441 5685 2.166270 GCCGAGTGCAGAAAAGGAG 58.834 57.895 0.00 0.00 40.77 3.69
4492 5739 2.240493 AGTAAGTGTTTGCTGAGCGT 57.760 45.000 0.00 0.00 0.00 5.07
4515 5762 9.121658 GGAGAAAGGAGAAGTTTCTTTTTAGAA 57.878 33.333 0.00 0.00 42.95 2.10
4516 5763 8.495260 AGGAGAAAGGAGAAGTTTCTTTTTAGA 58.505 33.333 0.00 0.00 42.95 2.10
4517 5764 8.684386 AGGAGAAAGGAGAAGTTTCTTTTTAG 57.316 34.615 0.00 0.00 42.95 1.85
4518 5765 9.475620 AAAGGAGAAAGGAGAAGTTTCTTTTTA 57.524 29.630 0.00 0.00 42.95 1.52
4519 5766 7.962995 AAGGAGAAAGGAGAAGTTTCTTTTT 57.037 32.000 0.00 1.40 42.95 1.94
4520 5767 7.962995 AAAGGAGAAAGGAGAAGTTTCTTTT 57.037 32.000 0.00 0.00 42.95 2.27
4521 5768 7.962995 AAAAGGAGAAAGGAGAAGTTTCTTT 57.037 32.000 0.00 0.00 42.95 2.52
4522 5769 7.962995 AAAAAGGAGAAAGGAGAAGTTTCTT 57.037 32.000 0.00 0.00 42.95 2.52
4566 5813 6.872920 AGGAACAGTGCATAAAAGTGAAAAA 58.127 32.000 0.00 0.00 0.00 1.94
4567 5814 6.463995 AGGAACAGTGCATAAAAGTGAAAA 57.536 33.333 0.00 0.00 0.00 2.29
4568 5815 6.463995 AAGGAACAGTGCATAAAAGTGAAA 57.536 33.333 0.00 0.00 0.00 2.69
4569 5816 6.321181 AGAAAGGAACAGTGCATAAAAGTGAA 59.679 34.615 0.00 0.00 0.00 3.18
4570 5817 5.827797 AGAAAGGAACAGTGCATAAAAGTGA 59.172 36.000 0.00 0.00 0.00 3.41
4571 5818 6.076981 AGAAAGGAACAGTGCATAAAAGTG 57.923 37.500 0.00 0.00 0.00 3.16
4572 5819 7.817418 TTAGAAAGGAACAGTGCATAAAAGT 57.183 32.000 0.00 0.00 0.00 2.66
4577 5824 9.905713 AGATTATTTAGAAAGGAACAGTGCATA 57.094 29.630 0.00 0.00 0.00 3.14
4578 5825 8.680903 CAGATTATTTAGAAAGGAACAGTGCAT 58.319 33.333 0.00 0.00 0.00 3.96
4579 5826 7.665559 ACAGATTATTTAGAAAGGAACAGTGCA 59.334 33.333 0.00 0.00 0.00 4.57
4580 5827 8.045176 ACAGATTATTTAGAAAGGAACAGTGC 57.955 34.615 0.00 0.00 0.00 4.40
4596 5843 9.495572 TTTTTGCGGGAAAATAAACAGATTATT 57.504 25.926 8.25 0.00 44.30 1.40
4642 5889 9.645059 GGAAAATAGAGAAGGGAAAAGAAAATG 57.355 33.333 0.00 0.00 0.00 2.32
4643 5890 8.816894 GGGAAAATAGAGAAGGGAAAAGAAAAT 58.183 33.333 0.00 0.00 0.00 1.82
4644 5891 7.234782 GGGGAAAATAGAGAAGGGAAAAGAAAA 59.765 37.037 0.00 0.00 0.00 2.29
4645 5892 6.724441 GGGGAAAATAGAGAAGGGAAAAGAAA 59.276 38.462 0.00 0.00 0.00 2.52
4646 5893 6.046762 AGGGGAAAATAGAGAAGGGAAAAGAA 59.953 38.462 0.00 0.00 0.00 2.52
4647 5894 5.555941 AGGGGAAAATAGAGAAGGGAAAAGA 59.444 40.000 0.00 0.00 0.00 2.52
4648 5895 5.832221 AGGGGAAAATAGAGAAGGGAAAAG 58.168 41.667 0.00 0.00 0.00 2.27
4649 5896 5.555941 AGAGGGGAAAATAGAGAAGGGAAAA 59.444 40.000 0.00 0.00 0.00 2.29
4650 5897 5.108752 AGAGGGGAAAATAGAGAAGGGAAA 58.891 41.667 0.00 0.00 0.00 3.13
4651 5898 4.711055 AGAGGGGAAAATAGAGAAGGGAA 58.289 43.478 0.00 0.00 0.00 3.97
4652 5899 4.369809 AGAGGGGAAAATAGAGAAGGGA 57.630 45.455 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.