AutoCloner

Multiple sequence alignment - TraesCS6D01G321500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G321500	chr6D	100.000	3530	0	0	1	3530	429005664	429009193	0.000000e+00	6519.0
1	TraesCS6D01G321500	chr6D	88.247	1506	154	13	1018	2509	428194529	428196025	0.000000e+00	1779.0
2	TraesCS6D01G321500	chr6D	86.575	1527	177	13	994	2519	428985514	428984015	0.000000e+00	1659.0
3	TraesCS6D01G321500	chr6D	85.533	1023	137	8	1227	2249	428994001	428995012	0.000000e+00	1059.0
4	TraesCS6D01G321500	chr6D	89.417	463	30	4	422	879	469047678	469048126	1.840000e-157	566.0
5	TraesCS6D01G321500	chr6D	88.657	432	27	7	1	425	469046622	469047038	1.130000e-139	507.0
6	TraesCS6D01G321500	chr6D	88.785	214	24	0	649	862	469046845	469046632	2.700000e-66	263.0
7	TraesCS6D01G321500	chr6D	84.979	233	34	1	630	862	429005905	429005674	5.890000e-58	235.0
8	TraesCS6D01G321500	chr6D	85.217	230	33	1	17	245	429006519	429006290	5.890000e-58	235.0
9	TraesCS6D01G321500	chr6D	89.881	168	17	0	2357	2524	428219017	428219184	2.130000e-52	217.0
10	TraesCS6D01G321500	chr6B	94.451	1748	73	11	884	2617	646235811	646237548	0.000000e+00	2669.0
11	TraesCS6D01G321500	chr6B	94.875	800	17	5	2509	3302	646237774	646238555	0.000000e+00	1229.0
12	TraesCS6D01G321500	chr6B	83.710	1326	188	23	1227	2544	646211820	646213125	0.000000e+00	1227.0
13	TraesCS6D01G321500	chr6B	83.827	878	129	9	1746	2614	646136008	646135135	0.000000e+00	822.0
14	TraesCS6D01G321500	chr6B	90.395	354	30	4	994	1345	646137236	646136885	2.480000e-126	462.0
15	TraesCS6D01G321500	chr6B	96.567	233	7	1	3298	3530	646239170	646239401	5.530000e-103	385.0
16	TraesCS6D01G321500	chr6B	79.771	262	49	4	1	261	632784739	632784997	1.670000e-43	187.0
17	TraesCS6D01G321500	chr6B	85.714	112	14	1	3029	3140	355121898	355122007	2.230000e-22	117.0
18	TraesCS6D01G321500	chr6B	85.227	88	11	1	3053	3140	537463678	537463593	4.850000e-14	89.8
19	TraesCS6D01G321500	chr6A	96.782	1243	28	9	1382	2617	574237898	574239135	0.000000e+00	2063.0
20	TraesCS6D01G321500	chr6A	83.487	1411	201	22	1226	2620	559740938	559739544	0.000000e+00	1286.0
21	TraesCS6D01G321500	chr6A	83.548	1398	200	19	1227	2608	574225298	574226681	0.000000e+00	1280.0
22	TraesCS6D01G321500	chr6A	83.548	1398	200	19	1227	2608	574232572	574233955	0.000000e+00	1280.0
23	TraesCS6D01G321500	chr6A	88.251	383	32	9	3139	3516	574240665	574241039	2.500000e-121	446.0
24	TraesCS6D01G321500	chr6A	84.551	356	34	14	2690	3033	574240321	574240667	2.030000e-87	333.0
25	TraesCS6D01G321500	chr6A	92.248	129	10	0	877	1005	574237772	574237900	2.160000e-42	183.0
26	TraesCS6D01G321500	chr5D	88.743	915	49	10	1	879	352816990	352817886	0.000000e+00	1070.0
27	TraesCS6D01G321500	chr5B	84.946	372	45	7	4	364	241164856	241164485	2.000000e-97	366.0
28	TraesCS6D01G321500	chr5B	80.236	339	49	7	544	879	241162863	241162540	4.550000e-59	239.0
29	TraesCS6D01G321500	chr5B	80.723	249	44	4	11	256	241162557	241162804	1.290000e-44	191.0
30	TraesCS6D01G321500	chr3A	82.239	259	39	6	4	258	509425768	509425513	2.130000e-52	217.0
31	TraesCS6D01G321500	chrUn	82.895	228	39	0	652	879	249456571	249456798	4.620000e-49	206.0
32	TraesCS6D01G321500	chrUn	82.895	228	39	0	652	879	283363472	283363699	4.620000e-49	206.0
33	TraesCS6D01G321500	chr7A	81.323	257	37	10	4	254	136463093	136462842	7.730000e-47	198.0
34	TraesCS6D01G321500	chr7A	80.385	260	45	6	4	259	207299553	207299810	3.600000e-45	193.0
35	TraesCS6D01G321500	chr7A	80.172	116	21	2	3030	3145	179398869	179398756	6.280000e-13	86.1
36	TraesCS6D01G321500	chr4B	82.967	182	29	2	634	814	36199141	36198961	2.820000e-36	163.0
37	TraesCS6D01G321500	chr1D	78.088	251	45	5	635	877	415768672	415768424	2.200000e-32	150.0
38	TraesCS6D01G321500	chr3D	86.486	111	12	2	3031	3140	326953422	326953530	6.190000e-23	119.0
39	TraesCS6D01G321500	chr7B	86.667	105	12	1	3030	3134	526846614	526846716	8.010000e-22	115.0
40	TraesCS6D01G321500	chr5A	87.234	94	12	0	786	879	689202672	689202765	1.340000e-19	108.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G321500	chr6D	429005664	429009193	3529	False	6519.000000	6519	100.000000	1	3530	1	chr6D.!!$F4	3529
1	TraesCS6D01G321500	chr6D	428194529	428196025	1496	False	1779.000000	1779	88.247000	1018	2509	1	chr6D.!!$F1	1491
2	TraesCS6D01G321500	chr6D	428984015	428985514	1499	True	1659.000000	1659	86.575000	994	2519	1	chr6D.!!$R1	1525
3	TraesCS6D01G321500	chr6D	428994001	428995012	1011	False	1059.000000	1059	85.533000	1227	2249	1	chr6D.!!$F3	1022
4	TraesCS6D01G321500	chr6D	469046622	469048126	1504	False	536.500000	566	89.037000	1	879	2	chr6D.!!$F5	878
5	TraesCS6D01G321500	chr6D	429005674	429006519	845	True	235.000000	235	85.098000	17	862	2	chr6D.!!$R3	845
6	TraesCS6D01G321500	chr6B	646235811	646239401	3590	False	1427.666667	2669	95.297667	884	3530	3	chr6B.!!$F4	2646
7	TraesCS6D01G321500	chr6B	646211820	646213125	1305	False	1227.000000	1227	83.710000	1227	2544	1	chr6B.!!$F3	1317
8	TraesCS6D01G321500	chr6B	646135135	646137236	2101	True	642.000000	822	87.111000	994	2614	2	chr6B.!!$R2	1620
9	TraesCS6D01G321500	chr6A	559739544	559740938	1394	True	1286.000000	1286	83.487000	1226	2620	1	chr6A.!!$R1	1394
10	TraesCS6D01G321500	chr6A	574225298	574226681	1383	False	1280.000000	1280	83.548000	1227	2608	1	chr6A.!!$F1	1381
11	TraesCS6D01G321500	chr6A	574232572	574241039	8467	False	861.000000	2063	89.076000	877	3516	5	chr6A.!!$F2	2639
12	TraesCS6D01G321500	chr5D	352816990	352817886	896	False	1070.000000	1070	88.743000	1	879	1	chr5D.!!$F1	878
13	TraesCS6D01G321500	chr5B	241162540	241164856	2316	True	302.500000	366	82.591000	4	879	2	chr5B.!!$R1	875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
882	3064	0.033366	AACAGTGATTTTTGCCGCCC	59.967	50.0	0.0	0.0	0.0	6.13	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2542	10537	0.460284	GCCACACGGATACACCAGAG	60.46	60.0	0.0	0.0	38.9	3.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
120	121	6.896021	AGGCGTCACACTATACTATGTAAT	57.104	37.500	0.00	0.00	0.00	1.89
451	1271	1.137282	TGAGTTAGTGTTGCACCACGA	59.863	47.619	8.88	0.12	40.33	4.35
455	1275	2.806244	GTTAGTGTTGCACCACGATCTT	59.194	45.455	8.88	0.00	40.33	2.40
492	1327	7.014326	TCAGCGATTCTACTAATACTTCCACAT	59.986	37.037	0.00	0.00	0.00	3.21
513	1348	1.935300	GCGGACACATCGATATGGACC	60.935	57.143	8.81	9.93	37.43	4.46
541	1376	1.136110	CGGCCAGAAAAACACCAAAGT	59.864	47.619	2.24	0.00	0.00	2.66
592	2772	5.393124	GTGTCAAGCATCGAAATTTCATGA	58.607	37.500	23.35	13.65	0.00	3.07
612	2792	2.240493	ATCCACTATAGTGCAACGCC	57.760	50.000	24.85	0.00	45.86	5.68
613	2793	1.191535	TCCACTATAGTGCAACGCCT	58.808	50.000	24.85	0.00	45.86	5.52
614	2794	2.380941	TCCACTATAGTGCAACGCCTA	58.619	47.619	24.85	2.30	45.86	3.93
615	2795	2.361119	TCCACTATAGTGCAACGCCTAG	59.639	50.000	24.85	9.89	45.86	3.02
616	2796	2.361119	CCACTATAGTGCAACGCCTAGA	59.639	50.000	24.85	0.00	45.86	2.43
617	2797	3.372954	CACTATAGTGCAACGCCTAGAC	58.627	50.000	19.55	0.00	45.86	2.59
618	2798	2.361438	ACTATAGTGCAACGCCTAGACC	59.639	50.000	4.10	0.00	45.86	3.85
619	2799	0.464452	ATAGTGCAACGCCTAGACCC	59.536	55.000	0.00	0.00	45.86	4.46
620	2800	0.613853	TAGTGCAACGCCTAGACCCT	60.614	55.000	0.00	0.00	45.86	4.34
621	2801	1.741770	GTGCAACGCCTAGACCCTG	60.742	63.158	0.00	0.00	0.00	4.45
622	2802	2.125106	GCAACGCCTAGACCCTGG	60.125	66.667	0.00	0.00	0.00	4.45
623	2803	2.584608	CAACGCCTAGACCCTGGG	59.415	66.667	12.28	12.28	35.09	4.45
680	2860	1.069823	CCTATCTCTCAGGCGTTGCAT	59.930	52.381	0.00	0.00	0.00	3.96
706	2887	6.719370	ACTGACTTGGTATTTTTGAGGCAATA	59.281	34.615	0.00	0.00	0.00	1.90
777	2958	2.686915	ACAGTATAGTGTGACGCCTACC	59.313	50.000	12.50	0.00	0.00	3.18
879	3061	3.243035	TGTCAGAACAGTGATTTTTGCCG	60.243	43.478	0.00	0.00	0.00	5.69
880	3062	2.053627	CAGAACAGTGATTTTTGCCGC	58.946	47.619	0.00	0.00	0.00	6.53
881	3063	1.000274	AGAACAGTGATTTTTGCCGCC	60.000	47.619	0.00	0.00	0.00	6.13
882	3064	0.033366	AACAGTGATTTTTGCCGCCC	59.967	50.000	0.00	0.00	0.00	6.13
926	3108	1.423161	GCATATTTGCCTCCCTCCTCT	59.577	52.381	0.00	0.00	43.38	3.69
932	3114	1.760480	GCCTCCCTCCTCTCTGTCC	60.760	68.421	0.00	0.00	0.00	4.02
1016	3198	2.444624	CGATGACGAGGCAACGGTG	61.445	63.158	0.00	0.00	46.39	4.94
1062	3245	2.501610	GTGGCTGAGGGATCCGAC	59.498	66.667	5.45	2.64	0.00	4.79
1064	3247	3.148279	GGCTGAGGGATCCGACGT	61.148	66.667	5.45	0.00	0.00	4.34
1380	3617	4.899239	CGCACGGCAGGGATCCTC	62.899	72.222	12.58	1.55	0.00	3.71
1386	3623	2.060980	GGCAGGGATCCTCGACAGT	61.061	63.158	12.58	0.00	0.00	3.55
1739	9540	1.812686	TTTGACGACTCCACCTCCCG	61.813	60.000	0.00	0.00	0.00	5.14
1840	9816	2.771762	GCCCAGGCCAGATCTCCT	60.772	66.667	5.01	0.00	34.56	3.69
1896	9872	1.003355	CACATTGCTGTCCCTCGGT	60.003	57.895	0.00	0.00	31.62	4.69
2033	10009	4.512484	TGGTTCAATCACATTATCTCGCA	58.488	39.130	0.00	0.00	0.00	5.10
2542	10537	6.001460	TGCTTTATCTAGCTAGAGTCCTCTC	58.999	44.000	26.64	13.34	41.76	3.20
2543	10538	6.183361	TGCTTTATCTAGCTAGAGTCCTCTCT	60.183	42.308	26.64	11.36	44.21	3.10
2544	10539	7.907214	CTTTATCTAGCTAGAGTCCTCTCTC	57.093	44.000	26.64	0.00	46.84	3.20
2545	10540	7.626999	TTTATCTAGCTAGAGTCCTCTCTCT	57.373	40.000	26.64	10.00	46.84	3.10
2546	10541	4.955811	TCTAGCTAGAGTCCTCTCTCTG	57.044	50.000	19.72	0.00	46.84	3.35
2547	10542	3.646162	TCTAGCTAGAGTCCTCTCTCTGG	59.354	52.174	19.72	4.88	46.84	3.86
2571	10576	2.639286	CGTGTGGCTGCCTGTTTC	59.361	61.111	21.03	5.92	0.00	2.78
2583	10590	3.591196	GCCTGTTTCATTTGGCATGTA	57.409	42.857	0.00	0.00	44.34	2.29
2587	10594	4.799949	CCTGTTTCATTTGGCATGTAATCG	59.200	41.667	0.00	0.00	0.00	3.34
2598	10605	3.814842	GGCATGTAATCGATCAACCATGA	59.185	43.478	21.13	2.50	40.57	3.07
2611	10618	3.076621	CAACCATGACAGCAGCTAAAGA	58.923	45.455	0.00	0.00	0.00	2.52
2613	10620	3.754965	ACCATGACAGCAGCTAAAGAAA	58.245	40.909	0.00	0.00	0.00	2.52
2683	11025	6.285790	CATACAAATATGTAGCAAGACGCA	57.714	37.500	0.00	0.00	44.85	5.24
2685	11027	5.818136	ACAAATATGTAGCAAGACGCAAT	57.182	34.783	0.00	0.00	38.23	3.56
2686	11028	5.572211	ACAAATATGTAGCAAGACGCAATG	58.428	37.500	0.00	0.00	38.23	2.82
2688	11030	5.663795	AATATGTAGCAAGACGCAATGAG	57.336	39.130	0.00	0.00	46.13	2.90
3089	12245	5.005971	CAGCTGACATTTTGAACTGTTTTGG	59.994	40.000	8.42	0.00	0.00	3.28
3116	12272	3.244078	TGCCTGAATTGTCTACAACGTCT	60.244	43.478	0.00	0.00	38.86	4.18
3395	13175	5.363939	CAGCTGATTAGTAGAAAGAAGGGG	58.636	45.833	8.42	0.00	0.00	4.79
3426	13206	1.614241	CCGGATGAAGGGAAGACCGT	61.614	60.000	0.00	0.00	46.96	4.83
3480	13260	5.710513	TTTTGCTCTGCTTATTGTGATGT	57.289	34.783	0.00	0.00	0.00	3.06
3495	13275	7.961325	ATTGTGATGTTGGAATGTAAAAACC	57.039	32.000	0.00	0.00	0.00	3.27

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
15	16	4.655440	TTGTGATATTGTTTCGTCCACG	57.345	40.909	0.00	0.00	41.45	4.94
64	65	5.302360	ACGCTACATAAAAAGGTCAGTCAA	58.698	37.500	0.00	0.00	0.00	3.18
74	75	6.864685	CCTATATGTCGGACGCTACATAAAAA	59.135	38.462	3.34	1.13	40.81	1.94
451	1271	3.942829	TCGCTGACTGAATTTGGAAGAT	58.057	40.909	0.00	0.00	0.00	2.40
455	1275	3.942829	AGAATCGCTGACTGAATTTGGA	58.057	40.909	0.00	0.00	0.00	3.53
492	1327	1.036707	TCCATATCGATGTGTCCGCA	58.963	50.000	19.21	0.00	0.00	5.69
513	1348	4.830765	TTTCTGGCCGGCCGATCG	62.831	66.667	39.00	26.18	39.42	3.69
541	1376	3.181471	GCTAGCTAGAGTGGCAAATCAGA	60.181	47.826	25.15	0.00	0.00	3.27
592	2772	2.170607	AGGCGTTGCACTATAGTGGATT	59.829	45.455	29.45	11.14	45.59	3.01
612	2792	1.152735	TCTAGCGCCCAGGGTCTAG	60.153	63.158	21.96	21.96	33.05	2.43
613	2793	1.455217	GTCTAGCGCCCAGGGTCTA	60.455	63.158	7.55	8.29	0.00	2.59
614	2794	2.760385	GTCTAGCGCCCAGGGTCT	60.760	66.667	7.55	7.49	0.00	3.85
615	2795	3.851128	GGTCTAGCGCCCAGGGTC	61.851	72.222	7.55	0.00	0.00	4.46
621	2801	3.617735	GCCTAGGGTCTAGCGCCC	61.618	72.222	11.72	12.65	46.43	6.13
622	2802	3.979739	CGCCTAGGGTCTAGCGCC	61.980	72.222	11.72	0.00	42.31	6.53
625	2805	0.822532	TGTAGCGCCTAGGGTCTAGC	60.823	60.000	11.72	0.00	0.00	3.42
680	2860	5.626142	TGCCTCAAAAATACCAAGTCAGTA	58.374	37.500	0.00	0.00	0.00	2.74
706	2887	1.275291	CTAGACAACGTCACACCCCAT	59.725	52.381	0.00	0.00	34.60	4.00
777	2958	0.248743	TTTCGTGTAGCGCCCGATAG	60.249	55.000	2.29	0.00	41.07	2.08
798	2980	4.167597	TTTTTCACCCGGCTGACC	57.832	55.556	0.00	0.00	0.00	4.02
826	3008	7.429633	ACGAAACAATATCACAAAATGAACCA	58.570	30.769	0.00	0.00	41.93	3.67
943	3125	4.999939	GCAGGTTTGGCGTTGGCG	63.000	66.667	0.00	0.00	41.24	5.69
982	3164	4.373116	CGTAGCGGCCTGGTGTGT	62.373	66.667	0.00	0.00	0.00	3.72
1052	3235	3.200593	CGTCGACGTCGGATCCCT	61.201	66.667	35.05	0.00	40.29	4.20
1062	3245	2.022902	CCGTGAGATCCGTCGACG	59.977	66.667	30.33	30.33	35.88	5.12
1064	3247	1.153025	ATCCCGTGAGATCCGTCGA	60.153	57.895	0.00	0.00	0.00	4.20
1116	3299	1.555741	GCTCGGATGATTCTGCGAGC	61.556	60.000	24.13	24.13	45.58	5.03
1281	3467	4.426313	TCGAGGGAGAGCAGCCGA	62.426	66.667	0.00	0.00	0.00	5.54
1375	3612	1.810532	GGAAGCGACTGTCGAGGAT	59.189	57.895	32.07	14.63	43.74	3.24
1739	9540	1.222936	CAGAGGATGAGTGTGGGCC	59.777	63.158	0.00	0.00	0.00	5.80
1840	9816	2.219080	TGACTGTCGTACATGGGGTA	57.781	50.000	2.98	0.00	0.00	3.69
2530	10525	5.744887	GGATACACCAGAGAGAGGACTCTAG	60.745	52.000	1.10	0.00	44.18	2.43
2531	10526	4.103469	GGATACACCAGAGAGAGGACTCTA	59.897	50.000	1.10	0.00	44.18	2.43
2532	10527	3.117663	GGATACACCAGAGAGAGGACTCT	60.118	52.174	0.60	0.60	46.51	3.24
2533	10528	3.219281	GGATACACCAGAGAGAGGACTC	58.781	54.545	0.00	0.00	39.75	3.36
2534	10529	2.422235	CGGATACACCAGAGAGAGGACT	60.422	54.545	0.00	0.00	38.90	3.85
2535	10530	1.950909	CGGATACACCAGAGAGAGGAC	59.049	57.143	0.00	0.00	38.90	3.85
2536	10531	1.564818	ACGGATACACCAGAGAGAGGA	59.435	52.381	0.00	0.00	38.90	3.71
2537	10532	1.678627	CACGGATACACCAGAGAGAGG	59.321	57.143	0.00	0.00	38.90	3.69
2542	10537	0.460284	GCCACACGGATACACCAGAG	60.460	60.000	0.00	0.00	38.90	3.35
2543	10538	0.902984	AGCCACACGGATACACCAGA	60.903	55.000	0.00	0.00	38.90	3.86
2544	10539	0.740868	CAGCCACACGGATACACCAG	60.741	60.000	0.00	0.00	38.90	4.00
2545	10540	1.295101	CAGCCACACGGATACACCA	59.705	57.895	0.00	0.00	38.90	4.17
2546	10541	2.106683	GCAGCCACACGGATACACC	61.107	63.158	0.00	0.00	0.00	4.16
2547	10542	2.106683	GGCAGCCACACGGATACAC	61.107	63.158	6.55	0.00	0.00	2.90
2571	10576	4.977963	GGTTGATCGATTACATGCCAAATG	59.022	41.667	0.00	0.00	0.00	2.32
2583	10590	2.941064	CTGCTGTCATGGTTGATCGATT	59.059	45.455	0.00	0.00	33.56	3.34
2587	10594	1.747709	AGCTGCTGTCATGGTTGATC	58.252	50.000	0.00	0.00	33.56	2.92
2598	10605	7.041107	TGTTGAAATTTTTCTTTAGCTGCTGT	58.959	30.769	13.43	0.00	38.02	4.40
2611	10618	8.676401	CAAAAGTTGATCCCTGTTGAAATTTTT	58.324	29.630	6.57	0.00	30.11	1.94
2613	10620	7.563906	TCAAAAGTTGATCCCTGTTGAAATTT	58.436	30.769	10.98	0.00	34.11	1.82
2680	11022	3.261580	TGACAGGTTCATACTCATTGCG	58.738	45.455	0.00	0.00	0.00	4.85
2681	11023	5.048782	TGTTTGACAGGTTCATACTCATTGC	60.049	40.000	0.00	0.00	37.16	3.56
2683	11025	6.205464	CAGTGTTTGACAGGTTCATACTCATT	59.795	38.462	0.00	0.00	37.16	2.57
2685	11027	5.056480	CAGTGTTTGACAGGTTCATACTCA	58.944	41.667	0.00	0.00	37.16	3.41
2686	11028	4.083802	GCAGTGTTTGACAGGTTCATACTC	60.084	45.833	0.00	0.00	37.16	2.59
2688	11030	3.815401	AGCAGTGTTTGACAGGTTCATAC	59.185	43.478	0.00	0.00	36.86	2.39
2859	12008	2.289694	ACCTTTTGCTAGACTGTGCGAT	60.290	45.455	0.00	0.00	0.00	4.58
2860	12009	1.070134	ACCTTTTGCTAGACTGTGCGA	59.930	47.619	0.00	0.00	0.00	5.10
3074	12230	1.205893	AGCGCCCAAAACAGTTCAAAA	59.794	42.857	2.29	0.00	0.00	2.44
3075	12231	0.820871	AGCGCCCAAAACAGTTCAAA	59.179	45.000	2.29	0.00	0.00	2.69
3135	12291	5.874810	TGGACACAGATTGCATAAAGTACTC	59.125	40.000	0.00	0.00	0.00	2.59
3238	12398	5.477984	TCATCTCTTAGCCAACAAAAATGCT	59.522	36.000	0.00	0.00	37.84	3.79
3495	13275	7.714703	ACTACTTTATAAAGCCGTCTAGGAAG	58.285	38.462	22.45	8.75	43.43	3.46

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.