Multiple sequence alignment - TraesCS6D01G320500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G320500 chr6D 100.000 6827 0 0 1 6827 428482871 428476045 0.000000e+00 12608
1 TraesCS6D01G320500 chr6D 95.385 130 6 0 6043 6172 354595694 354595823 2.500000e-49 207
2 TraesCS6D01G320500 chr6D 93.000 100 5 2 1212 1310 470635610 470635708 1.980000e-30 145
3 TraesCS6D01G320500 chr6D 89.908 109 10 1 1224 1331 385917027 385916919 9.230000e-29 139
4 TraesCS6D01G320500 chr6A 95.912 5553 174 21 1307 6827 573201301 573195770 0.000000e+00 8948
5 TraesCS6D01G320500 chr6A 90.834 851 41 16 355 1185 573202160 573201327 0.000000e+00 1105
6 TraesCS6D01G320500 chr6B 95.287 1867 74 8 2987 4846 644482002 644480143 0.000000e+00 2948
7 TraesCS6D01G320500 chr6B 97.335 1013 21 5 1993 3001 644483176 644482166 0.000000e+00 1716
8 TraesCS6D01G320500 chr6B 92.343 862 50 10 5188 6041 644479654 644478801 0.000000e+00 1212
9 TraesCS6D01G320500 chr6B 90.429 815 54 11 433 1229 644484694 644483886 0.000000e+00 1051
10 TraesCS6D01G320500 chr6B 92.478 678 41 5 1310 1985 644483888 644483219 0.000000e+00 961
11 TraesCS6D01G320500 chr6B 91.754 667 34 6 6177 6827 644478698 644478037 0.000000e+00 907
12 TraesCS6D01G320500 chr6B 92.517 147 10 1 5029 5174 644480005 644479859 6.940000e-50 209
13 TraesCS6D01G320500 chr6B 87.006 177 15 4 5864 6037 644478870 644478699 6.990000e-45 193
14 TraesCS6D01G320500 chr6B 88.024 167 14 3 433 599 644807281 644807121 6.990000e-45 193
15 TraesCS6D01G320500 chr5B 81.375 349 40 13 2 329 685257833 685257489 1.890000e-65 261
16 TraesCS6D01G320500 chr5B 89.552 134 12 2 6043 6175 695656182 695656050 1.180000e-37 169
17 TraesCS6D01G320500 chr3B 80.000 375 49 13 3 354 207129401 207129030 3.160000e-63 254
18 TraesCS6D01G320500 chr3B 86.486 148 10 1 6035 6172 34644282 34644429 3.300000e-33 154
19 TraesCS6D01G320500 chr7D 79.503 322 51 8 38 351 104899665 104899979 1.490000e-51 215
20 TraesCS6D01G320500 chr7D 76.892 251 41 13 112 351 136598239 136598483 7.190000e-25 126
21 TraesCS6D01G320500 chr7D 87.156 109 12 2 159 265 634655505 634655397 9.300000e-24 122
22 TraesCS6D01G320500 chr2A 78.393 361 48 20 3 354 146347035 146346696 2.500000e-49 207
23 TraesCS6D01G320500 chr2A 88.571 140 14 1 6043 6180 754448141 754448002 1.180000e-37 169
24 TraesCS6D01G320500 chr4A 82.101 257 31 8 88 334 625541747 625541998 8.980000e-49 206
25 TraesCS6D01G320500 chr4A 92.593 135 10 0 6038 6172 668307498 668307632 1.940000e-45 195
26 TraesCS6D01G320500 chr4A 92.233 103 5 2 1226 1327 609073906 609073806 7.140000e-30 143
27 TraesCS6D01G320500 chr1A 87.363 182 18 5 88 266 57133417 57133596 3.230000e-48 204
28 TraesCS6D01G320500 chr1A 93.750 96 6 0 1222 1317 498400934 498400839 1.980000e-30 145
29 TraesCS6D01G320500 chr2D 78.116 361 48 22 3 354 154611876 154612214 4.180000e-47 200
30 TraesCS6D01G320500 chr2D 88.618 123 9 5 1212 1332 192312606 192312725 1.980000e-30 145
31 TraesCS6D01G320500 chr4B 92.754 138 9 1 6043 6179 510830266 510830403 1.500000e-46 198
32 TraesCS6D01G320500 chr7B 92.481 133 10 0 6043 6175 606421783 606421915 2.510000e-44 191
33 TraesCS6D01G320500 chr1D 88.112 143 7 1 6043 6175 212494666 212494808 1.970000e-35 161
34 TraesCS6D01G320500 chr1D 93.069 101 5 2 1224 1323 170408256 170408355 5.520000e-31 147
35 TraesCS6D01G320500 chr5A 86.364 154 10 3 6043 6186 600611330 600611482 2.550000e-34 158
36 TraesCS6D01G320500 chr2B 86.667 150 9 2 6043 6181 500456540 500456391 9.170000e-34 156
37 TraesCS6D01G320500 chr4D 93.939 99 4 2 1214 1310 450537103 450537201 1.530000e-31 148
38 TraesCS6D01G320500 chr4D 89.565 115 9 2 1208 1319 478669033 478668919 7.140000e-30 143
39 TraesCS6D01G320500 chr1B 90.000 110 8 3 1215 1323 371456329 371456436 9.230000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G320500 chr6D 428476045 428482871 6826 True 12608.000 12608 100.000000 1 6827 1 chr6D.!!$R2 6826
1 TraesCS6D01G320500 chr6A 573195770 573202160 6390 True 5026.500 8948 93.373000 355 6827 2 chr6A.!!$R1 6472
2 TraesCS6D01G320500 chr6B 644478037 644484694 6657 True 1149.625 2948 92.393625 433 6827 8 chr6B.!!$R2 6394

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
45 46 0.031585 CGTGGAGAAGTGACCAACGA 59.968 55.000 0.00 0.0 37.94 3.85 F
319 320 0.036164 AAACACAGTAGATGCGGGCA 59.964 50.000 0.00 0.0 0.00 5.36 F
322 323 0.108186 CACAGTAGATGCGGGCAGAA 60.108 55.000 0.00 0.0 0.00 3.02 F
341 342 0.108615 AAGATCGGTCGGCTGAACAG 60.109 55.000 11.99 3.7 33.10 3.16 F
343 344 0.108804 GATCGGTCGGCTGAACAGAA 60.109 55.000 11.99 0.0 33.10 3.02 F
345 346 0.319555 TCGGTCGGCTGAACAGAAAG 60.320 55.000 11.99 0.0 0.00 2.62 F
346 347 0.319555 CGGTCGGCTGAACAGAAAGA 60.320 55.000 11.99 0.0 0.00 2.52 F
1056 1095 0.942962 GCTCGAAGCATGGGATGAAG 59.057 55.000 0.00 0.0 41.89 3.02 F
2435 2512 1.137675 GCATTCCTCCTTTTCATGGGC 59.862 52.381 0.00 0.0 0.00 5.36 F
2452 2529 0.105039 GGCTAGCTAATCTGCCGTGT 59.895 55.000 15.72 0.0 35.79 4.49 F
4384 4649 0.179235 CCAAACGTATGCGGTGTTCG 60.179 55.000 8.39 0.0 43.45 3.95 F
4867 5132 0.391661 AGATGCCGCGTTTCTGTGAT 60.392 50.000 4.92 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1134 1173 1.072331 GGACCTGAAAGAACAGCCTCA 59.928 52.381 0.00 0.00 36.67 3.86 R
1348 1388 2.014010 AGCAATCCCTTCCTGCAAAA 57.986 45.000 0.00 0.00 38.58 2.44 R
1510 1550 6.230472 TGTATGTACATGCACTCTTTCAAGT 58.770 36.000 21.01 0.00 0.00 3.16 R
1674 1715 6.479990 TCTCCTGTAAATTCAATATGCAGACG 59.520 38.462 0.00 0.00 0.00 4.18 R
1844 1885 6.603599 GGACAGCTAAAAGGAACTCCATAAAT 59.396 38.462 0.00 0.00 38.49 1.40 R
2435 2512 3.521560 TGAAACACGGCAGATTAGCTAG 58.478 45.455 0.00 0.00 34.17 3.42 R
2448 2525 3.670055 GGTCTGCATTTCATTGAAACACG 59.330 43.478 13.80 7.21 34.23 4.49 R
2452 2529 5.012239 AGCTAGGTCTGCATTTCATTGAAA 58.988 37.500 13.88 13.88 35.94 2.69 R
4384 4649 1.285023 CCAAGACTTGCAGCACAGC 59.715 57.895 9.85 0.00 0.00 4.40 R
4492 4757 1.337167 TGAGCTGTCACACGAATGAGG 60.337 52.381 0.00 0.00 0.00 3.86 R
5518 6005 0.171679 TCGGTTTTCGCGAGCTCATA 59.828 50.000 15.40 0.00 39.05 2.15 R
6440 7043 0.824759 GTAGGTGGTAGCCCTGACAG 59.175 60.000 11.01 0.00 33.35 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.477975 CGGCTCGGACGAGGTCAC 62.478 72.222 21.57 6.24 42.19 3.67
18 19 4.131088 GGCTCGGACGAGGTCACC 62.131 72.222 21.57 11.27 42.19 4.02
19 20 4.477975 GCTCGGACGAGGTCACCG 62.478 72.222 21.57 0.00 46.71 4.94
20 21 4.477975 CTCGGACGAGGTCACCGC 62.478 72.222 13.59 0.00 45.25 5.68
38 39 4.373116 GCGGCCGTGGAGAAGTGA 62.373 66.667 28.70 0.00 0.00 3.41
39 40 2.432628 CGGCCGTGGAGAAGTGAC 60.433 66.667 19.50 0.00 0.00 3.67
40 41 2.047179 GGCCGTGGAGAAGTGACC 60.047 66.667 0.00 0.00 0.00 4.02
41 42 2.741092 GCCGTGGAGAAGTGACCA 59.259 61.111 0.00 0.00 0.00 4.02
42 43 1.070786 GCCGTGGAGAAGTGACCAA 59.929 57.895 0.00 0.00 37.94 3.67
43 44 1.228657 GCCGTGGAGAAGTGACCAAC 61.229 60.000 0.00 0.00 37.94 3.77
44 45 0.944311 CCGTGGAGAAGTGACCAACG 60.944 60.000 0.00 0.00 37.94 4.10
45 46 0.031585 CGTGGAGAAGTGACCAACGA 59.968 55.000 0.00 0.00 37.94 3.85
46 47 1.499049 GTGGAGAAGTGACCAACGAC 58.501 55.000 0.00 0.00 37.94 4.34
47 48 0.391597 TGGAGAAGTGACCAACGACC 59.608 55.000 0.00 0.00 32.93 4.79
48 49 0.666577 GGAGAAGTGACCAACGACCG 60.667 60.000 0.00 0.00 0.00 4.79
49 50 0.313043 GAGAAGTGACCAACGACCGA 59.687 55.000 0.00 0.00 0.00 4.69
50 51 0.314302 AGAAGTGACCAACGACCGAG 59.686 55.000 0.00 0.00 0.00 4.63
51 52 0.666577 GAAGTGACCAACGACCGAGG 60.667 60.000 0.00 0.41 0.00 4.63
52 53 1.111116 AAGTGACCAACGACCGAGGA 61.111 55.000 11.21 0.00 0.00 3.71
53 54 1.080705 GTGACCAACGACCGAGGAG 60.081 63.158 11.21 0.00 0.00 3.69
54 55 1.228337 TGACCAACGACCGAGGAGA 60.228 57.895 11.21 0.00 0.00 3.71
55 56 0.611062 TGACCAACGACCGAGGAGAT 60.611 55.000 11.21 0.00 0.00 2.75
56 57 0.179134 GACCAACGACCGAGGAGATG 60.179 60.000 11.21 0.00 0.00 2.90
57 58 1.141881 CCAACGACCGAGGAGATGG 59.858 63.158 0.00 0.56 0.00 3.51
58 59 1.320344 CCAACGACCGAGGAGATGGA 61.320 60.000 10.93 0.00 0.00 3.41
59 60 0.101399 CAACGACCGAGGAGATGGAG 59.899 60.000 0.00 0.00 0.00 3.86
60 61 0.323542 AACGACCGAGGAGATGGAGT 60.324 55.000 0.00 0.00 0.00 3.85
61 62 0.545171 ACGACCGAGGAGATGGAGTA 59.455 55.000 0.00 0.00 0.00 2.59
62 63 1.143277 ACGACCGAGGAGATGGAGTAT 59.857 52.381 0.00 0.00 0.00 2.12
63 64 1.537638 CGACCGAGGAGATGGAGTATG 59.462 57.143 0.00 0.00 0.00 2.39
64 65 2.810767 CGACCGAGGAGATGGAGTATGA 60.811 54.545 0.00 0.00 0.00 2.15
65 66 2.817258 GACCGAGGAGATGGAGTATGAG 59.183 54.545 0.00 0.00 0.00 2.90
66 67 2.443632 ACCGAGGAGATGGAGTATGAGA 59.556 50.000 0.00 0.00 0.00 3.27
67 68 3.081061 CCGAGGAGATGGAGTATGAGAG 58.919 54.545 0.00 0.00 0.00 3.20
68 69 3.497763 CCGAGGAGATGGAGTATGAGAGT 60.498 52.174 0.00 0.00 0.00 3.24
69 70 3.501828 CGAGGAGATGGAGTATGAGAGTG 59.498 52.174 0.00 0.00 0.00 3.51
70 71 3.826157 GAGGAGATGGAGTATGAGAGTGG 59.174 52.174 0.00 0.00 0.00 4.00
71 72 3.206412 AGGAGATGGAGTATGAGAGTGGT 59.794 47.826 0.00 0.00 0.00 4.16
72 73 3.964031 GGAGATGGAGTATGAGAGTGGTT 59.036 47.826 0.00 0.00 0.00 3.67
73 74 4.038642 GGAGATGGAGTATGAGAGTGGTTC 59.961 50.000 0.00 0.00 0.00 3.62
74 75 4.614475 AGATGGAGTATGAGAGTGGTTCA 58.386 43.478 0.00 0.00 0.00 3.18
75 76 4.648762 AGATGGAGTATGAGAGTGGTTCAG 59.351 45.833 0.00 0.00 0.00 3.02
76 77 3.099905 TGGAGTATGAGAGTGGTTCAGG 58.900 50.000 0.00 0.00 0.00 3.86
77 78 2.159028 GGAGTATGAGAGTGGTTCAGGC 60.159 54.545 0.00 0.00 0.00 4.85
78 79 1.834263 AGTATGAGAGTGGTTCAGGCC 59.166 52.381 0.00 0.00 0.00 5.19
79 80 1.134371 GTATGAGAGTGGTTCAGGCCC 60.134 57.143 0.00 0.00 0.00 5.80
80 81 1.903877 ATGAGAGTGGTTCAGGCCCG 61.904 60.000 0.00 0.00 0.00 6.13
81 82 2.526873 AGAGTGGTTCAGGCCCGT 60.527 61.111 0.00 0.00 0.00 5.28
82 83 2.047179 GAGTGGTTCAGGCCCGTC 60.047 66.667 0.00 0.00 0.00 4.79
83 84 3.934391 GAGTGGTTCAGGCCCGTCG 62.934 68.421 0.00 0.00 0.00 5.12
84 85 3.998672 GTGGTTCAGGCCCGTCGA 61.999 66.667 0.00 0.00 0.00 4.20
85 86 3.000819 TGGTTCAGGCCCGTCGAT 61.001 61.111 0.00 0.00 0.00 3.59
86 87 2.511600 GGTTCAGGCCCGTCGATG 60.512 66.667 0.00 0.00 0.00 3.84
87 88 2.511600 GTTCAGGCCCGTCGATGG 60.512 66.667 17.27 17.27 0.00 3.51
88 89 2.682136 TTCAGGCCCGTCGATGGA 60.682 61.111 25.65 1.00 0.00 3.41
89 90 2.721167 TTCAGGCCCGTCGATGGAG 61.721 63.158 25.65 15.53 0.00 3.86
90 91 4.227134 CAGGCCCGTCGATGGAGG 62.227 72.222 25.65 10.36 0.00 4.30
91 92 4.458829 AGGCCCGTCGATGGAGGA 62.459 66.667 25.65 0.00 0.00 3.71
92 93 3.917760 GGCCCGTCGATGGAGGAG 61.918 72.222 25.65 9.23 0.00 3.69
93 94 2.833582 GCCCGTCGATGGAGGAGA 60.834 66.667 25.65 0.00 0.00 3.71
94 95 2.851071 GCCCGTCGATGGAGGAGAG 61.851 68.421 25.65 8.09 0.00 3.20
95 96 1.152943 CCCGTCGATGGAGGAGAGA 60.153 63.158 25.65 0.00 0.00 3.10
96 97 1.448922 CCCGTCGATGGAGGAGAGAC 61.449 65.000 25.65 0.00 0.00 3.36
97 98 1.644372 CGTCGATGGAGGAGAGACG 59.356 63.158 0.00 1.99 46.32 4.18
98 99 2.026522 GTCGATGGAGGAGAGACGG 58.973 63.158 0.00 0.00 0.00 4.79
99 100 1.152943 TCGATGGAGGAGAGACGGG 60.153 63.158 0.00 0.00 0.00 5.28
100 101 1.152943 CGATGGAGGAGAGACGGGA 60.153 63.158 0.00 0.00 0.00 5.14
101 102 1.169661 CGATGGAGGAGAGACGGGAG 61.170 65.000 0.00 0.00 0.00 4.30
112 113 2.579201 ACGGGAGTGCCGATGAAG 59.421 61.111 31.11 0.00 44.82 3.02
113 114 2.202932 CGGGAGTGCCGATGAAGG 60.203 66.667 19.68 0.00 33.83 3.46
114 115 2.721167 CGGGAGTGCCGATGAAGGA 61.721 63.158 19.68 0.00 33.83 3.36
115 116 1.144936 GGGAGTGCCGATGAAGGAG 59.855 63.158 0.00 0.00 33.83 3.69
116 117 1.144936 GGAGTGCCGATGAAGGAGG 59.855 63.158 0.00 0.00 0.00 4.30
117 118 1.330655 GGAGTGCCGATGAAGGAGGA 61.331 60.000 0.00 0.00 0.00 3.71
118 119 0.103937 GAGTGCCGATGAAGGAGGAG 59.896 60.000 0.00 0.00 0.00 3.69
119 120 0.324738 AGTGCCGATGAAGGAGGAGA 60.325 55.000 0.00 0.00 0.00 3.71
120 121 0.103937 GTGCCGATGAAGGAGGAGAG 59.896 60.000 0.00 0.00 0.00 3.20
121 122 1.068921 GCCGATGAAGGAGGAGAGC 59.931 63.158 0.00 0.00 0.00 4.09
122 123 1.680522 GCCGATGAAGGAGGAGAGCA 61.681 60.000 0.00 0.00 0.00 4.26
123 124 1.047002 CCGATGAAGGAGGAGAGCAT 58.953 55.000 0.00 0.00 0.00 3.79
124 125 1.270199 CCGATGAAGGAGGAGAGCATG 60.270 57.143 0.00 0.00 0.00 4.06
125 126 1.873069 CGATGAAGGAGGAGAGCATGC 60.873 57.143 10.51 10.51 0.00 4.06
126 127 1.417145 GATGAAGGAGGAGAGCATGCT 59.583 52.381 22.92 22.92 0.00 3.79
127 128 0.829333 TGAAGGAGGAGAGCATGCTC 59.171 55.000 35.57 35.57 45.25 4.26
128 129 0.249405 GAAGGAGGAGAGCATGCTCG 60.249 60.000 35.50 0.00 46.85 5.03
129 130 2.280052 GGAGGAGAGCATGCTCGC 60.280 66.667 35.12 35.12 46.85 5.03
133 134 2.894387 GAGAGCATGCTCGCCCAC 60.894 66.667 35.50 22.89 46.90 4.61
134 135 4.827087 AGAGCATGCTCGCCCACG 62.827 66.667 35.50 0.00 46.90 4.94
154 155 3.057337 GGCACCACCGTGTCTAGT 58.943 61.111 0.00 0.00 41.62 2.57
155 156 2.269978 GGCACCACCGTGTCTAGTA 58.730 57.895 0.00 0.00 41.62 1.82
156 157 0.172803 GGCACCACCGTGTCTAGTAG 59.827 60.000 0.00 0.00 41.62 2.57
157 158 0.458025 GCACCACCGTGTCTAGTAGC 60.458 60.000 0.00 0.00 42.39 3.58
158 159 0.179171 CACCACCGTGTCTAGTAGCG 60.179 60.000 0.00 0.00 35.10 4.26
159 160 1.226603 CCACCGTGTCTAGTAGCGC 60.227 63.158 0.00 0.00 0.00 5.92
160 161 1.582937 CACCGTGTCTAGTAGCGCG 60.583 63.158 0.00 0.00 38.21 6.86
161 162 2.651232 CCGTGTCTAGTAGCGCGC 60.651 66.667 26.66 26.66 37.30 6.86
162 163 3.011789 CGTGTCTAGTAGCGCGCG 61.012 66.667 28.44 28.44 0.00 6.86
163 164 2.099831 GTGTCTAGTAGCGCGCGT 59.900 61.111 32.35 20.00 0.00 6.01
164 165 2.099638 TGTCTAGTAGCGCGCGTG 59.900 61.111 32.35 16.86 0.00 5.34
165 166 3.313257 GTCTAGTAGCGCGCGTGC 61.313 66.667 35.79 35.79 37.91 5.34
166 167 4.547905 TCTAGTAGCGCGCGTGCC 62.548 66.667 38.23 25.07 38.08 5.01
167 168 4.554363 CTAGTAGCGCGCGTGCCT 62.554 66.667 38.23 30.05 38.08 4.75
168 169 3.177272 CTAGTAGCGCGCGTGCCTA 62.177 63.158 38.23 29.59 38.08 3.93
169 170 3.177272 TAGTAGCGCGCGTGCCTAG 62.177 63.158 38.23 9.97 38.08 3.02
170 171 4.547905 GTAGCGCGCGTGCCTAGA 62.548 66.667 38.23 20.18 38.08 2.43
171 172 4.251843 TAGCGCGCGTGCCTAGAG 62.252 66.667 38.23 1.41 38.08 2.43
176 177 3.812019 CGCGTGCCTAGAGGTCGT 61.812 66.667 0.00 0.00 37.15 4.34
177 178 2.202623 GCGTGCCTAGAGGTCGTG 60.203 66.667 13.60 0.00 37.15 4.35
178 179 2.490217 CGTGCCTAGAGGTCGTGG 59.510 66.667 0.00 0.00 37.57 4.94
179 180 2.893398 GTGCCTAGAGGTCGTGGG 59.107 66.667 0.00 0.00 37.57 4.61
180 181 1.681327 GTGCCTAGAGGTCGTGGGA 60.681 63.158 0.00 0.00 37.57 4.37
181 182 1.043673 GTGCCTAGAGGTCGTGGGAT 61.044 60.000 0.00 0.00 37.57 3.85
182 183 0.755698 TGCCTAGAGGTCGTGGGATC 60.756 60.000 0.00 0.00 37.57 3.36
183 184 1.465200 GCCTAGAGGTCGTGGGATCC 61.465 65.000 1.92 1.92 37.57 3.36
184 185 0.106167 CCTAGAGGTCGTGGGATCCA 60.106 60.000 15.23 0.00 0.00 3.41
185 186 1.323412 CTAGAGGTCGTGGGATCCAG 58.677 60.000 15.23 4.35 32.34 3.86
186 187 0.924090 TAGAGGTCGTGGGATCCAGA 59.076 55.000 15.23 6.90 32.34 3.86
187 188 0.263172 AGAGGTCGTGGGATCCAGAT 59.737 55.000 15.23 0.00 32.34 2.90
188 189 0.676736 GAGGTCGTGGGATCCAGATC 59.323 60.000 15.23 10.00 32.34 2.75
189 190 0.263172 AGGTCGTGGGATCCAGATCT 59.737 55.000 15.23 12.18 37.92 2.75
190 191 1.123928 GGTCGTGGGATCCAGATCTT 58.876 55.000 15.23 0.00 37.92 2.40
191 192 1.202580 GGTCGTGGGATCCAGATCTTG 60.203 57.143 15.23 0.00 37.92 3.02
192 193 0.465705 TCGTGGGATCCAGATCTTGC 59.534 55.000 15.23 0.00 37.92 4.01
193 194 0.178767 CGTGGGATCCAGATCTTGCA 59.821 55.000 15.23 0.00 37.92 4.08
194 195 1.407299 CGTGGGATCCAGATCTTGCAA 60.407 52.381 15.23 0.00 37.92 4.08
195 196 2.019984 GTGGGATCCAGATCTTGCAAC 58.980 52.381 15.23 0.00 37.92 4.17
196 197 1.634973 TGGGATCCAGATCTTGCAACA 59.365 47.619 15.23 0.00 37.92 3.33
197 198 2.041485 TGGGATCCAGATCTTGCAACAA 59.959 45.455 15.23 0.00 37.92 2.83
198 199 2.686915 GGGATCCAGATCTTGCAACAAG 59.313 50.000 15.23 0.81 37.92 3.16
199 200 2.098770 GGATCCAGATCTTGCAACAAGC 59.901 50.000 6.95 0.00 39.73 4.01
200 201 2.574006 TCCAGATCTTGCAACAAGCT 57.426 45.000 0.00 0.00 45.94 3.74
201 202 3.701205 TCCAGATCTTGCAACAAGCTA 57.299 42.857 0.00 0.00 45.94 3.32
202 203 3.603532 TCCAGATCTTGCAACAAGCTAG 58.396 45.455 0.00 0.00 45.74 3.42
203 204 3.008375 TCCAGATCTTGCAACAAGCTAGT 59.992 43.478 0.00 0.00 44.84 2.57
204 205 3.755378 CCAGATCTTGCAACAAGCTAGTT 59.245 43.478 0.00 0.00 44.84 2.24
205 206 9.473878 GATCCAGATCTTGCAACAAGCTAGTTG 62.474 44.444 0.00 2.65 44.84 3.16
213 214 1.875963 CAAGCTAGTTGTTGCGGGG 59.124 57.895 0.00 0.00 0.00 5.73
214 215 1.971695 AAGCTAGTTGTTGCGGGGC 60.972 57.895 0.00 0.00 0.00 5.80
215 216 3.799755 GCTAGTTGTTGCGGGGCG 61.800 66.667 0.00 0.00 0.00 6.13
216 217 2.047655 CTAGTTGTTGCGGGGCGA 60.048 61.111 0.00 0.00 0.00 5.54
217 218 1.669760 CTAGTTGTTGCGGGGCGAA 60.670 57.895 0.00 0.00 0.00 4.70
218 219 1.227883 TAGTTGTTGCGGGGCGAAA 60.228 52.632 0.00 0.00 0.00 3.46
219 220 0.818445 TAGTTGTTGCGGGGCGAAAA 60.818 50.000 0.00 0.00 0.00 2.29
220 221 1.006688 GTTGTTGCGGGGCGAAAAT 60.007 52.632 0.00 0.00 0.00 1.82
221 222 0.598942 GTTGTTGCGGGGCGAAAATT 60.599 50.000 0.00 0.00 0.00 1.82
222 223 0.598680 TTGTTGCGGGGCGAAAATTG 60.599 50.000 0.00 0.00 0.00 2.32
223 224 2.048690 TTGCGGGGCGAAAATTGC 60.049 55.556 0.00 0.00 0.00 3.56
224 225 2.861101 TTGCGGGGCGAAAATTGCA 61.861 52.632 0.00 0.00 0.00 4.08
225 226 2.048690 GCGGGGCGAAAATTGCAA 60.049 55.556 0.00 0.00 0.00 4.08
226 227 2.379634 GCGGGGCGAAAATTGCAAC 61.380 57.895 0.00 0.00 0.00 4.17
227 228 1.006805 CGGGGCGAAAATTGCAACA 60.007 52.632 0.00 0.00 0.00 3.33
228 229 0.598680 CGGGGCGAAAATTGCAACAA 60.599 50.000 0.00 0.00 0.00 2.83
229 230 1.807139 GGGGCGAAAATTGCAACAAT 58.193 45.000 0.00 0.00 0.00 2.71
230 231 1.464219 GGGGCGAAAATTGCAACAATG 59.536 47.619 0.00 0.00 0.00 2.82
231 232 1.464219 GGGCGAAAATTGCAACAATGG 59.536 47.619 0.00 0.00 0.00 3.16
232 233 2.142319 GGCGAAAATTGCAACAATGGT 58.858 42.857 0.00 0.00 0.00 3.55
233 234 2.157474 GGCGAAAATTGCAACAATGGTC 59.843 45.455 0.00 0.00 0.00 4.02
234 235 2.157474 GCGAAAATTGCAACAATGGTCC 59.843 45.455 0.00 0.00 0.00 4.46
235 236 3.652274 CGAAAATTGCAACAATGGTCCT 58.348 40.909 0.00 0.00 0.00 3.85
236 237 3.429543 CGAAAATTGCAACAATGGTCCTG 59.570 43.478 0.00 0.00 0.00 3.86
237 238 4.379652 GAAAATTGCAACAATGGTCCTGT 58.620 39.130 0.00 0.00 0.00 4.00
238 239 4.420522 AAATTGCAACAATGGTCCTGTT 57.579 36.364 0.00 0.00 37.49 3.16
242 243 2.886862 CAACAATGGTCCTGTTGCAA 57.113 45.000 10.20 0.00 45.07 4.08
243 244 3.176552 CAACAATGGTCCTGTTGCAAA 57.823 42.857 0.00 0.00 45.07 3.68
244 245 3.125316 CAACAATGGTCCTGTTGCAAAG 58.875 45.455 0.00 0.97 45.07 2.77
245 246 1.069049 ACAATGGTCCTGTTGCAAAGC 59.931 47.619 0.00 0.00 0.00 3.51
246 247 1.342174 CAATGGTCCTGTTGCAAAGCT 59.658 47.619 0.00 0.00 0.00 3.74
247 248 2.557924 CAATGGTCCTGTTGCAAAGCTA 59.442 45.455 0.00 0.00 0.00 3.32
248 249 2.356665 TGGTCCTGTTGCAAAGCTAA 57.643 45.000 0.00 0.00 0.00 3.09
249 250 2.660572 TGGTCCTGTTGCAAAGCTAAA 58.339 42.857 0.00 0.00 0.00 1.85
250 251 2.360801 TGGTCCTGTTGCAAAGCTAAAC 59.639 45.455 0.00 0.00 0.00 2.01
251 252 2.623416 GGTCCTGTTGCAAAGCTAAACT 59.377 45.455 0.00 0.00 0.00 2.66
252 253 3.550842 GGTCCTGTTGCAAAGCTAAACTG 60.551 47.826 0.00 0.00 0.00 3.16
253 254 3.066760 GTCCTGTTGCAAAGCTAAACTGT 59.933 43.478 0.00 0.00 0.00 3.55
254 255 3.066621 TCCTGTTGCAAAGCTAAACTGTG 59.933 43.478 0.00 0.00 36.60 3.66
255 256 3.066621 CCTGTTGCAAAGCTAAACTGTGA 59.933 43.478 0.00 0.00 35.35 3.58
256 257 4.439974 CCTGTTGCAAAGCTAAACTGTGAA 60.440 41.667 0.00 0.00 35.35 3.18
257 258 5.065704 TGTTGCAAAGCTAAACTGTGAAA 57.934 34.783 0.00 0.00 35.35 2.69
258 259 5.473931 TGTTGCAAAGCTAAACTGTGAAAA 58.526 33.333 0.00 0.00 32.46 2.29
259 260 5.928839 TGTTGCAAAGCTAAACTGTGAAAAA 59.071 32.000 0.00 0.00 32.46 1.94
298 299 1.970092 AAAAACCATCCGAACGGTCA 58.030 45.000 12.93 0.00 33.17 4.02
299 300 2.194201 AAAACCATCCGAACGGTCAT 57.806 45.000 12.93 0.00 33.17 3.06
300 301 3.337694 AAAACCATCCGAACGGTCATA 57.662 42.857 12.93 0.00 33.17 2.15
301 302 3.337694 AAACCATCCGAACGGTCATAA 57.662 42.857 12.93 0.00 33.17 1.90
302 303 3.337694 AACCATCCGAACGGTCATAAA 57.662 42.857 12.93 0.00 33.17 1.40
303 304 2.624636 ACCATCCGAACGGTCATAAAC 58.375 47.619 12.93 0.00 36.47 2.01
304 305 2.027929 ACCATCCGAACGGTCATAAACA 60.028 45.455 12.93 0.00 36.47 2.83
305 306 2.350498 CCATCCGAACGGTCATAAACAC 59.650 50.000 12.93 0.00 36.47 3.32
306 307 2.816204 TCCGAACGGTCATAAACACA 57.184 45.000 12.93 0.00 36.47 3.72
307 308 2.679450 TCCGAACGGTCATAAACACAG 58.321 47.619 12.93 0.00 36.47 3.66
308 309 2.036217 TCCGAACGGTCATAAACACAGT 59.964 45.455 12.93 0.00 36.47 3.55
309 310 3.255395 TCCGAACGGTCATAAACACAGTA 59.745 43.478 12.93 0.00 36.47 2.74
310 311 3.611113 CCGAACGGTCATAAACACAGTAG 59.389 47.826 0.00 0.00 0.00 2.57
311 312 4.478699 CGAACGGTCATAAACACAGTAGA 58.521 43.478 0.00 0.00 0.00 2.59
312 313 5.100259 CGAACGGTCATAAACACAGTAGAT 58.900 41.667 0.00 0.00 0.00 1.98
313 314 5.004440 CGAACGGTCATAAACACAGTAGATG 59.996 44.000 0.00 0.00 0.00 2.90
314 315 4.181578 ACGGTCATAAACACAGTAGATGC 58.818 43.478 0.00 0.00 0.00 3.91
315 316 3.242944 CGGTCATAAACACAGTAGATGCG 59.757 47.826 0.00 0.00 0.00 4.73
316 317 3.555956 GGTCATAAACACAGTAGATGCGG 59.444 47.826 0.00 0.00 0.00 5.69
317 318 3.555956 GTCATAAACACAGTAGATGCGGG 59.444 47.826 0.00 0.00 0.00 6.13
318 319 2.018542 TAAACACAGTAGATGCGGGC 57.981 50.000 0.00 0.00 0.00 6.13
319 320 0.036164 AAACACAGTAGATGCGGGCA 59.964 50.000 0.00 0.00 0.00 5.36
320 321 0.391661 AACACAGTAGATGCGGGCAG 60.392 55.000 0.00 0.00 0.00 4.85
321 322 1.257750 ACACAGTAGATGCGGGCAGA 61.258 55.000 0.00 0.00 0.00 4.26
322 323 0.108186 CACAGTAGATGCGGGCAGAA 60.108 55.000 0.00 0.00 0.00 3.02
323 324 0.613260 ACAGTAGATGCGGGCAGAAA 59.387 50.000 0.00 0.00 0.00 2.52
324 325 1.293924 CAGTAGATGCGGGCAGAAAG 58.706 55.000 0.00 0.00 0.00 2.62
325 326 1.134699 CAGTAGATGCGGGCAGAAAGA 60.135 52.381 0.00 0.00 0.00 2.52
326 327 1.765314 AGTAGATGCGGGCAGAAAGAT 59.235 47.619 0.00 0.00 0.00 2.40
327 328 2.139118 GTAGATGCGGGCAGAAAGATC 58.861 52.381 0.00 0.00 0.00 2.75
328 329 0.531532 AGATGCGGGCAGAAAGATCG 60.532 55.000 0.00 0.00 0.00 3.69
329 330 1.502163 GATGCGGGCAGAAAGATCGG 61.502 60.000 0.00 0.00 0.00 4.18
330 331 2.125106 GCGGGCAGAAAGATCGGT 60.125 61.111 0.00 0.00 0.00 4.69
331 332 2.174319 GCGGGCAGAAAGATCGGTC 61.174 63.158 0.00 0.00 0.00 4.79
332 333 1.878522 CGGGCAGAAAGATCGGTCG 60.879 63.158 0.00 0.00 0.00 4.79
333 334 1.521681 GGGCAGAAAGATCGGTCGG 60.522 63.158 0.00 0.00 0.00 4.79
334 335 2.174319 GGCAGAAAGATCGGTCGGC 61.174 63.158 12.93 12.93 34.65 5.54
335 336 1.153549 GCAGAAAGATCGGTCGGCT 60.154 57.895 13.70 0.00 32.94 5.52
336 337 1.424493 GCAGAAAGATCGGTCGGCTG 61.424 60.000 13.70 10.01 32.94 4.85
337 338 0.173481 CAGAAAGATCGGTCGGCTGA 59.827 55.000 0.00 0.00 0.00 4.26
338 339 0.895530 AGAAAGATCGGTCGGCTGAA 59.104 50.000 0.92 0.00 33.10 3.02
339 340 1.000145 GAAAGATCGGTCGGCTGAAC 59.000 55.000 0.92 0.00 33.10 3.18
340 341 0.320374 AAAGATCGGTCGGCTGAACA 59.680 50.000 11.99 0.00 33.10 3.18
341 342 0.108615 AAGATCGGTCGGCTGAACAG 60.109 55.000 11.99 3.70 33.10 3.16
342 343 0.965866 AGATCGGTCGGCTGAACAGA 60.966 55.000 11.99 9.37 33.10 3.41
343 344 0.108804 GATCGGTCGGCTGAACAGAA 60.109 55.000 11.99 0.00 33.10 3.02
344 345 0.320374 ATCGGTCGGCTGAACAGAAA 59.680 50.000 11.99 0.00 33.10 2.52
345 346 0.319555 TCGGTCGGCTGAACAGAAAG 60.320 55.000 11.99 0.00 0.00 2.62
346 347 0.319555 CGGTCGGCTGAACAGAAAGA 60.320 55.000 11.99 0.00 0.00 2.52
347 348 1.433534 GGTCGGCTGAACAGAAAGAG 58.566 55.000 5.46 0.00 0.00 2.85
348 349 1.270358 GGTCGGCTGAACAGAAAGAGT 60.270 52.381 5.46 0.00 0.00 3.24
349 350 2.484889 GTCGGCTGAACAGAAAGAGTT 58.515 47.619 0.00 0.00 0.00 3.01
350 351 2.872858 GTCGGCTGAACAGAAAGAGTTT 59.127 45.455 0.00 0.00 0.00 2.66
351 352 3.059529 GTCGGCTGAACAGAAAGAGTTTC 60.060 47.826 0.00 0.00 39.96 2.78
352 353 2.224314 CGGCTGAACAGAAAGAGTTTCC 59.776 50.000 5.97 0.00 40.54 3.13
353 354 2.554462 GGCTGAACAGAAAGAGTTTCCC 59.446 50.000 5.97 0.00 40.54 3.97
369 370 1.055040 TCCCAAATGCCAACCCTTTG 58.945 50.000 0.00 0.00 0.00 2.77
372 373 1.608801 CCAAATGCCAACCCTTTGAGC 60.609 52.381 0.00 0.00 34.24 4.26
632 646 2.742372 CCTTCCGGTCGCACTTGG 60.742 66.667 0.00 0.00 0.00 3.61
867 892 7.391148 AACGAATTTGCCATGACTAACTAAT 57.609 32.000 0.00 0.00 0.00 1.73
869 894 7.826690 ACGAATTTGCCATGACTAACTAATTT 58.173 30.769 0.00 0.00 0.00 1.82
870 895 7.754924 ACGAATTTGCCATGACTAACTAATTTG 59.245 33.333 0.00 0.00 0.00 2.32
873 898 5.794687 TGCCATGACTAACTAATTTGTCG 57.205 39.130 0.00 0.00 41.71 4.35
884 912 8.881743 ACTAACTAATTTGTCGTTTGTGTTGTA 58.118 29.630 0.00 0.00 0.00 2.41
893 921 2.796735 CGTTTGTGTTGTACCAAAGGGC 60.797 50.000 6.96 0.00 37.90 5.19
921 957 4.131649 ACACAGTGTGCTACAACAGTTA 57.868 40.909 23.21 0.00 36.98 2.24
922 958 4.509616 ACACAGTGTGCTACAACAGTTAA 58.490 39.130 23.21 0.00 36.98 2.01
924 960 5.413213 ACACAGTGTGCTACAACAGTTAAAA 59.587 36.000 23.21 0.00 36.98 1.52
947 983 2.662866 CTCCAAATGATCAGGCCACAT 58.337 47.619 5.01 1.94 0.00 3.21
977 1013 7.446931 TGAATCCTCTGATACTGATAGTCTGAC 59.553 40.741 0.00 0.00 0.00 3.51
1052 1091 3.652687 AGGCTCGAAGCATGGGAT 58.347 55.556 8.71 0.00 44.75 3.85
1056 1095 0.942962 GCTCGAAGCATGGGATGAAG 59.057 55.000 0.00 0.00 41.89 3.02
1214 1253 4.225492 TCGTGTTTAACCCCCTGAATATCA 59.775 41.667 0.00 0.00 0.00 2.15
1218 1257 6.379988 GTGTTTAACCCCCTGAATATCAATGT 59.620 38.462 0.00 0.00 0.00 2.71
1223 1262 6.529084 ACCCCCTGAATATCAATGTGATTA 57.471 37.500 0.00 0.00 38.26 1.75
1224 1263 6.546484 ACCCCCTGAATATCAATGTGATTAG 58.454 40.000 0.00 0.00 38.26 1.73
1225 1264 6.103205 ACCCCCTGAATATCAATGTGATTAGT 59.897 38.462 0.00 0.00 38.26 2.24
1226 1265 7.294720 ACCCCCTGAATATCAATGTGATTAGTA 59.705 37.037 0.00 0.00 38.26 1.82
1227 1266 7.607991 CCCCCTGAATATCAATGTGATTAGTAC 59.392 40.741 0.00 0.00 38.26 2.73
1228 1267 8.378565 CCCCTGAATATCAATGTGATTAGTACT 58.621 37.037 0.00 0.00 38.26 2.73
1229 1268 9.429359 CCCTGAATATCAATGTGATTAGTACTC 57.571 37.037 0.00 0.00 38.26 2.59
1230 1269 9.429359 CCTGAATATCAATGTGATTAGTACTCC 57.571 37.037 0.00 0.00 38.26 3.85
1231 1270 9.429359 CTGAATATCAATGTGATTAGTACTCCC 57.571 37.037 0.00 0.00 38.26 4.30
1232 1271 9.159254 TGAATATCAATGTGATTAGTACTCCCT 57.841 33.333 0.00 0.00 38.26 4.20
1233 1272 9.646427 GAATATCAATGTGATTAGTACTCCCTC 57.354 37.037 0.00 0.00 38.26 4.30
1234 1273 5.871396 TCAATGTGATTAGTACTCCCTCC 57.129 43.478 0.00 0.00 0.00 4.30
1235 1274 4.341235 TCAATGTGATTAGTACTCCCTCCG 59.659 45.833 0.00 0.00 0.00 4.63
1236 1275 2.029623 TGTGATTAGTACTCCCTCCGC 58.970 52.381 0.00 0.00 0.00 5.54
1237 1276 2.029623 GTGATTAGTACTCCCTCCGCA 58.970 52.381 0.00 0.00 0.00 5.69
1238 1277 2.429610 GTGATTAGTACTCCCTCCGCAA 59.570 50.000 0.00 0.00 0.00 4.85
1239 1278 3.101437 TGATTAGTACTCCCTCCGCAAA 58.899 45.455 0.00 0.00 0.00 3.68
1240 1279 3.118884 TGATTAGTACTCCCTCCGCAAAC 60.119 47.826 0.00 0.00 0.00 2.93
1241 1280 2.226962 TAGTACTCCCTCCGCAAACT 57.773 50.000 0.00 0.00 0.00 2.66
1242 1281 2.226962 AGTACTCCCTCCGCAAACTA 57.773 50.000 0.00 0.00 0.00 2.24
1243 1282 2.532843 AGTACTCCCTCCGCAAACTAA 58.467 47.619 0.00 0.00 0.00 2.24
1244 1283 3.105283 AGTACTCCCTCCGCAAACTAAT 58.895 45.455 0.00 0.00 0.00 1.73
1245 1284 4.284178 AGTACTCCCTCCGCAAACTAATA 58.716 43.478 0.00 0.00 0.00 0.98
1246 1285 4.900054 AGTACTCCCTCCGCAAACTAATAT 59.100 41.667 0.00 0.00 0.00 1.28
1247 1286 6.073314 AGTACTCCCTCCGCAAACTAATATA 58.927 40.000 0.00 0.00 0.00 0.86
1248 1287 5.881923 ACTCCCTCCGCAAACTAATATAA 57.118 39.130 0.00 0.00 0.00 0.98
1249 1288 5.855045 ACTCCCTCCGCAAACTAATATAAG 58.145 41.667 0.00 0.00 0.00 1.73
1250 1289 5.601313 ACTCCCTCCGCAAACTAATATAAGA 59.399 40.000 0.00 0.00 0.00 2.10
1251 1290 6.097915 TCCCTCCGCAAACTAATATAAGAG 57.902 41.667 0.00 0.00 0.00 2.85
1252 1291 4.691216 CCCTCCGCAAACTAATATAAGAGC 59.309 45.833 0.00 0.00 0.00 4.09
1253 1292 4.386049 CCTCCGCAAACTAATATAAGAGCG 59.614 45.833 0.00 0.00 43.13 5.03
1254 1293 4.940463 TCCGCAAACTAATATAAGAGCGT 58.060 39.130 0.00 0.00 42.08 5.07
1255 1294 5.353938 TCCGCAAACTAATATAAGAGCGTT 58.646 37.500 0.00 0.00 42.08 4.84
1256 1295 5.813672 TCCGCAAACTAATATAAGAGCGTTT 59.186 36.000 0.00 0.00 42.08 3.60
1257 1296 6.979817 TCCGCAAACTAATATAAGAGCGTTTA 59.020 34.615 0.00 0.00 42.08 2.01
1258 1297 7.168637 TCCGCAAACTAATATAAGAGCGTTTAG 59.831 37.037 0.00 0.00 42.08 1.85
1259 1298 7.168637 CCGCAAACTAATATAAGAGCGTTTAGA 59.831 37.037 0.00 0.00 42.08 2.10
1260 1299 8.700644 CGCAAACTAATATAAGAGCGTTTAGAT 58.299 33.333 0.00 0.00 39.18 1.98
1271 1310 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
1272 1311 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
1286 1325 7.948034 ACTACTTTAGTGATCTAAGCACTCT 57.052 36.000 0.48 0.00 44.85 3.24
1287 1326 8.356000 ACTACTTTAGTGATCTAAGCACTCTT 57.644 34.615 0.48 0.00 44.85 2.85
1288 1327 9.463902 ACTACTTTAGTGATCTAAGCACTCTTA 57.536 33.333 0.48 0.00 44.85 2.10
1305 1344 8.643324 AGCACTCTTATATTAGTTTACAGAGGG 58.357 37.037 0.00 0.00 34.08 4.30
1320 1359 7.979444 TTACAGAGGGAGTACTTCAAATTTG 57.021 36.000 12.15 12.15 0.00 2.32
1485 1525 3.564511 GTGAATTGACCCGTCATGTTTG 58.435 45.455 0.00 0.00 39.64 2.93
1488 1528 1.614996 TTGACCCGTCATGTTTGCAT 58.385 45.000 0.00 0.00 39.64 3.96
1491 1531 2.290008 TGACCCGTCATGTTTGCATACT 60.290 45.455 8.78 0.00 34.14 2.12
1509 1549 9.944376 TTGCATACTTTCAGAAAATCTACTAGT 57.056 29.630 0.00 0.00 0.00 2.57
1612 1653 7.437267 TCAGCGCTAATGGTAAGTTTTACTATC 59.563 37.037 10.99 0.00 0.00 2.08
1674 1715 6.455360 TGGGATAGCTTTGAACATCATTTC 57.545 37.500 0.00 0.00 0.00 2.17
1844 1885 4.450976 AGACATGCTCGGTTATTGCATTA 58.549 39.130 0.00 0.00 43.85 1.90
1872 1913 3.339141 GAGTTCCTTTTAGCTGTCCCAG 58.661 50.000 0.00 0.00 34.12 4.45
2435 2512 1.137675 GCATTCCTCCTTTTCATGGGC 59.862 52.381 0.00 0.00 0.00 5.36
2448 2525 1.349026 TCATGGGCTAGCTAATCTGCC 59.651 52.381 15.72 12.25 44.22 4.85
2452 2529 0.105039 GGCTAGCTAATCTGCCGTGT 59.895 55.000 15.72 0.00 35.79 4.49
2971 3048 9.595823 TTACTGCTAAAATCTGTTGTACCTATC 57.404 33.333 0.00 0.00 0.00 2.08
3169 3425 3.678289 TGACTATGCATTTGTCACAGCT 58.322 40.909 22.86 0.00 36.03 4.24
3239 3497 2.576615 CCAAGCCCCTATTAAGACTGC 58.423 52.381 0.00 0.00 0.00 4.40
3425 3683 4.141680 GCAAACATCGTTTCTGTCTTACG 58.858 43.478 0.00 0.00 36.67 3.18
3646 3910 9.210426 GTAATACTCTAATTGCATTGTGTTTCG 57.790 33.333 0.00 0.00 0.00 3.46
3684 3948 8.450578 CAGAGGTGCTTTGTTTATATATTGGA 57.549 34.615 0.00 0.00 0.00 3.53
4025 4290 3.589495 AGCCGACTTTAGTCAGGTAAC 57.411 47.619 10.27 1.50 44.99 2.50
4305 4570 2.862541 CACCCAAATCAAGTGTCCTCA 58.137 47.619 0.00 0.00 0.00 3.86
4307 4572 2.174639 ACCCAAATCAAGTGTCCTCACA 59.825 45.455 1.36 0.00 46.01 3.58
4366 4631 7.225734 GCTTTAACAAGATATCTCCAGTCTTCC 59.774 40.741 5.51 0.00 30.19 3.46
4370 4635 6.410540 ACAAGATATCTCCAGTCTTCCAAAC 58.589 40.000 5.51 0.00 30.19 2.93
4384 4649 0.179235 CCAAACGTATGCGGTGTTCG 60.179 55.000 8.39 0.00 43.45 3.95
4401 4666 1.082300 CGCTGTGCTGCAAGTCTTG 60.082 57.895 2.77 8.31 35.30 3.02
4406 4671 1.824230 TGTGCTGCAAGTCTTGGTTTT 59.176 42.857 14.40 0.00 35.30 2.43
4407 4672 2.195922 GTGCTGCAAGTCTTGGTTTTG 58.804 47.619 14.40 0.00 35.30 2.44
4408 4673 1.211743 GCTGCAAGTCTTGGTTTTGC 58.788 50.000 14.40 0.00 45.53 3.68
4411 4676 3.524541 CTGCAAGTCTTGGTTTTGCTTT 58.475 40.909 14.40 0.00 45.53 3.51
4412 4677 3.934579 CTGCAAGTCTTGGTTTTGCTTTT 59.065 39.130 14.40 0.00 45.53 2.27
4414 4679 5.669477 TGCAAGTCTTGGTTTTGCTTTTAT 58.331 33.333 14.40 0.00 45.53 1.40
4416 4681 7.268586 TGCAAGTCTTGGTTTTGCTTTTATAA 58.731 30.769 14.40 0.00 45.53 0.98
4418 4683 8.223100 GCAAGTCTTGGTTTTGCTTTTATAATG 58.777 33.333 14.40 0.00 42.84 1.90
4450 4715 7.823745 TGAGATATTGACTGTACATGCTCTA 57.176 36.000 0.00 0.00 0.00 2.43
4470 4735 8.572185 TGCTCTATGTTTTTGTATTAACTTGCA 58.428 29.630 0.00 0.00 0.00 4.08
4475 4740 7.938563 TGTTTTTGTATTAACTTGCACCATC 57.061 32.000 0.00 0.00 0.00 3.51
4534 4799 5.888724 TCATCAGTTGACCCAAAACACTTTA 59.111 36.000 0.00 0.00 0.00 1.85
4551 4816 6.811954 ACACTTTAACACGGAATTTTGGAAT 58.188 32.000 0.00 0.00 0.00 3.01
4578 4843 6.865726 GTGAAGATGACGTAAGCATATCAGAT 59.134 38.462 0.00 0.00 45.62 2.90
4639 4904 6.887545 TCACTTTCCTTTCCTCTTTGTGTTTA 59.112 34.615 0.00 0.00 0.00 2.01
4647 4912 8.507249 CCTTTCCTCTTTGTGTTTATAAGACTG 58.493 37.037 0.00 0.00 0.00 3.51
4649 4914 6.769512 TCCTCTTTGTGTTTATAAGACTGCT 58.230 36.000 0.00 0.00 0.00 4.24
4667 4932 5.491070 ACTGCTCAAAGTCATACTTGCATA 58.509 37.500 4.41 0.00 38.66 3.14
4673 4938 7.439356 GCTCAAAGTCATACTTGCATATAGTGA 59.561 37.037 0.00 0.00 38.66 3.41
4675 4940 9.665719 TCAAAGTCATACTTGCATATAGTGAAA 57.334 29.630 0.00 0.00 38.66 2.69
4724 4989 1.552337 TCACAGATGAGGAAGAGGCAC 59.448 52.381 0.00 0.00 0.00 5.01
4780 5045 1.673329 GGAGGGTTCGAAGCAAGACTC 60.673 57.143 26.94 21.71 0.00 3.36
4783 5048 1.341606 GGTTCGAAGCAAGACTCGAG 58.658 55.000 21.83 11.84 35.98 4.04
4867 5132 0.391661 AGATGCCGCGTTTCTGTGAT 60.392 50.000 4.92 0.00 0.00 3.06
4868 5133 1.134818 AGATGCCGCGTTTCTGTGATA 60.135 47.619 4.92 0.00 0.00 2.15
4869 5134 1.258982 GATGCCGCGTTTCTGTGATAG 59.741 52.381 4.92 0.00 0.00 2.08
4876 5141 4.163552 CGCGTTTCTGTGATAGTACTTCA 58.836 43.478 0.00 2.08 0.00 3.02
4910 5199 8.146053 TGAGGATTGGATAGAACTGTTTTCTA 57.854 34.615 0.00 0.00 35.71 2.10
4950 5239 9.585099 TGCTTGATCAAAAATTATATGGTGTTC 57.415 29.630 9.88 0.00 0.00 3.18
4974 5263 0.662619 TGCAGCAAGTCTTGGTTTCG 59.337 50.000 14.56 5.50 39.79 3.46
4986 5275 6.631962 AGTCTTGGTTTCGTTCCTATAGAAG 58.368 40.000 0.00 0.00 34.29 2.85
4992 5281 7.447594 TGGTTTCGTTCCTATAGAAGTTTTCT 58.552 34.615 0.00 0.00 43.72 2.52
4993 5282 7.601508 TGGTTTCGTTCCTATAGAAGTTTTCTC 59.398 37.037 0.00 0.00 41.14 2.87
5120 5410 2.957680 TGCAAGCAGGAAAAGATTGTCA 59.042 40.909 0.00 0.00 35.01 3.58
5409 5896 2.106683 CCAAATCCACGGCCGACTC 61.107 63.158 35.90 0.00 0.00 3.36
5556 6043 1.396301 GAGCCTTCTGATGAGTTTGCG 59.604 52.381 0.00 0.00 0.00 4.85
5617 6104 1.001974 TGTCACCACCTGAGAAATCCG 59.998 52.381 0.00 0.00 0.00 4.18
5715 6202 1.627297 GCCAGAAGGGAAGGGATCGT 61.627 60.000 0.00 0.00 40.01 3.73
5828 6315 8.503458 ACATCAAAGAAGATGAAACTATGAGG 57.497 34.615 10.59 0.00 46.51 3.86
5920 6407 7.744087 TTGCTGATACAGTAATCAAACACTT 57.256 32.000 0.00 0.00 35.51 3.16
5968 6456 5.087323 TCCTCTCTTAAAAGGAGAAGCTGA 58.913 41.667 0.00 0.00 39.04 4.26
6009 6497 9.219603 CAGTAGGAATGTGACTAGAATTTTTGA 57.780 33.333 0.00 0.00 0.00 2.69
6068 6558 0.323957 GTTCGGTTAAGCCACTCCCT 59.676 55.000 0.00 0.00 36.97 4.20
6103 6593 0.933700 GAATGGAGGGGATTTGGGGA 59.066 55.000 0.00 0.00 0.00 4.81
6104 6594 0.936691 AATGGAGGGGATTTGGGGAG 59.063 55.000 0.00 0.00 0.00 4.30
6137 6627 7.961351 ACTAGATGAGATTTAATCCCTGTCAG 58.039 38.462 0.00 0.00 0.00 3.51
6156 6646 3.054875 TCAGTCCCTCTCATTTGTCATGG 60.055 47.826 0.00 0.00 0.00 3.66
6167 6657 3.980646 TTTGTCATGGAACCGAACAAG 57.019 42.857 0.00 0.00 0.00 3.16
6168 6658 2.920724 TGTCATGGAACCGAACAAGA 57.079 45.000 0.00 0.00 0.00 3.02
6275 6875 3.960755 TGAGAACCTGTGAGAAGAGTTGA 59.039 43.478 0.00 0.00 0.00 3.18
6276 6876 4.202161 TGAGAACCTGTGAGAAGAGTTGAC 60.202 45.833 0.00 0.00 0.00 3.18
6278 6878 3.742433 ACCTGTGAGAAGAGTTGACAG 57.258 47.619 0.00 0.00 34.95 3.51
6280 6880 3.900601 ACCTGTGAGAAGAGTTGACAGAT 59.099 43.478 0.00 0.00 36.89 2.90
6281 6881 5.080337 ACCTGTGAGAAGAGTTGACAGATA 58.920 41.667 0.00 0.00 36.89 1.98
6282 6882 5.719085 ACCTGTGAGAAGAGTTGACAGATAT 59.281 40.000 0.00 0.00 36.89 1.63
6283 6883 6.127479 ACCTGTGAGAAGAGTTGACAGATATC 60.127 42.308 0.00 0.00 36.89 1.63
6440 7043 3.129287 ACCAGCAAGCTGTATTGTATTGC 59.871 43.478 19.60 1.00 45.05 3.56
6471 7074 0.616111 CCACCTACAGAGCCAGGTCT 60.616 60.000 0.00 0.00 43.45 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.477975 GTGACCTCGTCCGAGCCG 62.478 72.222 11.11 1.68 40.69 5.52
1 2 4.131088 GGTGACCTCGTCCGAGCC 62.131 72.222 11.11 3.55 40.69 4.70
2 3 4.477975 CGGTGACCTCGTCCGAGC 62.478 72.222 11.11 0.00 46.05 5.03
3 4 4.477975 GCGGTGACCTCGTCCGAG 62.478 72.222 9.68 9.68 46.05 4.63
21 22 4.373116 TCACTTCTCCACGGCCGC 62.373 66.667 28.58 0.00 0.00 6.53
22 23 2.432628 GTCACTTCTCCACGGCCG 60.433 66.667 26.86 26.86 0.00 6.13
23 24 2.047179 GGTCACTTCTCCACGGCC 60.047 66.667 0.00 0.00 0.00 6.13
24 25 1.070786 TTGGTCACTTCTCCACGGC 59.929 57.895 0.00 0.00 33.12 5.68
25 26 0.944311 CGTTGGTCACTTCTCCACGG 60.944 60.000 0.00 0.00 33.12 4.94
26 27 0.031585 TCGTTGGTCACTTCTCCACG 59.968 55.000 0.00 0.00 33.12 4.94
27 28 1.499049 GTCGTTGGTCACTTCTCCAC 58.501 55.000 0.00 0.00 33.12 4.02
28 29 0.391597 GGTCGTTGGTCACTTCTCCA 59.608 55.000 0.00 0.00 0.00 3.86
29 30 0.666577 CGGTCGTTGGTCACTTCTCC 60.667 60.000 0.00 0.00 0.00 3.71
30 31 0.313043 TCGGTCGTTGGTCACTTCTC 59.687 55.000 0.00 0.00 0.00 2.87
31 32 0.314302 CTCGGTCGTTGGTCACTTCT 59.686 55.000 0.00 0.00 0.00 2.85
32 33 0.666577 CCTCGGTCGTTGGTCACTTC 60.667 60.000 0.00 0.00 0.00 3.01
33 34 1.111116 TCCTCGGTCGTTGGTCACTT 61.111 55.000 0.00 0.00 0.00 3.16
34 35 1.524863 CTCCTCGGTCGTTGGTCACT 61.525 60.000 0.00 0.00 0.00 3.41
35 36 1.080705 CTCCTCGGTCGTTGGTCAC 60.081 63.158 0.00 0.00 0.00 3.67
36 37 0.611062 ATCTCCTCGGTCGTTGGTCA 60.611 55.000 0.00 0.00 0.00 4.02
37 38 0.179134 CATCTCCTCGGTCGTTGGTC 60.179 60.000 0.00 0.00 0.00 4.02
38 39 1.605058 CCATCTCCTCGGTCGTTGGT 61.605 60.000 0.00 0.00 0.00 3.67
39 40 1.141881 CCATCTCCTCGGTCGTTGG 59.858 63.158 0.00 0.00 0.00 3.77
40 41 0.101399 CTCCATCTCCTCGGTCGTTG 59.899 60.000 0.00 0.00 0.00 4.10
41 42 0.323542 ACTCCATCTCCTCGGTCGTT 60.324 55.000 0.00 0.00 0.00 3.85
42 43 0.545171 TACTCCATCTCCTCGGTCGT 59.455 55.000 0.00 0.00 0.00 4.34
43 44 1.537638 CATACTCCATCTCCTCGGTCG 59.462 57.143 0.00 0.00 0.00 4.79
44 45 2.817258 CTCATACTCCATCTCCTCGGTC 59.183 54.545 0.00 0.00 0.00 4.79
45 46 2.443632 TCTCATACTCCATCTCCTCGGT 59.556 50.000 0.00 0.00 0.00 4.69
46 47 3.081061 CTCTCATACTCCATCTCCTCGG 58.919 54.545 0.00 0.00 0.00 4.63
47 48 3.501828 CACTCTCATACTCCATCTCCTCG 59.498 52.174 0.00 0.00 0.00 4.63
48 49 3.826157 CCACTCTCATACTCCATCTCCTC 59.174 52.174 0.00 0.00 0.00 3.71
49 50 3.206412 ACCACTCTCATACTCCATCTCCT 59.794 47.826 0.00 0.00 0.00 3.69
50 51 3.571590 ACCACTCTCATACTCCATCTCC 58.428 50.000 0.00 0.00 0.00 3.71
51 52 4.646945 TGAACCACTCTCATACTCCATCTC 59.353 45.833 0.00 0.00 0.00 2.75
52 53 4.614475 TGAACCACTCTCATACTCCATCT 58.386 43.478 0.00 0.00 0.00 2.90
53 54 4.202202 CCTGAACCACTCTCATACTCCATC 60.202 50.000 0.00 0.00 0.00 3.51
54 55 3.708631 CCTGAACCACTCTCATACTCCAT 59.291 47.826 0.00 0.00 0.00 3.41
55 56 3.099905 CCTGAACCACTCTCATACTCCA 58.900 50.000 0.00 0.00 0.00 3.86
56 57 2.159028 GCCTGAACCACTCTCATACTCC 60.159 54.545 0.00 0.00 0.00 3.85
57 58 2.159028 GGCCTGAACCACTCTCATACTC 60.159 54.545 0.00 0.00 0.00 2.59
58 59 1.834263 GGCCTGAACCACTCTCATACT 59.166 52.381 0.00 0.00 0.00 2.12
59 60 1.134371 GGGCCTGAACCACTCTCATAC 60.134 57.143 0.84 0.00 0.00 2.39
60 61 1.204146 GGGCCTGAACCACTCTCATA 58.796 55.000 0.84 0.00 0.00 2.15
61 62 1.903877 CGGGCCTGAACCACTCTCAT 61.904 60.000 5.28 0.00 0.00 2.90
62 63 2.583441 CGGGCCTGAACCACTCTCA 61.583 63.158 5.28 0.00 0.00 3.27
63 64 2.266055 CGGGCCTGAACCACTCTC 59.734 66.667 5.28 0.00 0.00 3.20
64 65 2.526873 ACGGGCCTGAACCACTCT 60.527 61.111 21.41 0.00 0.00 3.24
65 66 2.047179 GACGGGCCTGAACCACTC 60.047 66.667 21.41 0.00 0.00 3.51
66 67 4.003788 CGACGGGCCTGAACCACT 62.004 66.667 21.41 0.00 0.00 4.00
67 68 3.310860 ATCGACGGGCCTGAACCAC 62.311 63.158 21.41 3.13 0.00 4.16
68 69 3.000819 ATCGACGGGCCTGAACCA 61.001 61.111 21.41 0.49 0.00 3.67
69 70 2.511600 CATCGACGGGCCTGAACC 60.512 66.667 21.41 5.93 0.00 3.62
70 71 2.511600 CCATCGACGGGCCTGAAC 60.512 66.667 21.41 10.97 0.00 3.18
71 72 2.682136 TCCATCGACGGGCCTGAA 60.682 61.111 21.41 3.24 0.00 3.02
72 73 3.147595 CTCCATCGACGGGCCTGA 61.148 66.667 21.41 4.08 0.00 3.86
73 74 4.227134 CCTCCATCGACGGGCCTG 62.227 72.222 11.02 11.02 0.00 4.85
74 75 4.458829 TCCTCCATCGACGGGCCT 62.459 66.667 0.84 0.00 0.00 5.19
75 76 3.917760 CTCCTCCATCGACGGGCC 61.918 72.222 0.00 0.00 0.00 5.80
76 77 2.833582 TCTCCTCCATCGACGGGC 60.834 66.667 0.00 0.00 0.00 6.13
77 78 1.152943 TCTCTCCTCCATCGACGGG 60.153 63.158 0.00 0.00 0.00 5.28
78 79 1.777030 CGTCTCTCCTCCATCGACGG 61.777 65.000 0.00 0.00 42.49 4.79
79 80 1.644372 CGTCTCTCCTCCATCGACG 59.356 63.158 0.00 0.00 40.92 5.12
80 81 1.448922 CCCGTCTCTCCTCCATCGAC 61.449 65.000 0.00 0.00 0.00 4.20
81 82 1.152943 CCCGTCTCTCCTCCATCGA 60.153 63.158 0.00 0.00 0.00 3.59
82 83 1.152943 TCCCGTCTCTCCTCCATCG 60.153 63.158 0.00 0.00 0.00 3.84
83 84 0.106419 ACTCCCGTCTCTCCTCCATC 60.106 60.000 0.00 0.00 0.00 3.51
84 85 0.396417 CACTCCCGTCTCTCCTCCAT 60.396 60.000 0.00 0.00 0.00 3.41
85 86 1.000771 CACTCCCGTCTCTCCTCCA 60.001 63.158 0.00 0.00 0.00 3.86
86 87 2.419739 GCACTCCCGTCTCTCCTCC 61.420 68.421 0.00 0.00 0.00 4.30
87 88 2.419739 GGCACTCCCGTCTCTCCTC 61.420 68.421 0.00 0.00 0.00 3.71
88 89 2.363147 GGCACTCCCGTCTCTCCT 60.363 66.667 0.00 0.00 0.00 3.69
97 98 1.144936 CTCCTTCATCGGCACTCCC 59.855 63.158 0.00 0.00 0.00 4.30
98 99 1.144936 CCTCCTTCATCGGCACTCC 59.855 63.158 0.00 0.00 0.00 3.85
99 100 0.103937 CTCCTCCTTCATCGGCACTC 59.896 60.000 0.00 0.00 0.00 3.51
100 101 0.324738 TCTCCTCCTTCATCGGCACT 60.325 55.000 0.00 0.00 0.00 4.40
101 102 0.103937 CTCTCCTCCTTCATCGGCAC 59.896 60.000 0.00 0.00 0.00 5.01
102 103 1.680522 GCTCTCCTCCTTCATCGGCA 61.681 60.000 0.00 0.00 0.00 5.69
103 104 1.068921 GCTCTCCTCCTTCATCGGC 59.931 63.158 0.00 0.00 0.00 5.54
104 105 1.047002 ATGCTCTCCTCCTTCATCGG 58.953 55.000 0.00 0.00 0.00 4.18
105 106 1.873069 GCATGCTCTCCTCCTTCATCG 60.873 57.143 11.37 0.00 0.00 3.84
106 107 1.417145 AGCATGCTCTCCTCCTTCATC 59.583 52.381 16.30 0.00 0.00 2.92
107 108 1.417145 GAGCATGCTCTCCTCCTTCAT 59.583 52.381 35.26 3.52 39.80 2.57
108 109 0.829333 GAGCATGCTCTCCTCCTTCA 59.171 55.000 35.26 0.00 39.80 3.02
109 110 0.249405 CGAGCATGCTCTCCTCCTTC 60.249 60.000 37.44 15.53 40.69 3.46
110 111 1.821936 CGAGCATGCTCTCCTCCTT 59.178 57.895 37.44 8.09 40.69 3.36
111 112 2.795110 GCGAGCATGCTCTCCTCCT 61.795 63.158 37.44 8.86 40.69 3.69
112 113 2.280052 GCGAGCATGCTCTCCTCC 60.280 66.667 37.44 20.20 40.69 4.30
113 114 2.280052 GGCGAGCATGCTCTCCTC 60.280 66.667 37.96 25.45 42.80 3.71
114 115 3.859414 GGGCGAGCATGCTCTCCT 61.859 66.667 40.91 15.80 44.80 3.69
115 116 4.166888 TGGGCGAGCATGCTCTCC 62.167 66.667 37.80 37.80 44.72 3.71
116 117 2.894387 GTGGGCGAGCATGCTCTC 60.894 66.667 37.44 32.04 40.69 3.20
117 118 4.827087 CGTGGGCGAGCATGCTCT 62.827 66.667 37.44 12.83 40.69 4.09
140 141 1.930908 GCGCTACTAGACACGGTGGT 61.931 60.000 13.48 3.12 0.00 4.16
141 142 1.226603 GCGCTACTAGACACGGTGG 60.227 63.158 13.48 0.00 0.00 4.61
142 143 1.582937 CGCGCTACTAGACACGGTG 60.583 63.158 5.56 6.58 0.00 4.94
143 144 2.789917 CGCGCTACTAGACACGGT 59.210 61.111 5.56 0.00 0.00 4.83
144 145 2.651232 GCGCGCTACTAGACACGG 60.651 66.667 26.67 0.00 0.00 4.94
145 146 3.011789 CGCGCGCTACTAGACACG 61.012 66.667 30.48 5.07 0.00 4.49
146 147 2.099831 ACGCGCGCTACTAGACAC 59.900 61.111 32.58 0.00 0.00 3.67
147 148 2.099638 CACGCGCGCTACTAGACA 59.900 61.111 32.58 0.00 0.00 3.41
148 149 3.313257 GCACGCGCGCTACTAGAC 61.313 66.667 32.58 6.46 0.00 2.59
149 150 4.547905 GGCACGCGCGCTACTAGA 62.548 66.667 32.58 0.00 39.92 2.43
150 151 3.177272 TAGGCACGCGCGCTACTAG 62.177 63.158 32.58 15.76 39.92 2.57
151 152 3.177272 CTAGGCACGCGCGCTACTA 62.177 63.158 32.58 25.54 39.92 1.82
152 153 4.554363 CTAGGCACGCGCGCTACT 62.554 66.667 32.58 25.81 39.92 2.57
153 154 4.547905 TCTAGGCACGCGCGCTAC 62.548 66.667 32.58 19.90 39.92 3.58
154 155 4.251843 CTCTAGGCACGCGCGCTA 62.252 66.667 32.58 21.51 39.92 4.26
159 160 3.812019 ACGACCTCTAGGCACGCG 61.812 66.667 3.53 3.53 40.22 6.01
160 161 2.202623 CACGACCTCTAGGCACGC 60.203 66.667 13.53 0.00 40.22 5.34
161 162 2.490217 CCACGACCTCTAGGCACG 59.510 66.667 12.47 12.47 41.53 5.34
162 163 1.043673 ATCCCACGACCTCTAGGCAC 61.044 60.000 0.00 0.00 39.32 5.01
163 164 0.755698 GATCCCACGACCTCTAGGCA 60.756 60.000 0.00 0.00 39.32 4.75
164 165 1.465200 GGATCCCACGACCTCTAGGC 61.465 65.000 0.00 0.00 39.32 3.93
165 166 0.106167 TGGATCCCACGACCTCTAGG 60.106 60.000 9.90 0.00 42.17 3.02
166 167 1.133761 TCTGGATCCCACGACCTCTAG 60.134 57.143 9.90 0.00 0.00 2.43
167 168 0.924090 TCTGGATCCCACGACCTCTA 59.076 55.000 9.90 0.00 0.00 2.43
168 169 0.263172 ATCTGGATCCCACGACCTCT 59.737 55.000 9.90 0.00 0.00 3.69
169 170 0.676736 GATCTGGATCCCACGACCTC 59.323 60.000 9.90 0.00 31.76 3.85
170 171 0.263172 AGATCTGGATCCCACGACCT 59.737 55.000 9.90 0.00 38.58 3.85
171 172 1.123928 AAGATCTGGATCCCACGACC 58.876 55.000 9.90 0.00 38.58 4.79
172 173 1.808133 GCAAGATCTGGATCCCACGAC 60.808 57.143 9.90 0.00 38.58 4.34
173 174 0.465705 GCAAGATCTGGATCCCACGA 59.534 55.000 9.90 3.51 38.58 4.35
174 175 0.178767 TGCAAGATCTGGATCCCACG 59.821 55.000 9.90 0.00 38.58 4.94
175 176 2.019984 GTTGCAAGATCTGGATCCCAC 58.980 52.381 9.90 0.00 38.58 4.61
176 177 1.634973 TGTTGCAAGATCTGGATCCCA 59.365 47.619 9.90 0.00 38.58 4.37
177 178 2.425143 TGTTGCAAGATCTGGATCCC 57.575 50.000 9.90 0.00 38.58 3.85
178 179 2.098770 GCTTGTTGCAAGATCTGGATCC 59.901 50.000 4.20 4.20 42.31 3.36
179 180 3.015327 AGCTTGTTGCAAGATCTGGATC 58.985 45.455 12.45 2.63 45.94 3.36
180 181 3.083122 AGCTTGTTGCAAGATCTGGAT 57.917 42.857 12.45 0.00 45.94 3.41
181 182 2.574006 AGCTTGTTGCAAGATCTGGA 57.426 45.000 12.45 0.00 45.94 3.86
182 183 3.341823 ACTAGCTTGTTGCAAGATCTGG 58.658 45.455 12.45 3.86 45.94 3.86
183 184 4.720090 CAACTAGCTTGTTGCAAGATCTG 58.280 43.478 24.41 2.70 45.94 2.90
194 195 0.889186 CCCCGCAACAACTAGCTTGT 60.889 55.000 0.00 0.00 45.68 3.16
195 196 1.875963 CCCCGCAACAACTAGCTTG 59.124 57.895 0.00 0.00 35.77 4.01
196 197 1.971695 GCCCCGCAACAACTAGCTT 60.972 57.895 0.00 0.00 0.00 3.74
197 198 2.359975 GCCCCGCAACAACTAGCT 60.360 61.111 0.00 0.00 0.00 3.32
198 199 3.799755 CGCCCCGCAACAACTAGC 61.800 66.667 0.00 0.00 0.00 3.42
199 200 1.231958 TTTCGCCCCGCAACAACTAG 61.232 55.000 0.00 0.00 0.00 2.57
200 201 0.818445 TTTTCGCCCCGCAACAACTA 60.818 50.000 0.00 0.00 0.00 2.24
201 202 1.460273 ATTTTCGCCCCGCAACAACT 61.460 50.000 0.00 0.00 0.00 3.16
202 203 0.598942 AATTTTCGCCCCGCAACAAC 60.599 50.000 0.00 0.00 0.00 3.32
203 204 0.598680 CAATTTTCGCCCCGCAACAA 60.599 50.000 0.00 0.00 0.00 2.83
204 205 1.006805 CAATTTTCGCCCCGCAACA 60.007 52.632 0.00 0.00 0.00 3.33
205 206 2.379634 GCAATTTTCGCCCCGCAAC 61.380 57.895 0.00 0.00 0.00 4.17
206 207 2.048690 GCAATTTTCGCCCCGCAA 60.049 55.556 0.00 0.00 0.00 4.85
207 208 2.861101 TTGCAATTTTCGCCCCGCA 61.861 52.632 0.00 0.00 0.00 5.69
208 209 2.048690 TTGCAATTTTCGCCCCGC 60.049 55.556 0.00 0.00 0.00 6.13
209 210 0.598680 TTGTTGCAATTTTCGCCCCG 60.599 50.000 0.59 0.00 0.00 5.73
210 211 1.464219 CATTGTTGCAATTTTCGCCCC 59.536 47.619 0.59 0.00 0.00 5.80
211 212 1.464219 CCATTGTTGCAATTTTCGCCC 59.536 47.619 0.59 0.00 0.00 6.13
212 213 2.142319 ACCATTGTTGCAATTTTCGCC 58.858 42.857 0.59 0.00 0.00 5.54
213 214 2.157474 GGACCATTGTTGCAATTTTCGC 59.843 45.455 0.59 0.00 0.00 4.70
214 215 3.429543 CAGGACCATTGTTGCAATTTTCG 59.570 43.478 0.59 0.00 0.00 3.46
215 216 4.379652 ACAGGACCATTGTTGCAATTTTC 58.620 39.130 0.59 0.00 0.00 2.29
216 217 4.420522 ACAGGACCATTGTTGCAATTTT 57.579 36.364 0.59 0.00 0.00 1.82
217 218 4.128643 CAACAGGACCATTGTTGCAATTT 58.871 39.130 12.26 0.00 45.97 1.82
218 219 3.731089 CAACAGGACCATTGTTGCAATT 58.269 40.909 12.26 0.00 45.97 2.32
219 220 3.389925 CAACAGGACCATTGTTGCAAT 57.610 42.857 12.26 0.00 45.97 3.56
220 221 2.886862 CAACAGGACCATTGTTGCAA 57.113 45.000 12.26 0.00 45.97 4.08
224 225 2.483538 GCTTTGCAACAGGACCATTGTT 60.484 45.455 0.00 2.41 39.23 2.83
225 226 1.069049 GCTTTGCAACAGGACCATTGT 59.931 47.619 0.00 0.00 0.00 2.71
226 227 1.342174 AGCTTTGCAACAGGACCATTG 59.658 47.619 0.00 0.00 0.00 2.82
227 228 1.708341 AGCTTTGCAACAGGACCATT 58.292 45.000 0.00 0.00 0.00 3.16
228 229 2.584835 TAGCTTTGCAACAGGACCAT 57.415 45.000 0.00 0.00 0.00 3.55
229 230 2.356665 TTAGCTTTGCAACAGGACCA 57.643 45.000 0.00 0.00 0.00 4.02
230 231 2.623416 AGTTTAGCTTTGCAACAGGACC 59.377 45.455 0.00 0.00 0.00 4.46
231 232 3.066760 ACAGTTTAGCTTTGCAACAGGAC 59.933 43.478 0.00 0.00 0.00 3.85
232 233 3.066621 CACAGTTTAGCTTTGCAACAGGA 59.933 43.478 0.00 0.00 0.00 3.86
233 234 3.066621 TCACAGTTTAGCTTTGCAACAGG 59.933 43.478 0.00 0.00 0.00 4.00
234 235 4.291540 TCACAGTTTAGCTTTGCAACAG 57.708 40.909 0.00 1.22 0.00 3.16
235 236 4.710423 TTCACAGTTTAGCTTTGCAACA 57.290 36.364 0.00 0.00 0.00 3.33
236 237 6.401955 TTTTTCACAGTTTAGCTTTGCAAC 57.598 33.333 0.00 0.00 0.00 4.17
279 280 1.970092 TGACCGTTCGGATGGTTTTT 58.030 45.000 18.28 0.00 45.29 1.94
280 281 2.194201 ATGACCGTTCGGATGGTTTT 57.806 45.000 18.28 0.00 45.29 2.43
281 282 3.337694 TTATGACCGTTCGGATGGTTT 57.662 42.857 18.28 2.85 45.29 3.27
282 283 3.004862 GTTTATGACCGTTCGGATGGTT 58.995 45.455 18.28 0.00 45.29 3.67
284 285 2.350498 GTGTTTATGACCGTTCGGATGG 59.650 50.000 18.28 0.00 37.98 3.51
285 286 2.997303 TGTGTTTATGACCGTTCGGATG 59.003 45.455 18.28 0.00 0.00 3.51
286 287 3.259064 CTGTGTTTATGACCGTTCGGAT 58.741 45.455 18.28 4.59 0.00 4.18
287 288 2.036217 ACTGTGTTTATGACCGTTCGGA 59.964 45.455 18.28 0.00 0.00 4.55
288 289 2.409975 ACTGTGTTTATGACCGTTCGG 58.590 47.619 9.81 9.81 0.00 4.30
289 290 4.478699 TCTACTGTGTTTATGACCGTTCG 58.521 43.478 0.00 0.00 0.00 3.95
290 291 5.220416 GCATCTACTGTGTTTATGACCGTTC 60.220 44.000 0.00 0.00 0.00 3.95
291 292 4.630069 GCATCTACTGTGTTTATGACCGTT 59.370 41.667 0.00 0.00 0.00 4.44
292 293 4.181578 GCATCTACTGTGTTTATGACCGT 58.818 43.478 0.00 0.00 0.00 4.83
293 294 3.242944 CGCATCTACTGTGTTTATGACCG 59.757 47.826 0.00 0.00 0.00 4.79
294 295 3.555956 CCGCATCTACTGTGTTTATGACC 59.444 47.826 0.00 0.00 33.29 4.02
295 296 3.555956 CCCGCATCTACTGTGTTTATGAC 59.444 47.826 0.00 0.00 33.29 3.06
296 297 3.792401 CCCGCATCTACTGTGTTTATGA 58.208 45.455 0.00 0.00 33.29 2.15
297 298 2.287915 GCCCGCATCTACTGTGTTTATG 59.712 50.000 0.00 0.00 33.29 1.90
298 299 2.093181 TGCCCGCATCTACTGTGTTTAT 60.093 45.455 0.00 0.00 33.29 1.40
299 300 1.276705 TGCCCGCATCTACTGTGTTTA 59.723 47.619 0.00 0.00 33.29 2.01
300 301 0.036164 TGCCCGCATCTACTGTGTTT 59.964 50.000 0.00 0.00 33.29 2.83
301 302 0.391661 CTGCCCGCATCTACTGTGTT 60.392 55.000 0.00 0.00 33.29 3.32
302 303 1.219124 CTGCCCGCATCTACTGTGT 59.781 57.895 0.00 0.00 33.29 3.72
303 304 0.108186 TTCTGCCCGCATCTACTGTG 60.108 55.000 0.00 0.00 35.02 3.66
304 305 0.613260 TTTCTGCCCGCATCTACTGT 59.387 50.000 0.00 0.00 0.00 3.55
305 306 1.134699 TCTTTCTGCCCGCATCTACTG 60.135 52.381 0.00 0.00 0.00 2.74
306 307 1.195115 TCTTTCTGCCCGCATCTACT 58.805 50.000 0.00 0.00 0.00 2.57
307 308 2.139118 GATCTTTCTGCCCGCATCTAC 58.861 52.381 0.00 0.00 0.00 2.59
308 309 1.269778 CGATCTTTCTGCCCGCATCTA 60.270 52.381 0.00 0.00 0.00 1.98
309 310 0.531532 CGATCTTTCTGCCCGCATCT 60.532 55.000 0.00 0.00 0.00 2.90
310 311 1.502163 CCGATCTTTCTGCCCGCATC 61.502 60.000 0.00 0.00 0.00 3.91
311 312 1.524621 CCGATCTTTCTGCCCGCAT 60.525 57.895 0.00 0.00 0.00 4.73
312 313 2.125147 CCGATCTTTCTGCCCGCA 60.125 61.111 0.00 0.00 0.00 5.69
313 314 2.125106 ACCGATCTTTCTGCCCGC 60.125 61.111 0.00 0.00 0.00 6.13
314 315 1.878522 CGACCGATCTTTCTGCCCG 60.879 63.158 0.00 0.00 0.00 6.13
315 316 1.521681 CCGACCGATCTTTCTGCCC 60.522 63.158 0.00 0.00 0.00 5.36
316 317 2.174319 GCCGACCGATCTTTCTGCC 61.174 63.158 0.00 0.00 0.00 4.85
317 318 1.153549 AGCCGACCGATCTTTCTGC 60.154 57.895 0.00 0.00 0.00 4.26
318 319 0.173481 TCAGCCGACCGATCTTTCTG 59.827 55.000 0.00 0.00 0.00 3.02
319 320 0.895530 TTCAGCCGACCGATCTTTCT 59.104 50.000 0.00 0.00 0.00 2.52
320 321 1.000145 GTTCAGCCGACCGATCTTTC 59.000 55.000 0.00 0.00 0.00 2.62
321 322 0.320374 TGTTCAGCCGACCGATCTTT 59.680 50.000 0.00 0.00 0.00 2.52
322 323 0.108615 CTGTTCAGCCGACCGATCTT 60.109 55.000 0.00 0.00 0.00 2.40
323 324 0.965866 TCTGTTCAGCCGACCGATCT 60.966 55.000 0.00 0.00 0.00 2.75
324 325 0.108804 TTCTGTTCAGCCGACCGATC 60.109 55.000 0.00 0.00 0.00 3.69
325 326 0.320374 TTTCTGTTCAGCCGACCGAT 59.680 50.000 0.00 0.00 0.00 4.18
326 327 0.319555 CTTTCTGTTCAGCCGACCGA 60.320 55.000 0.00 0.00 0.00 4.69
327 328 0.319555 TCTTTCTGTTCAGCCGACCG 60.320 55.000 0.00 0.00 0.00 4.79
328 329 1.270358 ACTCTTTCTGTTCAGCCGACC 60.270 52.381 0.00 0.00 0.00 4.79
329 330 2.156343 ACTCTTTCTGTTCAGCCGAC 57.844 50.000 0.00 0.00 0.00 4.79
330 331 2.910688 AACTCTTTCTGTTCAGCCGA 57.089 45.000 0.00 0.00 0.00 5.54
331 332 2.224314 GGAAACTCTTTCTGTTCAGCCG 59.776 50.000 0.00 0.00 39.59 5.52
332 333 2.554462 GGGAAACTCTTTCTGTTCAGCC 59.446 50.000 0.00 0.00 39.59 4.85
333 334 3.214328 TGGGAAACTCTTTCTGTTCAGC 58.786 45.455 0.00 0.00 39.59 4.26
334 335 5.835113 TTTGGGAAACTCTTTCTGTTCAG 57.165 39.130 0.00 0.00 39.59 3.02
335 336 5.451798 GCATTTGGGAAACTCTTTCTGTTCA 60.452 40.000 0.00 0.00 39.59 3.18
336 337 4.984785 GCATTTGGGAAACTCTTTCTGTTC 59.015 41.667 0.00 0.00 39.59 3.18
337 338 4.202253 GGCATTTGGGAAACTCTTTCTGTT 60.202 41.667 0.00 0.00 39.59 3.16
338 339 3.321968 GGCATTTGGGAAACTCTTTCTGT 59.678 43.478 0.00 0.00 39.59 3.41
339 340 3.321682 TGGCATTTGGGAAACTCTTTCTG 59.678 43.478 0.00 0.00 39.59 3.02
340 341 3.575805 TGGCATTTGGGAAACTCTTTCT 58.424 40.909 0.00 0.00 39.59 2.52
341 342 4.058124 GTTGGCATTTGGGAAACTCTTTC 58.942 43.478 0.00 0.00 38.94 2.62
342 343 3.181455 GGTTGGCATTTGGGAAACTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
343 344 2.368548 GGTTGGCATTTGGGAAACTCTT 59.631 45.455 0.00 0.00 0.00 2.85
344 345 1.970640 GGTTGGCATTTGGGAAACTCT 59.029 47.619 0.00 0.00 0.00 3.24
345 346 1.001974 GGGTTGGCATTTGGGAAACTC 59.998 52.381 0.00 0.00 0.00 3.01
346 347 1.055849 GGGTTGGCATTTGGGAAACT 58.944 50.000 0.00 0.00 0.00 2.66
347 348 1.055849 AGGGTTGGCATTTGGGAAAC 58.944 50.000 0.00 0.00 0.00 2.78
348 349 1.813102 AAGGGTTGGCATTTGGGAAA 58.187 45.000 0.00 0.00 0.00 3.13
349 350 1.419387 CAAAGGGTTGGCATTTGGGAA 59.581 47.619 3.86 0.00 31.73 3.97
350 351 1.055040 CAAAGGGTTGGCATTTGGGA 58.945 50.000 3.86 0.00 31.73 4.37
351 352 1.002315 CTCAAAGGGTTGGCATTTGGG 59.998 52.381 10.45 4.46 35.21 4.12
352 353 1.608801 GCTCAAAGGGTTGGCATTTGG 60.609 52.381 10.45 4.28 35.21 3.28
353 354 1.799544 GCTCAAAGGGTTGGCATTTG 58.200 50.000 5.19 5.19 35.29 2.32
369 370 2.624264 ACGCAACAACGTTCGCTC 59.376 55.556 0.00 0.00 45.75 5.03
545 558 2.436115 GTACCTGCGGTTGGAGCC 60.436 66.667 5.57 0.00 37.09 4.70
632 646 4.077188 GCGACGCAGACAGTTGCC 62.077 66.667 16.42 0.00 41.80 4.52
862 887 6.093771 TGGTACAACACAAACGACAAATTAGT 59.906 34.615 0.00 0.00 31.92 2.24
884 912 2.100087 CTGTGTTTAAACGCCCTTTGGT 59.900 45.455 24.99 0.00 38.61 3.67
893 921 4.523853 TGTAGCACACTGTGTTTAAACG 57.476 40.909 11.40 0.00 35.75 3.60
921 957 3.118519 GGCCTGATCATTTGGAGCATTTT 60.119 43.478 3.71 0.00 41.87 1.82
922 958 2.433239 GGCCTGATCATTTGGAGCATTT 59.567 45.455 3.71 0.00 41.87 2.32
924 960 1.063492 TGGCCTGATCATTTGGAGCAT 60.063 47.619 3.32 0.00 41.87 3.79
947 983 8.718158 ACTATCAGTATCAGAGGATTCATGAA 57.282 34.615 11.26 11.26 34.89 2.57
977 1013 1.302511 AGCTGTACCACCCAAAGCG 60.303 57.895 0.00 0.00 38.90 4.68
1134 1173 1.072331 GGACCTGAAAGAACAGCCTCA 59.928 52.381 0.00 0.00 36.67 3.86
1214 1253 3.069729 GCGGAGGGAGTACTAATCACATT 59.930 47.826 0.00 0.00 0.00 2.71
1218 1257 2.447408 TGCGGAGGGAGTACTAATCA 57.553 50.000 0.00 0.00 0.00 2.57
1223 1262 2.226962 TAGTTTGCGGAGGGAGTACT 57.773 50.000 0.00 0.00 0.00 2.73
1224 1263 3.538634 ATTAGTTTGCGGAGGGAGTAC 57.461 47.619 0.00 0.00 0.00 2.73
1225 1264 6.779049 TCTTATATTAGTTTGCGGAGGGAGTA 59.221 38.462 0.00 0.00 0.00 2.59
1226 1265 5.601313 TCTTATATTAGTTTGCGGAGGGAGT 59.399 40.000 0.00 0.00 0.00 3.85
1227 1266 6.097915 TCTTATATTAGTTTGCGGAGGGAG 57.902 41.667 0.00 0.00 0.00 4.30
1228 1267 5.510861 GCTCTTATATTAGTTTGCGGAGGGA 60.511 44.000 0.00 0.00 0.00 4.20
1229 1268 4.691216 GCTCTTATATTAGTTTGCGGAGGG 59.309 45.833 0.00 0.00 0.00 4.30
1230 1269 4.386049 CGCTCTTATATTAGTTTGCGGAGG 59.614 45.833 13.90 0.00 38.74 4.30
1231 1270 4.982916 ACGCTCTTATATTAGTTTGCGGAG 59.017 41.667 20.46 0.00 45.26 4.63
1232 1271 4.940463 ACGCTCTTATATTAGTTTGCGGA 58.060 39.130 20.46 0.00 45.26 5.54
1233 1272 5.652744 AACGCTCTTATATTAGTTTGCGG 57.347 39.130 20.46 10.13 45.26 5.69
1234 1273 8.057812 TCTAAACGCTCTTATATTAGTTTGCG 57.942 34.615 17.42 17.42 46.21 4.85
1245 1284 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
1246 1285 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
1247 1286 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
1248 1287 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
1261 1300 8.247562 AAGAGTGCTTAGATCACTAAAGTAGTG 58.752 37.037 8.79 8.79 44.09 2.74
1262 1301 7.948034 AGAGTGCTTAGATCACTAAAGTAGT 57.052 36.000 0.00 0.00 44.09 2.73
1279 1318 8.643324 CCCTCTGTAAACTAATATAAGAGTGCT 58.357 37.037 0.00 0.00 0.00 4.40
1280 1319 8.639761 TCCCTCTGTAAACTAATATAAGAGTGC 58.360 37.037 0.00 0.00 0.00 4.40
1282 1321 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
1288 1327 9.710818 TGAAGTACTCCCTCTGTAAACTAATAT 57.289 33.333 0.00 0.00 0.00 1.28
1289 1328 9.537852 TTGAAGTACTCCCTCTGTAAACTAATA 57.462 33.333 0.00 0.00 0.00 0.98
1290 1329 8.431910 TTGAAGTACTCCCTCTGTAAACTAAT 57.568 34.615 0.00 0.00 0.00 1.73
1291 1330 7.844493 TTGAAGTACTCCCTCTGTAAACTAA 57.156 36.000 0.00 0.00 0.00 2.24
1292 1331 7.844493 TTTGAAGTACTCCCTCTGTAAACTA 57.156 36.000 0.00 0.00 0.00 2.24
1293 1332 6.742559 TTTGAAGTACTCCCTCTGTAAACT 57.257 37.500 0.00 0.00 0.00 2.66
1294 1333 7.981102 AATTTGAAGTACTCCCTCTGTAAAC 57.019 36.000 0.00 0.00 0.00 2.01
1295 1334 7.996644 ACAAATTTGAAGTACTCCCTCTGTAAA 59.003 33.333 24.64 0.00 0.00 2.01
1296 1335 7.514721 ACAAATTTGAAGTACTCCCTCTGTAA 58.485 34.615 24.64 0.00 0.00 2.41
1297 1336 7.074653 ACAAATTTGAAGTACTCCCTCTGTA 57.925 36.000 24.64 0.00 0.00 2.74
1298 1337 5.941788 ACAAATTTGAAGTACTCCCTCTGT 58.058 37.500 24.64 0.00 0.00 3.41
1299 1338 7.162082 AGTACAAATTTGAAGTACTCCCTCTG 58.838 38.462 24.64 0.00 43.50 3.35
1300 1339 7.317722 AGTACAAATTTGAAGTACTCCCTCT 57.682 36.000 24.64 0.00 43.50 3.69
1301 1340 7.981102 AAGTACAAATTTGAAGTACTCCCTC 57.019 36.000 24.64 0.00 45.49 4.30
1302 1341 7.778382 ACAAAGTACAAATTTGAAGTACTCCCT 59.222 33.333 24.64 5.05 45.49 4.20
1303 1342 7.937649 ACAAAGTACAAATTTGAAGTACTCCC 58.062 34.615 24.64 0.00 45.49 4.30
1304 1343 9.797556 AAACAAAGTACAAATTTGAAGTACTCC 57.202 29.630 24.64 3.30 45.49 3.85
1337 1377 4.035441 CCTTCCTGCAAAATTGTTGTTTGG 59.965 41.667 0.00 0.00 36.64 3.28
1348 1388 2.014010 AGCAATCCCTTCCTGCAAAA 57.986 45.000 0.00 0.00 38.58 2.44
1508 1548 6.727824 ATGTACATGCACTCTTTCAAGTAC 57.272 37.500 7.78 0.00 37.68 2.73
1509 1549 7.382898 TGTATGTACATGCACTCTTTCAAGTA 58.617 34.615 21.01 0.00 0.00 2.24
1510 1550 6.230472 TGTATGTACATGCACTCTTTCAAGT 58.770 36.000 21.01 0.00 0.00 3.16
1674 1715 6.479990 TCTCCTGTAAATTCAATATGCAGACG 59.520 38.462 0.00 0.00 0.00 4.18
1844 1885 6.603599 GGACAGCTAAAAGGAACTCCATAAAT 59.396 38.462 0.00 0.00 38.49 1.40
2435 2512 3.521560 TGAAACACGGCAGATTAGCTAG 58.478 45.455 0.00 0.00 34.17 3.42
2448 2525 3.670055 GGTCTGCATTTCATTGAAACACG 59.330 43.478 13.80 7.21 34.23 4.49
2452 2529 5.012239 AGCTAGGTCTGCATTTCATTGAAA 58.988 37.500 13.88 13.88 35.94 2.69
3169 3425 1.203441 ACCAGCAGAAGAGATGCCCA 61.203 55.000 0.00 0.00 44.97 5.36
3254 3512 9.211485 CTGACAAGGAGCAAAAATAAAATCATT 57.789 29.630 0.00 0.00 0.00 2.57
3684 3948 7.577303 TCAATACCCTGAAAAGATGAATAGCT 58.423 34.615 0.00 0.00 0.00 3.32
3894 4159 3.821033 GAGAAGCCTCAGTTTTGCCTTTA 59.179 43.478 0.00 0.00 39.24 1.85
4025 4290 2.917701 TGCATTGCGATGTTTGGTAG 57.082 45.000 15.45 0.00 35.63 3.18
4366 4631 3.267893 CGAACACCGCATACGTTTG 57.732 52.632 0.00 0.00 37.70 2.93
4384 4649 1.285023 CCAAGACTTGCAGCACAGC 59.715 57.895 9.85 0.00 0.00 4.40
4391 4656 3.608316 AAAGCAAAACCAAGACTTGCA 57.392 38.095 9.85 0.00 46.26 4.08
4422 4687 9.650539 GAGCATGTACAGTCAATATCTCATAAT 57.349 33.333 0.33 0.00 0.00 1.28
4445 4710 8.850452 GTGCAAGTTAATACAAAAACATAGAGC 58.150 33.333 0.00 0.00 0.00 4.09
4446 4711 9.341899 GGTGCAAGTTAATACAAAAACATAGAG 57.658 33.333 0.00 0.00 0.00 2.43
4450 4715 8.367156 AGATGGTGCAAGTTAATACAAAAACAT 58.633 29.630 0.00 0.00 0.00 2.71
4453 4718 7.655328 CCAAGATGGTGCAAGTTAATACAAAAA 59.345 33.333 0.00 0.00 31.35 1.94
4475 4740 6.531948 CGAATGAGGAGTTTTACTAGACCAAG 59.468 42.308 0.00 0.00 0.00 3.61
4492 4757 1.337167 TGAGCTGTCACACGAATGAGG 60.337 52.381 0.00 0.00 0.00 3.86
4534 4799 3.566322 TCACGATTCCAAAATTCCGTGTT 59.434 39.130 0.00 0.00 40.86 3.32
4551 4816 3.503827 ATGCTTACGTCATCTTCACGA 57.496 42.857 0.00 0.00 39.75 4.35
4639 4904 6.314896 GCAAGTATGACTTTGAGCAGTCTTAT 59.685 38.462 3.85 0.00 43.32 1.73
4647 4912 7.439356 TCACTATATGCAAGTATGACTTTGAGC 59.561 37.037 0.00 0.00 36.03 4.26
4649 4914 9.665719 TTTCACTATATGCAAGTATGACTTTGA 57.334 29.630 0.00 0.00 36.03 2.69
4724 4989 5.747197 GCTTTGAAATGGTGATATTGCTCAG 59.253 40.000 0.00 0.00 0.00 3.35
4736 5001 5.549742 TTTGATGGAAGCTTTGAAATGGT 57.450 34.783 0.00 0.00 0.00 3.55
4783 5048 4.704833 TCAGCACGCTCCAAGGCC 62.705 66.667 0.00 0.00 0.00 5.19
4868 5133 8.960591 CCAATCCTCAAACATTTATGAAGTACT 58.039 33.333 0.00 0.00 0.00 2.73
4869 5134 8.956426 TCCAATCCTCAAACATTTATGAAGTAC 58.044 33.333 0.00 0.00 0.00 2.73
4876 5141 9.927081 AGTTCTATCCAATCCTCAAACATTTAT 57.073 29.630 0.00 0.00 0.00 1.40
4937 5226 4.818546 GCTGCACAGAGAACACCATATAAT 59.181 41.667 0.81 0.00 0.00 1.28
4950 5239 0.873054 CCAAGACTTGCTGCACAGAG 59.127 55.000 9.85 0.00 0.00 3.35
5002 5291 8.860088 TCAGTCTTGCAGATTAGCTATTATACA 58.140 33.333 0.00 0.00 34.99 2.29
5017 5306 4.497006 CCAGTTGAAGTTTCAGTCTTGCAG 60.497 45.833 0.00 0.00 38.61 4.41
5018 5307 3.378112 CCAGTTGAAGTTTCAGTCTTGCA 59.622 43.478 0.00 0.00 38.61 4.08
5019 5308 3.378427 ACCAGTTGAAGTTTCAGTCTTGC 59.622 43.478 0.00 0.00 38.61 4.01
5020 5309 4.635765 TCACCAGTTGAAGTTTCAGTCTTG 59.364 41.667 0.00 0.00 38.61 3.02
5021 5310 4.843728 TCACCAGTTGAAGTTTCAGTCTT 58.156 39.130 0.00 0.00 38.61 3.01
5022 5311 4.487714 TCACCAGTTGAAGTTTCAGTCT 57.512 40.909 0.00 0.00 38.61 3.24
5023 5312 4.576463 ACATCACCAGTTGAAGTTTCAGTC 59.424 41.667 0.00 0.00 37.92 3.51
5024 5313 4.526970 ACATCACCAGTTGAAGTTTCAGT 58.473 39.130 0.00 0.00 37.92 3.41
5231 5715 4.156373 TGTGCACAATGTAATGAGTGATGG 59.844 41.667 19.28 0.00 35.81 3.51
5233 5717 5.005740 AGTGTGCACAATGTAATGAGTGAT 58.994 37.500 23.59 0.00 35.81 3.06
5409 5896 0.323629 TCTGGTTGGTAAGGGCTTCG 59.676 55.000 0.00 0.00 0.00 3.79
5484 5971 0.881118 CTGCTGGCTTTTCCGCTTTA 59.119 50.000 0.00 0.00 37.80 1.85
5518 6005 0.171679 TCGGTTTTCGCGAGCTCATA 59.828 50.000 15.40 0.00 39.05 2.15
5520 6007 1.733041 CTCGGTTTTCGCGAGCTCA 60.733 57.895 15.40 0.00 39.05 4.26
5556 6043 2.783135 TCAGTTGAAGCCATGGTCTTC 58.217 47.619 28.06 28.06 40.13 2.87
5617 6104 1.132643 TCTTCTCGCTTCTTCGCCTAC 59.867 52.381 0.00 0.00 0.00 3.18
5621 6108 1.851666 CATCTCTTCTCGCTTCTTCGC 59.148 52.381 0.00 0.00 0.00 4.70
5715 6202 1.271379 GCCCTAGAAGAACTGGTTGCA 60.271 52.381 0.00 0.00 0.00 4.08
5828 6315 7.656137 TCAACATGTAAAACAGAGAAGTAGTCC 59.344 37.037 0.00 0.00 0.00 3.85
5920 6407 4.898320 TCTTTCATTGAGAAGCAGCACTA 58.102 39.130 0.00 0.00 37.57 2.74
5968 6456 7.721399 ACATTCCTACTGTGAAAGTTTGATTCT 59.279 33.333 0.00 0.00 40.56 2.40
6009 6497 5.707298 AGCAGCAGTGTTTGATTACTGTAAT 59.293 36.000 12.62 12.62 44.66 1.89
6068 6558 3.849574 TCCATTCCACTCCAATCCACTTA 59.150 43.478 0.00 0.00 0.00 2.24
6137 6627 3.634397 TCCATGACAAATGAGAGGGAC 57.366 47.619 0.00 0.00 0.00 4.46
6156 6646 6.555812 AATCTTTTAGGTCTTGTTCGGTTC 57.444 37.500 0.00 0.00 0.00 3.62
6280 6880 9.809096 GTCACAACTTTTCTCAGAGATATGATA 57.191 33.333 0.00 0.00 0.00 2.15
6281 6881 8.316946 TGTCACAACTTTTCTCAGAGATATGAT 58.683 33.333 0.00 0.00 0.00 2.45
6282 6882 7.670364 TGTCACAACTTTTCTCAGAGATATGA 58.330 34.615 0.00 0.00 0.00 2.15
6283 6883 7.895975 TGTCACAACTTTTCTCAGAGATATG 57.104 36.000 0.00 1.73 0.00 1.78
6440 7043 0.824759 GTAGGTGGTAGCCCTGACAG 59.175 60.000 11.01 0.00 33.35 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.