Multiple sequence alignment - TraesCS6D01G319500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G319500 chr6D 100.000 7793 0 0 1 7793 427478418 427486210 0.000000e+00 14392.0
1 TraesCS6D01G319500 chr6D 90.318 692 43 11 7125 7793 427967077 427966387 0.000000e+00 885.0
2 TraesCS6D01G319500 chr6D 88.352 704 45 16 7125 7793 427492438 427493139 0.000000e+00 811.0
3 TraesCS6D01G319500 chr6D 91.398 93 8 0 7005 7097 427967167 427967075 2.280000e-25 128.0
4 TraesCS6D01G319500 chr6A 95.972 2532 63 17 4577 7097 572136346 572138849 0.000000e+00 4074.0
5 TraesCS6D01G319500 chr6A 97.451 1648 40 2 2864 4510 572134700 572136346 0.000000e+00 2809.0
6 TraesCS6D01G319500 chr6A 86.858 974 75 24 86 1039 572132369 572133309 0.000000e+00 1040.0
7 TraesCS6D01G319500 chr6A 89.497 676 49 13 7125 7793 572138847 572139507 0.000000e+00 835.0
8 TraesCS6D01G319500 chr6A 85.561 838 46 16 1269 2071 572133672 572134469 0.000000e+00 808.0
9 TraesCS6D01G319500 chr6A 79.959 973 147 26 3076 4033 158907243 158908182 0.000000e+00 673.0
10 TraesCS6D01G319500 chr6A 94.286 140 2 1 2106 2245 572134554 572134687 7.920000e-50 209.0
11 TraesCS6D01G319500 chr6A 96.825 63 2 0 25 87 204924134 204924196 1.070000e-18 106.0
12 TraesCS6D01G319500 chr6B 95.907 2248 81 5 5210 7446 643264124 643266371 0.000000e+00 3631.0
13 TraesCS6D01G319500 chr6B 95.547 2201 76 9 2615 4805 643261937 643264125 0.000000e+00 3502.0
14 TraesCS6D01G319500 chr6B 83.106 1906 265 30 4801 6681 212627187 212625314 0.000000e+00 1683.0
15 TraesCS6D01G319500 chr6B 86.974 975 87 20 86 1036 643259120 643260078 0.000000e+00 1061.0
16 TraesCS6D01G319500 chr6B 87.097 713 56 21 1380 2072 643260636 643261332 0.000000e+00 774.0
17 TraesCS6D01G319500 chr6B 91.648 455 27 5 7347 7793 643430033 643430484 3.090000e-173 619.0
18 TraesCS6D01G319500 chr6B 78.717 935 154 26 3089 4012 212629274 212628374 4.050000e-162 582.0
19 TraesCS6D01G319500 chr6B 90.937 331 22 3 2069 2398 643261396 643261719 9.280000e-119 438.0
20 TraesCS6D01G319500 chr6B 95.135 185 8 1 2430 2614 643261722 643261905 2.750000e-74 291.0
21 TraesCS6D01G319500 chr6B 87.685 203 12 6 1060 1252 643260240 643260439 2.830000e-54 224.0
22 TraesCS6D01G319500 chr6B 84.868 152 18 2 4250 4397 88219474 88219324 1.750000e-31 148.0
23 TraesCS6D01G319500 chr6B 90.361 83 5 2 7704 7786 643266684 643266763 1.070000e-18 106.0
24 TraesCS6D01G319500 chr6B 89.744 78 4 4 1249 1324 643260555 643260630 6.440000e-16 97.1
25 TraesCS6D01G319500 chrUn 85.049 1846 250 16 4964 6794 108321537 108323371 0.000000e+00 1857.0
26 TraesCS6D01G319500 chrUn 76.824 233 42 9 4250 4481 30025004 30024783 3.820000e-23 121.0
27 TraesCS6D01G319500 chr5A 85.022 1796 245 20 5014 6794 705844214 705842428 0.000000e+00 1805.0
28 TraesCS6D01G319500 chr5A 83.410 1730 266 15 5080 6797 457435700 457437420 0.000000e+00 1585.0
29 TraesCS6D01G319500 chr5A 76.829 1476 232 63 2613 4032 457431854 457433275 0.000000e+00 730.0
30 TraesCS6D01G319500 chr5A 87.313 134 14 3 7047 7180 115619872 115619742 4.870000e-32 150.0
31 TraesCS6D01G319500 chr5A 77.143 245 42 11 4250 4491 706540122 706539889 6.350000e-26 130.0
32 TraesCS6D01G319500 chr5A 96.491 57 2 0 31 87 664912452 664912396 2.310000e-15 95.3
33 TraesCS6D01G319500 chr4B 84.911 1796 247 20 5014 6794 665877229 665875443 0.000000e+00 1794.0
34 TraesCS6D01G319500 chr4B 85.395 1657 228 10 5145 6794 625975191 625976840 0.000000e+00 1707.0
35 TraesCS6D01G319500 chr4B 76.297 1426 235 62 2653 4035 625972835 625974200 0.000000e+00 665.0
36 TraesCS6D01G319500 chr4B 77.167 600 103 16 4250 4839 625974594 625975169 1.260000e-82 318.0
37 TraesCS6D01G319500 chr4B 77.205 601 102 18 4250 4839 665558025 665558601 1.260000e-82 318.0
38 TraesCS6D01G319500 chr4B 76.923 247 39 14 4243 4486 667615507 667615738 2.950000e-24 124.0
39 TraesCS6D01G319500 chr4B 97.059 34 0 1 4091 4123 78611532 78611499 1.000000e-03 56.5
40 TraesCS6D01G319500 chr3D 82.076 2081 312 33 4733 6797 561375414 561377449 0.000000e+00 1720.0
41 TraesCS6D01G319500 chr5D 83.630 1741 263 16 5070 6797 355203507 355205238 0.000000e+00 1616.0
42 TraesCS6D01G319500 chr5D 76.829 1476 232 64 2613 4032 355199481 355200902 0.000000e+00 730.0
43 TraesCS6D01G319500 chr5D 100.000 30 0 0 4091 4120 233752429 233752400 1.000000e-03 56.5
44 TraesCS6D01G319500 chr5B 79.855 968 139 33 3094 4032 419996010 419996950 0.000000e+00 656.0
45 TraesCS6D01G319500 chr3A 75.724 1071 198 33 2757 3809 697259128 697260154 1.520000e-131 481.0
46 TraesCS6D01G319500 chr2A 96.667 60 2 0 28 87 73537546 73537605 4.980000e-17 100.0
47 TraesCS6D01G319500 chr7A 100.000 28 0 0 924 951 36885220 36885193 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G319500 chr6D 427478418 427486210 7792 False 14392.000000 14392 100.000000 1 7793 1 chr6D.!!$F1 7792
1 TraesCS6D01G319500 chr6D 427492438 427493139 701 False 811.000000 811 88.352000 7125 7793 1 chr6D.!!$F2 668
2 TraesCS6D01G319500 chr6D 427966387 427967167 780 True 506.500000 885 90.858000 7005 7793 2 chr6D.!!$R1 788
3 TraesCS6D01G319500 chr6A 572132369 572139507 7138 False 1629.166667 4074 91.604167 86 7793 6 chr6A.!!$F3 7707
4 TraesCS6D01G319500 chr6A 158907243 158908182 939 False 673.000000 673 79.959000 3076 4033 1 chr6A.!!$F1 957
5 TraesCS6D01G319500 chr6B 212625314 212629274 3960 True 1132.500000 1683 80.911500 3089 6681 2 chr6B.!!$R2 3592
6 TraesCS6D01G319500 chr6B 643259120 643266763 7643 False 1124.900000 3631 91.043000 86 7786 9 chr6B.!!$F2 7700
7 TraesCS6D01G319500 chrUn 108321537 108323371 1834 False 1857.000000 1857 85.049000 4964 6794 1 chrUn.!!$F1 1830
8 TraesCS6D01G319500 chr5A 705842428 705844214 1786 True 1805.000000 1805 85.022000 5014 6794 1 chr5A.!!$R3 1780
9 TraesCS6D01G319500 chr5A 457431854 457437420 5566 False 1157.500000 1585 80.119500 2613 6797 2 chr5A.!!$F1 4184
10 TraesCS6D01G319500 chr4B 665875443 665877229 1786 True 1794.000000 1794 84.911000 5014 6794 1 chr4B.!!$R2 1780
11 TraesCS6D01G319500 chr4B 625972835 625976840 4005 False 896.666667 1707 79.619667 2653 6794 3 chr4B.!!$F3 4141
12 TraesCS6D01G319500 chr4B 665558025 665558601 576 False 318.000000 318 77.205000 4250 4839 1 chr4B.!!$F1 589
13 TraesCS6D01G319500 chr3D 561375414 561377449 2035 False 1720.000000 1720 82.076000 4733 6797 1 chr3D.!!$F1 2064
14 TraesCS6D01G319500 chr5D 355199481 355205238 5757 False 1173.000000 1616 80.229500 2613 6797 2 chr5D.!!$F1 4184
15 TraesCS6D01G319500 chr5B 419996010 419996950 940 False 656.000000 656 79.855000 3094 4032 1 chr5B.!!$F1 938
16 TraesCS6D01G319500 chr3A 697259128 697260154 1026 False 481.000000 481 75.724000 2757 3809 1 chr3A.!!$F1 1052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
684 694 0.033208 TTTGGCACATCTCCCCATCC 60.033 55.000 0.00 0.0 39.30 3.51 F
1044 1077 0.041833 CCTCTCTTGTCCTCCTCCCA 59.958 60.000 0.00 0.0 0.00 4.37 F
1050 1083 0.193574 TTGTCCTCCTCCCACTTCCT 59.806 55.000 0.00 0.0 0.00 3.36 F
1052 1085 0.252284 GTCCTCCTCCCACTTCCTGA 60.252 60.000 0.00 0.0 0.00 3.86 F
2385 2816 0.316841 TGTTGCTTCCGATTTTGGCC 59.683 50.000 0.00 0.0 0.00 5.36 F
3818 4398 0.538584 TGCAGGCACTAGGTGATGAG 59.461 55.000 1.57 0.0 36.02 2.90 F
3851 4434 0.898320 ATTGCTCTACGTCTGGCTGT 59.102 50.000 0.00 0.0 0.00 4.40 F
4561 7367 4.341806 TGTATGGTTCAATCCCATTCATGC 59.658 41.667 0.00 0.0 42.63 4.06 F
5707 8703 1.625818 GGAAGCGATATGGAGGTGGAT 59.374 52.381 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 2806 0.322456 TGGAGACCAGGCCAAAATCG 60.322 55.000 5.01 0.0 0.00 3.34 R
2385 2816 2.031012 TTGCGCTGTGGAGACCAG 59.969 61.111 9.73 0.0 32.34 4.00 R
2575 3006 2.536365 GCATGTTCAATGCCATGTCTG 58.464 47.619 12.11 0.0 40.42 3.51 R
2975 3462 3.524541 CAAAACATCAAGCTAATGCCCC 58.475 45.455 8.53 0.0 40.80 5.80 R
3851 4434 0.680618 CTTGAACATTTGGGCAGGCA 59.319 50.000 0.00 0.0 0.00 4.75 R
4651 7479 1.003233 CGCCTTCCTAGGAAAGGTGTT 59.997 52.381 28.12 0.0 46.62 3.32 R
4762 7598 1.226323 CTCTTCATGCTGCTTGCGC 60.226 57.895 10.39 0.0 46.63 6.09 R
6483 9479 0.478072 AAACCACTGCCCTCATGTGA 59.522 50.000 0.00 0.0 33.95 3.58 R
7470 10510 1.002134 ACCAATCCAACCGCTCCTG 60.002 57.895 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.420628 TTTTTCTGCTCGCAATGTGG 57.579 45.000 0.00 0.00 0.00 4.17
30 31 1.603456 TTTTCTGCTCGCAATGTGGA 58.397 45.000 0.00 0.00 0.00 4.02
31 32 1.603456 TTTCTGCTCGCAATGTGGAA 58.397 45.000 0.00 0.00 0.00 3.53
32 33 1.603456 TTCTGCTCGCAATGTGGAAA 58.397 45.000 0.00 0.00 0.00 3.13
33 34 1.603456 TCTGCTCGCAATGTGGAAAA 58.397 45.000 0.00 0.00 0.00 2.29
34 35 2.161855 TCTGCTCGCAATGTGGAAAAT 58.838 42.857 0.00 0.00 0.00 1.82
35 36 2.095110 TCTGCTCGCAATGTGGAAAATG 60.095 45.455 0.00 0.00 0.00 2.32
36 37 1.885233 TGCTCGCAATGTGGAAAATGA 59.115 42.857 0.00 0.00 0.00 2.57
37 38 2.253603 GCTCGCAATGTGGAAAATGAC 58.746 47.619 0.00 0.00 0.00 3.06
38 39 2.508867 CTCGCAATGTGGAAAATGACG 58.491 47.619 0.00 0.00 0.00 4.35
39 40 1.876799 TCGCAATGTGGAAAATGACGT 59.123 42.857 0.00 0.00 0.00 4.34
40 41 1.978097 CGCAATGTGGAAAATGACGTG 59.022 47.619 0.00 0.00 0.00 4.49
41 42 2.327568 GCAATGTGGAAAATGACGTGG 58.672 47.619 0.00 0.00 0.00 4.94
42 43 2.327568 CAATGTGGAAAATGACGTGGC 58.672 47.619 0.00 0.00 0.00 5.01
43 44 1.614996 ATGTGGAAAATGACGTGGCA 58.385 45.000 0.00 0.00 0.00 4.92
44 45 1.614996 TGTGGAAAATGACGTGGCAT 58.385 45.000 0.00 0.00 0.00 4.40
45 46 2.784347 TGTGGAAAATGACGTGGCATA 58.216 42.857 0.00 0.00 0.00 3.14
46 47 2.746904 TGTGGAAAATGACGTGGCATAG 59.253 45.455 0.00 0.00 0.00 2.23
47 48 1.742831 TGGAAAATGACGTGGCATAGC 59.257 47.619 0.00 0.00 0.00 2.97
48 49 2.017049 GGAAAATGACGTGGCATAGCT 58.983 47.619 0.00 0.00 0.00 3.32
49 50 2.032178 GGAAAATGACGTGGCATAGCTC 59.968 50.000 0.00 0.00 0.00 4.09
50 51 2.401583 AAATGACGTGGCATAGCTCA 57.598 45.000 0.00 0.00 0.00 4.26
51 52 1.945387 AATGACGTGGCATAGCTCAG 58.055 50.000 0.00 0.00 0.00 3.35
52 53 0.531532 ATGACGTGGCATAGCTCAGC 60.532 55.000 0.00 0.00 0.00 4.26
53 54 2.202797 ACGTGGCATAGCTCAGCG 60.203 61.111 0.00 0.00 0.00 5.18
54 55 2.104928 CGTGGCATAGCTCAGCGA 59.895 61.111 0.00 0.00 0.00 4.93
55 56 1.948138 CGTGGCATAGCTCAGCGAG 60.948 63.158 0.00 1.80 0.00 5.03
64 65 3.570638 CTCAGCGAGCGCCCATTG 61.571 66.667 11.66 3.40 43.17 2.82
75 76 2.748251 CCCATTGCGCCACCGTTA 60.748 61.111 4.18 0.00 36.67 3.18
76 77 2.336478 CCCATTGCGCCACCGTTAA 61.336 57.895 4.18 0.00 36.67 2.01
77 78 1.662438 CCCATTGCGCCACCGTTAAT 61.662 55.000 4.18 0.00 36.67 1.40
78 79 0.525242 CCATTGCGCCACCGTTAATG 60.525 55.000 4.18 6.15 39.05 1.90
79 80 0.525242 CATTGCGCCACCGTTAATGG 60.525 55.000 12.41 12.41 37.43 3.16
80 81 1.662438 ATTGCGCCACCGTTAATGGG 61.662 55.000 18.06 6.33 37.73 4.00
81 82 2.748647 GCGCCACCGTTAATGGGT 60.749 61.111 18.06 6.99 37.73 4.51
82 83 2.337246 GCGCCACCGTTAATGGGTT 61.337 57.895 18.06 0.00 37.73 4.11
83 84 1.504446 CGCCACCGTTAATGGGTTG 59.496 57.895 18.06 7.88 37.73 3.77
84 85 1.238625 CGCCACCGTTAATGGGTTGT 61.239 55.000 18.06 0.00 37.73 3.32
85 86 1.823797 GCCACCGTTAATGGGTTGTA 58.176 50.000 18.06 0.00 37.73 2.41
86 87 2.371306 GCCACCGTTAATGGGTTGTAT 58.629 47.619 18.06 0.00 37.73 2.29
87 88 2.756207 GCCACCGTTAATGGGTTGTATT 59.244 45.455 18.06 0.00 37.73 1.89
88 89 3.193903 GCCACCGTTAATGGGTTGTATTT 59.806 43.478 18.06 0.00 37.73 1.40
89 90 4.675933 GCCACCGTTAATGGGTTGTATTTC 60.676 45.833 18.06 0.00 37.73 2.17
90 91 4.437659 CCACCGTTAATGGGTTGTATTTCG 60.438 45.833 18.06 0.00 34.97 3.46
92 93 3.487879 CCGTTAATGGGTTGTATTTCGCC 60.488 47.826 5.74 0.00 0.00 5.54
103 104 0.396435 TATTTCGCCCCATGCTCGAT 59.604 50.000 3.65 0.00 38.05 3.59
105 106 4.916293 TCGCCCCATGCTCGATGC 62.916 66.667 0.00 0.00 43.25 3.91
118 119 2.202932 GATGCAGCGTCCCGTGAT 60.203 61.111 2.82 0.00 0.00 3.06
128 129 1.597663 CGTCCCGTGATTTCTTATGCC 59.402 52.381 0.00 0.00 0.00 4.40
146 147 2.669569 AATGCTTGGCGCGTCACT 60.670 55.556 15.66 0.00 43.27 3.41
147 148 2.260869 AATGCTTGGCGCGTCACTT 61.261 52.632 15.66 1.47 43.27 3.16
181 184 3.064931 GCGACTGCCACCCTATATTAAC 58.935 50.000 0.00 0.00 33.98 2.01
303 308 8.098286 ACAGTAGTAATTGCATTAACCACACTA 58.902 33.333 0.00 0.00 0.00 2.74
344 350 4.864247 CCCAAGATTTGCCAACTTTAATCG 59.136 41.667 0.00 0.00 33.38 3.34
351 357 7.542130 AGATTTGCCAACTTTAATCGTGAATTC 59.458 33.333 0.00 0.00 33.38 2.17
356 362 6.034898 GCCAACTTTAATCGTGAATTCCATTG 59.965 38.462 2.27 0.00 0.00 2.82
592 600 3.010420 CAGCTAAGTCCAGCCTAAAACC 58.990 50.000 0.00 0.00 42.84 3.27
596 604 0.605589 AGTCCAGCCTAAAACCGTGC 60.606 55.000 0.00 0.00 0.00 5.34
655 665 4.699522 GACGCCTCCACCACCACC 62.700 72.222 0.00 0.00 0.00 4.61
678 688 1.675641 ACCGCTTTGGCACATCTCC 60.676 57.895 0.00 0.00 43.94 3.71
684 694 0.033208 TTTGGCACATCTCCCCATCC 60.033 55.000 0.00 0.00 39.30 3.51
690 700 1.419387 CACATCTCCCCATCCCTCTTC 59.581 57.143 0.00 0.00 0.00 2.87
694 704 1.219213 TCTCCCCATCCCTCTTCTCTC 59.781 57.143 0.00 0.00 0.00 3.20
815 826 2.358737 CCCCAGTGTCCGTTCTGC 60.359 66.667 0.00 0.00 0.00 4.26
946 971 2.361357 CGTCGTCCTCCTCCCACT 60.361 66.667 0.00 0.00 0.00 4.00
999 1024 2.802667 CGATCTTCTGGCGCCAACG 61.803 63.158 32.09 20.38 44.07 4.10
1036 1069 4.340617 TCTCTCTCTTTCCTCTCTTGTCC 58.659 47.826 0.00 0.00 0.00 4.02
1037 1070 4.044065 TCTCTCTCTTTCCTCTCTTGTCCT 59.956 45.833 0.00 0.00 0.00 3.85
1038 1071 4.340617 TCTCTCTTTCCTCTCTTGTCCTC 58.659 47.826 0.00 0.00 0.00 3.71
1040 1073 3.076785 TCTCTTTCCTCTCTTGTCCTCCT 59.923 47.826 0.00 0.00 0.00 3.69
1041 1074 3.436243 TCTTTCCTCTCTTGTCCTCCTC 58.564 50.000 0.00 0.00 0.00 3.71
1042 1075 2.239681 TTCCTCTCTTGTCCTCCTCC 57.760 55.000 0.00 0.00 0.00 4.30
1043 1076 0.336737 TCCTCTCTTGTCCTCCTCCC 59.663 60.000 0.00 0.00 0.00 4.30
1044 1077 0.041833 CCTCTCTTGTCCTCCTCCCA 59.958 60.000 0.00 0.00 0.00 4.37
1045 1078 1.190643 CTCTCTTGTCCTCCTCCCAC 58.809 60.000 0.00 0.00 0.00 4.61
1047 1080 1.150135 TCTCTTGTCCTCCTCCCACTT 59.850 52.381 0.00 0.00 0.00 3.16
1048 1081 1.552792 CTCTTGTCCTCCTCCCACTTC 59.447 57.143 0.00 0.00 0.00 3.01
1050 1083 0.193574 TTGTCCTCCTCCCACTTCCT 59.806 55.000 0.00 0.00 0.00 3.36
1051 1084 0.545309 TGTCCTCCTCCCACTTCCTG 60.545 60.000 0.00 0.00 0.00 3.86
1052 1085 0.252284 GTCCTCCTCCCACTTCCTGA 60.252 60.000 0.00 0.00 0.00 3.86
1053 1086 0.491823 TCCTCCTCCCACTTCCTGAA 59.508 55.000 0.00 0.00 0.00 3.02
1056 1227 1.488393 CTCCTCCCACTTCCTGAATCC 59.512 57.143 0.00 0.00 0.00 3.01
1058 1229 0.548510 CTCCCACTTCCTGAATCCCC 59.451 60.000 0.00 0.00 0.00 4.81
1064 1235 0.324943 CTTCCTGAATCCCCGTGTGT 59.675 55.000 0.00 0.00 0.00 3.72
1072 1243 2.113860 ATCCCCGTGTGTGATTCTTG 57.886 50.000 0.00 0.00 0.00 3.02
1084 1255 7.086376 GTGTGTGATTCTTGTTCTGCATATTT 58.914 34.615 0.00 0.00 0.00 1.40
1106 1278 2.034179 GGGGTTTTCTGGTTTGTTCGAG 59.966 50.000 0.00 0.00 0.00 4.04
1134 1306 8.581057 AGAACATGTAGTATATTCTTGAAGCG 57.419 34.615 0.00 0.00 0.00 4.68
1156 1328 3.976339 CAGACCATGGAGACGGATC 57.024 57.895 21.47 3.07 0.00 3.36
1216 1398 1.984570 CCTGCTCCGTCTCCTTCCA 60.985 63.158 0.00 0.00 0.00 3.53
1217 1399 1.515020 CTGCTCCGTCTCCTTCCAG 59.485 63.158 0.00 0.00 0.00 3.86
1287 1598 5.726308 TCAGTCTCAAATCCTCAATCCCTAA 59.274 40.000 0.00 0.00 0.00 2.69
1349 1661 4.093291 CAAGGCCGAGGCAGCTCT 62.093 66.667 16.65 0.45 44.11 4.09
1350 1662 3.325753 AAGGCCGAGGCAGCTCTT 61.326 61.111 16.65 6.96 44.11 2.85
1351 1663 3.618780 AAGGCCGAGGCAGCTCTTG 62.619 63.158 16.65 0.00 44.11 3.02
1394 1706 0.535328 CCAGCAGCAGCAGCAGATAT 60.535 55.000 12.92 0.00 45.49 1.63
1432 1746 3.443681 TCCTTTTGGATTCTGGCGATTTC 59.556 43.478 0.00 0.00 45.19 2.17
1435 1749 5.467035 TTTTGGATTCTGGCGATTTCTTT 57.533 34.783 0.00 0.00 0.00 2.52
1466 1780 6.929049 TGCTCCATGTTATTAGAATAGAACCG 59.071 38.462 0.00 0.00 0.00 4.44
1550 1864 5.643379 TGTTGTAGGAAATTCATCAAGCC 57.357 39.130 0.00 0.00 0.00 4.35
1560 1877 5.733620 AATTCATCAAGCCTGTGTTGATT 57.266 34.783 0.00 0.00 41.69 2.57
1597 1914 6.855836 TCAGTATCAAAAGCTAAAGCCATTG 58.144 36.000 9.78 9.78 43.38 2.82
1695 2028 2.819608 GAGTGGACTTGCATTTGCCTTA 59.180 45.455 0.00 0.00 41.18 2.69
1770 2104 1.737816 CCATATTGCAGTGGCTGGC 59.262 57.895 2.46 0.00 41.91 4.85
1776 2110 2.282745 GCAGTGGCTGGCTTCCTT 60.283 61.111 2.00 0.00 36.96 3.36
1831 2165 5.985175 TTGGTCATGTATCAGGGGATTAA 57.015 39.130 0.00 0.00 34.89 1.40
1854 2188 2.617308 CCCAATAAGATGCTGCAGTCAG 59.383 50.000 16.64 0.65 43.16 3.51
1857 2191 4.157289 CCAATAAGATGCTGCAGTCAGTTT 59.843 41.667 16.64 13.31 42.29 2.66
1866 2200 3.793492 GCTGCAGTCAGTTTCTCAAAAAC 59.207 43.478 16.64 0.00 42.29 2.43
1887 2222 6.690194 AACATTAGATCCTGCAGTCATTTC 57.310 37.500 13.81 1.97 0.00 2.17
1891 2226 4.414337 AGATCCTGCAGTCATTTCTACC 57.586 45.455 13.81 0.00 0.00 3.18
1916 2251 2.939782 GCGTCTGCGATTTCGACTA 58.060 52.632 3.77 0.00 43.02 2.59
1918 2253 1.852895 GCGTCTGCGATTTCGACTATT 59.147 47.619 3.77 0.00 43.02 1.73
1927 2262 4.730613 GCGATTTCGACTATTGCATTGGTT 60.731 41.667 12.08 0.00 43.02 3.67
1967 2302 3.482833 GTCTCGCTTCGCAGTTACTAATC 59.517 47.826 0.00 0.00 0.00 1.75
1973 2308 4.441079 GCTTCGCAGTTACTAATCCCAGTA 60.441 45.833 0.00 0.00 0.00 2.74
2035 2398 1.003545 CGCCATTGCACATAGCTGTAC 60.004 52.381 0.00 0.00 45.94 2.90
2089 2519 2.284625 TGGTCACGAGCCTCCCAT 60.285 61.111 0.00 0.00 0.00 4.00
2100 2530 1.642762 AGCCTCCCATGGAATTCTGTT 59.357 47.619 15.22 0.00 0.00 3.16
2133 2564 6.140895 GTCAACTATAACGATCATGTGTCTCG 59.859 42.308 0.00 0.64 38.34 4.04
2183 2614 3.122297 GCTAGAGCACTGCATCAGTTAG 58.878 50.000 3.30 0.00 42.59 2.34
2184 2615 2.687700 AGAGCACTGCATCAGTTAGG 57.312 50.000 3.30 0.00 42.59 2.69
2185 2616 1.012841 GAGCACTGCATCAGTTAGGC 58.987 55.000 3.30 0.00 42.59 3.93
2186 2617 0.617413 AGCACTGCATCAGTTAGGCT 59.383 50.000 3.30 0.00 42.59 4.58
2187 2618 1.004044 AGCACTGCATCAGTTAGGCTT 59.996 47.619 3.30 0.00 42.59 4.35
2188 2619 2.237143 AGCACTGCATCAGTTAGGCTTA 59.763 45.455 3.30 0.00 42.59 3.09
2264 2695 1.176527 GCATTTGCTTACTGCCCTGA 58.823 50.000 0.00 0.00 42.00 3.86
2276 2707 1.152756 GCCCTGAACACAACCCTGT 60.153 57.895 0.00 0.00 35.63 4.00
2283 2714 3.885297 CTGAACACAACCCTGTCTTCATT 59.115 43.478 0.00 0.00 39.03 2.57
2333 2764 4.445452 ACAGCTAGTCCATTTTGCATTG 57.555 40.909 0.00 0.00 0.00 2.82
2385 2816 0.316841 TGTTGCTTCCGATTTTGGCC 59.683 50.000 0.00 0.00 0.00 5.36
2398 2829 2.697147 TTTGGCCTGGTCTCCACAGC 62.697 60.000 3.32 0.00 34.65 4.40
2401 2832 4.007644 CCTGGTCTCCACAGCGCA 62.008 66.667 11.47 0.00 34.65 6.09
2403 2834 2.031012 TGGTCTCCACAGCGCAAG 59.969 61.111 11.47 3.78 43.44 4.01
2475 2906 6.992123 TGTAGTATTATGAGGGTGCATTTCTG 59.008 38.462 0.00 0.00 0.00 3.02
2504 2935 5.700846 AGTCTACTCATGTAACACTTCACG 58.299 41.667 0.00 0.00 0.00 4.35
2520 2951 7.132213 ACACTTCACGAAAGATATTGTTTGTG 58.868 34.615 11.10 11.10 38.44 3.33
2570 3001 3.213206 TCTGACACATTGGCACTCTTT 57.787 42.857 0.00 0.00 28.59 2.52
2575 3006 2.362077 ACACATTGGCACTCTTTTGACC 59.638 45.455 0.00 0.00 0.00 4.02
2735 3205 5.220284 CGTATCATCAAGTTGTACTGCAGTG 60.220 44.000 29.57 10.74 0.00 3.66
2825 3311 1.421646 CAACCTGGTCACTTTCCTCCT 59.578 52.381 0.00 0.00 0.00 3.69
2941 3427 1.830477 GGCATCCCCATAACTGCAAAA 59.170 47.619 0.00 0.00 36.34 2.44
3032 3532 7.511028 TGGTGAAGGGGAGTTTGTTAAATAAAT 59.489 33.333 0.00 0.00 0.00 1.40
3112 3624 2.898705 ACTGATTTCGCACTGGAGATC 58.101 47.619 0.00 0.00 0.00 2.75
3328 3851 3.531207 CGCCCTCATCAGCTCCGA 61.531 66.667 0.00 0.00 0.00 4.55
3502 4056 3.680786 GCCAACGGGGAAGCAACC 61.681 66.667 0.00 0.00 40.01 3.77
3818 4398 0.538584 TGCAGGCACTAGGTGATGAG 59.461 55.000 1.57 0.00 36.02 2.90
3842 4425 1.331756 GCATTGGGTGATTGCTCTACG 59.668 52.381 0.00 0.00 33.61 3.51
3851 4434 0.898320 ATTGCTCTACGTCTGGCTGT 59.102 50.000 0.00 0.00 0.00 4.40
4356 5787 9.023962 ACTAATTGCATCAAACATCCTTCTAAA 57.976 29.630 0.00 0.00 0.00 1.85
4561 7367 4.341806 TGTATGGTTCAATCCCATTCATGC 59.658 41.667 0.00 0.00 42.63 4.06
4859 7695 7.485418 TGAAACGACAAAGTTGTACATGTAT 57.515 32.000 9.18 0.00 42.43 2.29
5025 7883 9.171877 AGAAGTCAAGTTCCTATTTCATTGATC 57.828 33.333 0.00 0.00 0.00 2.92
5225 8213 8.339714 CAAGTGTTTTCTAATCTCGGTTTGTTA 58.660 33.333 0.00 0.00 0.00 2.41
5262 8250 6.092670 TGCAGGATTTTCTAAAAGAGATGTCG 59.907 38.462 0.00 0.00 32.88 4.35
5402 8390 7.255801 CCTTCTTTCATGTTAAAGGCACCTTAA 60.256 37.037 1.53 0.00 37.13 1.85
5510 8498 3.958798 CAGGAGATTGCCATTCCAGAAAT 59.041 43.478 0.00 0.00 33.32 2.17
5575 8569 6.149504 ACGATAACAGTTTCGCTCTTTTAC 57.850 37.500 14.14 0.00 38.91 2.01
5650 8646 4.635324 GCTTTGATTCCTTTGGAGAGAGAG 59.365 45.833 0.00 0.00 31.21 3.20
5707 8703 1.625818 GGAAGCGATATGGAGGTGGAT 59.374 52.381 0.00 0.00 0.00 3.41
5756 8752 3.065233 GGTAGCGATGATGAACAAATGCA 59.935 43.478 0.00 0.00 0.00 3.96
6483 9479 0.971386 CTTTGCACAGGCTTGGGATT 59.029 50.000 0.37 0.00 41.91 3.01
6580 9576 1.364626 GACAGGCACGCTGATTGAGG 61.365 60.000 0.00 0.00 0.00 3.86
6869 9873 5.573669 TGTTTAACCGCAACTTCTTTTGTTC 59.426 36.000 0.00 0.00 0.00 3.18
6872 9876 4.547406 ACCGCAACTTCTTTTGTTCTAC 57.453 40.909 0.00 0.00 0.00 2.59
6873 9877 3.942748 ACCGCAACTTCTTTTGTTCTACA 59.057 39.130 0.00 0.00 0.00 2.74
7001 10006 7.480760 AATGGTGAGCACAATAAGGTTAAAT 57.519 32.000 2.75 0.00 0.00 1.40
7043 10048 6.544928 TGAAGCCTATTGTGAGAGATACAA 57.455 37.500 0.00 0.00 41.72 2.41
7066 10071 2.939103 GTGTCTTATGCCGCTTTCATCT 59.061 45.455 0.00 0.00 0.00 2.90
7074 10079 1.668419 CCGCTTTCATCTTGTAGGGG 58.332 55.000 0.00 0.00 34.90 4.79
7094 10099 3.254411 GGGCTTCAAAGTCAGGAAAGAAG 59.746 47.826 0.00 0.00 36.47 2.85
7095 10100 3.885901 GGCTTCAAAGTCAGGAAAGAAGT 59.114 43.478 0.00 0.00 35.96 3.01
7096 10101 5.063880 GGCTTCAAAGTCAGGAAAGAAGTA 58.936 41.667 0.00 0.00 35.96 2.24
7097 10102 5.707764 GGCTTCAAAGTCAGGAAAGAAGTAT 59.292 40.000 0.00 0.00 35.96 2.12
7098 10103 6.348868 GGCTTCAAAGTCAGGAAAGAAGTATG 60.349 42.308 0.00 0.00 35.96 2.39
7099 10104 6.560253 TTCAAAGTCAGGAAAGAAGTATGC 57.440 37.500 0.00 0.00 0.00 3.14
7100 10105 5.003804 TCAAAGTCAGGAAAGAAGTATGCC 58.996 41.667 0.00 0.00 0.00 4.40
7101 10106 4.640771 AAGTCAGGAAAGAAGTATGCCA 57.359 40.909 0.00 0.00 0.00 4.92
7102 10107 4.213564 AGTCAGGAAAGAAGTATGCCAG 57.786 45.455 0.00 0.00 0.00 4.85
7103 10108 3.054802 AGTCAGGAAAGAAGTATGCCAGG 60.055 47.826 0.00 0.00 0.00 4.45
7104 10109 2.912956 TCAGGAAAGAAGTATGCCAGGT 59.087 45.455 0.00 0.00 0.00 4.00
7105 10110 3.330701 TCAGGAAAGAAGTATGCCAGGTT 59.669 43.478 0.00 0.00 0.00 3.50
7106 10111 3.691609 CAGGAAAGAAGTATGCCAGGTTC 59.308 47.826 0.00 0.00 0.00 3.62
7107 10112 3.589288 AGGAAAGAAGTATGCCAGGTTCT 59.411 43.478 0.00 0.00 0.00 3.01
7108 10113 4.043435 AGGAAAGAAGTATGCCAGGTTCTT 59.957 41.667 0.00 0.00 40.23 2.52
7109 10114 5.250774 AGGAAAGAAGTATGCCAGGTTCTTA 59.749 40.000 3.09 0.00 38.10 2.10
7110 10115 5.586643 GGAAAGAAGTATGCCAGGTTCTTAG 59.413 44.000 3.09 0.00 38.10 2.18
7111 10116 4.762289 AGAAGTATGCCAGGTTCTTAGG 57.238 45.455 0.00 0.00 0.00 2.69
7112 10117 4.104831 AGAAGTATGCCAGGTTCTTAGGT 58.895 43.478 0.00 0.00 0.00 3.08
7113 10118 3.914426 AGTATGCCAGGTTCTTAGGTG 57.086 47.619 0.00 0.00 0.00 4.00
7114 10119 3.182152 AGTATGCCAGGTTCTTAGGTGT 58.818 45.455 0.00 0.00 0.00 4.16
7115 10120 2.789409 ATGCCAGGTTCTTAGGTGTC 57.211 50.000 0.00 0.00 0.00 3.67
7116 10121 1.729586 TGCCAGGTTCTTAGGTGTCT 58.270 50.000 0.00 0.00 0.00 3.41
7117 10122 1.623811 TGCCAGGTTCTTAGGTGTCTC 59.376 52.381 0.00 0.00 0.00 3.36
7118 10123 1.623811 GCCAGGTTCTTAGGTGTCTCA 59.376 52.381 0.00 0.00 0.00 3.27
7119 10124 2.038557 GCCAGGTTCTTAGGTGTCTCAA 59.961 50.000 0.00 0.00 0.00 3.02
7120 10125 3.866449 GCCAGGTTCTTAGGTGTCTCAAG 60.866 52.174 0.00 0.00 0.00 3.02
7121 10126 3.325135 CCAGGTTCTTAGGTGTCTCAAGT 59.675 47.826 0.00 0.00 0.00 3.16
7122 10127 4.202367 CCAGGTTCTTAGGTGTCTCAAGTT 60.202 45.833 0.00 0.00 0.00 2.66
7123 10128 5.368989 CAGGTTCTTAGGTGTCTCAAGTTT 58.631 41.667 0.00 0.00 0.00 2.66
7240 10276 9.535878 TTAACTGGCAAAAACCAAAAATAGTAG 57.464 29.630 0.00 0.00 39.86 2.57
7242 10278 6.168270 TGGCAAAAACCAAAAATAGTAGCT 57.832 33.333 0.00 0.00 36.55 3.32
7312 10348 6.146760 ACTATCACTGGGGATGAGATAACTT 58.853 40.000 0.00 0.00 0.00 2.66
7456 10496 4.853924 ATAACAACTGCCACTGGAAAAG 57.146 40.909 0.00 0.00 0.00 2.27
7458 10498 2.733956 ACAACTGCCACTGGAAAAGAA 58.266 42.857 0.00 0.00 0.00 2.52
7459 10499 2.689983 ACAACTGCCACTGGAAAAGAAG 59.310 45.455 0.00 0.00 0.00 2.85
7461 10501 3.515602 ACTGCCACTGGAAAAGAAGAT 57.484 42.857 0.00 0.00 0.00 2.40
7462 10502 4.640771 ACTGCCACTGGAAAAGAAGATA 57.359 40.909 0.00 0.00 0.00 1.98
7463 10503 4.327680 ACTGCCACTGGAAAAGAAGATAC 58.672 43.478 0.00 0.00 0.00 2.24
7464 10504 3.686016 TGCCACTGGAAAAGAAGATACC 58.314 45.455 0.00 0.00 0.00 2.73
7465 10505 3.330701 TGCCACTGGAAAAGAAGATACCT 59.669 43.478 0.00 0.00 0.00 3.08
7466 10506 4.202567 TGCCACTGGAAAAGAAGATACCTT 60.203 41.667 0.00 0.00 34.81 3.50
7467 10507 4.767409 GCCACTGGAAAAGAAGATACCTTT 59.233 41.667 0.00 0.00 35.55 3.11
7468 10508 5.335976 GCCACTGGAAAAGAAGATACCTTTG 60.336 44.000 0.00 0.00 34.42 2.77
7469 10509 5.183904 CCACTGGAAAAGAAGATACCTTTGG 59.816 44.000 0.00 0.00 34.42 3.28
7470 10510 4.767409 ACTGGAAAAGAAGATACCTTTGGC 59.233 41.667 0.00 0.00 34.42 4.52
7472 10512 4.766891 TGGAAAAGAAGATACCTTTGGCAG 59.233 41.667 0.00 0.00 34.42 4.85
7488 10550 1.002134 CAGGAGCGGTTGGATTGGT 60.002 57.895 0.00 0.00 0.00 3.67
7499 10561 3.347411 GGATTGGTCCGACTCTTCG 57.653 57.895 0.00 0.00 45.44 3.79
7534 10597 2.928757 CAGCTTCCTCTTCATCAAGTCG 59.071 50.000 0.00 0.00 0.00 4.18
7535 10598 2.564947 AGCTTCCTCTTCATCAAGTCGT 59.435 45.455 0.00 0.00 0.00 4.34
7645 10796 6.706055 TTCTTAAGCATCAACTTACTCACG 57.294 37.500 0.00 0.00 31.94 4.35
7697 10851 7.823799 GGAGAAAAGAATGATGAGAAAGAGAGT 59.176 37.037 0.00 0.00 0.00 3.24
7768 10985 5.740290 TTCTCCAGAACTTTGGTACTAGG 57.260 43.478 0.00 0.00 39.35 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.952990 TCCACATTGCGAGCAGAAAAA 59.047 42.857 0.00 0.00 0.00 1.94
11 12 1.603456 TCCACATTGCGAGCAGAAAA 58.397 45.000 0.00 0.00 0.00 2.29
12 13 1.603456 TTCCACATTGCGAGCAGAAA 58.397 45.000 0.00 0.00 0.00 2.52
13 14 1.603456 TTTCCACATTGCGAGCAGAA 58.397 45.000 0.00 0.00 0.00 3.02
14 15 1.603456 TTTTCCACATTGCGAGCAGA 58.397 45.000 0.00 0.00 0.00 4.26
15 16 2.095110 TCATTTTCCACATTGCGAGCAG 60.095 45.455 0.00 0.00 0.00 4.24
16 17 1.885233 TCATTTTCCACATTGCGAGCA 59.115 42.857 0.00 0.00 0.00 4.26
17 18 2.253603 GTCATTTTCCACATTGCGAGC 58.746 47.619 0.00 0.00 0.00 5.03
18 19 2.095768 ACGTCATTTTCCACATTGCGAG 60.096 45.455 0.00 0.00 0.00 5.03
19 20 1.876799 ACGTCATTTTCCACATTGCGA 59.123 42.857 0.00 0.00 0.00 5.10
20 21 1.978097 CACGTCATTTTCCACATTGCG 59.022 47.619 0.00 0.00 0.00 4.85
21 22 2.327568 CCACGTCATTTTCCACATTGC 58.672 47.619 0.00 0.00 0.00 3.56
22 23 2.288091 TGCCACGTCATTTTCCACATTG 60.288 45.455 0.00 0.00 0.00 2.82
23 24 1.959985 TGCCACGTCATTTTCCACATT 59.040 42.857 0.00 0.00 0.00 2.71
24 25 1.614996 TGCCACGTCATTTTCCACAT 58.385 45.000 0.00 0.00 0.00 3.21
25 26 1.614996 ATGCCACGTCATTTTCCACA 58.385 45.000 0.00 0.00 0.00 4.17
26 27 2.477863 GCTATGCCACGTCATTTTCCAC 60.478 50.000 0.00 0.00 0.00 4.02
27 28 1.742831 GCTATGCCACGTCATTTTCCA 59.257 47.619 0.00 0.00 0.00 3.53
28 29 2.017049 AGCTATGCCACGTCATTTTCC 58.983 47.619 0.00 0.00 0.00 3.13
29 30 2.677836 TGAGCTATGCCACGTCATTTTC 59.322 45.455 0.00 0.00 0.00 2.29
30 31 2.679837 CTGAGCTATGCCACGTCATTTT 59.320 45.455 0.00 0.00 0.00 1.82
31 32 2.283298 CTGAGCTATGCCACGTCATTT 58.717 47.619 0.00 0.00 0.00 2.32
32 33 1.945387 CTGAGCTATGCCACGTCATT 58.055 50.000 0.00 0.00 0.00 2.57
33 34 0.531532 GCTGAGCTATGCCACGTCAT 60.532 55.000 0.00 0.00 0.00 3.06
34 35 1.153568 GCTGAGCTATGCCACGTCA 60.154 57.895 0.00 0.00 0.00 4.35
35 36 2.233654 CGCTGAGCTATGCCACGTC 61.234 63.158 1.78 0.00 0.00 4.34
36 37 2.202797 CGCTGAGCTATGCCACGT 60.203 61.111 1.78 0.00 0.00 4.49
37 38 1.948138 CTCGCTGAGCTATGCCACG 60.948 63.158 1.78 0.00 0.00 4.94
38 39 4.024698 CTCGCTGAGCTATGCCAC 57.975 61.111 1.78 0.00 0.00 5.01
47 48 3.570638 CAATGGGCGCTCGCTGAG 61.571 66.667 7.64 1.80 41.60 3.35
58 59 1.662438 ATTAACGGTGGCGCAATGGG 61.662 55.000 10.83 0.00 0.00 4.00
59 60 0.525242 CATTAACGGTGGCGCAATGG 60.525 55.000 10.83 0.00 0.00 3.16
60 61 0.525242 CCATTAACGGTGGCGCAATG 60.525 55.000 10.83 8.59 0.00 2.82
61 62 1.662438 CCCATTAACGGTGGCGCAAT 61.662 55.000 10.83 0.00 35.35 3.56
62 63 2.336478 CCCATTAACGGTGGCGCAA 61.336 57.895 10.83 0.00 35.35 4.85
63 64 2.748251 CCCATTAACGGTGGCGCA 60.748 61.111 10.83 0.00 35.35 6.09
64 65 2.337246 AACCCATTAACGGTGGCGC 61.337 57.895 0.00 0.00 35.35 6.53
65 66 1.238625 ACAACCCATTAACGGTGGCG 61.239 55.000 0.00 0.00 35.35 5.69
66 67 1.823797 TACAACCCATTAACGGTGGC 58.176 50.000 0.00 0.00 35.35 5.01
67 68 4.437659 CGAAATACAACCCATTAACGGTGG 60.438 45.833 0.00 0.00 32.55 4.61
68 69 4.654015 CGAAATACAACCCATTAACGGTG 58.346 43.478 0.00 0.00 32.55 4.94
69 70 3.127376 GCGAAATACAACCCATTAACGGT 59.873 43.478 0.00 0.00 34.07 4.83
70 71 3.487879 GGCGAAATACAACCCATTAACGG 60.488 47.826 0.00 0.00 0.00 4.44
71 72 3.487879 GGGCGAAATACAACCCATTAACG 60.488 47.826 0.00 0.00 42.33 3.18
72 73 3.181484 GGGGCGAAATACAACCCATTAAC 60.181 47.826 0.00 0.00 44.76 2.01
73 74 3.025262 GGGGCGAAATACAACCCATTAA 58.975 45.455 0.00 0.00 44.76 1.40
74 75 2.025226 TGGGGCGAAATACAACCCATTA 60.025 45.455 0.00 0.00 46.00 1.90
75 76 1.272760 TGGGGCGAAATACAACCCATT 60.273 47.619 0.00 0.00 46.00 3.16
76 77 0.333312 TGGGGCGAAATACAACCCAT 59.667 50.000 0.00 0.00 46.00 4.00
77 78 4.747218 GGGGCGAAATACAACCCA 57.253 55.556 0.00 0.00 44.76 4.51
78 79 0.744281 CATGGGGCGAAATACAACCC 59.256 55.000 0.00 0.00 42.01 4.11
79 80 0.102300 GCATGGGGCGAAATACAACC 59.898 55.000 0.00 0.00 0.00 3.77
80 81 3.641031 GCATGGGGCGAAATACAAC 57.359 52.632 0.00 0.00 0.00 3.32
146 147 1.658596 CAGTCGCGCTACATGCTAAAA 59.341 47.619 15.01 0.00 40.11 1.52
147 148 1.277326 CAGTCGCGCTACATGCTAAA 58.723 50.000 15.01 0.00 40.11 1.85
236 241 8.201242 TCTCCCTTTGTAAATAAATGGCTTTT 57.799 30.769 3.72 3.72 0.00 2.27
237 242 7.790782 TCTCCCTTTGTAAATAAATGGCTTT 57.209 32.000 0.00 0.00 0.00 3.51
274 279 8.315482 TGTGGTTAATGCAATTACTACTGTCTA 58.685 33.333 8.55 0.00 38.79 2.59
278 283 7.377766 AGTGTGGTTAATGCAATTACTACTG 57.622 36.000 8.55 0.00 38.79 2.74
310 315 6.836242 TGGCAAATCTTGGGAGTTTTTAATT 58.164 32.000 0.00 0.00 0.00 1.40
331 337 5.054390 TGGAATTCACGATTAAAGTTGGC 57.946 39.130 7.93 0.00 0.00 4.52
482 490 9.155975 AGGACTTATATGATCATTGCGTATTTC 57.844 33.333 14.65 1.25 0.00 2.17
541 549 7.175990 AGCTTTGACCGGTCTTTTCATATAAAA 59.824 33.333 33.39 19.65 0.00 1.52
655 665 3.977244 GTGCCAAAGCGGTGGTGG 61.977 66.667 12.15 12.15 44.31 4.61
678 688 5.903198 AAATAAGAGAGAAGAGGGATGGG 57.097 43.478 0.00 0.00 0.00 4.00
684 694 9.709495 CTCAATGGATAAATAAGAGAGAAGAGG 57.291 37.037 0.00 0.00 0.00 3.69
690 700 9.775854 ACACATCTCAATGGATAAATAAGAGAG 57.224 33.333 0.00 0.00 37.19 3.20
694 704 8.074370 CAGCACACATCTCAATGGATAAATAAG 58.926 37.037 0.00 0.00 37.19 1.73
731 741 2.844451 GCACAAAACTGCCCGCAGA 61.844 57.895 22.97 0.00 46.30 4.26
878 889 0.946221 CTCGCTGGCTTTCAAGACGT 60.946 55.000 0.00 0.00 36.62 4.34
928 939 2.360852 GTGGGAGGAGGACGACGA 60.361 66.667 0.00 0.00 0.00 4.20
930 941 0.612453 AGAAGTGGGAGGAGGACGAC 60.612 60.000 0.00 0.00 0.00 4.34
946 971 1.342076 ACTATCTCCCTGCCGTGAGAA 60.342 52.381 0.00 0.00 40.75 2.87
999 1024 3.453070 GAGAGAGCCCACCGCCATC 62.453 68.421 0.00 0.00 38.78 3.51
1036 1069 1.488393 GGATTCAGGAAGTGGGAGGAG 59.512 57.143 0.00 0.00 0.00 3.69
1037 1070 1.584724 GGATTCAGGAAGTGGGAGGA 58.415 55.000 0.00 0.00 0.00 3.71
1038 1071 0.548510 GGGATTCAGGAAGTGGGAGG 59.451 60.000 0.00 0.00 0.00 4.30
1040 1073 1.271840 CGGGGATTCAGGAAGTGGGA 61.272 60.000 0.00 0.00 0.00 4.37
1041 1074 1.224592 CGGGGATTCAGGAAGTGGG 59.775 63.158 0.00 0.00 0.00 4.61
1042 1075 0.392998 CACGGGGATTCAGGAAGTGG 60.393 60.000 0.00 0.00 0.00 4.00
1043 1076 0.324943 ACACGGGGATTCAGGAAGTG 59.675 55.000 0.00 0.00 0.00 3.16
1044 1077 0.324943 CACACGGGGATTCAGGAAGT 59.675 55.000 0.00 0.00 0.00 3.01
1045 1078 0.324943 ACACACGGGGATTCAGGAAG 59.675 55.000 0.00 0.00 0.00 3.46
1047 1080 0.834261 TCACACACGGGGATTCAGGA 60.834 55.000 0.00 0.00 0.00 3.86
1048 1081 0.253044 ATCACACACGGGGATTCAGG 59.747 55.000 0.00 0.00 0.00 3.86
1050 1083 1.628340 AGAATCACACACGGGGATTCA 59.372 47.619 18.41 0.00 45.82 2.57
1051 1084 2.403252 AGAATCACACACGGGGATTC 57.597 50.000 10.52 10.52 44.49 2.52
1052 1085 2.224769 ACAAGAATCACACACGGGGATT 60.225 45.455 0.00 0.00 34.16 3.01
1053 1086 1.351017 ACAAGAATCACACACGGGGAT 59.649 47.619 0.00 0.00 0.00 3.85
1056 1227 2.224079 CAGAACAAGAATCACACACGGG 59.776 50.000 0.00 0.00 0.00 5.28
1058 1229 2.287644 TGCAGAACAAGAATCACACACG 59.712 45.455 0.00 0.00 0.00 4.49
1064 1235 5.127519 CCCCAAATATGCAGAACAAGAATCA 59.872 40.000 0.00 0.00 0.00 2.57
1072 1243 5.170748 CAGAAAACCCCAAATATGCAGAAC 58.829 41.667 0.00 0.00 0.00 3.01
1084 1255 1.751924 CGAACAAACCAGAAAACCCCA 59.248 47.619 0.00 0.00 0.00 4.96
1106 1278 8.575565 TTCAAGAATATACTACATGTTCTCGC 57.424 34.615 2.30 0.00 30.74 5.03
1156 1328 0.109597 GGCAAAATCAGCACAGTCCG 60.110 55.000 0.00 0.00 0.00 4.79
1195 1377 3.914551 AAGGAGACGGAGCAGGCCT 62.915 63.158 0.00 0.00 0.00 5.19
1198 1380 1.954362 CTGGAAGGAGACGGAGCAGG 61.954 65.000 0.00 0.00 0.00 4.85
1265 1569 5.728741 AGTTAGGGATTGAGGATTTGAGACT 59.271 40.000 0.00 0.00 0.00 3.24
1359 1671 1.666553 TGGTTGTTAGACCAGCGCG 60.667 57.895 0.00 0.00 44.53 6.86
1370 1682 2.853290 GCTGCTGCTGCTGGTTGTT 61.853 57.895 22.10 0.00 40.48 2.83
1378 1690 4.474113 GAATTAATATCTGCTGCTGCTGC 58.526 43.478 22.51 22.51 40.48 5.25
1394 1706 5.546110 CCAAAAGGAAAAGGGGAGGAATTAA 59.454 40.000 0.00 0.00 0.00 1.40
1426 1738 5.757320 ACATGGAGCAGAGATAAAGAAATCG 59.243 40.000 0.00 0.00 0.00 3.34
1432 1746 9.770097 TTCTAATAACATGGAGCAGAGATAAAG 57.230 33.333 0.00 0.00 0.00 1.85
1466 1780 5.648330 AATCCCAGTTCTAATTAGTCCCC 57.352 43.478 12.19 0.00 0.00 4.81
1591 1908 8.082242 AGACTTTGAAACTATTAACACAATGGC 58.918 33.333 0.00 0.00 0.00 4.40
1621 1938 6.213600 ACCAGGACATGAGAAAACATACTACT 59.786 38.462 0.00 0.00 0.00 2.57
1622 1939 6.407202 ACCAGGACATGAGAAAACATACTAC 58.593 40.000 0.00 0.00 0.00 2.73
1758 2092 1.778017 TAAGGAAGCCAGCCACTGCA 61.778 55.000 0.00 0.00 41.13 4.41
1770 2104 8.019669 CAGACAATGACAAACAGATTAAGGAAG 58.980 37.037 0.00 0.00 0.00 3.46
1776 2110 4.754618 ACGCAGACAATGACAAACAGATTA 59.245 37.500 0.00 0.00 0.00 1.75
1831 2165 1.064166 ACTGCAGCATCTTATTGGGCT 60.064 47.619 15.27 0.00 36.99 5.19
1854 2188 7.370383 TGCAGGATCTAATGTTTTTGAGAAAC 58.630 34.615 0.00 0.00 0.00 2.78
1857 2191 6.240894 ACTGCAGGATCTAATGTTTTTGAGA 58.759 36.000 19.93 0.00 0.00 3.27
1866 2200 6.426328 GGTAGAAATGACTGCAGGATCTAATG 59.574 42.308 19.93 0.00 0.00 1.90
1887 2222 1.917921 GCAGACGCGAAATCGGTAG 59.082 57.895 15.93 0.00 40.23 3.18
1916 2251 1.936203 GCTCGCAACAACCAATGCAAT 60.936 47.619 0.00 0.00 42.68 3.56
1918 2253 1.007502 GCTCGCAACAACCAATGCA 60.008 52.632 0.00 0.00 42.68 3.96
1973 2308 8.715006 AGCAGAGCTAATACACAAATGGTGGT 62.715 42.308 0.00 0.00 44.50 4.16
2035 2398 1.974265 TCTCCTAGAGACATCCAGCG 58.026 55.000 0.00 0.00 33.35 5.18
2089 2519 7.861629 AGTTGACAGGATATAACAGAATTCCA 58.138 34.615 0.65 0.00 0.00 3.53
2133 2564 5.833131 ACAGGTCAGGAAGAATATCTCTCTC 59.167 44.000 0.00 0.00 31.02 3.20
2142 2573 5.248380 AGCTTTAACAGGTCAGGAAGAAT 57.752 39.130 0.00 0.00 0.00 2.40
2183 2614 1.527844 CTGCAGGGATGCCTAAGCC 60.528 63.158 5.01 0.00 38.69 4.35
2184 2615 2.192187 GCTGCAGGGATGCCTAAGC 61.192 63.158 19.96 19.96 40.48 3.09
2185 2616 0.818445 CAGCTGCAGGGATGCCTAAG 60.818 60.000 17.12 8.14 0.00 2.18
2186 2617 1.225426 CAGCTGCAGGGATGCCTAA 59.775 57.895 17.12 0.00 0.00 2.69
2187 2618 1.273986 TTCAGCTGCAGGGATGCCTA 61.274 55.000 17.12 0.00 0.00 3.93
2188 2619 2.146146 TTTCAGCTGCAGGGATGCCT 62.146 55.000 17.12 0.00 0.00 4.75
2264 2695 5.675684 AAAAATGAAGACAGGGTTGTGTT 57.324 34.783 0.00 0.00 42.84 3.32
2303 2734 7.814587 GCAAAATGGACTAGCTGTTTTAAGATT 59.185 33.333 0.00 0.00 0.00 2.40
2308 2739 6.588719 ATGCAAAATGGACTAGCTGTTTTA 57.411 33.333 0.00 0.00 0.00 1.52
2313 2744 4.445452 ACAATGCAAAATGGACTAGCTG 57.555 40.909 0.00 0.00 0.00 4.24
2316 2747 8.863049 GTGAAAATACAATGCAAAATGGACTAG 58.137 33.333 0.00 0.00 0.00 2.57
2333 2764 5.705441 TGTCACCATGAGGAAGTGAAAATAC 59.295 40.000 3.68 0.00 41.87 1.89
2375 2806 0.322456 TGGAGACCAGGCCAAAATCG 60.322 55.000 5.01 0.00 0.00 3.34
2385 2816 2.031012 TTGCGCTGTGGAGACCAG 59.969 61.111 9.73 0.00 32.34 4.00
2425 2856 9.773328 CAATTGCAAAGTTCTCGAGATATTTAA 57.227 29.630 17.44 11.93 0.00 1.52
2426 2857 8.946085 ACAATTGCAAAGTTCTCGAGATATTTA 58.054 29.630 17.44 6.19 0.00 1.40
2427 2858 7.820648 ACAATTGCAAAGTTCTCGAGATATTT 58.179 30.769 17.44 16.44 0.00 1.40
2428 2859 7.383102 ACAATTGCAAAGTTCTCGAGATATT 57.617 32.000 17.44 11.22 0.00 1.28
2429 2860 6.992063 ACAATTGCAAAGTTCTCGAGATAT 57.008 33.333 17.44 4.92 0.00 1.63
2430 2861 7.097192 ACTACAATTGCAAAGTTCTCGAGATA 58.903 34.615 17.44 4.56 0.00 1.98
2431 2862 5.934625 ACTACAATTGCAAAGTTCTCGAGAT 59.065 36.000 17.44 0.00 0.00 2.75
2432 2863 5.297547 ACTACAATTGCAAAGTTCTCGAGA 58.702 37.500 12.08 12.08 0.00 4.04
2433 2864 5.597813 ACTACAATTGCAAAGTTCTCGAG 57.402 39.130 5.93 5.93 0.00 4.04
2434 2865 7.667043 AATACTACAATTGCAAAGTTCTCGA 57.333 32.000 1.71 0.00 0.00 4.04
2435 2866 9.425893 CATAATACTACAATTGCAAAGTTCTCG 57.574 33.333 1.71 0.00 0.00 4.04
2438 2869 9.722056 CCTCATAATACTACAATTGCAAAGTTC 57.278 33.333 1.71 0.00 0.00 3.01
2439 2870 8.686334 CCCTCATAATACTACAATTGCAAAGTT 58.314 33.333 1.71 0.00 0.00 2.66
2440 2871 7.834181 ACCCTCATAATACTACAATTGCAAAGT 59.166 33.333 1.71 8.24 0.00 2.66
2475 2906 9.724839 GAAGTGTTACATGAGTAGACTTATCTC 57.275 37.037 0.00 0.00 36.05 2.75
2535 2966 5.423886 TGTGTCAGAACAACATACAGTCAA 58.576 37.500 0.00 0.00 37.08 3.18
2570 3001 2.557924 GTTCAATGCCATGTCTGGTCAA 59.442 45.455 0.00 0.00 45.10 3.18
2575 3006 2.536365 GCATGTTCAATGCCATGTCTG 58.464 47.619 12.11 0.00 40.42 3.51
2588 3019 7.441458 ACCTTATTAAAGAGTATCGGCATGTTC 59.559 37.037 0.00 0.00 42.67 3.18
2825 3311 8.032451 GCAAAACAGGGCTAAACAGATTTTATA 58.968 33.333 0.00 0.00 0.00 0.98
2941 3427 8.413229 ACATTAGTGCAATTAGAAACAGTTTGT 58.587 29.630 2.34 1.44 0.00 2.83
2975 3462 3.524541 CAAAACATCAAGCTAATGCCCC 58.475 45.455 8.53 0.00 40.80 5.80
3032 3532 8.800370 AAAAGGAAGAGCAAAAACCATTTTTA 57.200 26.923 0.00 0.00 40.65 1.52
3112 3624 7.194607 ACAACCATAAGATATCGCAATTGAG 57.805 36.000 10.34 6.17 0.00 3.02
3328 3851 1.707427 AGCATCCAAGTTCCTCAAGGT 59.293 47.619 0.00 0.00 36.34 3.50
3451 4005 6.729187 AGAATTCTTTAGACAGTTGCACAAC 58.271 36.000 0.88 5.36 41.45 3.32
3550 4104 3.119029 CCTTAATGCCCTTCACAACCATG 60.119 47.826 0.00 0.00 0.00 3.66
3818 4398 1.218854 GCAATCACCCAATGCACCC 59.781 57.895 0.00 0.00 39.81 4.61
3851 4434 0.680618 CTTGAACATTTGGGCAGGCA 59.319 50.000 0.00 0.00 0.00 4.75
4356 5787 4.464008 TGTTGCTCTTCTTGAGGTTGAAT 58.536 39.130 0.00 0.00 42.87 2.57
4357 5788 3.884895 TGTTGCTCTTCTTGAGGTTGAA 58.115 40.909 0.00 0.00 42.87 2.69
4445 5908 9.155975 GCTGAGAATTCTAAATTAGTGACTTCA 57.844 33.333 8.25 0.00 0.00 3.02
4647 7475 4.022242 GCCTTCCTAGGAAAGGTGTTTTTC 60.022 45.833 27.20 14.01 46.62 2.29
4649 7477 3.497332 GCCTTCCTAGGAAAGGTGTTTT 58.503 45.455 27.20 0.00 46.62 2.43
4650 7478 2.552373 CGCCTTCCTAGGAAAGGTGTTT 60.552 50.000 28.12 0.00 46.62 2.83
4651 7479 1.003233 CGCCTTCCTAGGAAAGGTGTT 59.997 52.381 28.12 0.00 46.62 3.32
4655 7483 1.762957 TCATCGCCTTCCTAGGAAAGG 59.237 52.381 24.31 24.56 45.05 3.11
4762 7598 1.226323 CTCTTCATGCTGCTTGCGC 60.226 57.895 10.39 0.00 46.63 6.09
4859 7695 4.256920 GCTGCTGGAGAATAAACTGAAGA 58.743 43.478 0.00 0.00 0.00 2.87
4926 7773 4.267690 GCATGAACACAAATGCTCATCATG 59.732 41.667 0.00 8.15 44.64 3.07
5225 8213 5.539955 AGAAAATCCTGCACAAAGGTACAAT 59.460 36.000 0.00 0.00 38.58 2.71
5262 8250 2.858941 GTTTATCTTCTCGTCCTTCGCC 59.141 50.000 0.00 0.00 39.67 5.54
5510 8498 3.331150 ACGCACCTGATCGTCAAATAAA 58.669 40.909 0.00 0.00 33.09 1.40
5575 8569 7.173907 ACAGATTTCAGTGTCCTTACATCAAAG 59.826 37.037 0.00 0.00 38.08 2.77
5650 8646 5.448904 GCTCTTCCATCAATCTTGCTTTCTC 60.449 44.000 0.00 0.00 0.00 2.87
5707 8703 2.171237 AGGAAGATCGATTGCCATGTGA 59.829 45.455 0.00 0.00 0.00 3.58
6483 9479 0.478072 AAACCACTGCCCTCATGTGA 59.522 50.000 0.00 0.00 33.95 3.58
6580 9576 3.059884 TGAGAGATTTCACGTCAGCAAC 58.940 45.455 0.00 0.00 0.00 4.17
6847 9843 5.956642 AGAACAAAAGAAGTTGCGGTTAAA 58.043 33.333 0.00 0.00 31.29 1.52
6851 9847 3.942748 TGTAGAACAAAAGAAGTTGCGGT 59.057 39.130 0.00 0.00 31.29 5.68
6852 9848 4.545823 TGTAGAACAAAAGAAGTTGCGG 57.454 40.909 0.00 0.00 31.29 5.69
6853 9849 7.095607 ACTCTATGTAGAACAAAAGAAGTTGCG 60.096 37.037 0.00 0.00 31.29 4.85
6854 9850 8.089115 ACTCTATGTAGAACAAAAGAAGTTGC 57.911 34.615 0.00 0.00 31.29 4.17
6869 9873 8.254508 ACAAAAGAAGCCTCTTACTCTATGTAG 58.745 37.037 0.00 0.00 41.23 2.74
6872 9876 7.913674 AACAAAAGAAGCCTCTTACTCTATG 57.086 36.000 0.00 0.00 41.23 2.23
6873 9877 9.660180 CTAAACAAAAGAAGCCTCTTACTCTAT 57.340 33.333 0.00 0.00 41.23 1.98
6885 9889 6.476706 ACATGAAGCAACTAAACAAAAGAAGC 59.523 34.615 0.00 0.00 0.00 3.86
6954 9959 1.492176 CATAGCCTGGAACCCACAGAT 59.508 52.381 0.00 0.00 38.20 2.90
7001 10006 2.092807 TCATAGCAAAGCAGCATCCTCA 60.093 45.455 0.00 0.00 36.85 3.86
7035 10040 4.084328 GCGGCATAAGACACATTGTATCTC 60.084 45.833 0.00 0.00 0.00 2.75
7043 10048 2.710377 TGAAAGCGGCATAAGACACAT 58.290 42.857 1.45 0.00 0.00 3.21
7066 10071 2.224769 CCTGACTTTGAAGCCCCTACAA 60.225 50.000 0.00 0.00 0.00 2.41
7074 10079 6.606768 CATACTTCTTTCCTGACTTTGAAGC 58.393 40.000 0.00 0.00 35.64 3.86
7094 10099 3.197983 AGACACCTAAGAACCTGGCATAC 59.802 47.826 0.00 0.00 0.00 2.39
7095 10100 3.450904 AGACACCTAAGAACCTGGCATA 58.549 45.455 0.00 0.00 0.00 3.14
7096 10101 2.237392 GAGACACCTAAGAACCTGGCAT 59.763 50.000 0.00 0.00 0.00 4.40
7097 10102 1.623811 GAGACACCTAAGAACCTGGCA 59.376 52.381 0.00 0.00 0.00 4.92
7098 10103 1.623811 TGAGACACCTAAGAACCTGGC 59.376 52.381 0.00 0.00 0.00 4.85
7099 10104 3.325135 ACTTGAGACACCTAAGAACCTGG 59.675 47.826 0.00 0.00 0.00 4.45
7100 10105 4.608948 ACTTGAGACACCTAAGAACCTG 57.391 45.455 0.00 0.00 0.00 4.00
7101 10106 5.104485 ACAAACTTGAGACACCTAAGAACCT 60.104 40.000 0.00 0.00 0.00 3.50
7102 10107 5.123936 ACAAACTTGAGACACCTAAGAACC 58.876 41.667 0.00 0.00 0.00 3.62
7103 10108 7.041984 CCTTACAAACTTGAGACACCTAAGAAC 60.042 40.741 0.00 0.00 0.00 3.01
7104 10109 6.990349 CCTTACAAACTTGAGACACCTAAGAA 59.010 38.462 0.00 0.00 0.00 2.52
7105 10110 6.099269 ACCTTACAAACTTGAGACACCTAAGA 59.901 38.462 0.00 0.00 0.00 2.10
7106 10111 6.289064 ACCTTACAAACTTGAGACACCTAAG 58.711 40.000 0.00 0.00 0.00 2.18
7107 10112 6.243216 ACCTTACAAACTTGAGACACCTAA 57.757 37.500 0.00 0.00 0.00 2.69
7108 10113 5.881923 ACCTTACAAACTTGAGACACCTA 57.118 39.130 0.00 0.00 0.00 3.08
7109 10114 4.772886 ACCTTACAAACTTGAGACACCT 57.227 40.909 0.00 0.00 0.00 4.00
7110 10115 4.879545 TGAACCTTACAAACTTGAGACACC 59.120 41.667 0.00 0.00 0.00 4.16
7111 10116 5.815740 TCTGAACCTTACAAACTTGAGACAC 59.184 40.000 0.00 0.00 0.00 3.67
7112 10117 5.984725 TCTGAACCTTACAAACTTGAGACA 58.015 37.500 0.00 0.00 0.00 3.41
7113 10118 6.539103 AGTTCTGAACCTTACAAACTTGAGAC 59.461 38.462 16.48 0.00 0.00 3.36
7114 10119 6.650120 AGTTCTGAACCTTACAAACTTGAGA 58.350 36.000 16.48 0.00 0.00 3.27
7115 10120 6.927294 AGTTCTGAACCTTACAAACTTGAG 57.073 37.500 16.48 0.00 0.00 3.02
7117 10122 6.265577 CCAAGTTCTGAACCTTACAAACTTG 58.734 40.000 16.48 15.35 46.56 3.16
7118 10123 5.359860 CCCAAGTTCTGAACCTTACAAACTT 59.640 40.000 16.48 0.00 37.41 2.66
7119 10124 4.887655 CCCAAGTTCTGAACCTTACAAACT 59.112 41.667 16.48 0.00 0.00 2.66
7120 10125 4.643334 ACCCAAGTTCTGAACCTTACAAAC 59.357 41.667 16.48 0.00 0.00 2.93
7121 10126 4.862371 ACCCAAGTTCTGAACCTTACAAA 58.138 39.130 16.48 0.00 0.00 2.83
7122 10127 4.513406 ACCCAAGTTCTGAACCTTACAA 57.487 40.909 16.48 0.00 0.00 2.41
7123 10128 4.513406 AACCCAAGTTCTGAACCTTACA 57.487 40.909 16.48 0.00 0.00 2.41
7153 10189 8.768955 GGCTCTAAACATAACAATCACTATCAG 58.231 37.037 0.00 0.00 0.00 2.90
7240 10276 5.822278 TCACTACAGAATACAGATCGAAGC 58.178 41.667 0.00 0.00 0.00 3.86
7242 10278 7.996385 TCATTCACTACAGAATACAGATCGAA 58.004 34.615 0.00 0.00 36.13 3.71
7299 10335 4.811024 TGCACGAATGAAGTTATCTCATCC 59.189 41.667 0.00 0.00 0.00 3.51
7464 10504 2.629656 CCAACCGCTCCTGCCAAAG 61.630 63.158 0.00 0.00 35.36 2.77
7465 10505 2.424842 ATCCAACCGCTCCTGCCAAA 62.425 55.000 0.00 0.00 35.36 3.28
7466 10506 2.424842 AATCCAACCGCTCCTGCCAA 62.425 55.000 0.00 0.00 35.36 4.52
7467 10507 2.905996 AATCCAACCGCTCCTGCCA 61.906 57.895 0.00 0.00 35.36 4.92
7468 10508 2.044946 AATCCAACCGCTCCTGCC 60.045 61.111 0.00 0.00 35.36 4.85
7469 10509 2.409870 CCAATCCAACCGCTCCTGC 61.410 63.158 0.00 0.00 0.00 4.85
7470 10510 1.002134 ACCAATCCAACCGCTCCTG 60.002 57.895 0.00 0.00 0.00 3.86
7472 10512 1.749258 GGACCAATCCAACCGCTCC 60.749 63.158 0.00 0.00 45.47 4.70
7473 10513 2.106683 CGGACCAATCCAACCGCTC 61.107 63.158 0.00 0.00 46.67 5.03
7499 10561 6.581712 AGAGGAAGCTGAGTATTTTGATCTC 58.418 40.000 0.00 0.00 0.00 2.75
7508 10570 5.424895 ACTTGATGAAGAGGAAGCTGAGTAT 59.575 40.000 0.00 0.00 32.98 2.12
7514 10577 2.564947 ACGACTTGATGAAGAGGAAGCT 59.435 45.455 0.00 0.00 32.98 3.74
7645 10796 3.214328 TGGCAGAAACTTGAAGAGAACC 58.786 45.455 0.00 0.00 0.00 3.62
7724 10941 8.674263 AGAACATTAATGATTCCATCAGAGTC 57.326 34.615 22.16 0.00 43.53 3.36
7753 10970 7.981102 ATTTGTCTTCCTAGTACCAAAGTTC 57.019 36.000 0.00 0.00 0.00 3.01
7756 10973 9.110502 GGAATATTTGTCTTCCTAGTACCAAAG 57.889 37.037 0.00 0.00 38.31 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.