Multiple sequence alignment - TraesCS6D01G319200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G319200 chr6D 100.000 3110 0 0 1 3110 427217979 427214870 0.000000e+00 5744
1 TraesCS6D01G319200 chr6A 90.154 2082 130 36 490 2530 571902293 571900246 0.000000e+00 2639
2 TraesCS6D01G319200 chr6A 78.972 428 50 15 1323 1743 558770231 558769837 3.980000e-64 255
3 TraesCS6D01G319200 chr6B 92.153 1147 60 14 423 1563 643147764 643146642 0.000000e+00 1592
4 TraesCS6D01G319200 chr6B 91.034 948 50 18 1557 2480 643146450 643145514 0.000000e+00 1247
5 TraesCS6D01G319200 chr6B 79.206 428 49 16 1323 1743 698419996 698419602 8.550000e-66 261
6 TraesCS6D01G319200 chr4A 91.468 586 47 3 2525 3110 581762154 581761572 0.000000e+00 802
7 TraesCS6D01G319200 chr4A 78.972 428 50 15 1323 1743 560956238 560955844 3.980000e-64 255
8 TraesCS6D01G319200 chr7D 91.171 589 48 3 2525 3110 69435912 69435325 0.000000e+00 797
9 TraesCS6D01G319200 chr3B 90.051 583 57 1 2525 3107 828496358 828496939 0.000000e+00 754
10 TraesCS6D01G319200 chr3B 89.003 582 62 2 2525 3106 828692966 828692387 0.000000e+00 719
11 TraesCS6D01G319200 chr7B 88.851 583 62 3 2525 3107 151379357 151379936 0.000000e+00 713
12 TraesCS6D01G319200 chrUn 88.055 586 67 3 2525 3110 29823092 29822510 0.000000e+00 691
13 TraesCS6D01G319200 chr2A 86.140 570 77 2 2538 3107 690407585 690408152 5.700000e-172 614
14 TraesCS6D01G319200 chr5B 84.746 590 79 11 2526 3110 68897880 68897297 5.780000e-162 580
15 TraesCS6D01G319200 chr7A 84.656 567 85 2 2538 3104 3089957 3090521 5.820000e-157 564
16 TraesCS6D01G319200 chr2B 78.972 428 50 15 1323 1743 571196009 571196403 3.980000e-64 255
17 TraesCS6D01G319200 chr3A 78.788 429 49 17 1323 1743 41545823 41545429 1.850000e-62 250
18 TraesCS6D01G319200 chr1B 78.247 308 39 16 1666 1952 196867863 196868163 4.120000e-39 172
19 TraesCS6D01G319200 chr1B 78.146 302 39 15 1666 1946 500270393 500270688 1.920000e-37 167


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G319200 chr6D 427214870 427217979 3109 True 5744.0 5744 100.0000 1 3110 1 chr6D.!!$R1 3109
1 TraesCS6D01G319200 chr6A 571900246 571902293 2047 True 2639.0 2639 90.1540 490 2530 1 chr6A.!!$R2 2040
2 TraesCS6D01G319200 chr6B 643145514 643147764 2250 True 1419.5 1592 91.5935 423 2480 2 chr6B.!!$R2 2057
3 TraesCS6D01G319200 chr4A 581761572 581762154 582 True 802.0 802 91.4680 2525 3110 1 chr4A.!!$R2 585
4 TraesCS6D01G319200 chr7D 69435325 69435912 587 True 797.0 797 91.1710 2525 3110 1 chr7D.!!$R1 585
5 TraesCS6D01G319200 chr3B 828496358 828496939 581 False 754.0 754 90.0510 2525 3107 1 chr3B.!!$F1 582
6 TraesCS6D01G319200 chr3B 828692387 828692966 579 True 719.0 719 89.0030 2525 3106 1 chr3B.!!$R1 581
7 TraesCS6D01G319200 chr7B 151379357 151379936 579 False 713.0 713 88.8510 2525 3107 1 chr7B.!!$F1 582
8 TraesCS6D01G319200 chrUn 29822510 29823092 582 True 691.0 691 88.0550 2525 3110 1 chrUn.!!$R1 585
9 TraesCS6D01G319200 chr2A 690407585 690408152 567 False 614.0 614 86.1400 2538 3107 1 chr2A.!!$F1 569
10 TraesCS6D01G319200 chr5B 68897297 68897880 583 True 580.0 580 84.7460 2526 3110 1 chr5B.!!$R1 584
11 TraesCS6D01G319200 chr7A 3089957 3090521 564 False 564.0 564 84.6560 2538 3104 1 chr7A.!!$F1 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
112 113 0.109597 GAACATGTCTTGGCGGCTTG 60.110 55.0 11.43 2.73 0.00 4.01 F
185 186 0.240945 GCACAACAGGAAATCCGGTG 59.759 55.0 6.00 6.86 43.61 4.94 F
339 340 0.242286 ACAGACGCTGAGTACTGCAG 59.758 55.0 13.48 13.48 40.22 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 1846 0.180171 TGCATTGACCTCGGTATGGG 59.820 55.000 2.09 0.0 0.00 4.00 R
1687 1912 2.292828 ACACCTTTCTTGGTCATGGG 57.707 50.000 0.00 0.0 38.45 4.00 R
2226 2476 2.135933 ACTTCTTGCAACGCTACACTC 58.864 47.619 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.829373 AATGGTTATCTAAAAATCTCTTGGCT 57.171 30.769 0.00 0.00 0.00 4.75
45 46 8.829373 ATGGTTATCTAAAAATCTCTTGGCTT 57.171 30.769 0.00 0.00 0.00 4.35
46 47 8.281212 TGGTTATCTAAAAATCTCTTGGCTTC 57.719 34.615 0.00 0.00 0.00 3.86
47 48 8.109634 TGGTTATCTAAAAATCTCTTGGCTTCT 58.890 33.333 0.00 0.00 0.00 2.85
48 49 8.616942 GGTTATCTAAAAATCTCTTGGCTTCTC 58.383 37.037 0.00 0.00 0.00 2.87
49 50 9.167311 GTTATCTAAAAATCTCTTGGCTTCTCA 57.833 33.333 0.00 0.00 0.00 3.27
50 51 9.911788 TTATCTAAAAATCTCTTGGCTTCTCAT 57.088 29.630 0.00 0.00 0.00 2.90
51 52 7.856145 TCTAAAAATCTCTTGGCTTCTCATC 57.144 36.000 0.00 0.00 0.00 2.92
52 53 5.911378 AAAAATCTCTTGGCTTCTCATCC 57.089 39.130 0.00 0.00 0.00 3.51
53 54 4.858965 AAATCTCTTGGCTTCTCATCCT 57.141 40.909 0.00 0.00 0.00 3.24
54 55 5.965033 AAATCTCTTGGCTTCTCATCCTA 57.035 39.130 0.00 0.00 0.00 2.94
55 56 6.512514 AAATCTCTTGGCTTCTCATCCTAT 57.487 37.500 0.00 0.00 0.00 2.57
56 57 6.512514 AATCTCTTGGCTTCTCATCCTATT 57.487 37.500 0.00 0.00 0.00 1.73
57 58 7.623999 AATCTCTTGGCTTCTCATCCTATTA 57.376 36.000 0.00 0.00 0.00 0.98
58 59 7.811482 ATCTCTTGGCTTCTCATCCTATTAT 57.189 36.000 0.00 0.00 0.00 1.28
59 60 8.907829 ATCTCTTGGCTTCTCATCCTATTATA 57.092 34.615 0.00 0.00 0.00 0.98
60 61 8.128322 TCTCTTGGCTTCTCATCCTATTATAC 57.872 38.462 0.00 0.00 0.00 1.47
61 62 7.952930 TCTCTTGGCTTCTCATCCTATTATACT 59.047 37.037 0.00 0.00 0.00 2.12
62 63 9.249053 CTCTTGGCTTCTCATCCTATTATACTA 57.751 37.037 0.00 0.00 0.00 1.82
63 64 9.249053 TCTTGGCTTCTCATCCTATTATACTAG 57.751 37.037 0.00 0.00 0.00 2.57
64 65 8.958060 TTGGCTTCTCATCCTATTATACTAGT 57.042 34.615 0.00 0.00 0.00 2.57
66 67 9.688091 TGGCTTCTCATCCTATTATACTAGTAG 57.312 37.037 8.85 0.00 0.00 2.57
67 68 9.689501 GGCTTCTCATCCTATTATACTAGTAGT 57.310 37.037 8.85 8.14 0.00 2.73
82 83 6.872585 ACTAGTAGTATATAGGAGCGAGGT 57.127 41.667 0.00 0.00 0.00 3.85
83 84 7.969690 ACTAGTAGTATATAGGAGCGAGGTA 57.030 40.000 0.00 0.00 0.00 3.08
84 85 8.551682 ACTAGTAGTATATAGGAGCGAGGTAT 57.448 38.462 0.00 0.00 0.00 2.73
85 86 8.641541 ACTAGTAGTATATAGGAGCGAGGTATC 58.358 40.741 0.00 0.00 0.00 2.24
86 87 7.434927 AGTAGTATATAGGAGCGAGGTATCA 57.565 40.000 0.00 0.00 0.00 2.15
87 88 7.274447 AGTAGTATATAGGAGCGAGGTATCAC 58.726 42.308 0.00 0.00 0.00 3.06
88 89 6.063496 AGTATATAGGAGCGAGGTATCACA 57.937 41.667 0.00 0.00 0.00 3.58
89 90 5.881443 AGTATATAGGAGCGAGGTATCACAC 59.119 44.000 0.00 0.00 0.00 3.82
90 91 2.730934 TAGGAGCGAGGTATCACACT 57.269 50.000 0.00 0.00 0.00 3.55
91 92 1.107114 AGGAGCGAGGTATCACACTG 58.893 55.000 0.00 0.00 0.00 3.66
92 93 0.818296 GGAGCGAGGTATCACACTGT 59.182 55.000 0.00 0.00 0.00 3.55
93 94 1.469940 GGAGCGAGGTATCACACTGTG 60.470 57.143 6.19 6.19 34.45 3.66
94 95 1.472878 GAGCGAGGTATCACACTGTGA 59.527 52.381 15.86 14.26 46.90 3.58
95 96 1.893137 AGCGAGGTATCACACTGTGAA 59.107 47.619 15.80 2.34 45.96 3.18
96 97 1.993370 GCGAGGTATCACACTGTGAAC 59.007 52.381 15.80 13.77 45.96 3.18
97 98 2.609491 GCGAGGTATCACACTGTGAACA 60.609 50.000 15.80 4.54 45.96 3.18
98 99 3.849911 CGAGGTATCACACTGTGAACAT 58.150 45.455 15.80 12.21 45.96 2.71
99 100 3.614176 CGAGGTATCACACTGTGAACATG 59.386 47.826 15.80 2.11 45.96 3.21
100 101 4.569943 GAGGTATCACACTGTGAACATGT 58.430 43.478 15.80 0.00 45.96 3.21
101 102 4.569943 AGGTATCACACTGTGAACATGTC 58.430 43.478 15.80 3.75 45.96 3.06
102 103 4.284490 AGGTATCACACTGTGAACATGTCT 59.716 41.667 15.80 5.71 45.96 3.41
103 104 4.997395 GGTATCACACTGTGAACATGTCTT 59.003 41.667 15.80 0.00 45.96 3.01
104 105 5.106948 GGTATCACACTGTGAACATGTCTTG 60.107 44.000 15.80 0.00 45.96 3.02
105 106 3.205338 TCACACTGTGAACATGTCTTGG 58.795 45.455 15.86 0.00 39.78 3.61
106 107 1.949525 ACACTGTGAACATGTCTTGGC 59.050 47.619 15.86 0.00 0.00 4.52
107 108 1.069703 CACTGTGAACATGTCTTGGCG 60.070 52.381 0.32 0.00 0.00 5.69
108 109 0.518636 CTGTGAACATGTCTTGGCGG 59.481 55.000 0.00 0.00 0.00 6.13
109 110 1.210155 GTGAACATGTCTTGGCGGC 59.790 57.895 0.00 0.00 0.00 6.53
110 111 1.073025 TGAACATGTCTTGGCGGCT 59.927 52.632 11.43 0.00 0.00 5.52
111 112 0.537143 TGAACATGTCTTGGCGGCTT 60.537 50.000 11.43 0.00 0.00 4.35
112 113 0.109597 GAACATGTCTTGGCGGCTTG 60.110 55.000 11.43 2.73 0.00 4.01
113 114 1.526575 AACATGTCTTGGCGGCTTGG 61.527 55.000 11.43 0.00 0.00 3.61
114 115 3.064324 ATGTCTTGGCGGCTTGGC 61.064 61.111 11.43 4.91 45.12 4.52
127 128 3.717400 GGCTTGGCCTTCTTTATAAGC 57.283 47.619 3.32 8.04 46.69 3.09
128 129 3.291584 GGCTTGGCCTTCTTTATAAGCT 58.708 45.455 16.85 0.00 46.69 3.74
129 130 4.461198 GGCTTGGCCTTCTTTATAAGCTA 58.539 43.478 16.85 0.00 46.69 3.32
130 131 5.073428 GGCTTGGCCTTCTTTATAAGCTAT 58.927 41.667 16.85 0.00 46.69 2.97
131 132 5.536538 GGCTTGGCCTTCTTTATAAGCTATT 59.463 40.000 16.85 0.00 46.69 1.73
132 133 6.715264 GGCTTGGCCTTCTTTATAAGCTATTA 59.285 38.462 16.85 0.00 46.69 0.98
133 134 7.230712 GGCTTGGCCTTCTTTATAAGCTATTAA 59.769 37.037 16.85 0.00 46.69 1.40
134 135 8.630037 GCTTGGCCTTCTTTATAAGCTATTAAA 58.370 33.333 3.32 0.00 37.95 1.52
150 151 7.649057 AGCTATTAAATTTTGGTCCTAATCGC 58.351 34.615 0.00 0.00 0.00 4.58
151 152 6.861572 GCTATTAAATTTTGGTCCTAATCGCC 59.138 38.462 0.00 0.00 0.00 5.54
152 153 7.255486 GCTATTAAATTTTGGTCCTAATCGCCT 60.255 37.037 0.00 0.00 0.00 5.52
153 154 6.844097 TTAAATTTTGGTCCTAATCGCCTT 57.156 33.333 0.00 0.00 0.00 4.35
154 155 4.718940 AATTTTGGTCCTAATCGCCTTG 57.281 40.909 0.00 0.00 0.00 3.61
155 156 2.871096 TTTGGTCCTAATCGCCTTGT 57.129 45.000 0.00 0.00 0.00 3.16
156 157 2.871096 TTGGTCCTAATCGCCTTGTT 57.129 45.000 0.00 0.00 0.00 2.83
157 158 2.107950 TGGTCCTAATCGCCTTGTTG 57.892 50.000 0.00 0.00 0.00 3.33
158 159 0.733150 GGTCCTAATCGCCTTGTTGC 59.267 55.000 0.00 0.00 0.00 4.17
166 167 4.440127 GCCTTGTTGCGCCATGGG 62.440 66.667 15.13 4.77 31.89 4.00
167 168 4.440127 CCTTGTTGCGCCATGGGC 62.440 66.667 15.13 15.60 46.75 5.36
177 178 4.517663 CCATGGGCACAACAGGAA 57.482 55.556 2.85 0.00 0.00 3.36
178 179 2.744062 CCATGGGCACAACAGGAAA 58.256 52.632 2.85 0.00 0.00 3.13
179 180 1.269012 CCATGGGCACAACAGGAAAT 58.731 50.000 2.85 0.00 0.00 2.17
180 181 1.205417 CCATGGGCACAACAGGAAATC 59.795 52.381 2.85 0.00 0.00 2.17
181 182 1.205417 CATGGGCACAACAGGAAATCC 59.795 52.381 0.00 0.00 0.00 3.01
182 183 0.893270 TGGGCACAACAGGAAATCCG 60.893 55.000 0.00 0.00 42.08 4.18
183 184 1.595093 GGGCACAACAGGAAATCCGG 61.595 60.000 0.00 0.00 42.08 5.14
184 185 0.893727 GGCACAACAGGAAATCCGGT 60.894 55.000 0.00 0.00 46.34 5.28
185 186 0.240945 GCACAACAGGAAATCCGGTG 59.759 55.000 6.00 6.86 43.61 4.94
186 187 1.890876 CACAACAGGAAATCCGGTGA 58.109 50.000 13.65 0.00 43.61 4.02
187 188 2.226330 CACAACAGGAAATCCGGTGAA 58.774 47.619 13.65 0.00 43.61 3.18
188 189 2.226437 CACAACAGGAAATCCGGTGAAG 59.774 50.000 13.65 7.21 43.61 3.02
189 190 2.105821 ACAACAGGAAATCCGGTGAAGA 59.894 45.455 13.65 0.00 43.61 2.87
190 191 3.244911 ACAACAGGAAATCCGGTGAAGAT 60.245 43.478 13.65 0.00 43.61 2.40
191 192 4.019681 ACAACAGGAAATCCGGTGAAGATA 60.020 41.667 13.65 0.00 43.61 1.98
192 193 4.837093 ACAGGAAATCCGGTGAAGATAA 57.163 40.909 0.00 0.00 42.79 1.75
193 194 4.770795 ACAGGAAATCCGGTGAAGATAAG 58.229 43.478 0.00 0.00 42.79 1.73
194 195 4.469945 ACAGGAAATCCGGTGAAGATAAGA 59.530 41.667 0.00 0.00 42.79 2.10
195 196 4.811557 CAGGAAATCCGGTGAAGATAAGAC 59.188 45.833 0.00 0.00 42.08 3.01
196 197 4.469945 AGGAAATCCGGTGAAGATAAGACA 59.530 41.667 0.00 0.00 42.08 3.41
197 198 4.811557 GGAAATCCGGTGAAGATAAGACAG 59.188 45.833 0.00 0.00 0.00 3.51
198 199 5.395324 GGAAATCCGGTGAAGATAAGACAGA 60.395 44.000 0.00 0.00 0.00 3.41
199 200 4.927978 ATCCGGTGAAGATAAGACAGAG 57.072 45.455 0.00 0.00 0.00 3.35
200 201 3.024547 TCCGGTGAAGATAAGACAGAGG 58.975 50.000 0.00 0.00 0.00 3.69
201 202 2.101582 CCGGTGAAGATAAGACAGAGGG 59.898 54.545 0.00 0.00 0.00 4.30
202 203 3.024547 CGGTGAAGATAAGACAGAGGGA 58.975 50.000 0.00 0.00 0.00 4.20
203 204 3.447586 CGGTGAAGATAAGACAGAGGGAA 59.552 47.826 0.00 0.00 0.00 3.97
204 205 4.440802 CGGTGAAGATAAGACAGAGGGAAG 60.441 50.000 0.00 0.00 0.00 3.46
205 206 4.468153 GGTGAAGATAAGACAGAGGGAAGT 59.532 45.833 0.00 0.00 0.00 3.01
206 207 5.046231 GGTGAAGATAAGACAGAGGGAAGTT 60.046 44.000 0.00 0.00 0.00 2.66
207 208 6.103330 GTGAAGATAAGACAGAGGGAAGTTC 58.897 44.000 0.00 0.00 0.00 3.01
208 209 5.187967 TGAAGATAAGACAGAGGGAAGTTCC 59.812 44.000 13.99 13.99 35.23 3.62
209 210 4.689062 AGATAAGACAGAGGGAAGTTCCA 58.311 43.478 23.33 0.00 38.64 3.53
210 211 5.284582 AGATAAGACAGAGGGAAGTTCCAT 58.715 41.667 23.33 17.16 38.64 3.41
211 212 3.990959 AAGACAGAGGGAAGTTCCATC 57.009 47.619 25.68 25.68 46.98 3.51
217 218 3.828875 GAGGGAAGTTCCATCACCTAG 57.171 52.381 27.50 0.00 45.97 3.02
218 219 2.436173 GAGGGAAGTTCCATCACCTAGG 59.564 54.545 27.50 7.41 45.97 3.02
219 220 2.197465 GGGAAGTTCCATCACCTAGGT 58.803 52.381 23.33 9.21 38.64 3.08
220 221 2.576648 GGGAAGTTCCATCACCTAGGTT 59.423 50.000 23.33 0.00 38.64 3.50
221 222 3.010250 GGGAAGTTCCATCACCTAGGTTT 59.990 47.826 23.33 0.52 38.64 3.27
222 223 4.508584 GGGAAGTTCCATCACCTAGGTTTT 60.509 45.833 23.33 0.00 38.64 2.43
223 224 5.280830 GGGAAGTTCCATCACCTAGGTTTTA 60.281 44.000 23.33 0.63 38.64 1.52
224 225 5.880887 GGAAGTTCCATCACCTAGGTTTTAG 59.119 44.000 13.15 0.29 36.28 1.85
225 226 4.844884 AGTTCCATCACCTAGGTTTTAGC 58.155 43.478 13.15 0.00 0.00 3.09
226 227 4.536489 AGTTCCATCACCTAGGTTTTAGCT 59.464 41.667 13.15 2.10 0.00 3.32
227 228 4.755266 TCCATCACCTAGGTTTTAGCTC 57.245 45.455 13.15 0.00 0.00 4.09
228 229 3.132289 TCCATCACCTAGGTTTTAGCTCG 59.868 47.826 13.15 0.00 0.00 5.03
229 230 3.458189 CATCACCTAGGTTTTAGCTCGG 58.542 50.000 13.15 0.00 35.02 4.63
230 231 2.532843 TCACCTAGGTTTTAGCTCGGT 58.467 47.619 13.15 0.00 41.68 4.69
231 232 3.700538 TCACCTAGGTTTTAGCTCGGTA 58.299 45.455 13.15 0.00 39.39 4.02
232 233 4.284178 TCACCTAGGTTTTAGCTCGGTAT 58.716 43.478 13.15 0.00 39.39 2.73
233 234 4.713321 TCACCTAGGTTTTAGCTCGGTATT 59.287 41.667 13.15 0.00 39.39 1.89
234 235 5.188359 TCACCTAGGTTTTAGCTCGGTATTT 59.812 40.000 13.15 0.00 39.39 1.40
235 236 5.522824 CACCTAGGTTTTAGCTCGGTATTTC 59.477 44.000 13.15 0.00 39.39 2.17
236 237 5.188359 ACCTAGGTTTTAGCTCGGTATTTCA 59.812 40.000 9.21 0.00 39.58 2.69
237 238 5.753921 CCTAGGTTTTAGCTCGGTATTTCAG 59.246 44.000 0.00 0.00 0.00 3.02
238 239 3.939592 AGGTTTTAGCTCGGTATTTCAGC 59.060 43.478 0.00 0.00 0.00 4.26
239 240 3.064958 GGTTTTAGCTCGGTATTTCAGCC 59.935 47.826 0.00 0.00 33.28 4.85
240 241 2.614829 TTAGCTCGGTATTTCAGCCC 57.385 50.000 0.00 0.00 33.28 5.19
241 242 0.387929 TAGCTCGGTATTTCAGCCCG 59.612 55.000 0.00 0.00 43.03 6.13
242 243 2.534903 GCTCGGTATTTCAGCCCGC 61.535 63.158 0.00 0.00 41.46 6.13
243 244 1.153449 CTCGGTATTTCAGCCCGCA 60.153 57.895 0.00 0.00 41.46 5.69
244 245 1.429148 CTCGGTATTTCAGCCCGCAC 61.429 60.000 0.00 0.00 41.46 5.34
245 246 2.808958 CGGTATTTCAGCCCGCACG 61.809 63.158 0.00 0.00 34.62 5.34
246 247 1.448893 GGTATTTCAGCCCGCACGA 60.449 57.895 0.00 0.00 0.00 4.35
247 248 0.814010 GGTATTTCAGCCCGCACGAT 60.814 55.000 0.00 0.00 0.00 3.73
248 249 0.582005 GTATTTCAGCCCGCACGATC 59.418 55.000 0.00 0.00 0.00 3.69
249 250 0.464036 TATTTCAGCCCGCACGATCT 59.536 50.000 0.00 0.00 0.00 2.75
250 251 0.464036 ATTTCAGCCCGCACGATCTA 59.536 50.000 0.00 0.00 0.00 1.98
251 252 0.464036 TTTCAGCCCGCACGATCTAT 59.536 50.000 0.00 0.00 0.00 1.98
252 253 1.324383 TTCAGCCCGCACGATCTATA 58.676 50.000 0.00 0.00 0.00 1.31
253 254 1.545841 TCAGCCCGCACGATCTATAT 58.454 50.000 0.00 0.00 0.00 0.86
254 255 1.202348 TCAGCCCGCACGATCTATATG 59.798 52.381 0.00 0.00 0.00 1.78
255 256 1.202348 CAGCCCGCACGATCTATATGA 59.798 52.381 0.00 0.00 0.00 2.15
256 257 1.893137 AGCCCGCACGATCTATATGAA 59.107 47.619 0.00 0.00 0.00 2.57
257 258 1.993370 GCCCGCACGATCTATATGAAC 59.007 52.381 0.00 0.00 0.00 3.18
258 259 2.607187 CCCGCACGATCTATATGAACC 58.393 52.381 0.00 0.00 0.00 3.62
259 260 2.231478 CCCGCACGATCTATATGAACCT 59.769 50.000 0.00 0.00 0.00 3.50
260 261 3.442625 CCCGCACGATCTATATGAACCTA 59.557 47.826 0.00 0.00 0.00 3.08
261 262 4.438880 CCCGCACGATCTATATGAACCTAG 60.439 50.000 0.00 0.00 0.00 3.02
262 263 4.099120 CGCACGATCTATATGAACCTAGC 58.901 47.826 0.00 0.00 0.00 3.42
263 264 4.142578 CGCACGATCTATATGAACCTAGCT 60.143 45.833 0.00 0.00 0.00 3.32
264 265 5.620205 CGCACGATCTATATGAACCTAGCTT 60.620 44.000 0.00 0.00 0.00 3.74
265 266 6.403309 CGCACGATCTATATGAACCTAGCTTA 60.403 42.308 0.00 0.00 0.00 3.09
266 267 7.484975 GCACGATCTATATGAACCTAGCTTAT 58.515 38.462 0.00 0.00 0.00 1.73
267 268 7.646130 GCACGATCTATATGAACCTAGCTTATC 59.354 40.741 0.00 0.00 0.00 1.75
268 269 8.678199 CACGATCTATATGAACCTAGCTTATCA 58.322 37.037 0.00 0.00 0.00 2.15
269 270 8.898761 ACGATCTATATGAACCTAGCTTATCAG 58.101 37.037 0.00 0.00 0.00 2.90
270 271 9.114952 CGATCTATATGAACCTAGCTTATCAGA 57.885 37.037 0.00 0.00 0.00 3.27
276 277 9.905713 ATATGAACCTAGCTTATCAGAAAACAA 57.094 29.630 0.00 0.00 0.00 2.83
277 278 8.635765 ATGAACCTAGCTTATCAGAAAACAAA 57.364 30.769 0.00 0.00 0.00 2.83
278 279 8.458573 TGAACCTAGCTTATCAGAAAACAAAA 57.541 30.769 0.00 0.00 0.00 2.44
279 280 8.908903 TGAACCTAGCTTATCAGAAAACAAAAA 58.091 29.630 0.00 0.00 0.00 1.94
280 281 9.181805 GAACCTAGCTTATCAGAAAACAAAAAC 57.818 33.333 0.00 0.00 0.00 2.43
281 282 8.232913 ACCTAGCTTATCAGAAAACAAAAACA 57.767 30.769 0.00 0.00 0.00 2.83
282 283 8.860088 ACCTAGCTTATCAGAAAACAAAAACAT 58.140 29.630 0.00 0.00 0.00 2.71
308 309 8.659925 AAATCAAATGAAAACATACAAGCACA 57.340 26.923 0.00 0.00 0.00 4.57
309 310 8.836268 AATCAAATGAAAACATACAAGCACAT 57.164 26.923 0.00 0.00 0.00 3.21
310 311 8.836268 ATCAAATGAAAACATACAAGCACATT 57.164 26.923 0.00 0.00 0.00 2.71
311 312 8.296799 TCAAATGAAAACATACAAGCACATTC 57.703 30.769 0.00 0.00 0.00 2.67
312 313 7.924947 TCAAATGAAAACATACAAGCACATTCA 59.075 29.630 0.00 0.00 0.00 2.57
313 314 7.642071 AATGAAAACATACAAGCACATTCAC 57.358 32.000 0.00 0.00 0.00 3.18
314 315 6.141560 TGAAAACATACAAGCACATTCACA 57.858 33.333 0.00 0.00 0.00 3.58
315 316 5.976534 TGAAAACATACAAGCACATTCACAC 59.023 36.000 0.00 0.00 0.00 3.82
316 317 5.512753 AAACATACAAGCACATTCACACA 57.487 34.783 0.00 0.00 0.00 3.72
317 318 5.710513 AACATACAAGCACATTCACACAT 57.289 34.783 0.00 0.00 0.00 3.21
318 319 6.816134 AACATACAAGCACATTCACACATA 57.184 33.333 0.00 0.00 0.00 2.29
319 320 6.816134 ACATACAAGCACATTCACACATAA 57.184 33.333 0.00 0.00 0.00 1.90
320 321 7.213216 ACATACAAGCACATTCACACATAAA 57.787 32.000 0.00 0.00 0.00 1.40
321 322 7.083858 ACATACAAGCACATTCACACATAAAC 58.916 34.615 0.00 0.00 0.00 2.01
322 323 5.512753 ACAAGCACATTCACACATAAACA 57.487 34.783 0.00 0.00 0.00 2.83
323 324 5.522456 ACAAGCACATTCACACATAAACAG 58.478 37.500 0.00 0.00 0.00 3.16
324 325 5.299028 ACAAGCACATTCACACATAAACAGA 59.701 36.000 0.00 0.00 0.00 3.41
325 326 5.362556 AGCACATTCACACATAAACAGAC 57.637 39.130 0.00 0.00 0.00 3.51
326 327 4.083855 AGCACATTCACACATAAACAGACG 60.084 41.667 0.00 0.00 0.00 4.18
327 328 4.151070 CACATTCACACATAAACAGACGC 58.849 43.478 0.00 0.00 0.00 5.19
328 329 4.065088 ACATTCACACATAAACAGACGCT 58.935 39.130 0.00 0.00 0.00 5.07
329 330 4.083855 ACATTCACACATAAACAGACGCTG 60.084 41.667 5.47 5.47 37.52 5.18
330 331 3.378911 TCACACATAAACAGACGCTGA 57.621 42.857 12.77 0.00 35.18 4.26
331 332 3.317150 TCACACATAAACAGACGCTGAG 58.683 45.455 12.77 1.94 35.18 3.35
332 333 3.059884 CACACATAAACAGACGCTGAGT 58.940 45.455 12.77 3.90 35.18 3.41
333 334 4.022676 TCACACATAAACAGACGCTGAGTA 60.023 41.667 12.77 5.63 35.18 2.59
334 335 4.090066 CACACATAAACAGACGCTGAGTAC 59.910 45.833 12.77 0.00 35.18 2.73
335 336 4.022242 ACACATAAACAGACGCTGAGTACT 60.022 41.667 12.77 0.00 35.18 2.73
336 337 4.324669 CACATAAACAGACGCTGAGTACTG 59.675 45.833 0.00 0.00 35.18 2.74
337 338 1.784525 AAACAGACGCTGAGTACTGC 58.215 50.000 0.00 0.00 35.18 4.40
338 339 0.673985 AACAGACGCTGAGTACTGCA 59.326 50.000 0.00 0.00 40.22 4.41
339 340 0.242286 ACAGACGCTGAGTACTGCAG 59.758 55.000 13.48 13.48 40.22 4.41
346 347 1.479709 CTGAGTACTGCAGCCCTAGT 58.520 55.000 15.27 1.26 0.00 2.57
347 348 2.656002 CTGAGTACTGCAGCCCTAGTA 58.344 52.381 15.27 0.00 0.00 1.82
348 349 2.621055 CTGAGTACTGCAGCCCTAGTAG 59.379 54.545 15.27 5.59 30.59 2.57
349 350 2.025226 TGAGTACTGCAGCCCTAGTAGT 60.025 50.000 15.27 0.62 36.14 2.73
350 351 3.201487 TGAGTACTGCAGCCCTAGTAGTA 59.799 47.826 15.27 0.00 34.18 1.82
351 352 3.816523 GAGTACTGCAGCCCTAGTAGTAG 59.183 52.174 15.27 0.00 35.37 2.57
352 353 1.404843 ACTGCAGCCCTAGTAGTAGC 58.595 55.000 15.27 0.00 29.93 3.58
353 354 1.342076 ACTGCAGCCCTAGTAGTAGCA 60.342 52.381 15.27 7.31 29.93 3.49
354 355 1.967066 CTGCAGCCCTAGTAGTAGCAT 59.033 52.381 0.00 0.00 0.00 3.79
355 356 3.157881 CTGCAGCCCTAGTAGTAGCATA 58.842 50.000 0.00 0.00 0.00 3.14
356 357 3.766591 CTGCAGCCCTAGTAGTAGCATAT 59.233 47.826 0.00 0.00 0.00 1.78
357 358 4.160329 TGCAGCCCTAGTAGTAGCATATT 58.840 43.478 10.96 0.00 0.00 1.28
358 359 5.330233 TGCAGCCCTAGTAGTAGCATATTA 58.670 41.667 10.96 0.00 0.00 0.98
359 360 5.419155 TGCAGCCCTAGTAGTAGCATATTAG 59.581 44.000 10.96 0.00 0.00 1.73
360 361 5.652891 GCAGCCCTAGTAGTAGCATATTAGA 59.347 44.000 10.96 0.00 0.00 2.10
361 362 6.404954 GCAGCCCTAGTAGTAGCATATTAGAC 60.405 46.154 10.96 0.00 0.00 2.59
362 363 6.659668 CAGCCCTAGTAGTAGCATATTAGACA 59.340 42.308 10.96 0.00 0.00 3.41
363 364 6.660094 AGCCCTAGTAGTAGCATATTAGACAC 59.340 42.308 10.96 0.00 0.00 3.67
364 365 6.660094 GCCCTAGTAGTAGCATATTAGACACT 59.340 42.308 0.00 0.00 0.00 3.55
365 366 7.828223 GCCCTAGTAGTAGCATATTAGACACTA 59.172 40.741 0.00 0.00 0.00 2.74
366 367 9.736414 CCCTAGTAGTAGCATATTAGACACTAA 57.264 37.037 0.00 0.00 0.00 2.24
401 402 6.969828 ATCCAATGAACTCTTCTTAACGAC 57.030 37.500 0.00 0.00 0.00 4.34
402 403 6.097915 TCCAATGAACTCTTCTTAACGACT 57.902 37.500 0.00 0.00 0.00 4.18
403 404 5.926542 TCCAATGAACTCTTCTTAACGACTG 59.073 40.000 0.00 0.00 0.00 3.51
404 405 5.926542 CCAATGAACTCTTCTTAACGACTGA 59.073 40.000 0.00 0.00 0.00 3.41
405 406 6.128795 CCAATGAACTCTTCTTAACGACTGAC 60.129 42.308 0.00 0.00 0.00 3.51
406 407 5.769484 TGAACTCTTCTTAACGACTGACT 57.231 39.130 0.00 0.00 0.00 3.41
407 408 5.520632 TGAACTCTTCTTAACGACTGACTG 58.479 41.667 0.00 0.00 0.00 3.51
408 409 5.067413 TGAACTCTTCTTAACGACTGACTGT 59.933 40.000 0.00 0.00 0.00 3.55
409 410 6.261603 TGAACTCTTCTTAACGACTGACTGTA 59.738 38.462 0.00 0.00 0.00 2.74
410 411 6.821031 ACTCTTCTTAACGACTGACTGTAT 57.179 37.500 0.00 0.00 0.00 2.29
411 412 6.844254 ACTCTTCTTAACGACTGACTGTATC 58.156 40.000 0.00 0.00 0.00 2.24
412 413 6.655848 ACTCTTCTTAACGACTGACTGTATCT 59.344 38.462 0.00 0.00 0.00 1.98
413 414 7.074507 TCTTCTTAACGACTGACTGTATCTC 57.925 40.000 0.00 0.00 0.00 2.75
414 415 5.814764 TCTTAACGACTGACTGTATCTCC 57.185 43.478 0.00 0.00 0.00 3.71
415 416 4.639310 TCTTAACGACTGACTGTATCTCCC 59.361 45.833 0.00 0.00 0.00 4.30
416 417 2.509166 ACGACTGACTGTATCTCCCA 57.491 50.000 0.00 0.00 0.00 4.37
417 418 2.093106 ACGACTGACTGTATCTCCCAC 58.907 52.381 0.00 0.00 0.00 4.61
418 419 2.092323 CGACTGACTGTATCTCCCACA 58.908 52.381 0.00 0.00 0.00 4.17
420 421 1.827969 ACTGACTGTATCTCCCACAGC 59.172 52.381 2.51 0.00 45.96 4.40
421 422 1.827344 CTGACTGTATCTCCCACAGCA 59.173 52.381 2.51 2.01 45.96 4.41
422 423 2.234661 CTGACTGTATCTCCCACAGCAA 59.765 50.000 2.51 0.00 45.96 3.91
423 424 2.028112 TGACTGTATCTCCCACAGCAAC 60.028 50.000 2.51 0.00 45.96 4.17
424 425 1.977854 ACTGTATCTCCCACAGCAACA 59.022 47.619 2.51 0.00 45.96 3.33
425 426 2.027745 ACTGTATCTCCCACAGCAACAG 60.028 50.000 2.51 0.00 45.96 3.16
426 427 1.339055 TGTATCTCCCACAGCAACAGC 60.339 52.381 0.00 0.00 0.00 4.40
427 428 0.253044 TATCTCCCACAGCAACAGCC 59.747 55.000 0.00 0.00 0.00 4.85
453 454 2.165437 GGCTTCACTGTCTCTACTCCTG 59.835 54.545 0.00 0.00 0.00 3.86
470 471 1.691196 CTGGGCTTCAACTTCAACCA 58.309 50.000 0.00 0.00 0.00 3.67
548 549 3.775654 GGGACCTCTGCCCGTCTG 61.776 72.222 0.00 0.00 35.50 3.51
549 550 4.459089 GGACCTCTGCCCGTCTGC 62.459 72.222 0.00 0.00 0.00 4.26
550 551 4.459089 GACCTCTGCCCGTCTGCC 62.459 72.222 0.00 0.00 0.00 4.85
664 665 1.072965 GGAGGCAAAGGATGATCGGAT 59.927 52.381 0.00 0.00 0.00 4.18
707 708 2.290464 CAAGACCCAACAAACGGTGTA 58.710 47.619 0.00 0.00 40.60 2.90
710 711 2.684374 AGACCCAACAAACGGTGTAAAC 59.316 45.455 0.00 0.00 40.60 2.01
723 724 9.790433 CAAACGGTGTAAACAATTAAATTCATG 57.210 29.630 0.00 0.00 0.00 3.07
771 772 6.121776 TGATTGAAGTTAGGCAGAGGTAAA 57.878 37.500 0.00 0.00 0.00 2.01
811 812 4.055360 TGTCATCGAATTAATGGCGGTAG 58.945 43.478 10.06 3.06 31.28 3.18
814 815 5.118203 GTCATCGAATTAATGGCGGTAGTAC 59.882 44.000 10.06 0.00 0.00 2.73
817 818 5.417811 TCGAATTAATGGCGGTAGTACAAA 58.582 37.500 2.06 0.00 0.00 2.83
820 821 6.849305 CGAATTAATGGCGGTAGTACAAATTC 59.151 38.462 2.06 5.12 0.00 2.17
869 871 2.926779 AGTGAGCTGAGCAGGCCA 60.927 61.111 7.39 0.00 0.00 5.36
877 879 3.424105 GAGCAGGCCATTCCCCCT 61.424 66.667 5.01 0.00 34.51 4.79
897 899 1.076332 GCCCGCGGTTATATAAGCAG 58.924 55.000 26.12 14.83 33.54 4.24
990 994 1.738099 CTGCCGTCTTCAACTCCGG 60.738 63.158 0.00 0.00 43.22 5.14
1109 1113 4.355720 CAGGGGGAAGCAGCAGCA 62.356 66.667 3.17 0.00 45.49 4.41
1110 1114 4.044439 AGGGGGAAGCAGCAGCAG 62.044 66.667 3.17 0.00 45.49 4.24
1233 1237 2.585247 GCGGTCGGCAGGTATGTC 60.585 66.667 0.00 0.00 42.87 3.06
1235 1239 2.717044 CGGTCGGCAGGTATGTCCA 61.717 63.158 0.00 0.00 39.02 4.02
1244 1248 3.019564 GCAGGTATGTCCAGAGCATTTT 58.980 45.455 0.00 0.00 39.02 1.82
1246 1250 3.379372 CAGGTATGTCCAGAGCATTTTGG 59.621 47.826 0.00 0.00 39.02 3.28
1249 1253 4.220602 GGTATGTCCAGAGCATTTTGGTTT 59.779 41.667 0.00 0.00 35.89 3.27
1250 1254 4.525912 ATGTCCAGAGCATTTTGGTTTC 57.474 40.909 0.00 0.00 35.89 2.78
1260 1264 4.347583 AGCATTTTGGTTTCTTTCCCATCA 59.652 37.500 0.00 0.00 0.00 3.07
1275 1279 1.298602 CATCATTGGCGTCGAATGGA 58.701 50.000 10.76 0.00 32.57 3.41
1297 1301 2.322355 AGAGATTTGACGCCATCCTG 57.678 50.000 0.00 0.00 0.00 3.86
1298 1302 0.659957 GAGATTTGACGCCATCCTGC 59.340 55.000 0.00 0.00 0.00 4.85
1299 1303 0.749454 AGATTTGACGCCATCCTGCC 60.749 55.000 0.00 0.00 0.00 4.85
1300 1304 1.728490 GATTTGACGCCATCCTGCCC 61.728 60.000 0.00 0.00 0.00 5.36
1304 1308 4.115199 ACGCCATCCTGCCCTTCC 62.115 66.667 0.00 0.00 0.00 3.46
1311 1320 1.821136 CATCCTGCCCTTCCTTTGTTC 59.179 52.381 0.00 0.00 0.00 3.18
1581 1799 4.967084 AGCAAACCCATGGTATATACGA 57.033 40.909 11.73 3.34 33.12 3.43
1623 1846 6.072175 TGGGTAATTTTAGTCAGACATGTTGC 60.072 38.462 0.00 0.00 0.00 4.17
1625 1848 5.391312 AATTTTAGTCAGACATGTTGCCC 57.609 39.130 0.00 0.00 0.00 5.36
1768 1999 6.934645 TGTATAGTACAGCCCTGCAAATAATC 59.065 38.462 0.00 0.00 34.06 1.75
1775 2006 3.633986 AGCCCTGCAAATAATCTTAGCAC 59.366 43.478 0.00 0.00 0.00 4.40
1787 2018 9.826574 AAATAATCTTAGCACACTTTCGGTATA 57.173 29.630 0.00 0.00 0.00 1.47
1811 2042 4.823790 TTTTTGCCTTTACCGAGAAGAC 57.176 40.909 0.00 0.00 0.00 3.01
1846 2077 1.070134 CTTTCGGTGTCCAACTCCTGA 59.930 52.381 0.00 0.00 29.93 3.86
1878 2109 2.227194 AGTAAACTTTTGCCGTCCAGG 58.773 47.619 0.00 0.00 44.97 4.45
2035 2267 2.642807 CCACCTTTTCCAGAGAACCCTA 59.357 50.000 0.00 0.00 0.00 3.53
2036 2268 3.073946 CCACCTTTTCCAGAGAACCCTAA 59.926 47.826 0.00 0.00 0.00 2.69
2145 2380 6.058833 TGTCCAGTTATTAAGAGTTGTTGCA 58.941 36.000 0.00 0.00 0.00 4.08
2168 2403 2.434331 TGGAACAAGAAGCCCCCG 59.566 61.111 0.00 0.00 31.92 5.73
2169 2404 2.150719 TGGAACAAGAAGCCCCCGA 61.151 57.895 0.00 0.00 31.92 5.14
2170 2405 1.377333 GGAACAAGAAGCCCCCGAG 60.377 63.158 0.00 0.00 0.00 4.63
2184 2434 2.290323 CCCCCGAGAAGAATCTTGTGTT 60.290 50.000 0.00 0.00 35.54 3.32
2431 2681 6.295067 GGGTCATAAACTGTAATGCAAAGGTT 60.295 38.462 0.00 0.00 0.00 3.50
2486 2736 8.937634 AACATATACAAGAAACTAACCTACCG 57.062 34.615 0.00 0.00 0.00 4.02
2514 2764 5.316770 CACTTAGCTTCTATGCAACGAAAC 58.683 41.667 0.00 0.00 34.99 2.78
2515 2765 5.120830 CACTTAGCTTCTATGCAACGAAACT 59.879 40.000 0.00 0.00 34.99 2.66
2516 2766 6.310467 CACTTAGCTTCTATGCAACGAAACTA 59.690 38.462 0.00 0.00 34.99 2.24
2517 2767 6.531948 ACTTAGCTTCTATGCAACGAAACTAG 59.468 38.462 0.00 0.00 34.99 2.57
2518 2768 5.073311 AGCTTCTATGCAACGAAACTAGA 57.927 39.130 0.00 0.00 34.99 2.43
2519 2769 4.865365 AGCTTCTATGCAACGAAACTAGAC 59.135 41.667 0.00 0.00 34.99 2.59
2520 2770 4.625742 GCTTCTATGCAACGAAACTAGACA 59.374 41.667 0.00 0.00 0.00 3.41
2556 2806 4.095483 GGCATCATTCACAACTAAGTCTGG 59.905 45.833 0.00 0.00 0.00 3.86
2722 2975 3.201045 GGAAAGGGAATCCTAAGTGCTCT 59.799 47.826 0.00 0.00 44.07 4.09
2760 3015 0.663153 ACCTCGCAGCACTTGTTTTC 59.337 50.000 0.00 0.00 0.00 2.29
2894 3149 4.563786 CCTGGAGGAGAAGAGTTTTACACC 60.564 50.000 0.00 0.00 37.39 4.16
2901 3156 2.032987 AGTTTTACACCGCGGGGG 59.967 61.111 34.23 24.49 43.62 5.40
2958 3213 6.849811 TCGTAATAGAGCTACTTTCGAATTCG 59.150 38.462 21.78 21.78 41.45 3.34
3027 3284 0.618458 TTGTTACTGGGCAGGGCTAG 59.382 55.000 4.67 4.67 0.00 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.920946 AGCCAAGAGATTTTTAGATAACCATTA 57.079 29.630 0.00 0.00 0.00 1.90
19 20 8.829373 AGCCAAGAGATTTTTAGATAACCATT 57.171 30.769 0.00 0.00 0.00 3.16
20 21 8.829373 AAGCCAAGAGATTTTTAGATAACCAT 57.171 30.769 0.00 0.00 0.00 3.55
21 22 8.109634 AGAAGCCAAGAGATTTTTAGATAACCA 58.890 33.333 0.00 0.00 0.00 3.67
22 23 8.512966 AGAAGCCAAGAGATTTTTAGATAACC 57.487 34.615 0.00 0.00 0.00 2.85
23 24 9.167311 TGAGAAGCCAAGAGATTTTTAGATAAC 57.833 33.333 0.00 0.00 0.00 1.89
24 25 9.911788 ATGAGAAGCCAAGAGATTTTTAGATAA 57.088 29.630 0.00 0.00 0.00 1.75
25 26 9.553064 GATGAGAAGCCAAGAGATTTTTAGATA 57.447 33.333 0.00 0.00 0.00 1.98
26 27 7.501892 GGATGAGAAGCCAAGAGATTTTTAGAT 59.498 37.037 0.00 0.00 0.00 1.98
27 28 6.825721 GGATGAGAAGCCAAGAGATTTTTAGA 59.174 38.462 0.00 0.00 0.00 2.10
28 29 6.827762 AGGATGAGAAGCCAAGAGATTTTTAG 59.172 38.462 0.00 0.00 0.00 1.85
29 30 6.725364 AGGATGAGAAGCCAAGAGATTTTTA 58.275 36.000 0.00 0.00 0.00 1.52
30 31 5.578073 AGGATGAGAAGCCAAGAGATTTTT 58.422 37.500 0.00 0.00 0.00 1.94
31 32 5.190357 AGGATGAGAAGCCAAGAGATTTT 57.810 39.130 0.00 0.00 0.00 1.82
32 33 4.858965 AGGATGAGAAGCCAAGAGATTT 57.141 40.909 0.00 0.00 0.00 2.17
33 34 6.512514 AATAGGATGAGAAGCCAAGAGATT 57.487 37.500 0.00 0.00 0.00 2.40
34 35 7.811482 ATAATAGGATGAGAAGCCAAGAGAT 57.189 36.000 0.00 0.00 0.00 2.75
35 36 7.952930 AGTATAATAGGATGAGAAGCCAAGAGA 59.047 37.037 0.00 0.00 0.00 3.10
36 37 8.133024 AGTATAATAGGATGAGAAGCCAAGAG 57.867 38.462 0.00 0.00 0.00 2.85
37 38 9.249053 CTAGTATAATAGGATGAGAAGCCAAGA 57.751 37.037 0.00 0.00 0.00 3.02
38 39 9.030452 ACTAGTATAATAGGATGAGAAGCCAAG 57.970 37.037 11.63 0.00 0.00 3.61
39 40 8.958060 ACTAGTATAATAGGATGAGAAGCCAA 57.042 34.615 11.63 0.00 0.00 4.52
40 41 9.688091 CTACTAGTATAATAGGATGAGAAGCCA 57.312 37.037 11.63 0.00 0.00 4.75
41 42 9.689501 ACTACTAGTATAATAGGATGAGAAGCC 57.310 37.037 11.63 0.00 0.00 4.35
56 57 9.653516 ACCTCGCTCCTATATACTACTAGTATA 57.346 37.037 15.42 15.42 44.87 1.47
57 58 8.551682 ACCTCGCTCCTATATACTACTAGTAT 57.448 38.462 12.45 12.45 43.36 2.12
58 59 7.969690 ACCTCGCTCCTATATACTACTAGTA 57.030 40.000 1.89 1.89 34.82 1.82
59 60 6.872585 ACCTCGCTCCTATATACTACTAGT 57.127 41.667 0.00 0.00 0.00 2.57
60 61 8.640651 TGATACCTCGCTCCTATATACTACTAG 58.359 40.741 0.00 0.00 0.00 2.57
61 62 8.420222 GTGATACCTCGCTCCTATATACTACTA 58.580 40.741 0.00 0.00 0.00 1.82
62 63 7.092979 TGTGATACCTCGCTCCTATATACTACT 60.093 40.741 0.00 0.00 32.91 2.57
63 64 7.011295 GTGTGATACCTCGCTCCTATATACTAC 59.989 44.444 0.00 0.00 32.91 2.73
64 65 7.046652 GTGTGATACCTCGCTCCTATATACTA 58.953 42.308 0.00 0.00 32.91 1.82
65 66 5.881443 GTGTGATACCTCGCTCCTATATACT 59.119 44.000 0.00 0.00 32.91 2.12
66 67 5.881443 AGTGTGATACCTCGCTCCTATATAC 59.119 44.000 0.00 0.00 32.91 1.47
67 68 5.880887 CAGTGTGATACCTCGCTCCTATATA 59.119 44.000 0.00 0.00 32.91 0.86
68 69 4.702612 CAGTGTGATACCTCGCTCCTATAT 59.297 45.833 0.00 0.00 32.91 0.86
69 70 4.072839 CAGTGTGATACCTCGCTCCTATA 58.927 47.826 0.00 0.00 32.91 1.31
70 71 2.887783 CAGTGTGATACCTCGCTCCTAT 59.112 50.000 0.00 0.00 32.91 2.57
71 72 2.298610 CAGTGTGATACCTCGCTCCTA 58.701 52.381 0.00 0.00 32.91 2.94
72 73 1.107114 CAGTGTGATACCTCGCTCCT 58.893 55.000 0.00 0.00 32.91 3.69
73 74 0.818296 ACAGTGTGATACCTCGCTCC 59.182 55.000 0.00 0.00 32.91 4.70
74 75 1.472878 TCACAGTGTGATACCTCGCTC 59.527 52.381 22.06 0.00 37.67 5.03
75 76 1.545841 TCACAGTGTGATACCTCGCT 58.454 50.000 22.06 0.00 37.67 4.93
76 77 1.993370 GTTCACAGTGTGATACCTCGC 59.007 52.381 25.97 7.61 42.40 5.03
77 78 3.297830 TGTTCACAGTGTGATACCTCG 57.702 47.619 25.97 0.00 42.40 4.63
78 79 4.569943 ACATGTTCACAGTGTGATACCTC 58.430 43.478 25.97 14.13 42.40 3.85
79 80 4.284490 AGACATGTTCACAGTGTGATACCT 59.716 41.667 25.97 15.80 42.40 3.08
80 81 4.569943 AGACATGTTCACAGTGTGATACC 58.430 43.478 25.97 16.72 42.40 2.73
81 82 5.106948 CCAAGACATGTTCACAGTGTGATAC 60.107 44.000 25.97 23.33 42.40 2.24
82 83 4.996758 CCAAGACATGTTCACAGTGTGATA 59.003 41.667 25.97 18.05 42.40 2.15
83 84 3.817084 CCAAGACATGTTCACAGTGTGAT 59.183 43.478 25.97 11.36 42.40 3.06
84 85 3.205338 CCAAGACATGTTCACAGTGTGA 58.795 45.455 22.06 22.06 41.09 3.58
85 86 2.287188 GCCAAGACATGTTCACAGTGTG 60.287 50.000 17.53 17.53 34.45 3.82
86 87 1.949525 GCCAAGACATGTTCACAGTGT 59.050 47.619 0.00 0.00 0.00 3.55
87 88 1.069703 CGCCAAGACATGTTCACAGTG 60.070 52.381 0.00 0.00 0.00 3.66
88 89 1.229428 CGCCAAGACATGTTCACAGT 58.771 50.000 0.00 0.00 0.00 3.55
89 90 0.518636 CCGCCAAGACATGTTCACAG 59.481 55.000 0.00 0.00 0.00 3.66
90 91 1.514678 GCCGCCAAGACATGTTCACA 61.515 55.000 0.00 0.00 0.00 3.58
91 92 1.210155 GCCGCCAAGACATGTTCAC 59.790 57.895 0.00 0.00 0.00 3.18
92 93 0.537143 AAGCCGCCAAGACATGTTCA 60.537 50.000 0.00 0.00 0.00 3.18
93 94 0.109597 CAAGCCGCCAAGACATGTTC 60.110 55.000 0.00 0.00 0.00 3.18
94 95 1.526575 CCAAGCCGCCAAGACATGTT 61.527 55.000 0.00 0.00 0.00 2.71
95 96 1.973281 CCAAGCCGCCAAGACATGT 60.973 57.895 0.00 0.00 0.00 3.21
96 97 2.879907 CCAAGCCGCCAAGACATG 59.120 61.111 0.00 0.00 0.00 3.21
97 98 3.064324 GCCAAGCCGCCAAGACAT 61.064 61.111 0.00 0.00 0.00 3.06
108 109 6.641169 AATAGCTTATAAAGAAGGCCAAGC 57.359 37.500 5.01 8.95 38.88 4.01
124 125 8.135529 GCGATTAGGACCAAAATTTAATAGCTT 58.864 33.333 0.00 0.00 32.89 3.74
125 126 7.255486 GGCGATTAGGACCAAAATTTAATAGCT 60.255 37.037 11.26 0.00 34.71 3.32
126 127 6.861572 GGCGATTAGGACCAAAATTTAATAGC 59.138 38.462 0.00 0.23 34.04 2.97
127 128 8.166422 AGGCGATTAGGACCAAAATTTAATAG 57.834 34.615 0.00 0.00 0.00 1.73
128 129 8.410141 CAAGGCGATTAGGACCAAAATTTAATA 58.590 33.333 0.00 0.00 0.00 0.98
129 130 7.093509 ACAAGGCGATTAGGACCAAAATTTAAT 60.094 33.333 0.00 0.00 0.00 1.40
130 131 6.209788 ACAAGGCGATTAGGACCAAAATTTAA 59.790 34.615 0.00 0.00 0.00 1.52
131 132 5.712917 ACAAGGCGATTAGGACCAAAATTTA 59.287 36.000 0.00 0.00 0.00 1.40
132 133 4.526650 ACAAGGCGATTAGGACCAAAATTT 59.473 37.500 0.00 0.00 0.00 1.82
133 134 4.086457 ACAAGGCGATTAGGACCAAAATT 58.914 39.130 0.00 0.00 0.00 1.82
134 135 3.697166 ACAAGGCGATTAGGACCAAAAT 58.303 40.909 0.00 0.00 0.00 1.82
135 136 3.149005 ACAAGGCGATTAGGACCAAAA 57.851 42.857 0.00 0.00 0.00 2.44
136 137 2.817258 CAACAAGGCGATTAGGACCAAA 59.183 45.455 0.00 0.00 0.00 3.28
137 138 2.432444 CAACAAGGCGATTAGGACCAA 58.568 47.619 0.00 0.00 0.00 3.67
138 139 1.948611 GCAACAAGGCGATTAGGACCA 60.949 52.381 0.00 0.00 0.00 4.02
139 140 0.733150 GCAACAAGGCGATTAGGACC 59.267 55.000 0.00 0.00 0.00 4.46
149 150 4.440127 CCCATGGCGCAACAAGGC 62.440 66.667 10.83 0.00 0.00 4.35
150 151 4.440127 GCCCATGGCGCAACAAGG 62.440 66.667 10.83 5.23 39.62 3.61
160 161 1.205417 GATTTCCTGTTGTGCCCATGG 59.795 52.381 4.14 4.14 0.00 3.66
161 162 1.205417 GGATTTCCTGTTGTGCCCATG 59.795 52.381 0.00 0.00 0.00 3.66
162 163 1.560505 GGATTTCCTGTTGTGCCCAT 58.439 50.000 0.00 0.00 0.00 4.00
163 164 0.893270 CGGATTTCCTGTTGTGCCCA 60.893 55.000 0.00 0.00 0.00 5.36
164 165 1.595093 CCGGATTTCCTGTTGTGCCC 61.595 60.000 0.00 0.00 0.00 5.36
165 166 0.893727 ACCGGATTTCCTGTTGTGCC 60.894 55.000 9.46 0.00 28.50 5.01
166 167 0.240945 CACCGGATTTCCTGTTGTGC 59.759 55.000 9.46 0.00 30.69 4.57
167 168 1.890876 TCACCGGATTTCCTGTTGTG 58.109 50.000 9.46 0.00 30.69 3.33
168 169 2.105821 TCTTCACCGGATTTCCTGTTGT 59.894 45.455 9.46 0.00 30.69 3.32
169 170 2.778299 TCTTCACCGGATTTCCTGTTG 58.222 47.619 9.46 0.00 30.69 3.33
170 171 3.721087 ATCTTCACCGGATTTCCTGTT 57.279 42.857 9.46 0.00 30.69 3.16
171 172 4.469945 TCTTATCTTCACCGGATTTCCTGT 59.530 41.667 9.46 0.00 33.52 4.00
172 173 4.811557 GTCTTATCTTCACCGGATTTCCTG 59.188 45.833 9.46 0.00 0.00 3.86
173 174 4.469945 TGTCTTATCTTCACCGGATTTCCT 59.530 41.667 9.46 0.00 0.00 3.36
174 175 4.766375 TGTCTTATCTTCACCGGATTTCC 58.234 43.478 9.46 0.00 0.00 3.13
175 176 5.661458 TCTGTCTTATCTTCACCGGATTTC 58.339 41.667 9.46 0.00 0.00 2.17
176 177 5.395768 CCTCTGTCTTATCTTCACCGGATTT 60.396 44.000 9.46 0.00 0.00 2.17
177 178 4.100189 CCTCTGTCTTATCTTCACCGGATT 59.900 45.833 9.46 0.00 0.00 3.01
178 179 3.639094 CCTCTGTCTTATCTTCACCGGAT 59.361 47.826 9.46 0.00 0.00 4.18
179 180 3.024547 CCTCTGTCTTATCTTCACCGGA 58.975 50.000 9.46 0.00 0.00 5.14
180 181 2.101582 CCCTCTGTCTTATCTTCACCGG 59.898 54.545 0.00 0.00 0.00 5.28
181 182 3.024547 TCCCTCTGTCTTATCTTCACCG 58.975 50.000 0.00 0.00 0.00 4.94
182 183 4.468153 ACTTCCCTCTGTCTTATCTTCACC 59.532 45.833 0.00 0.00 0.00 4.02
183 184 5.669164 ACTTCCCTCTGTCTTATCTTCAC 57.331 43.478 0.00 0.00 0.00 3.18
184 185 5.187967 GGAACTTCCCTCTGTCTTATCTTCA 59.812 44.000 0.00 0.00 0.00 3.02
185 186 5.187967 TGGAACTTCCCTCTGTCTTATCTTC 59.812 44.000 5.30 0.00 35.03 2.87
186 187 5.094387 TGGAACTTCCCTCTGTCTTATCTT 58.906 41.667 5.30 0.00 35.03 2.40
187 188 4.689062 TGGAACTTCCCTCTGTCTTATCT 58.311 43.478 5.30 0.00 35.03 1.98
188 189 5.129485 TGATGGAACTTCCCTCTGTCTTATC 59.871 44.000 12.74 4.14 35.03 1.75
189 190 5.032846 TGATGGAACTTCCCTCTGTCTTAT 58.967 41.667 12.74 0.00 35.03 1.73
190 191 4.223032 GTGATGGAACTTCCCTCTGTCTTA 59.777 45.833 12.74 0.00 35.03 2.10
191 192 3.008485 GTGATGGAACTTCCCTCTGTCTT 59.992 47.826 12.74 0.00 35.03 3.01
192 193 2.569404 GTGATGGAACTTCCCTCTGTCT 59.431 50.000 12.74 0.00 35.03 3.41
193 194 2.355209 GGTGATGGAACTTCCCTCTGTC 60.355 54.545 12.74 5.38 35.03 3.51
194 195 1.630878 GGTGATGGAACTTCCCTCTGT 59.369 52.381 12.74 0.00 35.03 3.41
195 196 1.912043 AGGTGATGGAACTTCCCTCTG 59.088 52.381 12.74 0.00 35.03 3.35
196 197 2.350863 AGGTGATGGAACTTCCCTCT 57.649 50.000 12.74 0.00 35.03 3.69
197 198 2.436173 CCTAGGTGATGGAACTTCCCTC 59.564 54.545 0.00 5.81 35.03 4.30
198 199 2.225908 ACCTAGGTGATGGAACTTCCCT 60.226 50.000 15.42 0.00 35.03 4.20
199 200 2.197465 ACCTAGGTGATGGAACTTCCC 58.803 52.381 15.42 0.00 35.03 3.97
200 201 4.302559 AAACCTAGGTGATGGAACTTCC 57.697 45.455 17.14 0.20 36.96 3.46
201 202 5.354513 GCTAAAACCTAGGTGATGGAACTTC 59.645 44.000 17.14 0.00 0.00 3.01
202 203 5.014228 AGCTAAAACCTAGGTGATGGAACTT 59.986 40.000 17.14 0.00 0.00 2.66
203 204 4.536489 AGCTAAAACCTAGGTGATGGAACT 59.464 41.667 17.14 4.78 0.00 3.01
204 205 4.844884 AGCTAAAACCTAGGTGATGGAAC 58.155 43.478 17.14 2.34 0.00 3.62
205 206 4.382685 CGAGCTAAAACCTAGGTGATGGAA 60.383 45.833 17.14 0.00 0.00 3.53
206 207 3.132289 CGAGCTAAAACCTAGGTGATGGA 59.868 47.826 17.14 0.00 0.00 3.41
207 208 3.458189 CGAGCTAAAACCTAGGTGATGG 58.542 50.000 17.14 10.57 0.00 3.51
208 209 3.118738 ACCGAGCTAAAACCTAGGTGATG 60.119 47.826 17.14 7.60 37.01 3.07
209 210 3.105283 ACCGAGCTAAAACCTAGGTGAT 58.895 45.455 17.14 10.12 37.01 3.06
210 211 2.532843 ACCGAGCTAAAACCTAGGTGA 58.467 47.619 17.14 3.04 37.01 4.02
211 212 4.667519 ATACCGAGCTAAAACCTAGGTG 57.332 45.455 17.14 3.58 38.52 4.00
212 213 5.188359 TGAAATACCGAGCTAAAACCTAGGT 59.812 40.000 9.21 9.21 40.66 3.08
213 214 5.667466 TGAAATACCGAGCTAAAACCTAGG 58.333 41.667 7.41 7.41 0.00 3.02
214 215 5.234543 GCTGAAATACCGAGCTAAAACCTAG 59.765 44.000 0.00 0.00 0.00 3.02
215 216 5.114081 GCTGAAATACCGAGCTAAAACCTA 58.886 41.667 0.00 0.00 0.00 3.08
216 217 3.939592 GCTGAAATACCGAGCTAAAACCT 59.060 43.478 0.00 0.00 0.00 3.50
217 218 3.064958 GGCTGAAATACCGAGCTAAAACC 59.935 47.826 0.00 0.00 33.03 3.27
218 219 3.064958 GGGCTGAAATACCGAGCTAAAAC 59.935 47.826 0.00 0.00 33.03 2.43
219 220 3.275999 GGGCTGAAATACCGAGCTAAAA 58.724 45.455 0.00 0.00 33.03 1.52
220 221 2.914059 GGGCTGAAATACCGAGCTAAA 58.086 47.619 0.00 0.00 33.03 1.85
221 222 2.614829 GGGCTGAAATACCGAGCTAA 57.385 50.000 0.00 0.00 33.03 3.09
228 229 0.814010 ATCGTGCGGGCTGAAATACC 60.814 55.000 0.00 0.00 0.00 2.73
229 230 0.582005 GATCGTGCGGGCTGAAATAC 59.418 55.000 0.00 0.00 0.00 1.89
230 231 0.464036 AGATCGTGCGGGCTGAAATA 59.536 50.000 0.00 0.00 0.00 1.40
231 232 0.464036 TAGATCGTGCGGGCTGAAAT 59.536 50.000 0.00 0.00 0.00 2.17
232 233 0.464036 ATAGATCGTGCGGGCTGAAA 59.536 50.000 0.00 0.00 0.00 2.69
233 234 1.324383 TATAGATCGTGCGGGCTGAA 58.676 50.000 0.00 0.00 0.00 3.02
234 235 1.202348 CATATAGATCGTGCGGGCTGA 59.798 52.381 0.00 0.00 0.00 4.26
235 236 1.202348 TCATATAGATCGTGCGGGCTG 59.798 52.381 0.00 0.00 0.00 4.85
236 237 1.545841 TCATATAGATCGTGCGGGCT 58.454 50.000 0.00 0.00 0.00 5.19
237 238 1.993370 GTTCATATAGATCGTGCGGGC 59.007 52.381 0.00 0.00 0.00 6.13
238 239 2.231478 AGGTTCATATAGATCGTGCGGG 59.769 50.000 0.00 0.00 0.00 6.13
239 240 3.577649 AGGTTCATATAGATCGTGCGG 57.422 47.619 0.00 0.00 0.00 5.69
240 241 4.099120 GCTAGGTTCATATAGATCGTGCG 58.901 47.826 0.00 0.00 0.00 5.34
241 242 5.317733 AGCTAGGTTCATATAGATCGTGC 57.682 43.478 0.00 0.00 0.00 5.34
242 243 8.678199 TGATAAGCTAGGTTCATATAGATCGTG 58.322 37.037 11.11 0.00 0.00 4.35
243 244 8.809468 TGATAAGCTAGGTTCATATAGATCGT 57.191 34.615 11.11 0.00 0.00 3.73
244 245 9.114952 TCTGATAAGCTAGGTTCATATAGATCG 57.885 37.037 11.11 4.26 0.00 3.69
250 251 9.905713 TTGTTTTCTGATAAGCTAGGTTCATAT 57.094 29.630 11.11 0.00 0.00 1.78
251 252 9.733556 TTTGTTTTCTGATAAGCTAGGTTCATA 57.266 29.630 11.11 0.00 0.00 2.15
252 253 8.635765 TTTGTTTTCTGATAAGCTAGGTTCAT 57.364 30.769 11.11 3.62 0.00 2.57
253 254 8.458573 TTTTGTTTTCTGATAAGCTAGGTTCA 57.541 30.769 11.11 3.19 0.00 3.18
254 255 9.181805 GTTTTTGTTTTCTGATAAGCTAGGTTC 57.818 33.333 11.11 0.00 0.00 3.62
255 256 8.691797 TGTTTTTGTTTTCTGATAAGCTAGGTT 58.308 29.630 12.54 12.54 0.00 3.50
256 257 8.232913 TGTTTTTGTTTTCTGATAAGCTAGGT 57.767 30.769 0.00 0.00 0.00 3.08
282 283 9.755804 TGTGCTTGTATGTTTTCATTTGATTTA 57.244 25.926 0.00 0.00 41.25 1.40
283 284 8.659925 TGTGCTTGTATGTTTTCATTTGATTT 57.340 26.923 0.00 0.00 41.25 2.17
284 285 8.836268 ATGTGCTTGTATGTTTTCATTTGATT 57.164 26.923 0.00 0.00 41.25 2.57
285 286 8.836268 AATGTGCTTGTATGTTTTCATTTGAT 57.164 26.923 0.00 0.00 41.25 2.57
286 287 7.924947 TGAATGTGCTTGTATGTTTTCATTTGA 59.075 29.630 0.00 0.00 41.25 2.69
287 288 8.005466 GTGAATGTGCTTGTATGTTTTCATTTG 58.995 33.333 0.00 0.00 41.25 2.32
288 289 7.710044 TGTGAATGTGCTTGTATGTTTTCATTT 59.290 29.630 0.00 0.00 41.25 2.32
289 290 7.169645 GTGTGAATGTGCTTGTATGTTTTCATT 59.830 33.333 0.00 0.00 41.25 2.57
290 291 6.642131 GTGTGAATGTGCTTGTATGTTTTCAT 59.358 34.615 0.00 0.00 43.60 2.57
291 292 5.976534 GTGTGAATGTGCTTGTATGTTTTCA 59.023 36.000 0.00 0.00 0.00 2.69
292 293 5.976534 TGTGTGAATGTGCTTGTATGTTTTC 59.023 36.000 0.00 0.00 0.00 2.29
293 294 5.900425 TGTGTGAATGTGCTTGTATGTTTT 58.100 33.333 0.00 0.00 0.00 2.43
294 295 5.512753 TGTGTGAATGTGCTTGTATGTTT 57.487 34.783 0.00 0.00 0.00 2.83
295 296 5.710513 ATGTGTGAATGTGCTTGTATGTT 57.289 34.783 0.00 0.00 0.00 2.71
296 297 6.816134 TTATGTGTGAATGTGCTTGTATGT 57.184 33.333 0.00 0.00 0.00 2.29
297 298 7.083230 TGTTTATGTGTGAATGTGCTTGTATG 58.917 34.615 0.00 0.00 0.00 2.39
298 299 7.174772 TCTGTTTATGTGTGAATGTGCTTGTAT 59.825 33.333 0.00 0.00 0.00 2.29
299 300 6.484977 TCTGTTTATGTGTGAATGTGCTTGTA 59.515 34.615 0.00 0.00 0.00 2.41
300 301 5.299028 TCTGTTTATGTGTGAATGTGCTTGT 59.701 36.000 0.00 0.00 0.00 3.16
301 302 5.626543 GTCTGTTTATGTGTGAATGTGCTTG 59.373 40.000 0.00 0.00 0.00 4.01
302 303 5.560760 CGTCTGTTTATGTGTGAATGTGCTT 60.561 40.000 0.00 0.00 0.00 3.91
303 304 4.083855 CGTCTGTTTATGTGTGAATGTGCT 60.084 41.667 0.00 0.00 0.00 4.40
304 305 4.151070 CGTCTGTTTATGTGTGAATGTGC 58.849 43.478 0.00 0.00 0.00 4.57
305 306 4.083855 AGCGTCTGTTTATGTGTGAATGTG 60.084 41.667 0.00 0.00 0.00 3.21
306 307 4.065088 AGCGTCTGTTTATGTGTGAATGT 58.935 39.130 0.00 0.00 0.00 2.71
307 308 4.152223 TCAGCGTCTGTTTATGTGTGAATG 59.848 41.667 6.72 0.00 32.61 2.67
308 309 4.314961 TCAGCGTCTGTTTATGTGTGAAT 58.685 39.130 6.72 0.00 32.61 2.57
309 310 3.723260 TCAGCGTCTGTTTATGTGTGAA 58.277 40.909 6.72 0.00 32.61 3.18
310 311 3.243737 ACTCAGCGTCTGTTTATGTGTGA 60.244 43.478 6.72 0.00 32.61 3.58
311 312 3.059884 ACTCAGCGTCTGTTTATGTGTG 58.940 45.455 6.72 0.00 32.61 3.82
312 313 3.386768 ACTCAGCGTCTGTTTATGTGT 57.613 42.857 6.72 0.00 32.61 3.72
313 314 4.324669 CAGTACTCAGCGTCTGTTTATGTG 59.675 45.833 0.00 0.00 32.61 3.21
314 315 4.486090 CAGTACTCAGCGTCTGTTTATGT 58.514 43.478 0.00 0.00 32.61 2.29
315 316 3.304559 GCAGTACTCAGCGTCTGTTTATG 59.695 47.826 0.00 3.50 32.61 1.90
316 317 3.056821 TGCAGTACTCAGCGTCTGTTTAT 60.057 43.478 0.00 0.00 32.61 1.40
317 318 2.295070 TGCAGTACTCAGCGTCTGTTTA 59.705 45.455 0.00 0.00 32.61 2.01
318 319 1.068588 TGCAGTACTCAGCGTCTGTTT 59.931 47.619 0.00 0.00 32.61 2.83
319 320 0.673985 TGCAGTACTCAGCGTCTGTT 59.326 50.000 0.00 0.00 32.61 3.16
320 321 0.242286 CTGCAGTACTCAGCGTCTGT 59.758 55.000 5.25 0.00 32.61 3.41
321 322 1.075425 GCTGCAGTACTCAGCGTCTG 61.075 60.000 22.74 7.05 45.99 3.51
322 323 1.214062 GCTGCAGTACTCAGCGTCT 59.786 57.895 22.74 0.00 45.99 4.18
323 324 3.773974 GCTGCAGTACTCAGCGTC 58.226 61.111 22.74 6.27 45.99 5.19
327 328 1.479709 ACTAGGGCTGCAGTACTCAG 58.520 55.000 16.64 14.43 34.79 3.35
328 329 2.025226 ACTACTAGGGCTGCAGTACTCA 60.025 50.000 16.64 2.73 0.00 3.41
329 330 2.657143 ACTACTAGGGCTGCAGTACTC 58.343 52.381 16.64 0.00 0.00 2.59
330 331 2.830651 ACTACTAGGGCTGCAGTACT 57.169 50.000 16.64 15.69 0.00 2.73
331 332 2.293955 GCTACTACTAGGGCTGCAGTAC 59.706 54.545 16.64 8.81 0.00 2.73
332 333 2.092049 TGCTACTACTAGGGCTGCAGTA 60.092 50.000 16.64 0.00 0.00 2.74
333 334 1.342076 TGCTACTACTAGGGCTGCAGT 60.342 52.381 16.64 0.00 0.00 4.40
334 335 1.403814 TGCTACTACTAGGGCTGCAG 58.596 55.000 10.11 10.11 0.00 4.41
335 336 2.088104 ATGCTACTACTAGGGCTGCA 57.912 50.000 0.50 0.00 0.00 4.41
336 337 4.810191 AATATGCTACTACTAGGGCTGC 57.190 45.455 0.00 0.00 0.00 5.25
337 338 6.659668 TGTCTAATATGCTACTACTAGGGCTG 59.340 42.308 0.00 0.00 0.00 4.85
338 339 6.660094 GTGTCTAATATGCTACTACTAGGGCT 59.340 42.308 0.00 0.00 0.00 5.19
339 340 6.660094 AGTGTCTAATATGCTACTACTAGGGC 59.340 42.308 0.00 0.00 0.00 5.19
340 341 9.736414 TTAGTGTCTAATATGCTACTACTAGGG 57.264 37.037 0.00 0.00 0.00 3.53
375 376 9.099454 GTCGTTAAGAAGAGTTCATTGGATATT 57.901 33.333 0.00 0.00 0.00 1.28
376 377 8.478877 AGTCGTTAAGAAGAGTTCATTGGATAT 58.521 33.333 0.00 0.00 0.00 1.63
377 378 7.759886 CAGTCGTTAAGAAGAGTTCATTGGATA 59.240 37.037 0.00 0.00 0.00 2.59
378 379 6.591834 CAGTCGTTAAGAAGAGTTCATTGGAT 59.408 38.462 0.00 0.00 0.00 3.41
379 380 5.926542 CAGTCGTTAAGAAGAGTTCATTGGA 59.073 40.000 0.00 0.00 0.00 3.53
380 381 5.926542 TCAGTCGTTAAGAAGAGTTCATTGG 59.073 40.000 0.00 0.00 0.00 3.16
381 382 6.642950 AGTCAGTCGTTAAGAAGAGTTCATTG 59.357 38.462 0.00 0.00 0.00 2.82
382 383 6.642950 CAGTCAGTCGTTAAGAAGAGTTCATT 59.357 38.462 0.00 0.00 0.00 2.57
383 384 6.153067 CAGTCAGTCGTTAAGAAGAGTTCAT 58.847 40.000 0.00 0.00 0.00 2.57
384 385 5.067413 ACAGTCAGTCGTTAAGAAGAGTTCA 59.933 40.000 0.00 0.00 0.00 3.18
385 386 5.521544 ACAGTCAGTCGTTAAGAAGAGTTC 58.478 41.667 0.00 0.00 0.00 3.01
386 387 5.517322 ACAGTCAGTCGTTAAGAAGAGTT 57.483 39.130 0.00 0.00 0.00 3.01
387 388 6.655848 AGATACAGTCAGTCGTTAAGAAGAGT 59.344 38.462 0.00 0.00 0.00 3.24
388 389 7.079182 AGATACAGTCAGTCGTTAAGAAGAG 57.921 40.000 0.00 0.00 0.00 2.85
389 390 6.093771 GGAGATACAGTCAGTCGTTAAGAAGA 59.906 42.308 0.00 0.00 0.00 2.87
390 391 6.259638 GGAGATACAGTCAGTCGTTAAGAAG 58.740 44.000 0.00 0.00 0.00 2.85
391 392 5.125097 GGGAGATACAGTCAGTCGTTAAGAA 59.875 44.000 0.00 0.00 0.00 2.52
392 393 4.639310 GGGAGATACAGTCAGTCGTTAAGA 59.361 45.833 0.00 0.00 0.00 2.10
393 394 4.398358 TGGGAGATACAGTCAGTCGTTAAG 59.602 45.833 0.00 0.00 0.00 1.85
394 395 4.157289 GTGGGAGATACAGTCAGTCGTTAA 59.843 45.833 0.00 0.00 0.00 2.01
395 396 3.693085 GTGGGAGATACAGTCAGTCGTTA 59.307 47.826 0.00 0.00 0.00 3.18
396 397 2.492484 GTGGGAGATACAGTCAGTCGTT 59.508 50.000 0.00 0.00 0.00 3.85
397 398 2.093106 GTGGGAGATACAGTCAGTCGT 58.907 52.381 0.00 0.00 0.00 4.34
398 399 2.092323 TGTGGGAGATACAGTCAGTCG 58.908 52.381 0.00 0.00 0.00 4.18
399 400 2.159170 GCTGTGGGAGATACAGTCAGTC 60.159 54.545 6.95 0.00 45.60 3.51
400 401 1.827969 GCTGTGGGAGATACAGTCAGT 59.172 52.381 6.95 0.00 45.60 3.41
401 402 1.827344 TGCTGTGGGAGATACAGTCAG 59.173 52.381 6.95 0.00 45.60 3.51
402 403 1.937191 TGCTGTGGGAGATACAGTCA 58.063 50.000 6.95 3.43 45.60 3.41
403 404 2.028112 TGTTGCTGTGGGAGATACAGTC 60.028 50.000 6.95 1.19 45.60 3.51
404 405 1.977854 TGTTGCTGTGGGAGATACAGT 59.022 47.619 6.95 0.00 45.60 3.55
405 406 2.625737 CTGTTGCTGTGGGAGATACAG 58.374 52.381 0.00 0.00 46.37 2.74
406 407 1.339055 GCTGTTGCTGTGGGAGATACA 60.339 52.381 0.00 0.00 36.03 2.29
407 408 1.373570 GCTGTTGCTGTGGGAGATAC 58.626 55.000 0.00 0.00 36.03 2.24
408 409 0.253044 GGCTGTTGCTGTGGGAGATA 59.747 55.000 0.00 0.00 39.59 1.98
409 410 1.001641 GGCTGTTGCTGTGGGAGAT 60.002 57.895 0.00 0.00 39.59 2.75
410 411 1.993701 TTGGCTGTTGCTGTGGGAGA 61.994 55.000 0.00 0.00 39.59 3.71
411 412 1.529010 TTGGCTGTTGCTGTGGGAG 60.529 57.895 0.00 0.00 39.59 4.30
412 413 1.827789 GTTGGCTGTTGCTGTGGGA 60.828 57.895 0.00 0.00 39.59 4.37
413 414 2.079020 CTGTTGGCTGTTGCTGTGGG 62.079 60.000 0.00 0.00 39.59 4.61
414 415 1.361271 CTGTTGGCTGTTGCTGTGG 59.639 57.895 0.00 0.00 39.59 4.17
415 416 1.361271 CCTGTTGGCTGTTGCTGTG 59.639 57.895 0.00 0.00 39.59 3.66
416 417 3.846180 CCTGTTGGCTGTTGCTGT 58.154 55.556 0.00 0.00 39.59 4.40
426 427 1.071385 AGAGACAGTGAAGCCTGTTGG 59.929 52.381 0.00 0.00 45.46 3.77
427 428 2.540265 AGAGACAGTGAAGCCTGTTG 57.460 50.000 0.00 0.00 45.46 3.33
441 442 1.853963 TGAAGCCCAGGAGTAGAGAC 58.146 55.000 0.00 0.00 0.00 3.36
453 454 1.692411 ACTGGTTGAAGTTGAAGCCC 58.308 50.000 1.77 0.00 0.00 5.19
470 471 1.406069 CGTGGCCTGCTTGAAGATACT 60.406 52.381 3.32 0.00 0.00 2.12
513 514 2.182537 CTGCTTGCCCAAATCGCC 59.817 61.111 0.00 0.00 0.00 5.54
543 544 1.006102 AGTTGAGGTTCGGCAGACG 60.006 57.895 0.00 0.00 46.11 4.18
544 545 0.670854 GGAGTTGAGGTTCGGCAGAC 60.671 60.000 0.00 0.00 0.00 3.51
545 546 1.118965 TGGAGTTGAGGTTCGGCAGA 61.119 55.000 0.00 0.00 0.00 4.26
546 547 0.036010 ATGGAGTTGAGGTTCGGCAG 60.036 55.000 0.00 0.00 0.00 4.85
547 548 0.400213 AATGGAGTTGAGGTTCGGCA 59.600 50.000 0.00 0.00 0.00 5.69
548 549 1.087501 GAATGGAGTTGAGGTTCGGC 58.912 55.000 0.00 0.00 0.00 5.54
549 550 1.003118 TGGAATGGAGTTGAGGTTCGG 59.997 52.381 0.00 0.00 0.00 4.30
550 551 2.472695 TGGAATGGAGTTGAGGTTCG 57.527 50.000 0.00 0.00 0.00 3.95
664 665 3.487626 TGCATAGGCCGGGCATGA 61.488 61.111 30.69 18.69 40.13 3.07
689 690 2.684374 GTTTACACCGTTTGTTGGGTCT 59.316 45.455 0.00 0.00 39.91 3.85
723 724 3.303593 CCAAGATTCATGCATGCGTAGAC 60.304 47.826 22.25 9.39 0.00 2.59
771 772 1.133792 ACACAGTTGGGTGCTAGCTTT 60.134 47.619 17.23 0.00 42.55 3.51
877 879 0.393448 TGCTTATATAACCGCGGGCA 59.607 50.000 31.76 22.97 0.00 5.36
879 881 1.722011 CCTGCTTATATAACCGCGGG 58.278 55.000 31.76 16.20 41.96 6.13
897 899 2.042639 ATGCCATGGGAAGGTGCC 60.043 61.111 11.10 0.00 0.00 5.01
1004 1008 4.428922 CCGTGATGCGTGTGTGCG 62.429 66.667 0.00 0.00 39.32 5.34
1182 1186 1.589630 CATATGGTAGGCCGCGCTA 59.410 57.895 5.56 0.00 37.67 4.26
1233 1237 4.309933 GGAAAGAAACCAAAATGCTCTGG 58.690 43.478 0.00 0.00 38.77 3.86
1235 1239 3.966665 TGGGAAAGAAACCAAAATGCTCT 59.033 39.130 0.00 0.00 32.89 4.09
1260 1264 1.754803 TCTACTCCATTCGACGCCAAT 59.245 47.619 0.00 0.00 0.00 3.16
1275 1279 3.034635 AGGATGGCGTCAAATCTCTACT 58.965 45.455 9.27 0.00 0.00 2.57
1297 1301 0.826256 AACCCGAACAAAGGAAGGGC 60.826 55.000 0.00 0.00 45.75 5.19
1299 1303 1.975660 TCAACCCGAACAAAGGAAGG 58.024 50.000 0.00 0.00 0.00 3.46
1300 1304 3.821033 AGATTCAACCCGAACAAAGGAAG 59.179 43.478 0.00 0.00 36.12 3.46
1304 1308 3.146066 TGGAGATTCAACCCGAACAAAG 58.854 45.455 0.00 0.00 36.12 2.77
1311 1320 0.391130 TCGCTTGGAGATTCAACCCG 60.391 55.000 0.00 0.00 0.00 5.28
1623 1846 0.180171 TGCATTGACCTCGGTATGGG 59.820 55.000 2.09 0.00 0.00 4.00
1625 1848 2.609459 GTCTTGCATTGACCTCGGTATG 59.391 50.000 8.63 0.00 0.00 2.39
1687 1912 2.292828 ACACCTTTCTTGGTCATGGG 57.707 50.000 0.00 0.00 38.45 4.00
1787 2018 6.657541 TGTCTTCTCGGTAAAGGCAAAAATAT 59.342 34.615 0.00 0.00 35.53 1.28
1795 2026 4.034163 GCTAATTGTCTTCTCGGTAAAGGC 59.966 45.833 0.00 0.00 0.00 4.35
1811 2042 3.189287 ACCGAAAGTGAAGCAGCTAATTG 59.811 43.478 0.00 0.00 0.00 2.32
1846 2077 7.574967 CGGCAAAAGTTTACTTCACTTGGATAT 60.575 37.037 0.00 0.00 34.59 1.63
1878 2109 6.601264 TGGATTTGTTAATTTAACGACCGAC 58.399 36.000 13.19 4.54 41.50 4.79
1912 2143 5.862845 AGAGGAGGTGATAATGTTAGCATG 58.137 41.667 0.00 0.00 35.15 4.06
1998 2230 8.300286 GGAAAAGGTGGAGAGAAATTAAAGAAG 58.700 37.037 0.00 0.00 0.00 2.85
2120 2355 6.204688 TGCAACAACTCTTAATAACTGGACAG 59.795 38.462 0.00 0.00 0.00 3.51
2145 2380 3.365472 GGGGCTTCTTGTTCCATATTGT 58.635 45.455 0.00 0.00 0.00 2.71
2164 2399 2.744202 CAACACAAGATTCTTCTCGGGG 59.256 50.000 0.00 0.00 0.00 5.73
2165 2400 3.664107 TCAACACAAGATTCTTCTCGGG 58.336 45.455 0.00 0.00 0.00 5.14
2167 2402 6.718454 AAGATCAACACAAGATTCTTCTCG 57.282 37.500 0.00 0.00 0.00 4.04
2168 2403 8.321650 AGAAAGATCAACACAAGATTCTTCTC 57.678 34.615 0.00 0.00 28.64 2.87
2169 2404 8.156165 AGAGAAAGATCAACACAAGATTCTTCT 58.844 33.333 0.00 0.00 33.27 2.85
2170 2405 8.229137 CAGAGAAAGATCAACACAAGATTCTTC 58.771 37.037 0.00 0.00 0.00 2.87
2184 2434 7.984422 TTTTGAAGTATGCAGAGAAAGATCA 57.016 32.000 0.00 0.00 0.00 2.92
2226 2476 2.135933 ACTTCTTGCAACGCTACACTC 58.864 47.619 0.00 0.00 0.00 3.51
2431 2681 6.778069 TCCTCTTAAGAGAACTCTCACTTTGA 59.222 38.462 30.17 13.12 44.74 2.69
2486 2736 3.009723 TGCATAGAAGCTAAGTGCAACC 58.990 45.455 11.93 0.00 45.94 3.77
2514 2764 2.095718 GCCTTCGCACCTTTTTGTCTAG 60.096 50.000 0.00 0.00 34.03 2.43
2515 2765 1.877443 GCCTTCGCACCTTTTTGTCTA 59.123 47.619 0.00 0.00 34.03 2.59
2516 2766 0.668535 GCCTTCGCACCTTTTTGTCT 59.331 50.000 0.00 0.00 34.03 3.41
2517 2767 0.383949 TGCCTTCGCACCTTTTTGTC 59.616 50.000 0.00 0.00 41.12 3.18
2518 2768 2.499214 TGCCTTCGCACCTTTTTGT 58.501 47.368 0.00 0.00 41.12 2.83
2664 2917 6.907853 TCATCACATCCCTAGTCAAGATAG 57.092 41.667 0.00 0.00 0.00 2.08
2666 2919 6.070021 TGTTTCATCACATCCCTAGTCAAGAT 60.070 38.462 0.00 0.00 0.00 2.40
2722 2975 0.547075 TCTCACGACCCCCACAAAAA 59.453 50.000 0.00 0.00 0.00 1.94
2760 3015 1.475751 CCCTAGCAACTGGGCATGTAG 60.476 57.143 0.00 0.00 36.61 2.74
2870 3125 4.283722 GTGTAAAACTCTTCTCCTCCAGGA 59.716 45.833 0.00 0.00 43.08 3.86
2901 3156 2.026014 CCAACACACAGCCGCAAC 59.974 61.111 0.00 0.00 0.00 4.17
2958 3213 8.214472 GCATTCAAACGAATTTTTAAGAGGTTC 58.786 33.333 0.00 0.00 30.47 3.62
2972 3228 4.681025 GCAGAAAAGATGCATTCAAACGAA 59.319 37.500 0.00 0.00 43.31 3.85
2973 3229 4.022935 AGCAGAAAAGATGCATTCAAACGA 60.023 37.500 0.00 0.00 46.31 3.85
3027 3284 1.905922 GCAGCGTCCTCTTGCTTCAC 61.906 60.000 0.00 0.00 40.03 3.18
3055 3312 4.692930 GCATCTTTGCCCCATCCT 57.307 55.556 0.00 0.00 43.38 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.