Multiple sequence alignment - TraesCS6D01G319100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G319100 chr6D 100.000 2777 0 0 1 2777 427169918 427172694 0.000000e+00 5129
1 TraesCS6D01G319100 chr6D 93.471 291 19 0 189 479 268439689 268439979 1.530000e-117 433
2 TraesCS6D01G319100 chr6D 89.231 195 17 2 1 191 12661743 12661937 9.940000e-60 241
3 TraesCS6D01G319100 chr6A 89.915 1656 91 34 487 2088 571880879 571882512 0.000000e+00 2063
4 TraesCS6D01G319100 chr6A 90.625 544 43 8 2094 2634 571882366 571882904 0.000000e+00 715
5 TraesCS6D01G319100 chr6A 89.865 148 13 2 2631 2777 571882968 571883114 3.650000e-44 189
6 TraesCS6D01G319100 chr6B 89.986 1388 68 31 739 2068 643131175 643132549 0.000000e+00 1727
7 TraesCS6D01G319100 chr6B 91.768 1069 52 18 815 1864 642989372 642990423 0.000000e+00 1454
8 TraesCS6D01G319100 chr6B 86.165 412 39 11 2094 2498 643132426 643132826 1.980000e-116 429
9 TraesCS6D01G319100 chr6B 90.110 182 14 3 1 179 252815900 252815720 1.660000e-57 233
10 TraesCS6D01G319100 chr6B 93.798 129 7 1 679 807 642987436 642987563 2.820000e-45 193
11 TraesCS6D01G319100 chr6B 93.750 112 5 2 2524 2634 643132823 643132933 1.710000e-37 167
12 TraesCS6D01G319100 chr6B 91.011 89 8 0 2631 2719 643132981 643133069 1.350000e-23 121
13 TraesCS6D01G319100 chr3D 86.991 761 70 15 1009 1749 612263743 612264494 0.000000e+00 830
14 TraesCS6D01G319100 chr3D 91.456 316 23 4 163 477 537438986 537439298 5.490000e-117 431
15 TraesCS6D01G319100 chr3D 89.119 193 17 2 1 189 30354022 30354214 1.290000e-58 237
16 TraesCS6D01G319100 chr3B 86.991 761 70 13 1009 1749 826919651 826918900 0.000000e+00 830
17 TraesCS6D01G319100 chr3A 86.597 761 73 14 1009 1749 746900718 746901469 0.000000e+00 813
18 TraesCS6D01G319100 chr3A 90.722 194 15 2 1 191 651594662 651594855 3.550000e-64 255
19 TraesCS6D01G319100 chr1D 94.077 287 17 0 191 477 425605494 425605208 1.180000e-118 436
20 TraesCS6D01G319100 chr1D 93.728 287 18 0 191 477 419515969 419515683 5.490000e-117 431
21 TraesCS6D01G319100 chr1D 78.035 519 99 5 1031 1540 406677000 406676488 2.080000e-81 313
22 TraesCS6D01G319100 chr4D 93.728 287 18 0 191 477 52042269 52041983 5.490000e-117 431
23 TraesCS6D01G319100 chr4D 93.728 287 18 0 191 477 338756854 338756568 5.490000e-117 431
24 TraesCS6D01G319100 chr2D 91.167 317 22 6 163 477 164417400 164417088 2.560000e-115 425
25 TraesCS6D01G319100 chr2D 90.722 194 15 2 1 191 180996921 180997114 3.550000e-64 255
26 TraesCS6D01G319100 chr7D 90.852 317 23 6 163 477 238230085 238230397 1.190000e-113 420
27 TraesCS6D01G319100 chr7D 90.536 317 24 6 163 477 472115647 472115959 5.530000e-112 414
28 TraesCS6D01G319100 chr7D 89.119 193 16 3 1 189 133493875 133493684 4.620000e-58 235
29 TraesCS6D01G319100 chr7D 89.119 193 16 3 1 189 133610624 133610815 4.620000e-58 235
30 TraesCS6D01G319100 chr1B 77.925 530 96 11 1031 1547 546967819 546967298 7.470000e-81 311
31 TraesCS6D01G319100 chr1B 77.438 523 95 12 1031 1540 547178415 547177903 9.730000e-75 291
32 TraesCS6D01G319100 chr1B 89.691 194 17 2 1 191 133252319 133252126 7.680000e-61 244
33 TraesCS6D01G319100 chr7A 90.104 192 16 2 3 191 653005069 653004878 2.140000e-61 246
34 TraesCS6D01G319100 chr5B 87.179 195 19 5 476 665 594199112 594199305 1.670000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G319100 chr6D 427169918 427172694 2776 False 5129.0 5129 100.000 1 2777 1 chr6D.!!$F3 2776
1 TraesCS6D01G319100 chr6A 571880879 571883114 2235 False 989.0 2063 90.135 487 2777 3 chr6A.!!$F1 2290
2 TraesCS6D01G319100 chr6B 642987436 642990423 2987 False 823.5 1454 92.783 679 1864 2 chr6B.!!$F1 1185
3 TraesCS6D01G319100 chr6B 643131175 643133069 1894 False 611.0 1727 90.228 739 2719 4 chr6B.!!$F2 1980
4 TraesCS6D01G319100 chr3D 612263743 612264494 751 False 830.0 830 86.991 1009 1749 1 chr3D.!!$F3 740
5 TraesCS6D01G319100 chr3B 826918900 826919651 751 True 830.0 830 86.991 1009 1749 1 chr3B.!!$R1 740
6 TraesCS6D01G319100 chr3A 746900718 746901469 751 False 813.0 813 86.597 1009 1749 1 chr3A.!!$F2 740
7 TraesCS6D01G319100 chr1D 406676488 406677000 512 True 313.0 313 78.035 1031 1540 1 chr1D.!!$R1 509
8 TraesCS6D01G319100 chr1B 546967298 546967819 521 True 311.0 311 77.925 1031 1547 1 chr1B.!!$R2 516
9 TraesCS6D01G319100 chr1B 547177903 547178415 512 True 291.0 291 77.438 1031 1540 1 chr1B.!!$R3 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 329 0.03601 CATGACCCACCTCGCTCTTT 60.036 55.0 0.0 0.0 0.0 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2069 4001 0.030501 TGAGACCGGGGGTAATCCAT 60.031 55.0 6.32 0.0 35.25 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 9.823647 TTCAATATTGATCTTGTTCTAGAGGTC 57.176 33.333 18.61 0.00 37.00 3.85
65 66 9.206690 TCAATATTGATCTTGTTCTAGAGGTCT 57.793 33.333 14.23 0.00 31.01 3.85
66 67 9.829507 CAATATTGATCTTGTTCTAGAGGTCTT 57.170 33.333 10.04 0.00 0.00 3.01
67 68 9.829507 AATATTGATCTTGTTCTAGAGGTCTTG 57.170 33.333 0.00 0.00 0.00 3.02
68 69 5.667539 TGATCTTGTTCTAGAGGTCTTGG 57.332 43.478 0.00 0.00 0.00 3.61
69 70 3.963428 TCTTGTTCTAGAGGTCTTGGC 57.037 47.619 0.00 0.00 0.00 4.52
70 71 2.231478 TCTTGTTCTAGAGGTCTTGGCG 59.769 50.000 0.00 0.00 0.00 5.69
71 72 1.919240 TGTTCTAGAGGTCTTGGCGA 58.081 50.000 0.00 0.00 0.00 5.54
72 73 1.544691 TGTTCTAGAGGTCTTGGCGAC 59.455 52.381 0.00 0.00 42.07 5.19
73 74 1.544691 GTTCTAGAGGTCTTGGCGACA 59.455 52.381 0.00 0.00 44.68 4.35
74 75 1.464734 TCTAGAGGTCTTGGCGACAG 58.535 55.000 0.00 0.00 44.68 3.51
75 76 0.457851 CTAGAGGTCTTGGCGACAGG 59.542 60.000 0.00 0.00 44.68 4.00
76 77 0.039180 TAGAGGTCTTGGCGACAGGA 59.961 55.000 0.00 0.00 45.18 3.86
81 82 2.436521 TCTTGGCGACAGGAGTTCA 58.563 52.632 0.00 0.00 42.14 3.18
82 83 0.756294 TCTTGGCGACAGGAGTTCAA 59.244 50.000 0.00 0.00 42.14 2.69
83 84 1.140052 TCTTGGCGACAGGAGTTCAAA 59.860 47.619 0.00 0.00 42.14 2.69
84 85 2.154462 CTTGGCGACAGGAGTTCAAAT 58.846 47.619 0.00 0.00 44.54 2.32
85 86 3.007506 TCTTGGCGACAGGAGTTCAAATA 59.992 43.478 0.00 0.00 42.14 1.40
86 87 3.627395 TGGCGACAGGAGTTCAAATAT 57.373 42.857 0.00 0.00 35.01 1.28
87 88 4.746535 TGGCGACAGGAGTTCAAATATA 57.253 40.909 0.00 0.00 35.01 0.86
88 89 5.290493 TGGCGACAGGAGTTCAAATATAT 57.710 39.130 0.00 0.00 35.01 0.86
89 90 6.413783 TGGCGACAGGAGTTCAAATATATA 57.586 37.500 0.00 0.00 35.01 0.86
90 91 6.822442 TGGCGACAGGAGTTCAAATATATAA 58.178 36.000 0.00 0.00 35.01 0.98
91 92 7.276658 TGGCGACAGGAGTTCAAATATATAAA 58.723 34.615 0.00 0.00 35.01 1.40
92 93 7.771361 TGGCGACAGGAGTTCAAATATATAAAA 59.229 33.333 0.00 0.00 35.01 1.52
93 94 8.784043 GGCGACAGGAGTTCAAATATATAAAAT 58.216 33.333 0.00 0.00 0.00 1.82
94 95 9.599322 GCGACAGGAGTTCAAATATATAAAATG 57.401 33.333 0.00 0.00 0.00 2.32
143 144 9.537192 TCAAAGATATGAATGAATGAAATTGCC 57.463 29.630 0.00 0.00 36.07 4.52
144 145 9.320352 CAAAGATATGAATGAATGAAATTGCCA 57.680 29.630 0.00 0.00 36.07 4.92
145 146 9.893634 AAAGATATGAATGAATGAAATTGCCAA 57.106 25.926 0.00 0.00 36.07 4.52
146 147 9.893634 AAGATATGAATGAATGAAATTGCCAAA 57.106 25.926 0.00 0.00 36.07 3.28
147 148 9.542462 AGATATGAATGAATGAAATTGCCAAAG 57.458 29.630 0.00 0.00 36.07 2.77
148 149 9.537192 GATATGAATGAATGAAATTGCCAAAGA 57.463 29.630 0.00 0.00 36.07 2.52
149 150 9.893634 ATATGAATGAATGAAATTGCCAAAGAA 57.106 25.926 0.00 0.00 36.07 2.52
150 151 8.624367 ATGAATGAATGAAATTGCCAAAGAAA 57.376 26.923 0.00 0.00 36.07 2.52
151 152 8.447924 TGAATGAATGAAATTGCCAAAGAAAA 57.552 26.923 0.00 0.00 36.07 2.29
152 153 8.561212 TGAATGAATGAAATTGCCAAAGAAAAG 58.439 29.630 0.00 0.00 36.07 2.27
153 154 8.680039 AATGAATGAAATTGCCAAAGAAAAGA 57.320 26.923 0.00 0.00 36.07 2.52
154 155 8.680039 ATGAATGAAATTGCCAAAGAAAAGAA 57.320 26.923 0.00 0.00 36.07 2.52
155 156 8.503458 TGAATGAAATTGCCAAAGAAAAGAAA 57.497 26.923 0.00 0.00 36.07 2.52
156 157 8.614346 TGAATGAAATTGCCAAAGAAAAGAAAG 58.386 29.630 0.00 0.00 36.07 2.62
157 158 6.923928 TGAAATTGCCAAAGAAAAGAAAGG 57.076 33.333 0.00 0.00 0.00 3.11
158 159 5.296531 TGAAATTGCCAAAGAAAAGAAAGGC 59.703 36.000 0.00 0.00 42.32 4.35
160 161 3.457610 TGCCAAAGAAAAGAAAGGCAG 57.542 42.857 0.00 0.00 46.25 4.85
161 162 2.102925 TGCCAAAGAAAAGAAAGGCAGG 59.897 45.455 0.00 0.00 46.25 4.85
162 163 2.365293 GCCAAAGAAAAGAAAGGCAGGA 59.635 45.455 0.00 0.00 41.63 3.86
163 164 3.007290 GCCAAAGAAAAGAAAGGCAGGAT 59.993 43.478 0.00 0.00 41.63 3.24
164 165 4.503817 GCCAAAGAAAAGAAAGGCAGGATT 60.504 41.667 0.00 0.00 41.63 3.01
165 166 5.614308 CCAAAGAAAAGAAAGGCAGGATTT 58.386 37.500 0.00 0.00 0.00 2.17
166 167 6.741240 GCCAAAGAAAAGAAAGGCAGGATTTA 60.741 38.462 0.00 0.00 41.63 1.40
167 168 7.216494 CCAAAGAAAAGAAAGGCAGGATTTAA 58.784 34.615 0.00 0.00 0.00 1.52
168 169 7.879677 CCAAAGAAAAGAAAGGCAGGATTTAAT 59.120 33.333 0.00 0.00 0.00 1.40
169 170 8.929746 CAAAGAAAAGAAAGGCAGGATTTAATC 58.070 33.333 0.00 0.00 0.00 1.75
170 171 8.427902 AAGAAAAGAAAGGCAGGATTTAATCT 57.572 30.769 4.87 0.00 0.00 2.40
171 172 8.060931 AGAAAAGAAAGGCAGGATTTAATCTC 57.939 34.615 4.87 0.00 0.00 2.75
172 173 6.442513 AAAGAAAGGCAGGATTTAATCTCG 57.557 37.500 4.87 0.00 0.00 4.04
173 174 3.879892 AGAAAGGCAGGATTTAATCTCGC 59.120 43.478 4.87 7.57 0.00 5.03
174 175 3.281727 AAGGCAGGATTTAATCTCGCA 57.718 42.857 16.41 0.00 0.00 5.10
175 176 3.498774 AGGCAGGATTTAATCTCGCAT 57.501 42.857 16.41 9.74 0.00 4.73
176 177 3.144506 AGGCAGGATTTAATCTCGCATG 58.855 45.455 16.41 0.00 0.00 4.06
177 178 2.351157 GGCAGGATTTAATCTCGCATGC 60.351 50.000 7.91 7.91 0.00 4.06
178 179 2.663879 GCAGGATTTAATCTCGCATGCG 60.664 50.000 33.61 33.61 41.35 4.73
179 180 2.545526 CAGGATTTAATCTCGCATGCGT 59.454 45.455 36.50 21.75 40.74 5.24
180 181 3.740832 CAGGATTTAATCTCGCATGCGTA 59.259 43.478 36.50 26.49 40.74 4.42
181 182 4.389992 CAGGATTTAATCTCGCATGCGTAT 59.610 41.667 36.50 27.40 40.74 3.06
182 183 4.389992 AGGATTTAATCTCGCATGCGTATG 59.610 41.667 36.50 26.46 40.74 2.39
195 196 1.651987 GCGTATGCACCTTTAGAGCA 58.348 50.000 0.89 0.00 43.14 4.26
199 200 2.814805 ATGCACCTTTAGAGCATGGT 57.185 45.000 0.00 0.00 46.34 3.55
200 201 2.584835 TGCACCTTTAGAGCATGGTT 57.415 45.000 0.00 0.00 32.55 3.67
201 202 3.712016 TGCACCTTTAGAGCATGGTTA 57.288 42.857 0.00 0.00 32.55 2.85
202 203 4.027674 TGCACCTTTAGAGCATGGTTAA 57.972 40.909 0.00 0.00 32.55 2.01
203 204 4.599041 TGCACCTTTAGAGCATGGTTAAT 58.401 39.130 0.00 0.00 32.55 1.40
204 205 5.750524 TGCACCTTTAGAGCATGGTTAATA 58.249 37.500 0.00 0.00 32.55 0.98
205 206 6.184068 TGCACCTTTAGAGCATGGTTAATAA 58.816 36.000 0.00 0.00 32.55 1.40
206 207 6.833416 TGCACCTTTAGAGCATGGTTAATAAT 59.167 34.615 0.00 0.00 32.55 1.28
207 208 7.996066 TGCACCTTTAGAGCATGGTTAATAATA 59.004 33.333 0.00 0.00 32.55 0.98
208 209 9.014297 GCACCTTTAGAGCATGGTTAATAATAT 57.986 33.333 0.00 0.00 0.00 1.28
213 214 8.942338 TTAGAGCATGGTTAATAATATAGCCG 57.058 34.615 0.00 0.00 0.00 5.52
214 215 6.349300 AGAGCATGGTTAATAATATAGCCGG 58.651 40.000 0.00 0.00 0.00 6.13
215 216 4.881850 AGCATGGTTAATAATATAGCCGGC 59.118 41.667 21.89 21.89 32.78 6.13
216 217 4.881850 GCATGGTTAATAATATAGCCGGCT 59.118 41.667 34.85 34.85 31.18 5.52
217 218 5.220854 GCATGGTTAATAATATAGCCGGCTG 60.221 44.000 38.98 17.55 31.18 4.85
218 219 4.258543 TGGTTAATAATATAGCCGGCTGC 58.741 43.478 38.98 6.62 41.71 5.25
228 229 4.291047 CCGGCTGCTGGCTATATG 57.709 61.111 15.72 0.00 41.46 1.78
229 230 1.673477 CCGGCTGCTGGCTATATGA 59.327 57.895 15.72 0.00 41.46 2.15
230 231 0.251354 CCGGCTGCTGGCTATATGAT 59.749 55.000 15.72 0.00 41.46 2.45
231 232 1.366679 CGGCTGCTGGCTATATGATG 58.633 55.000 15.09 0.00 41.46 3.07
232 233 1.338484 CGGCTGCTGGCTATATGATGT 60.338 52.381 15.09 0.00 41.46 3.06
233 234 2.787994 GGCTGCTGGCTATATGATGTT 58.212 47.619 10.05 0.00 41.46 2.71
234 235 2.486982 GGCTGCTGGCTATATGATGTTG 59.513 50.000 10.05 0.00 41.46 3.33
235 236 2.095364 GCTGCTGGCTATATGATGTTGC 60.095 50.000 0.00 0.00 38.06 4.17
236 237 2.486982 CTGCTGGCTATATGATGTTGCC 59.513 50.000 7.62 7.62 43.49 4.52
240 241 2.494059 GGCTATATGATGTTGCCACGT 58.506 47.619 9.49 0.00 42.79 4.49
241 242 2.480419 GGCTATATGATGTTGCCACGTC 59.520 50.000 9.49 3.20 42.79 4.34
244 245 4.865865 TGATGTTGCCACGTCACA 57.134 50.000 8.69 0.00 42.94 3.58
245 246 3.320823 TGATGTTGCCACGTCACAT 57.679 47.368 8.69 0.00 42.94 3.21
246 247 2.464157 TGATGTTGCCACGTCACATA 57.536 45.000 8.69 0.00 42.94 2.29
247 248 2.984562 TGATGTTGCCACGTCACATAT 58.015 42.857 8.69 0.00 42.94 1.78
248 249 4.130286 TGATGTTGCCACGTCACATATA 57.870 40.909 8.69 0.00 42.94 0.86
249 250 4.119136 TGATGTTGCCACGTCACATATAG 58.881 43.478 8.69 0.00 42.94 1.31
250 251 2.276201 TGTTGCCACGTCACATATAGC 58.724 47.619 0.00 0.00 0.00 2.97
251 252 2.093711 TGTTGCCACGTCACATATAGCT 60.094 45.455 0.00 0.00 0.00 3.32
252 253 3.131400 TGTTGCCACGTCACATATAGCTA 59.869 43.478 0.00 0.00 0.00 3.32
253 254 4.116961 GTTGCCACGTCACATATAGCTAA 58.883 43.478 0.00 0.00 0.00 3.09
254 255 3.977427 TGCCACGTCACATATAGCTAAG 58.023 45.455 0.00 0.00 0.00 2.18
255 256 2.731976 GCCACGTCACATATAGCTAAGC 59.268 50.000 0.00 0.00 0.00 3.09
256 257 3.553096 GCCACGTCACATATAGCTAAGCT 60.553 47.826 0.00 0.00 43.41 3.74
257 258 4.621991 CCACGTCACATATAGCTAAGCTT 58.378 43.478 3.48 3.48 40.44 3.74
258 259 5.769367 CCACGTCACATATAGCTAAGCTTA 58.231 41.667 5.94 5.94 40.44 3.09
259 260 6.390721 CCACGTCACATATAGCTAAGCTTAT 58.609 40.000 6.64 0.00 40.44 1.73
260 261 7.535997 CCACGTCACATATAGCTAAGCTTATA 58.464 38.462 6.64 0.00 40.44 0.98
261 262 7.698550 CCACGTCACATATAGCTAAGCTTATAG 59.301 40.741 6.64 0.00 40.44 1.31
262 263 7.219154 CACGTCACATATAGCTAAGCTTATAGC 59.781 40.741 12.47 12.47 46.94 2.97
267 268 3.606886 GCTAAGCTTATAGCCGGCA 57.393 52.632 31.54 15.56 43.77 5.69
268 269 1.878953 GCTAAGCTTATAGCCGGCAA 58.121 50.000 31.54 13.85 43.77 4.52
269 270 1.801178 GCTAAGCTTATAGCCGGCAAG 59.199 52.381 31.54 23.91 43.77 4.01
270 271 2.807108 GCTAAGCTTATAGCCGGCAAGT 60.807 50.000 31.54 16.37 43.77 3.16
271 272 3.554337 GCTAAGCTTATAGCCGGCAAGTA 60.554 47.826 31.54 13.42 43.77 2.24
272 273 2.528041 AGCTTATAGCCGGCAAGTAC 57.472 50.000 31.54 13.32 43.77 2.73
273 274 1.760613 AGCTTATAGCCGGCAAGTACA 59.239 47.619 31.54 6.25 43.77 2.90
274 275 2.169769 AGCTTATAGCCGGCAAGTACAA 59.830 45.455 31.54 7.00 43.77 2.41
275 276 3.139077 GCTTATAGCCGGCAAGTACAAT 58.861 45.455 31.54 7.63 34.48 2.71
276 277 4.039973 AGCTTATAGCCGGCAAGTACAATA 59.960 41.667 31.54 10.00 43.77 1.90
277 278 4.389077 GCTTATAGCCGGCAAGTACAATAG 59.611 45.833 31.54 13.20 34.48 1.73
278 279 2.234300 TAGCCGGCAAGTACAATAGC 57.766 50.000 31.54 0.00 0.00 2.97
279 280 0.541863 AGCCGGCAAGTACAATAGCT 59.458 50.000 31.54 0.00 0.00 3.32
280 281 0.657840 GCCGGCAAGTACAATAGCTG 59.342 55.000 24.80 0.00 0.00 4.24
281 282 1.742411 GCCGGCAAGTACAATAGCTGA 60.742 52.381 24.80 0.00 35.42 4.26
282 283 2.627945 CCGGCAAGTACAATAGCTGAA 58.372 47.619 0.00 0.00 35.42 3.02
283 284 3.206150 CCGGCAAGTACAATAGCTGAAT 58.794 45.455 0.00 0.00 35.42 2.57
284 285 4.377021 CCGGCAAGTACAATAGCTGAATA 58.623 43.478 0.00 0.00 35.42 1.75
285 286 4.997395 CCGGCAAGTACAATAGCTGAATAT 59.003 41.667 0.00 0.00 35.42 1.28
286 287 5.470098 CCGGCAAGTACAATAGCTGAATATT 59.530 40.000 0.00 0.00 35.42 1.28
287 288 6.649141 CCGGCAAGTACAATAGCTGAATATTA 59.351 38.462 0.00 0.00 35.42 0.98
288 289 7.172532 CCGGCAAGTACAATAGCTGAATATTAA 59.827 37.037 0.00 0.00 35.42 1.40
289 290 8.721478 CGGCAAGTACAATAGCTGAATATTAAT 58.279 33.333 0.00 0.00 35.42 1.40
315 316 7.718272 TGTACTACTTTGTTGTTACATGACC 57.282 36.000 0.00 0.00 33.44 4.02
316 317 6.707161 TGTACTACTTTGTTGTTACATGACCC 59.293 38.462 0.00 0.00 33.44 4.46
317 318 5.686753 ACTACTTTGTTGTTACATGACCCA 58.313 37.500 0.00 0.00 33.44 4.51
318 319 4.911514 ACTTTGTTGTTACATGACCCAC 57.088 40.909 0.00 0.00 33.44 4.61
319 320 3.634910 ACTTTGTTGTTACATGACCCACC 59.365 43.478 0.00 0.00 33.44 4.61
320 321 3.586470 TTGTTGTTACATGACCCACCT 57.414 42.857 0.00 0.00 33.44 4.00
321 322 3.134574 TGTTGTTACATGACCCACCTC 57.865 47.619 0.00 0.00 0.00 3.85
322 323 2.073816 GTTGTTACATGACCCACCTCG 58.926 52.381 0.00 0.00 0.00 4.63
323 324 0.036765 TGTTACATGACCCACCTCGC 60.037 55.000 0.00 0.00 0.00 5.03
324 325 0.249398 GTTACATGACCCACCTCGCT 59.751 55.000 0.00 0.00 0.00 4.93
325 326 0.535335 TTACATGACCCACCTCGCTC 59.465 55.000 0.00 0.00 0.00 5.03
326 327 0.324368 TACATGACCCACCTCGCTCT 60.324 55.000 0.00 0.00 0.00 4.09
327 328 1.194781 ACATGACCCACCTCGCTCTT 61.195 55.000 0.00 0.00 0.00 2.85
328 329 0.036010 CATGACCCACCTCGCTCTTT 60.036 55.000 0.00 0.00 0.00 2.52
329 330 0.250513 ATGACCCACCTCGCTCTTTC 59.749 55.000 0.00 0.00 0.00 2.62
330 331 1.118965 TGACCCACCTCGCTCTTTCA 61.119 55.000 0.00 0.00 0.00 2.69
331 332 0.670854 GACCCACCTCGCTCTTTCAC 60.671 60.000 0.00 0.00 0.00 3.18
332 333 1.371183 CCCACCTCGCTCTTTCACA 59.629 57.895 0.00 0.00 0.00 3.58
333 334 0.250295 CCCACCTCGCTCTTTCACAA 60.250 55.000 0.00 0.00 0.00 3.33
334 335 1.593196 CCACCTCGCTCTTTCACAAA 58.407 50.000 0.00 0.00 0.00 2.83
335 336 1.532868 CCACCTCGCTCTTTCACAAAG 59.467 52.381 0.00 0.00 39.88 2.77
336 337 2.213499 CACCTCGCTCTTTCACAAAGT 58.787 47.619 0.00 0.00 39.52 2.66
337 338 3.390135 CACCTCGCTCTTTCACAAAGTA 58.610 45.455 0.00 0.00 39.52 2.24
338 339 3.184581 CACCTCGCTCTTTCACAAAGTAC 59.815 47.826 0.00 0.00 39.52 2.73
339 340 2.737252 CCTCGCTCTTTCACAAAGTACC 59.263 50.000 0.00 0.00 39.52 3.34
340 341 3.555168 CCTCGCTCTTTCACAAAGTACCT 60.555 47.826 0.00 0.00 39.52 3.08
341 342 4.321750 CCTCGCTCTTTCACAAAGTACCTA 60.322 45.833 0.00 0.00 39.52 3.08
342 343 4.806330 TCGCTCTTTCACAAAGTACCTAG 58.194 43.478 0.00 0.00 39.52 3.02
343 344 3.927142 CGCTCTTTCACAAAGTACCTAGG 59.073 47.826 7.41 7.41 39.52 3.02
344 345 4.321750 CGCTCTTTCACAAAGTACCTAGGA 60.322 45.833 17.98 0.00 39.52 2.94
345 346 5.172205 GCTCTTTCACAAAGTACCTAGGAG 58.828 45.833 17.98 0.00 39.52 3.69
346 347 5.148651 TCTTTCACAAAGTACCTAGGAGC 57.851 43.478 17.98 7.53 39.52 4.70
347 348 4.591498 TCTTTCACAAAGTACCTAGGAGCA 59.409 41.667 17.98 0.00 39.52 4.26
348 349 5.248477 TCTTTCACAAAGTACCTAGGAGCAT 59.752 40.000 17.98 0.00 39.52 3.79
349 350 6.439375 TCTTTCACAAAGTACCTAGGAGCATA 59.561 38.462 17.98 0.00 39.52 3.14
350 351 6.808321 TTCACAAAGTACCTAGGAGCATAT 57.192 37.500 17.98 0.00 0.00 1.78
351 352 6.161855 TCACAAAGTACCTAGGAGCATATG 57.838 41.667 17.98 9.46 0.00 1.78
352 353 4.752101 CACAAAGTACCTAGGAGCATATGC 59.248 45.833 20.36 20.36 42.49 3.14
362 363 3.257933 GCATATGCTGTAGCCGGC 58.742 61.111 21.89 21.89 43.67 6.13
363 364 1.302033 GCATATGCTGTAGCCGGCT 60.302 57.895 34.85 34.85 43.76 5.52
364 365 1.572085 GCATATGCTGTAGCCGGCTG 61.572 60.000 38.98 23.36 43.76 4.85
365 366 0.250038 CATATGCTGTAGCCGGCTGT 60.250 55.000 38.98 17.24 43.76 4.40
366 367 0.469917 ATATGCTGTAGCCGGCTGTT 59.530 50.000 38.98 16.38 43.76 3.16
367 368 1.116308 TATGCTGTAGCCGGCTGTTA 58.884 50.000 38.98 22.31 43.76 2.41
368 369 0.251916 ATGCTGTAGCCGGCTGTTAA 59.748 50.000 38.98 16.96 43.76 2.01
369 370 0.672401 TGCTGTAGCCGGCTGTTAAC 60.672 55.000 38.98 27.95 43.76 2.01
370 371 0.391263 GCTGTAGCCGGCTGTTAACT 60.391 55.000 38.98 13.82 40.01 2.24
371 372 1.134907 GCTGTAGCCGGCTGTTAACTA 60.135 52.381 38.98 14.77 40.01 2.24
372 373 2.810650 CTGTAGCCGGCTGTTAACTAG 58.189 52.381 38.98 21.65 0.00 2.57
373 374 2.165845 CTGTAGCCGGCTGTTAACTAGT 59.834 50.000 38.98 11.29 0.00 2.57
374 375 3.355378 TGTAGCCGGCTGTTAACTAGTA 58.645 45.455 38.98 12.17 0.00 1.82
375 376 3.379372 TGTAGCCGGCTGTTAACTAGTAG 59.621 47.826 38.98 0.00 0.00 2.57
376 377 2.731572 AGCCGGCTGTTAACTAGTAGA 58.268 47.619 32.33 0.00 0.00 2.59
377 378 2.426381 AGCCGGCTGTTAACTAGTAGAC 59.574 50.000 32.33 0.00 0.00 2.59
378 379 2.480932 GCCGGCTGTTAACTAGTAGACC 60.481 54.545 22.15 1.57 0.00 3.85
379 380 2.223433 CCGGCTGTTAACTAGTAGACCG 60.223 54.545 7.22 14.29 37.88 4.79
380 381 2.793933 CGGCTGTTAACTAGTAGACCGC 60.794 54.545 7.22 13.20 0.00 5.68
381 382 2.426381 GGCTGTTAACTAGTAGACCGCT 59.574 50.000 17.96 0.00 0.00 5.52
382 383 3.119209 GGCTGTTAACTAGTAGACCGCTT 60.119 47.826 17.96 0.00 0.00 4.68
383 384 4.104066 GCTGTTAACTAGTAGACCGCTTC 58.896 47.826 7.22 0.00 0.00 3.86
384 385 4.142425 GCTGTTAACTAGTAGACCGCTTCT 60.142 45.833 7.22 0.00 38.51 2.85
385 386 5.557891 TGTTAACTAGTAGACCGCTTCTC 57.442 43.478 7.22 0.00 35.55 2.87
386 387 5.251764 TGTTAACTAGTAGACCGCTTCTCT 58.748 41.667 7.22 0.00 35.55 3.10
387 388 5.709164 TGTTAACTAGTAGACCGCTTCTCTT 59.291 40.000 7.22 0.00 35.55 2.85
388 389 4.968812 AACTAGTAGACCGCTTCTCTTC 57.031 45.455 3.59 0.00 35.55 2.87
389 390 4.224991 ACTAGTAGACCGCTTCTCTTCT 57.775 45.455 3.59 0.00 35.55 2.85
390 391 4.193865 ACTAGTAGACCGCTTCTCTTCTC 58.806 47.826 3.59 0.00 35.55 2.87
391 392 3.359695 AGTAGACCGCTTCTCTTCTCT 57.640 47.619 0.00 0.00 35.55 3.10
392 393 3.275999 AGTAGACCGCTTCTCTTCTCTC 58.724 50.000 0.00 0.00 35.55 3.20
393 394 2.507407 AGACCGCTTCTCTTCTCTCT 57.493 50.000 0.00 0.00 0.00 3.10
394 395 2.365582 AGACCGCTTCTCTTCTCTCTC 58.634 52.381 0.00 0.00 0.00 3.20
395 396 1.404035 GACCGCTTCTCTTCTCTCTCC 59.596 57.143 0.00 0.00 0.00 3.71
396 397 1.005450 ACCGCTTCTCTTCTCTCTCCT 59.995 52.381 0.00 0.00 0.00 3.69
397 398 2.099405 CCGCTTCTCTTCTCTCTCCTT 58.901 52.381 0.00 0.00 0.00 3.36
398 399 2.495669 CCGCTTCTCTTCTCTCTCCTTT 59.504 50.000 0.00 0.00 0.00 3.11
399 400 3.056179 CCGCTTCTCTTCTCTCTCCTTTT 60.056 47.826 0.00 0.00 0.00 2.27
400 401 4.562552 CCGCTTCTCTTCTCTCTCCTTTTT 60.563 45.833 0.00 0.00 0.00 1.94
421 422 7.639113 TTTTTCTCTCTTCCAACTAAGCAAA 57.361 32.000 0.00 0.00 0.00 3.68
422 423 7.639113 TTTTCTCTCTTCCAACTAAGCAAAA 57.361 32.000 0.00 0.00 0.00 2.44
423 424 7.639113 TTTCTCTCTTCCAACTAAGCAAAAA 57.361 32.000 0.00 0.00 0.00 1.94
424 425 7.823745 TTCTCTCTTCCAACTAAGCAAAAAT 57.176 32.000 0.00 0.00 0.00 1.82
425 426 8.918202 TTCTCTCTTCCAACTAAGCAAAAATA 57.082 30.769 0.00 0.00 0.00 1.40
426 427 9.520515 TTCTCTCTTCCAACTAAGCAAAAATAT 57.479 29.630 0.00 0.00 0.00 1.28
450 451 5.941948 ATATTTAATGTCTTACAGCCCGC 57.058 39.130 0.00 0.00 0.00 6.13
451 452 2.032680 TTAATGTCTTACAGCCCGCC 57.967 50.000 0.00 0.00 0.00 6.13
452 453 1.200519 TAATGTCTTACAGCCCGCCT 58.799 50.000 0.00 0.00 0.00 5.52
453 454 1.200519 AATGTCTTACAGCCCGCCTA 58.799 50.000 0.00 0.00 0.00 3.93
454 455 0.464452 ATGTCTTACAGCCCGCCTAC 59.536 55.000 0.00 0.00 0.00 3.18
455 456 0.901114 TGTCTTACAGCCCGCCTACA 60.901 55.000 0.00 0.00 0.00 2.74
456 457 0.464452 GTCTTACAGCCCGCCTACAT 59.536 55.000 0.00 0.00 0.00 2.29
457 458 0.750850 TCTTACAGCCCGCCTACATC 59.249 55.000 0.00 0.00 0.00 3.06
458 459 0.464036 CTTACAGCCCGCCTACATCA 59.536 55.000 0.00 0.00 0.00 3.07
459 460 0.177141 TTACAGCCCGCCTACATCAC 59.823 55.000 0.00 0.00 0.00 3.06
460 461 1.682451 TACAGCCCGCCTACATCACC 61.682 60.000 0.00 0.00 0.00 4.02
461 462 2.365635 AGCCCGCCTACATCACCT 60.366 61.111 0.00 0.00 0.00 4.00
462 463 1.995626 AGCCCGCCTACATCACCTT 60.996 57.895 0.00 0.00 0.00 3.50
463 464 0.689745 AGCCCGCCTACATCACCTTA 60.690 55.000 0.00 0.00 0.00 2.69
464 465 0.396811 GCCCGCCTACATCACCTTAT 59.603 55.000 0.00 0.00 0.00 1.73
465 466 1.202770 GCCCGCCTACATCACCTTATT 60.203 52.381 0.00 0.00 0.00 1.40
466 467 2.494059 CCCGCCTACATCACCTTATTG 58.506 52.381 0.00 0.00 0.00 1.90
467 468 2.158813 CCCGCCTACATCACCTTATTGT 60.159 50.000 0.00 0.00 0.00 2.71
468 469 3.070446 CCCGCCTACATCACCTTATTGTA 59.930 47.826 0.00 0.00 0.00 2.41
469 470 4.056050 CCGCCTACATCACCTTATTGTAC 58.944 47.826 0.00 0.00 0.00 2.90
470 471 4.202223 CCGCCTACATCACCTTATTGTACT 60.202 45.833 0.00 0.00 0.00 2.73
471 472 5.357257 CGCCTACATCACCTTATTGTACTT 58.643 41.667 0.00 0.00 0.00 2.24
472 473 5.234329 CGCCTACATCACCTTATTGTACTTG 59.766 44.000 0.00 0.00 0.00 3.16
473 474 5.007724 GCCTACATCACCTTATTGTACTTGC 59.992 44.000 0.00 0.00 0.00 4.01
474 475 6.349300 CCTACATCACCTTATTGTACTTGCT 58.651 40.000 0.00 0.00 0.00 3.91
475 476 6.480320 CCTACATCACCTTATTGTACTTGCTC 59.520 42.308 0.00 0.00 0.00 4.26
476 477 6.054860 ACATCACCTTATTGTACTTGCTCT 57.945 37.500 0.00 0.00 0.00 4.09
477 478 6.476378 ACATCACCTTATTGTACTTGCTCTT 58.524 36.000 0.00 0.00 0.00 2.85
478 479 7.620880 ACATCACCTTATTGTACTTGCTCTTA 58.379 34.615 0.00 0.00 0.00 2.10
479 480 7.549488 ACATCACCTTATTGTACTTGCTCTTAC 59.451 37.037 0.00 0.00 0.00 2.34
480 481 6.097356 TCACCTTATTGTACTTGCTCTTACG 58.903 40.000 0.00 0.00 0.00 3.18
481 482 5.867716 CACCTTATTGTACTTGCTCTTACGT 59.132 40.000 0.00 0.00 0.00 3.57
482 483 5.867716 ACCTTATTGTACTTGCTCTTACGTG 59.132 40.000 0.00 0.00 0.00 4.49
483 484 6.097356 CCTTATTGTACTTGCTCTTACGTGA 58.903 40.000 0.00 0.00 0.00 4.35
484 485 6.588756 CCTTATTGTACTTGCTCTTACGTGAA 59.411 38.462 0.00 0.00 0.00 3.18
485 486 5.840940 ATTGTACTTGCTCTTACGTGAAC 57.159 39.130 0.00 0.00 0.00 3.18
497 498 2.973419 ACGTGAACGAGAAGAGAGAC 57.027 50.000 10.26 0.00 43.02 3.36
500 501 2.413502 CGTGAACGAGAAGAGAGACTGG 60.414 54.545 0.00 0.00 43.02 4.00
503 504 4.082463 GTGAACGAGAAGAGAGACTGGATT 60.082 45.833 0.00 0.00 0.00 3.01
531 532 7.805071 GGCATGCATCAAGTAATACTTTATCAC 59.195 37.037 21.36 0.00 36.03 3.06
543 546 2.037251 ACTTTATCACTGACACGCCTGT 59.963 45.455 0.00 0.00 0.00 4.00
556 559 1.284657 CGCCTGTCATCTGATGTGAC 58.715 55.000 16.66 10.48 44.77 3.67
569 572 9.835389 TCATCTGATGTGACACAATATTGAATA 57.165 29.630 22.16 3.76 0.00 1.75
576 579 8.688747 TGTGACACAATATTGAATATGCCATA 57.311 30.769 22.16 4.23 0.00 2.74
577 580 8.567104 TGTGACACAATATTGAATATGCCATAC 58.433 33.333 22.16 7.57 0.00 2.39
585 588 9.812347 AATATTGAATATGCCATACTCTTTGGA 57.188 29.630 0.00 0.00 36.26 3.53
602 605 9.760077 ACTCTTTGGAAATACACTAATATACGG 57.240 33.333 0.00 0.00 0.00 4.02
603 606 9.204570 CTCTTTGGAAATACACTAATATACGGG 57.795 37.037 0.00 0.00 0.00 5.28
631 635 1.865788 GCCAGCAAAGCACCGAATCA 61.866 55.000 0.00 0.00 0.00 2.57
646 650 2.409752 CGAATCACAAAGTGGACGAACG 60.410 50.000 0.00 0.00 33.87 3.95
650 654 1.005347 CACAAAGTGGACGAACGACAC 60.005 52.381 14.55 14.55 35.43 3.67
679 693 1.401018 CCGGTAAAAAGAGCTTTGCGG 60.401 52.381 0.00 0.00 32.36 5.69
688 702 2.238521 AGAGCTTTGCGGAATCCAAAA 58.761 42.857 0.00 0.00 32.37 2.44
691 705 1.939381 GCTTTGCGGAATCCAAAACCC 60.939 52.381 0.00 0.00 32.37 4.11
693 707 1.710816 TTGCGGAATCCAAAACCCTT 58.289 45.000 0.00 0.00 0.00 3.95
695 709 0.246360 GCGGAATCCAAAACCCTTGG 59.754 55.000 0.00 0.00 40.87 3.61
696 710 1.627864 CGGAATCCAAAACCCTTGGT 58.372 50.000 0.00 0.00 40.40 3.67
720 734 6.019656 TGCCCACCCAGATTTACATAATAA 57.980 37.500 0.00 0.00 0.00 1.40
876 2706 9.670442 ACTCCTAGGGAATCTATTTATGTACAA 57.330 33.333 9.46 0.00 0.00 2.41
903 2733 2.314647 GCCAACTAAGCACACGCGA 61.315 57.895 15.93 0.00 45.49 5.87
952 2789 0.468226 AGCCGTGGAGAAACAACAGA 59.532 50.000 0.00 0.00 0.00 3.41
991 2860 3.378742 ACACTCTGTGAGCGAGGTATTAG 59.621 47.826 4.61 0.00 36.96 1.73
992 2861 3.628032 CACTCTGTGAGCGAGGTATTAGA 59.372 47.826 0.00 0.00 35.23 2.10
993 2862 4.277174 CACTCTGTGAGCGAGGTATTAGAT 59.723 45.833 0.00 0.00 35.23 1.98
994 2863 4.517453 ACTCTGTGAGCGAGGTATTAGATC 59.483 45.833 0.00 0.00 32.04 2.75
1642 3550 0.321671 TGGCTTTGAGTTCGCTAGCT 59.678 50.000 13.93 0.00 32.58 3.32
1643 3551 0.723981 GGCTTTGAGTTCGCTAGCTG 59.276 55.000 13.93 6.69 32.58 4.24
1747 3664 1.685224 GAGATGGTGCAACAGGGGA 59.315 57.895 11.62 0.00 39.98 4.81
1780 3701 1.123928 CGGCTTCCCCTACTGAGAAT 58.876 55.000 0.00 0.00 0.00 2.40
1783 3707 3.134081 CGGCTTCCCCTACTGAGAATAAA 59.866 47.826 0.00 0.00 0.00 1.40
1810 3738 0.675837 CCACACCGAGTCCGAGAGTA 60.676 60.000 0.00 0.00 38.22 2.59
1817 3745 2.619177 CCGAGTCCGAGAGTACATCATT 59.381 50.000 0.00 0.00 38.22 2.57
1970 3902 8.664669 AAATAAATAAAATGTCCACTCTGGGT 57.335 30.769 0.00 0.00 38.32 4.51
1971 3903 7.881775 ATAAATAAAATGTCCACTCTGGGTC 57.118 36.000 0.00 0.00 38.32 4.46
1972 3904 4.927267 ATAAAATGTCCACTCTGGGTCA 57.073 40.909 0.00 0.00 38.32 4.02
1973 3905 2.867109 AAATGTCCACTCTGGGTCAG 57.133 50.000 0.00 0.00 38.32 3.51
1974 3906 2.030027 AATGTCCACTCTGGGTCAGA 57.970 50.000 0.00 0.00 38.32 3.27
1975 3907 2.030027 ATGTCCACTCTGGGTCAGAA 57.970 50.000 0.00 0.00 40.18 3.02
1976 3908 1.342074 TGTCCACTCTGGGTCAGAAG 58.658 55.000 0.00 0.00 40.18 2.85
1977 3909 1.343069 GTCCACTCTGGGTCAGAAGT 58.657 55.000 0.00 0.00 40.18 3.01
1978 3910 1.694696 GTCCACTCTGGGTCAGAAGTT 59.305 52.381 0.00 0.00 40.18 2.66
1979 3911 1.971357 TCCACTCTGGGTCAGAAGTTC 59.029 52.381 0.00 0.00 40.18 3.01
1980 3912 1.694150 CCACTCTGGGTCAGAAGTTCA 59.306 52.381 5.50 0.00 40.18 3.18
1981 3913 2.304180 CCACTCTGGGTCAGAAGTTCAT 59.696 50.000 5.50 0.00 40.18 2.57
1982 3914 3.244700 CCACTCTGGGTCAGAAGTTCATT 60.245 47.826 5.50 0.00 40.18 2.57
1983 3915 4.392940 CACTCTGGGTCAGAAGTTCATTT 58.607 43.478 5.50 0.00 40.18 2.32
1984 3916 5.513094 CCACTCTGGGTCAGAAGTTCATTTA 60.513 44.000 5.50 0.00 40.18 1.40
1985 3917 5.409826 CACTCTGGGTCAGAAGTTCATTTAC 59.590 44.000 5.50 0.00 40.18 2.01
1986 3918 4.906618 TCTGGGTCAGAAGTTCATTTACC 58.093 43.478 5.50 6.53 37.57 2.85
1987 3919 4.010349 CTGGGTCAGAAGTTCATTTACCC 58.990 47.826 20.04 20.04 44.43 3.69
1988 3920 3.655777 TGGGTCAGAAGTTCATTTACCCT 59.344 43.478 23.99 0.00 44.47 4.34
1989 3921 4.847512 TGGGTCAGAAGTTCATTTACCCTA 59.152 41.667 23.99 14.25 44.47 3.53
1990 3922 5.311121 TGGGTCAGAAGTTCATTTACCCTAA 59.689 40.000 23.99 11.10 44.47 2.69
1991 3923 6.183361 TGGGTCAGAAGTTCATTTACCCTAAA 60.183 38.462 23.99 10.62 44.47 1.85
1992 3924 6.717997 GGGTCAGAAGTTCATTTACCCTAAAA 59.282 38.462 19.77 0.00 41.57 1.52
1993 3925 7.231925 GGGTCAGAAGTTCATTTACCCTAAAAA 59.768 37.037 19.77 0.00 41.57 1.94
1994 3926 8.803235 GGTCAGAAGTTCATTTACCCTAAAAAT 58.197 33.333 5.50 0.00 0.00 1.82
2003 3935 9.699703 TTCATTTACCCTAAAAATTTGTAGTGC 57.300 29.630 13.28 0.00 0.00 4.40
2004 3936 8.024285 TCATTTACCCTAAAAATTTGTAGTGCG 58.976 33.333 13.28 4.37 0.00 5.34
2005 3937 6.880942 TTACCCTAAAAATTTGTAGTGCGT 57.119 33.333 13.28 9.06 0.00 5.24
2006 3938 5.116069 ACCCTAAAAATTTGTAGTGCGTG 57.884 39.130 13.28 0.00 0.00 5.34
2007 3939 4.581409 ACCCTAAAAATTTGTAGTGCGTGT 59.419 37.500 13.28 1.78 0.00 4.49
2008 3940 5.068067 ACCCTAAAAATTTGTAGTGCGTGTT 59.932 36.000 13.28 0.00 0.00 3.32
2009 3941 5.980715 CCCTAAAAATTTGTAGTGCGTGTTT 59.019 36.000 13.28 0.00 0.00 2.83
2010 3942 6.477360 CCCTAAAAATTTGTAGTGCGTGTTTT 59.523 34.615 13.28 0.00 0.00 2.43
2011 3943 7.306341 CCCTAAAAATTTGTAGTGCGTGTTTTC 60.306 37.037 13.28 0.00 0.00 2.29
2012 3944 6.952935 AAAAATTTGTAGTGCGTGTTTTCA 57.047 29.167 0.00 0.00 0.00 2.69
2013 3945 6.952935 AAAATTTGTAGTGCGTGTTTTCAA 57.047 29.167 0.00 0.00 0.00 2.69
2014 3946 6.952935 AAATTTGTAGTGCGTGTTTTCAAA 57.047 29.167 0.00 0.00 0.00 2.69
2015 3947 6.567769 AATTTGTAGTGCGTGTTTTCAAAG 57.432 33.333 0.00 0.00 0.00 2.77
2016 3948 3.059634 TGTAGTGCGTGTTTTCAAAGC 57.940 42.857 0.00 0.00 36.65 3.51
2017 3949 2.680841 TGTAGTGCGTGTTTTCAAAGCT 59.319 40.909 0.00 0.00 36.91 3.74
2018 3950 2.475200 AGTGCGTGTTTTCAAAGCTC 57.525 45.000 0.00 0.00 36.91 4.09
2019 3951 1.742831 AGTGCGTGTTTTCAAAGCTCA 59.257 42.857 0.00 0.00 36.91 4.26
2020 3952 1.846175 GTGCGTGTTTTCAAAGCTCAC 59.154 47.619 0.00 0.00 36.91 3.51
2021 3953 1.470494 TGCGTGTTTTCAAAGCTCACA 59.530 42.857 0.00 0.00 36.91 3.58
2022 3954 2.095008 TGCGTGTTTTCAAAGCTCACAA 60.095 40.909 0.00 0.00 36.91 3.33
2023 3955 2.920490 GCGTGTTTTCAAAGCTCACAAA 59.080 40.909 0.00 0.00 34.47 2.83
2024 3956 3.551485 GCGTGTTTTCAAAGCTCACAAAT 59.449 39.130 0.00 0.00 34.47 2.32
2025 3957 4.737765 GCGTGTTTTCAAAGCTCACAAATA 59.262 37.500 0.00 0.00 34.47 1.40
2026 3958 5.231147 GCGTGTTTTCAAAGCTCACAAATAA 59.769 36.000 0.00 0.00 34.47 1.40
2027 3959 6.237701 GCGTGTTTTCAAAGCTCACAAATAAA 60.238 34.615 0.00 0.00 34.47 1.40
2028 3960 7.516627 GCGTGTTTTCAAAGCTCACAAATAAAT 60.517 33.333 0.00 0.00 34.47 1.40
2029 3961 8.327429 CGTGTTTTCAAAGCTCACAAATAAATT 58.673 29.630 0.00 0.00 0.00 1.82
2030 3962 9.986833 GTGTTTTCAAAGCTCACAAATAAATTT 57.013 25.926 0.00 0.00 0.00 1.82
2056 3988 6.418057 TTTTTGAGGGAGCATGTGTATTTT 57.582 33.333 0.00 0.00 0.00 1.82
2057 3989 6.418057 TTTTGAGGGAGCATGTGTATTTTT 57.582 33.333 0.00 0.00 0.00 1.94
2058 3990 7.531857 TTTTGAGGGAGCATGTGTATTTTTA 57.468 32.000 0.00 0.00 0.00 1.52
2059 3991 7.716799 TTTGAGGGAGCATGTGTATTTTTAT 57.283 32.000 0.00 0.00 0.00 1.40
2060 3992 7.716799 TTGAGGGAGCATGTGTATTTTTATT 57.283 32.000 0.00 0.00 0.00 1.40
2061 3993 7.716799 TGAGGGAGCATGTGTATTTTTATTT 57.283 32.000 0.00 0.00 0.00 1.40
2062 3994 8.815565 TGAGGGAGCATGTGTATTTTTATTTA 57.184 30.769 0.00 0.00 0.00 1.40
2063 3995 8.902806 TGAGGGAGCATGTGTATTTTTATTTAG 58.097 33.333 0.00 0.00 0.00 1.85
2064 3996 9.120538 GAGGGAGCATGTGTATTTTTATTTAGA 57.879 33.333 0.00 0.00 0.00 2.10
2065 3997 9.474313 AGGGAGCATGTGTATTTTTATTTAGAA 57.526 29.630 0.00 0.00 0.00 2.10
2081 4013 9.429109 TTTATTTAGAAAAGATGGATTACCCCC 57.571 33.333 0.00 0.00 34.81 5.40
2082 4014 3.577805 AGAAAAGATGGATTACCCCCG 57.422 47.619 0.00 0.00 34.81 5.73
2083 4015 2.174854 AGAAAAGATGGATTACCCCCGG 59.825 50.000 0.00 0.00 34.81 5.73
2084 4016 1.603634 AAAGATGGATTACCCCCGGT 58.396 50.000 0.00 0.00 40.16 5.28
2085 4017 1.137697 AAGATGGATTACCCCCGGTC 58.862 55.000 0.00 0.00 37.09 4.79
2086 4018 0.267960 AGATGGATTACCCCCGGTCT 59.732 55.000 0.00 0.00 37.09 3.85
2087 4019 0.685660 GATGGATTACCCCCGGTCTC 59.314 60.000 0.00 0.00 37.09 3.36
2088 4020 0.030501 ATGGATTACCCCCGGTCTCA 60.031 55.000 0.00 0.00 37.09 3.27
2089 4021 0.252789 TGGATTACCCCCGGTCTCAA 60.253 55.000 0.00 0.00 37.09 3.02
2090 4022 0.913924 GGATTACCCCCGGTCTCAAA 59.086 55.000 0.00 0.00 37.09 2.69
2091 4023 1.282738 GGATTACCCCCGGTCTCAAAA 59.717 52.381 0.00 0.00 37.09 2.44
2092 4024 2.640184 GATTACCCCCGGTCTCAAAAG 58.360 52.381 0.00 0.00 37.09 2.27
2093 4025 1.732117 TTACCCCCGGTCTCAAAAGA 58.268 50.000 0.00 0.00 37.09 2.52
2094 4026 1.961133 TACCCCCGGTCTCAAAAGAT 58.039 50.000 0.00 0.00 37.09 2.40
2095 4027 1.961133 ACCCCCGGTCTCAAAAGATA 58.039 50.000 0.00 0.00 33.08 1.98
2096 4028 2.271777 ACCCCCGGTCTCAAAAGATAA 58.728 47.619 0.00 0.00 33.08 1.75
2097 4029 2.645797 ACCCCCGGTCTCAAAAGATAAA 59.354 45.455 0.00 0.00 33.08 1.40
2098 4030 3.074836 ACCCCCGGTCTCAAAAGATAAAA 59.925 43.478 0.00 0.00 33.08 1.52
2099 4031 4.264217 ACCCCCGGTCTCAAAAGATAAAAT 60.264 41.667 0.00 0.00 33.08 1.82
2100 4032 5.044698 ACCCCCGGTCTCAAAAGATAAAATA 60.045 40.000 0.00 0.00 33.08 1.40
2108 4040 9.396022 GGTCTCAAAAGATAAAATATCCACTCA 57.604 33.333 0.00 0.00 33.08 3.41
2212 4144 8.250332 TGAGGGAGCATGTGTTATTTTATTTTC 58.750 33.333 0.00 0.00 0.00 2.29
2239 4171 8.597662 TTTAGAAAATAAGGATTATCCCGACG 57.402 34.615 7.76 0.00 41.21 5.12
2260 4192 6.371809 ACGTCTACATCAATGTGTTGTTTT 57.628 33.333 5.89 0.00 41.89 2.43
2273 4205 9.921637 CAATGTGTTGTTTTATGTAAATAGGGT 57.078 29.630 0.00 0.00 0.00 4.34
2293 4225 4.278310 GGTAACAAAATATGGAGTGGCCT 58.722 43.478 3.32 0.00 37.63 5.19
2311 4244 6.390165 AGTGGCCTCCTTTATAATAGAAACCT 59.610 38.462 3.32 0.00 0.00 3.50
2315 4248 6.543735 CCTCCTTTATAATAGAAACCTGGGG 58.456 44.000 0.00 0.00 0.00 4.96
2340 4274 4.156455 ACTGAACAACTGAGACACCATT 57.844 40.909 0.00 0.00 0.00 3.16
2432 4373 5.505286 CATCAGCAACGCCTTTAGAAATAG 58.495 41.667 0.00 0.00 0.00 1.73
2436 4377 7.217200 TCAGCAACGCCTTTAGAAATAGATAT 58.783 34.615 0.00 0.00 0.00 1.63
2437 4378 8.364894 TCAGCAACGCCTTTAGAAATAGATATA 58.635 33.333 0.00 0.00 0.00 0.86
2604 4546 4.056092 TGCATGCAAGAATGTTTTGTGA 57.944 36.364 20.30 0.00 0.00 3.58
2646 4655 6.699575 AGCAAGTTAAGAAACATGTTCACT 57.300 33.333 12.39 11.53 36.81 3.41
2648 4657 5.173854 GCAAGTTAAGAAACATGTTCACTGC 59.826 40.000 12.39 9.78 36.81 4.40
2720 4730 4.338682 ACATAGGTTCAAGGTAGACGCTAG 59.661 45.833 0.00 0.00 0.00 3.42
2722 4732 2.754002 AGGTTCAAGGTAGACGCTAGAC 59.246 50.000 0.00 0.00 0.00 2.59
2730 4740 6.096423 TCAAGGTAGACGCTAGACACAATATT 59.904 38.462 0.00 0.00 0.00 1.28
2732 4742 6.968250 AGGTAGACGCTAGACACAATATTAC 58.032 40.000 0.00 0.00 0.00 1.89
2734 4744 4.856664 AGACGCTAGACACAATATTACGG 58.143 43.478 0.00 0.00 0.00 4.02
2735 4745 4.577693 AGACGCTAGACACAATATTACGGA 59.422 41.667 0.00 0.00 0.00 4.69
2740 4750 8.086522 ACGCTAGACACAATATTACGGATTATT 58.913 33.333 0.00 0.00 0.00 1.40
2762 4772 2.723124 AACGATTGTTGGATGGTTGC 57.277 45.000 0.00 0.00 36.81 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.823647 GACCTCTAGAACAAGATCAATATTGAA 57.176 33.333 21.50 6.19 41.13 2.69
39 40 9.206690 AGACCTCTAGAACAAGATCAATATTGA 57.793 33.333 20.07 20.07 42.14 2.57
40 41 9.829507 AAGACCTCTAGAACAAGATCAATATTG 57.170 33.333 9.29 9.29 35.27 1.90
41 42 9.829507 CAAGACCTCTAGAACAAGATCAATATT 57.170 33.333 0.00 0.00 0.00 1.28
42 43 8.428063 CCAAGACCTCTAGAACAAGATCAATAT 58.572 37.037 0.00 0.00 0.00 1.28
43 44 7.633772 GCCAAGACCTCTAGAACAAGATCAATA 60.634 40.741 0.00 0.00 0.00 1.90
44 45 6.648192 CCAAGACCTCTAGAACAAGATCAAT 58.352 40.000 0.00 0.00 0.00 2.57
45 46 5.569630 GCCAAGACCTCTAGAACAAGATCAA 60.570 44.000 0.00 0.00 0.00 2.57
46 47 4.081420 GCCAAGACCTCTAGAACAAGATCA 60.081 45.833 0.00 0.00 0.00 2.92
47 48 4.438148 GCCAAGACCTCTAGAACAAGATC 58.562 47.826 0.00 0.00 0.00 2.75
48 49 3.118956 CGCCAAGACCTCTAGAACAAGAT 60.119 47.826 0.00 0.00 0.00 2.40
49 50 2.231478 CGCCAAGACCTCTAGAACAAGA 59.769 50.000 0.00 0.00 0.00 3.02
50 51 2.231478 TCGCCAAGACCTCTAGAACAAG 59.769 50.000 0.00 0.00 0.00 3.16
51 52 2.029290 GTCGCCAAGACCTCTAGAACAA 60.029 50.000 0.00 0.00 43.95 2.83
52 53 1.544691 GTCGCCAAGACCTCTAGAACA 59.455 52.381 0.00 0.00 43.95 3.18
53 54 2.281140 GTCGCCAAGACCTCTAGAAC 57.719 55.000 0.00 0.00 43.95 3.01
63 64 0.756294 TTGAACTCCTGTCGCCAAGA 59.244 50.000 0.00 0.00 0.00 3.02
64 65 1.593196 TTTGAACTCCTGTCGCCAAG 58.407 50.000 0.00 0.00 0.00 3.61
65 66 2.270352 ATTTGAACTCCTGTCGCCAA 57.730 45.000 0.00 0.00 0.00 4.52
66 67 3.627395 ATATTTGAACTCCTGTCGCCA 57.373 42.857 0.00 0.00 0.00 5.69
67 68 7.724305 TTTATATATTTGAACTCCTGTCGCC 57.276 36.000 0.00 0.00 0.00 5.54
68 69 9.599322 CATTTTATATATTTGAACTCCTGTCGC 57.401 33.333 0.00 0.00 0.00 5.19
117 118 9.537192 GGCAATTTCATTCATTCATATCTTTGA 57.463 29.630 0.00 0.00 0.00 2.69
118 119 9.320352 TGGCAATTTCATTCATTCATATCTTTG 57.680 29.630 0.00 0.00 0.00 2.77
119 120 9.893634 TTGGCAATTTCATTCATTCATATCTTT 57.106 25.926 0.00 0.00 0.00 2.52
120 121 9.893634 TTTGGCAATTTCATTCATTCATATCTT 57.106 25.926 0.00 0.00 0.00 2.40
121 122 9.542462 CTTTGGCAATTTCATTCATTCATATCT 57.458 29.630 0.00 0.00 0.00 1.98
122 123 9.537192 TCTTTGGCAATTTCATTCATTCATATC 57.463 29.630 0.00 0.00 0.00 1.63
123 124 9.893634 TTCTTTGGCAATTTCATTCATTCATAT 57.106 25.926 0.00 0.00 0.00 1.78
124 125 9.722184 TTTCTTTGGCAATTTCATTCATTCATA 57.278 25.926 0.00 0.00 0.00 2.15
125 126 8.624367 TTTCTTTGGCAATTTCATTCATTCAT 57.376 26.923 0.00 0.00 0.00 2.57
126 127 8.447924 TTTTCTTTGGCAATTTCATTCATTCA 57.552 26.923 0.00 0.00 0.00 2.57
127 128 8.776470 TCTTTTCTTTGGCAATTTCATTCATTC 58.224 29.630 0.00 0.00 0.00 2.67
128 129 8.680039 TCTTTTCTTTGGCAATTTCATTCATT 57.320 26.923 0.00 0.00 0.00 2.57
129 130 8.680039 TTCTTTTCTTTGGCAATTTCATTCAT 57.320 26.923 0.00 0.00 0.00 2.57
130 131 8.503458 TTTCTTTTCTTTGGCAATTTCATTCA 57.497 26.923 0.00 0.00 0.00 2.57
131 132 8.071967 CCTTTCTTTTCTTTGGCAATTTCATTC 58.928 33.333 0.00 0.00 0.00 2.67
132 133 7.469043 GCCTTTCTTTTCTTTGGCAATTTCATT 60.469 33.333 0.00 0.00 40.04 2.57
133 134 6.016860 GCCTTTCTTTTCTTTGGCAATTTCAT 60.017 34.615 0.00 0.00 40.04 2.57
134 135 5.296531 GCCTTTCTTTTCTTTGGCAATTTCA 59.703 36.000 0.00 0.00 40.04 2.69
135 136 5.296531 TGCCTTTCTTTTCTTTGGCAATTTC 59.703 36.000 0.00 0.00 45.92 2.17
136 137 5.192176 TGCCTTTCTTTTCTTTGGCAATTT 58.808 33.333 0.00 0.00 45.92 1.82
137 138 4.779696 TGCCTTTCTTTTCTTTGGCAATT 58.220 34.783 0.00 0.00 45.92 2.32
138 139 4.420522 TGCCTTTCTTTTCTTTGGCAAT 57.579 36.364 0.00 0.00 45.92 3.56
139 140 3.902881 TGCCTTTCTTTTCTTTGGCAA 57.097 38.095 0.00 0.00 45.92 4.52
140 141 2.102925 CCTGCCTTTCTTTTCTTTGGCA 59.897 45.455 0.00 0.00 46.59 4.92
141 142 2.365293 TCCTGCCTTTCTTTTCTTTGGC 59.635 45.455 0.00 0.00 40.62 4.52
142 143 4.879197 ATCCTGCCTTTCTTTTCTTTGG 57.121 40.909 0.00 0.00 0.00 3.28
143 144 8.837788 ATTAAATCCTGCCTTTCTTTTCTTTG 57.162 30.769 0.00 0.00 0.00 2.77
144 145 8.874156 AGATTAAATCCTGCCTTTCTTTTCTTT 58.126 29.630 0.00 0.00 0.00 2.52
145 146 8.427902 AGATTAAATCCTGCCTTTCTTTTCTT 57.572 30.769 0.00 0.00 0.00 2.52
146 147 7.148171 CGAGATTAAATCCTGCCTTTCTTTTCT 60.148 37.037 0.00 0.00 0.00 2.52
147 148 6.969473 CGAGATTAAATCCTGCCTTTCTTTTC 59.031 38.462 0.00 0.00 0.00 2.29
148 149 6.625960 GCGAGATTAAATCCTGCCTTTCTTTT 60.626 38.462 0.00 0.00 0.00 2.27
149 150 5.163612 GCGAGATTAAATCCTGCCTTTCTTT 60.164 40.000 0.00 0.00 0.00 2.52
150 151 4.336713 GCGAGATTAAATCCTGCCTTTCTT 59.663 41.667 0.00 0.00 0.00 2.52
151 152 3.879892 GCGAGATTAAATCCTGCCTTTCT 59.120 43.478 0.00 0.00 0.00 2.52
152 153 3.627577 TGCGAGATTAAATCCTGCCTTTC 59.372 43.478 0.00 0.00 0.00 2.62
153 154 3.620488 TGCGAGATTAAATCCTGCCTTT 58.380 40.909 0.00 0.00 0.00 3.11
154 155 3.281727 TGCGAGATTAAATCCTGCCTT 57.718 42.857 0.00 0.00 0.00 4.35
155 156 3.144506 CATGCGAGATTAAATCCTGCCT 58.855 45.455 0.00 0.00 0.00 4.75
156 157 2.351157 GCATGCGAGATTAAATCCTGCC 60.351 50.000 0.00 0.00 0.00 4.85
157 158 2.663879 CGCATGCGAGATTAAATCCTGC 60.664 50.000 35.82 0.00 42.83 4.85
158 159 2.545526 ACGCATGCGAGATTAAATCCTG 59.454 45.455 43.72 12.37 42.83 3.86
159 160 2.838736 ACGCATGCGAGATTAAATCCT 58.161 42.857 43.72 16.28 42.83 3.24
160 161 4.641954 CATACGCATGCGAGATTAAATCC 58.358 43.478 43.72 0.00 42.83 3.01
176 177 1.651987 TGCTCTAAAGGTGCATACGC 58.348 50.000 0.00 0.00 39.16 4.42
181 182 2.584835 AACCATGCTCTAAAGGTGCA 57.415 45.000 0.00 0.00 46.32 4.57
182 183 6.693315 TTATTAACCATGCTCTAAAGGTGC 57.307 37.500 0.00 0.00 33.93 5.01
187 188 9.378551 CGGCTATATTATTAACCATGCTCTAAA 57.621 33.333 0.00 0.00 0.00 1.85
188 189 7.985184 CCGGCTATATTATTAACCATGCTCTAA 59.015 37.037 0.00 0.00 0.00 2.10
189 190 7.497595 CCGGCTATATTATTAACCATGCTCTA 58.502 38.462 0.00 0.00 0.00 2.43
190 191 6.349300 CCGGCTATATTATTAACCATGCTCT 58.651 40.000 0.00 0.00 0.00 4.09
191 192 5.007724 GCCGGCTATATTATTAACCATGCTC 59.992 44.000 22.15 0.00 0.00 4.26
192 193 4.881850 GCCGGCTATATTATTAACCATGCT 59.118 41.667 22.15 0.00 0.00 3.79
193 194 4.881850 AGCCGGCTATATTATTAACCATGC 59.118 41.667 31.86 0.00 0.00 4.06
194 195 5.220854 GCAGCCGGCTATATTATTAACCATG 60.221 44.000 32.30 12.93 40.25 3.66
195 196 4.881850 GCAGCCGGCTATATTATTAACCAT 59.118 41.667 32.30 0.00 40.25 3.55
196 197 4.258543 GCAGCCGGCTATATTATTAACCA 58.741 43.478 32.30 0.00 40.25 3.67
197 198 4.877323 GCAGCCGGCTATATTATTAACC 57.123 45.455 32.30 1.84 40.25 2.85
211 212 0.251354 ATCATATAGCCAGCAGCCGG 59.749 55.000 0.00 0.00 45.47 6.13
212 213 1.338484 ACATCATATAGCCAGCAGCCG 60.338 52.381 0.00 0.00 45.47 5.52
213 214 2.486472 ACATCATATAGCCAGCAGCC 57.514 50.000 0.00 0.00 45.47 4.85
214 215 2.095364 GCAACATCATATAGCCAGCAGC 60.095 50.000 0.00 0.00 44.25 5.25
215 216 2.486982 GGCAACATCATATAGCCAGCAG 59.513 50.000 0.00 0.00 44.59 4.24
216 217 2.507484 GGCAACATCATATAGCCAGCA 58.493 47.619 0.00 0.00 44.59 4.41
231 232 2.550978 AGCTATATGTGACGTGGCAAC 58.449 47.619 0.00 0.00 0.00 4.17
232 233 2.979814 AGCTATATGTGACGTGGCAA 57.020 45.000 0.00 0.00 0.00 4.52
233 234 3.798889 GCTTAGCTATATGTGACGTGGCA 60.799 47.826 0.00 0.00 0.00 4.92
234 235 2.731976 GCTTAGCTATATGTGACGTGGC 59.268 50.000 0.00 0.00 0.00 5.01
235 236 4.244425 AGCTTAGCTATATGTGACGTGG 57.756 45.455 4.30 0.00 36.99 4.94
236 237 7.219154 GCTATAAGCTTAGCTATATGTGACGTG 59.781 40.741 7.32 0.00 41.15 4.49
237 238 7.251994 GCTATAAGCTTAGCTATATGTGACGT 58.748 38.462 7.32 0.00 41.15 4.34
238 239 6.693545 GGCTATAAGCTTAGCTATATGTGACG 59.306 42.308 18.32 0.00 43.37 4.35
239 240 6.693545 CGGCTATAAGCTTAGCTATATGTGAC 59.306 42.308 18.32 6.98 43.37 3.67
240 241 6.183360 CCGGCTATAAGCTTAGCTATATGTGA 60.183 42.308 18.32 0.00 43.37 3.58
241 242 5.980116 CCGGCTATAAGCTTAGCTATATGTG 59.020 44.000 18.32 6.92 43.37 3.21
242 243 5.452077 GCCGGCTATAAGCTTAGCTATATGT 60.452 44.000 22.15 0.00 43.37 2.29
243 244 4.985409 GCCGGCTATAAGCTTAGCTATATG 59.015 45.833 22.15 0.00 43.37 1.78
244 245 4.649674 TGCCGGCTATAAGCTTAGCTATAT 59.350 41.667 29.70 10.10 43.37 0.86
245 246 4.021229 TGCCGGCTATAAGCTTAGCTATA 58.979 43.478 29.70 2.94 43.37 1.31
246 247 2.832129 TGCCGGCTATAAGCTTAGCTAT 59.168 45.455 29.70 4.42 43.37 2.97
247 248 2.244695 TGCCGGCTATAAGCTTAGCTA 58.755 47.619 29.70 0.00 43.37 3.32
248 249 1.048601 TGCCGGCTATAAGCTTAGCT 58.951 50.000 29.70 0.00 43.37 3.32
249 250 1.801178 CTTGCCGGCTATAAGCTTAGC 59.199 52.381 29.70 12.27 41.99 3.09
250 251 3.113260 ACTTGCCGGCTATAAGCTTAG 57.887 47.619 29.70 8.00 41.99 2.18
251 252 3.385433 TGTACTTGCCGGCTATAAGCTTA 59.615 43.478 29.70 8.99 41.99 3.09
252 253 2.169769 TGTACTTGCCGGCTATAAGCTT 59.830 45.455 29.70 10.38 41.99 3.74
253 254 1.760613 TGTACTTGCCGGCTATAAGCT 59.239 47.619 29.70 14.87 41.99 3.74
254 255 2.234300 TGTACTTGCCGGCTATAAGC 57.766 50.000 29.70 13.71 41.46 3.09
255 256 4.389077 GCTATTGTACTTGCCGGCTATAAG 59.611 45.833 29.70 24.29 0.00 1.73
256 257 4.039973 AGCTATTGTACTTGCCGGCTATAA 59.960 41.667 29.70 16.35 0.00 0.98
257 258 3.576982 AGCTATTGTACTTGCCGGCTATA 59.423 43.478 29.70 14.26 0.00 1.31
258 259 2.368875 AGCTATTGTACTTGCCGGCTAT 59.631 45.455 29.70 15.37 0.00 2.97
259 260 1.760613 AGCTATTGTACTTGCCGGCTA 59.239 47.619 29.70 20.51 0.00 3.93
260 261 0.541863 AGCTATTGTACTTGCCGGCT 59.458 50.000 29.70 10.43 0.00 5.52
261 262 0.657840 CAGCTATTGTACTTGCCGGC 59.342 55.000 22.73 22.73 0.00 6.13
262 263 2.309528 TCAGCTATTGTACTTGCCGG 57.690 50.000 0.00 0.00 0.00 6.13
263 264 6.545504 AATATTCAGCTATTGTACTTGCCG 57.454 37.500 0.00 0.00 0.00 5.69
289 290 9.426837 GGTCATGTAACAACAAAGTAGTACATA 57.573 33.333 2.52 0.00 0.00 2.29
290 291 7.389607 GGGTCATGTAACAACAAAGTAGTACAT 59.610 37.037 2.52 0.00 0.00 2.29
291 292 6.707161 GGGTCATGTAACAACAAAGTAGTACA 59.293 38.462 2.52 0.00 0.00 2.90
292 293 6.707161 TGGGTCATGTAACAACAAAGTAGTAC 59.293 38.462 0.00 0.00 0.00 2.73
293 294 6.707161 GTGGGTCATGTAACAACAAAGTAGTA 59.293 38.462 0.00 0.00 0.00 1.82
294 295 5.529800 GTGGGTCATGTAACAACAAAGTAGT 59.470 40.000 0.00 0.00 0.00 2.73
295 296 5.048991 GGTGGGTCATGTAACAACAAAGTAG 60.049 44.000 0.00 0.00 0.00 2.57
296 297 4.822896 GGTGGGTCATGTAACAACAAAGTA 59.177 41.667 0.00 0.00 0.00 2.24
297 298 3.634910 GGTGGGTCATGTAACAACAAAGT 59.365 43.478 0.00 0.00 0.00 2.66
298 299 3.888930 AGGTGGGTCATGTAACAACAAAG 59.111 43.478 0.00 0.00 0.00 2.77
299 300 3.886505 GAGGTGGGTCATGTAACAACAAA 59.113 43.478 0.00 0.00 0.00 2.83
300 301 3.482436 GAGGTGGGTCATGTAACAACAA 58.518 45.455 0.00 0.00 0.00 2.83
301 302 2.549134 CGAGGTGGGTCATGTAACAACA 60.549 50.000 0.00 0.00 0.00 3.33
302 303 2.073816 CGAGGTGGGTCATGTAACAAC 58.926 52.381 0.00 0.00 0.00 3.32
303 304 1.609580 GCGAGGTGGGTCATGTAACAA 60.610 52.381 0.00 0.00 0.00 2.83
304 305 0.036765 GCGAGGTGGGTCATGTAACA 60.037 55.000 0.00 0.00 0.00 2.41
305 306 0.249398 AGCGAGGTGGGTCATGTAAC 59.751 55.000 0.00 0.00 0.00 2.50
306 307 0.535335 GAGCGAGGTGGGTCATGTAA 59.465 55.000 0.00 0.00 34.64 2.41
307 308 0.324368 AGAGCGAGGTGGGTCATGTA 60.324 55.000 0.00 0.00 36.90 2.29
308 309 1.194781 AAGAGCGAGGTGGGTCATGT 61.195 55.000 0.00 0.00 36.90 3.21
309 310 0.036010 AAAGAGCGAGGTGGGTCATG 60.036 55.000 0.00 0.00 36.90 3.07
310 311 0.250513 GAAAGAGCGAGGTGGGTCAT 59.749 55.000 0.00 0.00 36.90 3.06
311 312 1.118965 TGAAAGAGCGAGGTGGGTCA 61.119 55.000 0.00 0.00 36.90 4.02
312 313 0.670854 GTGAAAGAGCGAGGTGGGTC 60.671 60.000 0.00 0.00 34.71 4.46
313 314 1.371558 GTGAAAGAGCGAGGTGGGT 59.628 57.895 0.00 0.00 0.00 4.51
314 315 0.250295 TTGTGAAAGAGCGAGGTGGG 60.250 55.000 0.00 0.00 0.00 4.61
315 316 1.532868 CTTTGTGAAAGAGCGAGGTGG 59.467 52.381 0.00 0.00 41.02 4.61
316 317 2.213499 ACTTTGTGAAAGAGCGAGGTG 58.787 47.619 3.11 0.00 41.02 4.00
317 318 2.622064 ACTTTGTGAAAGAGCGAGGT 57.378 45.000 3.11 0.00 41.02 3.85
318 319 2.737252 GGTACTTTGTGAAAGAGCGAGG 59.263 50.000 3.11 0.00 41.02 4.63
319 320 3.654414 AGGTACTTTGTGAAAGAGCGAG 58.346 45.455 3.11 0.00 41.02 5.03
320 321 3.746045 AGGTACTTTGTGAAAGAGCGA 57.254 42.857 3.11 0.00 41.02 4.93
321 322 3.927142 CCTAGGTACTTTGTGAAAGAGCG 59.073 47.826 0.00 0.00 41.02 5.03
322 323 5.148651 TCCTAGGTACTTTGTGAAAGAGC 57.851 43.478 9.08 0.00 41.02 4.09
323 324 5.172205 GCTCCTAGGTACTTTGTGAAAGAG 58.828 45.833 9.08 0.00 41.02 2.85
324 325 4.591498 TGCTCCTAGGTACTTTGTGAAAGA 59.409 41.667 9.08 0.00 41.02 2.52
325 326 4.894784 TGCTCCTAGGTACTTTGTGAAAG 58.105 43.478 9.08 0.00 44.10 2.62
326 327 4.967084 TGCTCCTAGGTACTTTGTGAAA 57.033 40.909 9.08 0.00 41.75 2.69
327 328 6.582636 CATATGCTCCTAGGTACTTTGTGAA 58.417 40.000 9.08 0.00 41.75 3.18
328 329 5.453339 GCATATGCTCCTAGGTACTTTGTGA 60.453 44.000 20.64 0.00 37.83 3.58
329 330 4.752101 GCATATGCTCCTAGGTACTTTGTG 59.248 45.833 20.64 2.87 37.83 3.33
330 331 4.962155 GCATATGCTCCTAGGTACTTTGT 58.038 43.478 20.64 0.00 37.83 2.83
345 346 1.302033 AGCCGGCTACAGCATATGC 60.302 57.895 31.86 20.36 44.36 3.14
346 347 0.250038 ACAGCCGGCTACAGCATATG 60.250 55.000 32.30 17.12 44.36 1.78
347 348 0.469917 AACAGCCGGCTACAGCATAT 59.530 50.000 32.30 0.00 44.36 1.78
348 349 1.116308 TAACAGCCGGCTACAGCATA 58.884 50.000 32.30 12.86 44.36 3.14
349 350 0.251916 TTAACAGCCGGCTACAGCAT 59.748 50.000 32.30 13.90 44.36 3.79
350 351 0.672401 GTTAACAGCCGGCTACAGCA 60.672 55.000 32.30 9.73 44.36 4.41
351 352 0.391263 AGTTAACAGCCGGCTACAGC 60.391 55.000 32.30 18.46 41.14 4.40
352 353 2.165845 ACTAGTTAACAGCCGGCTACAG 59.834 50.000 32.30 22.58 0.00 2.74
353 354 2.173519 ACTAGTTAACAGCCGGCTACA 58.826 47.619 32.30 14.62 0.00 2.74
354 355 2.955477 ACTAGTTAACAGCCGGCTAC 57.045 50.000 32.30 23.99 0.00 3.58
355 356 3.629398 GTCTACTAGTTAACAGCCGGCTA 59.371 47.826 32.30 11.93 0.00 3.93
356 357 2.426381 GTCTACTAGTTAACAGCCGGCT 59.574 50.000 27.08 27.08 0.00 5.52
357 358 2.480932 GGTCTACTAGTTAACAGCCGGC 60.481 54.545 21.89 21.89 0.00 6.13
358 359 2.223433 CGGTCTACTAGTTAACAGCCGG 60.223 54.545 8.61 0.00 33.87 6.13
359 360 2.793933 GCGGTCTACTAGTTAACAGCCG 60.794 54.545 16.36 16.07 39.63 5.52
360 361 2.426381 AGCGGTCTACTAGTTAACAGCC 59.574 50.000 20.67 9.75 34.03 4.85
361 362 3.779271 AGCGGTCTACTAGTTAACAGC 57.221 47.619 18.29 18.29 33.78 4.40
362 363 5.354792 AGAGAAGCGGTCTACTAGTTAACAG 59.645 44.000 8.61 6.00 36.41 3.16
363 364 5.251764 AGAGAAGCGGTCTACTAGTTAACA 58.748 41.667 8.61 0.00 36.41 2.41
364 365 5.816449 AGAGAAGCGGTCTACTAGTTAAC 57.184 43.478 0.00 0.00 36.41 2.01
365 366 6.179040 AGAAGAGAAGCGGTCTACTAGTTAA 58.821 40.000 0.00 0.00 36.41 2.01
366 367 5.743117 AGAAGAGAAGCGGTCTACTAGTTA 58.257 41.667 0.00 0.00 36.41 2.24
367 368 4.591929 AGAAGAGAAGCGGTCTACTAGTT 58.408 43.478 0.00 0.00 36.41 2.24
368 369 4.080751 AGAGAAGAGAAGCGGTCTACTAGT 60.081 45.833 0.00 0.00 36.41 2.57
369 370 4.448210 AGAGAAGAGAAGCGGTCTACTAG 58.552 47.826 0.00 0.00 36.41 2.57
370 371 4.162698 AGAGAGAAGAGAAGCGGTCTACTA 59.837 45.833 0.00 0.00 36.41 1.82
371 372 3.054655 AGAGAGAAGAGAAGCGGTCTACT 60.055 47.826 0.00 0.00 36.41 2.57
372 373 3.275999 AGAGAGAAGAGAAGCGGTCTAC 58.724 50.000 0.00 0.00 36.41 2.59
373 374 3.537580 GAGAGAGAAGAGAAGCGGTCTA 58.462 50.000 0.00 0.00 36.41 2.59
374 375 2.365582 GAGAGAGAAGAGAAGCGGTCT 58.634 52.381 0.00 0.00 40.25 3.85
375 376 1.404035 GGAGAGAGAAGAGAAGCGGTC 59.596 57.143 0.00 0.00 0.00 4.79
376 377 1.005450 AGGAGAGAGAAGAGAAGCGGT 59.995 52.381 0.00 0.00 0.00 5.68
377 378 1.762708 AGGAGAGAGAAGAGAAGCGG 58.237 55.000 0.00 0.00 0.00 5.52
378 379 3.866883 AAAGGAGAGAGAAGAGAAGCG 57.133 47.619 0.00 0.00 0.00 4.68
397 398 7.639113 TTTGCTTAGTTGGAAGAGAGAAAAA 57.361 32.000 0.00 0.00 0.00 1.94
398 399 7.639113 TTTTGCTTAGTTGGAAGAGAGAAAA 57.361 32.000 0.00 0.00 0.00 2.29
399 400 7.639113 TTTTTGCTTAGTTGGAAGAGAGAAA 57.361 32.000 0.00 0.00 0.00 2.52
400 401 7.823745 ATTTTTGCTTAGTTGGAAGAGAGAA 57.176 32.000 0.00 0.00 0.00 2.87
437 438 0.464452 ATGTAGGCGGGCTGTAAGAC 59.536 55.000 15.11 4.36 46.31 3.01
438 439 0.750850 GATGTAGGCGGGCTGTAAGA 59.249 55.000 15.11 0.00 34.07 2.10
439 440 0.464036 TGATGTAGGCGGGCTGTAAG 59.536 55.000 15.11 0.00 0.00 2.34
440 441 0.177141 GTGATGTAGGCGGGCTGTAA 59.823 55.000 15.11 0.00 0.00 2.41
441 442 1.682451 GGTGATGTAGGCGGGCTGTA 61.682 60.000 15.11 3.12 0.00 2.74
442 443 2.584608 GTGATGTAGGCGGGCTGT 59.415 61.111 15.11 0.00 0.00 4.40
443 444 2.203070 GGTGATGTAGGCGGGCTG 60.203 66.667 15.11 0.00 0.00 4.85
444 445 0.689745 TAAGGTGATGTAGGCGGGCT 60.690 55.000 9.68 9.68 0.00 5.19
445 446 0.396811 ATAAGGTGATGTAGGCGGGC 59.603 55.000 0.00 0.00 0.00 6.13
446 447 2.158813 ACAATAAGGTGATGTAGGCGGG 60.159 50.000 0.00 0.00 0.00 6.13
447 448 3.194005 ACAATAAGGTGATGTAGGCGG 57.806 47.619 0.00 0.00 0.00 6.13
448 449 4.945246 AGTACAATAAGGTGATGTAGGCG 58.055 43.478 0.00 0.00 30.70 5.52
449 450 5.007724 GCAAGTACAATAAGGTGATGTAGGC 59.992 44.000 0.00 0.00 30.70 3.93
450 451 6.349300 AGCAAGTACAATAAGGTGATGTAGG 58.651 40.000 0.00 0.00 30.70 3.18
451 452 7.268586 AGAGCAAGTACAATAAGGTGATGTAG 58.731 38.462 0.00 0.00 30.70 2.74
452 453 7.182817 AGAGCAAGTACAATAAGGTGATGTA 57.817 36.000 0.00 0.00 0.00 2.29
453 454 6.054860 AGAGCAAGTACAATAAGGTGATGT 57.945 37.500 0.00 0.00 0.00 3.06
454 455 6.992063 AAGAGCAAGTACAATAAGGTGATG 57.008 37.500 0.00 0.00 0.00 3.07
455 456 6.757010 CGTAAGAGCAAGTACAATAAGGTGAT 59.243 38.462 0.00 0.00 43.02 3.06
456 457 6.097356 CGTAAGAGCAAGTACAATAAGGTGA 58.903 40.000 0.00 0.00 43.02 4.02
457 458 5.867716 ACGTAAGAGCAAGTACAATAAGGTG 59.132 40.000 0.00 0.00 43.62 4.00
458 459 5.867716 CACGTAAGAGCAAGTACAATAAGGT 59.132 40.000 0.00 0.00 43.62 3.50
459 460 6.097356 TCACGTAAGAGCAAGTACAATAAGG 58.903 40.000 0.00 0.00 43.62 2.69
460 461 7.445836 GTTCACGTAAGAGCAAGTACAATAAG 58.554 38.462 0.00 0.00 43.62 1.73
461 462 6.088483 CGTTCACGTAAGAGCAAGTACAATAA 59.912 38.462 0.00 0.00 43.62 1.40
462 463 5.570206 CGTTCACGTAAGAGCAAGTACAATA 59.430 40.000 0.00 0.00 43.62 1.90
463 464 4.384846 CGTTCACGTAAGAGCAAGTACAAT 59.615 41.667 0.00 0.00 43.62 2.71
464 465 3.732219 CGTTCACGTAAGAGCAAGTACAA 59.268 43.478 0.00 0.00 43.62 2.41
465 466 3.003585 TCGTTCACGTAAGAGCAAGTACA 59.996 43.478 0.00 0.00 43.62 2.90
466 467 3.558505 TCGTTCACGTAAGAGCAAGTAC 58.441 45.455 0.00 0.00 43.62 2.73
467 468 3.499537 TCTCGTTCACGTAAGAGCAAGTA 59.500 43.478 0.00 0.00 43.62 2.24
468 469 2.292569 TCTCGTTCACGTAAGAGCAAGT 59.707 45.455 0.00 0.00 43.62 3.16
469 470 2.929960 TCTCGTTCACGTAAGAGCAAG 58.070 47.619 0.00 0.00 43.62 4.01
470 471 3.004002 TCTTCTCGTTCACGTAAGAGCAA 59.996 43.478 12.67 0.00 37.45 3.91
471 472 2.551032 TCTTCTCGTTCACGTAAGAGCA 59.449 45.455 12.67 0.00 37.45 4.26
472 473 3.120269 TCTCTTCTCGTTCACGTAAGAGC 60.120 47.826 25.67 0.00 46.75 4.09
474 475 4.152045 GTCTCTCTTCTCGTTCACGTAAGA 59.848 45.833 14.67 14.67 38.78 2.10
476 477 4.063689 AGTCTCTCTTCTCGTTCACGTAA 58.936 43.478 0.00 0.00 40.80 3.18
477 478 3.432592 CAGTCTCTCTTCTCGTTCACGTA 59.567 47.826 0.00 0.00 40.80 3.57
478 479 2.224549 CAGTCTCTCTTCTCGTTCACGT 59.775 50.000 0.00 0.00 40.80 4.49
479 480 2.413502 CCAGTCTCTCTTCTCGTTCACG 60.414 54.545 0.00 0.00 41.45 4.35
480 481 2.814919 TCCAGTCTCTCTTCTCGTTCAC 59.185 50.000 0.00 0.00 0.00 3.18
481 482 3.141767 TCCAGTCTCTCTTCTCGTTCA 57.858 47.619 0.00 0.00 0.00 3.18
482 483 4.712122 AATCCAGTCTCTCTTCTCGTTC 57.288 45.455 0.00 0.00 0.00 3.95
483 484 4.642885 CCTAATCCAGTCTCTCTTCTCGTT 59.357 45.833 0.00 0.00 0.00 3.85
484 485 4.204012 CCTAATCCAGTCTCTCTTCTCGT 58.796 47.826 0.00 0.00 0.00 4.18
485 486 3.004315 GCCTAATCCAGTCTCTCTTCTCG 59.996 52.174 0.00 0.00 0.00 4.04
497 498 3.220110 ACTTGATGCATGCCTAATCCAG 58.780 45.455 16.68 14.45 0.00 3.86
500 501 7.678947 AGTATTACTTGATGCATGCCTAATC 57.321 36.000 16.68 12.24 0.00 1.75
503 504 9.219603 GATAAAGTATTACTTGATGCATGCCTA 57.780 33.333 16.68 0.00 38.66 3.93
537 538 1.284657 GTCACATCAGATGACAGGCG 58.715 55.000 17.81 0.00 44.87 5.52
543 546 8.741603 ATTCAATATTGTGTCACATCAGATGA 57.258 30.769 17.81 5.81 0.00 2.92
562 565 8.537728 TTTCCAAAGAGTATGGCATATTCAAT 57.462 30.769 25.81 14.78 37.88 2.57
569 572 6.426587 AGTGTATTTCCAAAGAGTATGGCAT 58.573 36.000 4.88 4.88 37.88 4.40
570 573 5.815581 AGTGTATTTCCAAAGAGTATGGCA 58.184 37.500 0.00 0.00 37.88 4.92
576 579 9.760077 CCGTATATTAGTGTATTTCCAAAGAGT 57.240 33.333 0.00 0.00 0.00 3.24
577 580 9.204570 CCCGTATATTAGTGTATTTCCAAAGAG 57.795 37.037 0.00 0.00 0.00 2.85
582 585 8.528643 CATCTCCCGTATATTAGTGTATTTCCA 58.471 37.037 0.00 0.00 0.00 3.53
585 588 8.311836 CCACATCTCCCGTATATTAGTGTATTT 58.688 37.037 0.00 0.00 0.00 1.40
600 603 4.864334 GCTGGCCCACATCTCCCG 62.864 72.222 0.00 0.00 0.00 5.14
602 605 1.304381 TTTGCTGGCCCACATCTCC 60.304 57.895 0.00 0.00 0.00 3.71
603 606 1.941999 GCTTTGCTGGCCCACATCTC 61.942 60.000 0.00 0.00 0.00 2.75
631 635 1.283736 GTGTCGTTCGTCCACTTTGT 58.716 50.000 9.20 0.00 0.00 2.83
646 650 2.172851 TTACCGGTGAACCATGTGTC 57.827 50.000 19.93 0.00 35.14 3.67
650 654 3.365969 GCTCTTTTTACCGGTGAACCATG 60.366 47.826 19.93 7.13 35.14 3.66
679 693 2.549992 GGCAACCAAGGGTTTTGGATTC 60.550 50.000 12.55 0.00 44.33 2.52
695 709 1.917872 TGTAAATCTGGGTGGGCAAC 58.082 50.000 0.00 0.00 0.00 4.17
696 710 2.917713 ATGTAAATCTGGGTGGGCAA 57.082 45.000 0.00 0.00 0.00 4.52
727 741 6.149474 CCTTCACTACTTCAAAATTGGACGAT 59.851 38.462 0.00 0.00 0.00 3.73
746 760 2.008329 CAAGATCTCAGCAGCCTTCAC 58.992 52.381 0.00 0.00 0.00 3.18
903 2733 5.515797 TCGTGTTTATATAGCTGTGCTCT 57.484 39.130 0.00 0.00 40.44 4.09
939 2771 1.566018 CCGCCGTCTGTTGTTTCTCC 61.566 60.000 0.00 0.00 0.00 3.71
952 2789 0.107897 TGTTTCTATGATGCCGCCGT 60.108 50.000 0.00 0.00 0.00 5.68
1645 3553 2.125106 ATTCCTGGAGTTCGCGCC 60.125 61.111 0.00 0.00 37.60 6.53
1648 3556 2.208431 CATCTCATTCCTGGAGTTCGC 58.792 52.381 0.00 0.00 34.04 4.70
1780 3701 4.382685 GGACTCGGTGTGGATCTCATTTTA 60.383 45.833 0.00 0.00 0.00 1.52
1783 3707 1.482593 GGACTCGGTGTGGATCTCATT 59.517 52.381 0.00 0.00 0.00 2.57
1810 3738 1.607148 CGATGCATGCAGGAATGATGT 59.393 47.619 26.69 5.33 0.00 3.06
1817 3745 1.519234 GACGTCGATGCATGCAGGA 60.519 57.895 26.69 21.58 0.00 3.86
1885 3817 3.132139 TCCGCTAGTCGCTCGCTT 61.132 61.111 0.00 0.00 36.73 4.68
1956 3888 1.905215 CTTCTGACCCAGAGTGGACAT 59.095 52.381 0.00 0.00 41.75 3.06
1957 3889 1.342074 CTTCTGACCCAGAGTGGACA 58.658 55.000 0.00 0.00 41.75 4.02
1958 3890 1.343069 ACTTCTGACCCAGAGTGGAC 58.657 55.000 0.00 0.00 41.75 4.02
1959 3891 1.971357 GAACTTCTGACCCAGAGTGGA 59.029 52.381 0.00 0.00 41.75 4.02
1960 3892 1.694150 TGAACTTCTGACCCAGAGTGG 59.306 52.381 0.00 0.00 41.75 4.00
1961 3893 3.692257 ATGAACTTCTGACCCAGAGTG 57.308 47.619 0.00 0.00 41.75 3.51
1962 3894 4.713792 AAATGAACTTCTGACCCAGAGT 57.286 40.909 0.00 0.00 41.75 3.24
1963 3895 4.938226 GGTAAATGAACTTCTGACCCAGAG 59.062 45.833 0.00 0.00 41.75 3.35
1964 3896 4.263331 GGGTAAATGAACTTCTGACCCAGA 60.263 45.833 12.51 0.00 43.84 3.86
1965 3897 4.010349 GGGTAAATGAACTTCTGACCCAG 58.990 47.826 12.51 0.00 43.84 4.45
1966 3898 3.655777 AGGGTAAATGAACTTCTGACCCA 59.344 43.478 16.72 0.00 46.32 4.51
1967 3899 4.302559 AGGGTAAATGAACTTCTGACCC 57.697 45.455 0.00 0.00 44.59 4.46
1968 3900 7.754851 TTTTAGGGTAAATGAACTTCTGACC 57.245 36.000 0.00 0.00 0.00 4.02
1977 3909 9.699703 GCACTACAAATTTTTAGGGTAAATGAA 57.300 29.630 13.71 0.00 0.00 2.57
1978 3910 8.024285 CGCACTACAAATTTTTAGGGTAAATGA 58.976 33.333 13.71 0.00 0.00 2.57
1979 3911 7.810759 ACGCACTACAAATTTTTAGGGTAAATG 59.189 33.333 13.71 4.82 0.00 2.32
1980 3912 7.810759 CACGCACTACAAATTTTTAGGGTAAAT 59.189 33.333 13.71 0.00 0.00 1.40
1981 3913 7.140048 CACGCACTACAAATTTTTAGGGTAAA 58.860 34.615 13.71 0.00 0.00 2.01
1982 3914 6.262720 ACACGCACTACAAATTTTTAGGGTAA 59.737 34.615 13.71 0.00 0.00 2.85
1983 3915 5.764192 ACACGCACTACAAATTTTTAGGGTA 59.236 36.000 13.71 1.31 0.00 3.69
1984 3916 4.581409 ACACGCACTACAAATTTTTAGGGT 59.419 37.500 13.71 7.14 0.00 4.34
1985 3917 5.116069 ACACGCACTACAAATTTTTAGGG 57.884 39.130 14.31 11.76 0.00 3.53
1986 3918 7.221067 TGAAAACACGCACTACAAATTTTTAGG 59.779 33.333 14.31 6.08 0.00 2.69
1987 3919 8.109843 TGAAAACACGCACTACAAATTTTTAG 57.890 30.769 9.36 9.36 0.00 1.85
1988 3920 8.462143 TTGAAAACACGCACTACAAATTTTTA 57.538 26.923 0.00 0.00 0.00 1.52
1989 3921 6.952935 TGAAAACACGCACTACAAATTTTT 57.047 29.167 0.00 0.00 0.00 1.94
1990 3922 6.952935 TTGAAAACACGCACTACAAATTTT 57.047 29.167 0.00 0.00 0.00 1.82
1991 3923 6.454981 GCTTTGAAAACACGCACTACAAATTT 60.455 34.615 0.00 0.00 0.00 1.82
1992 3924 5.005299 GCTTTGAAAACACGCACTACAAATT 59.995 36.000 0.00 0.00 0.00 1.82
1993 3925 4.502645 GCTTTGAAAACACGCACTACAAAT 59.497 37.500 0.00 0.00 0.00 2.32
1994 3926 3.854809 GCTTTGAAAACACGCACTACAAA 59.145 39.130 0.00 0.00 0.00 2.83
1995 3927 3.127895 AGCTTTGAAAACACGCACTACAA 59.872 39.130 0.00 0.00 0.00 2.41
1996 3928 2.680841 AGCTTTGAAAACACGCACTACA 59.319 40.909 0.00 0.00 0.00 2.74
1997 3929 3.242608 TGAGCTTTGAAAACACGCACTAC 60.243 43.478 0.00 0.00 0.00 2.73
1998 3930 2.939756 TGAGCTTTGAAAACACGCACTA 59.060 40.909 0.00 0.00 0.00 2.74
1999 3931 1.742831 TGAGCTTTGAAAACACGCACT 59.257 42.857 0.00 0.00 0.00 4.40
2000 3932 1.846175 GTGAGCTTTGAAAACACGCAC 59.154 47.619 0.00 0.00 0.00 5.34
2001 3933 1.470494 TGTGAGCTTTGAAAACACGCA 59.530 42.857 0.00 0.00 34.72 5.24
2002 3934 2.187351 TGTGAGCTTTGAAAACACGC 57.813 45.000 0.00 0.00 34.72 5.34
2003 3935 6.804534 TTATTTGTGAGCTTTGAAAACACG 57.195 33.333 0.00 0.00 34.72 4.49
2004 3936 9.986833 AAATTTATTTGTGAGCTTTGAAAACAC 57.013 25.926 0.00 0.00 0.00 3.32
2033 3965 6.418057 AAAATACACATGCTCCCTCAAAAA 57.582 33.333 0.00 0.00 0.00 1.94
2034 3966 6.418057 AAAAATACACATGCTCCCTCAAAA 57.582 33.333 0.00 0.00 0.00 2.44
2035 3967 7.716799 ATAAAAATACACATGCTCCCTCAAA 57.283 32.000 0.00 0.00 0.00 2.69
2036 3968 7.716799 AATAAAAATACACATGCTCCCTCAA 57.283 32.000 0.00 0.00 0.00 3.02
2037 3969 7.716799 AAATAAAAATACACATGCTCCCTCA 57.283 32.000 0.00 0.00 0.00 3.86
2038 3970 9.120538 TCTAAATAAAAATACACATGCTCCCTC 57.879 33.333 0.00 0.00 0.00 4.30
2039 3971 9.474313 TTCTAAATAAAAATACACATGCTCCCT 57.526 29.630 0.00 0.00 0.00 4.20
2055 3987 9.429109 GGGGGTAATCCATCTTTTCTAAATAAA 57.571 33.333 0.00 0.00 37.22 1.40
2056 3988 7.722285 CGGGGGTAATCCATCTTTTCTAAATAA 59.278 37.037 0.00 0.00 37.22 1.40
2057 3989 7.228590 CGGGGGTAATCCATCTTTTCTAAATA 58.771 38.462 0.00 0.00 37.22 1.40
2058 3990 6.068670 CGGGGGTAATCCATCTTTTCTAAAT 58.931 40.000 0.00 0.00 37.22 1.40
2059 3991 5.442391 CGGGGGTAATCCATCTTTTCTAAA 58.558 41.667 0.00 0.00 37.22 1.85
2060 3992 4.141344 CCGGGGGTAATCCATCTTTTCTAA 60.141 45.833 0.00 0.00 37.22 2.10
2061 3993 3.393278 CCGGGGGTAATCCATCTTTTCTA 59.607 47.826 0.00 0.00 37.22 2.10
2062 3994 2.174854 CCGGGGGTAATCCATCTTTTCT 59.825 50.000 0.00 0.00 37.22 2.52
2063 3995 2.092049 ACCGGGGGTAATCCATCTTTTC 60.092 50.000 6.32 0.00 37.22 2.29
2064 3996 1.927371 ACCGGGGGTAATCCATCTTTT 59.073 47.619 6.32 0.00 37.22 2.27
2065 3997 1.493446 GACCGGGGGTAATCCATCTTT 59.507 52.381 6.32 0.00 35.25 2.52
2066 3998 1.137697 GACCGGGGGTAATCCATCTT 58.862 55.000 6.32 0.00 35.25 2.40
2067 3999 0.267960 AGACCGGGGGTAATCCATCT 59.732 55.000 6.32 0.00 35.25 2.90
2068 4000 0.685660 GAGACCGGGGGTAATCCATC 59.314 60.000 6.32 0.00 35.25 3.51
2069 4001 0.030501 TGAGACCGGGGGTAATCCAT 60.031 55.000 6.32 0.00 35.25 3.41
2070 4002 0.252789 TTGAGACCGGGGGTAATCCA 60.253 55.000 6.32 0.00 35.25 3.41
2071 4003 0.913924 TTTGAGACCGGGGGTAATCC 59.086 55.000 6.32 0.00 35.25 3.01
2072 4004 2.237893 TCTTTTGAGACCGGGGGTAATC 59.762 50.000 6.32 0.00 35.25 1.75
2073 4005 2.271777 TCTTTTGAGACCGGGGGTAAT 58.728 47.619 6.32 0.00 35.25 1.89
2074 4006 1.732117 TCTTTTGAGACCGGGGGTAA 58.268 50.000 6.32 0.00 35.25 2.85
2075 4007 1.961133 ATCTTTTGAGACCGGGGGTA 58.039 50.000 6.32 0.00 35.25 3.69
2076 4008 1.961133 TATCTTTTGAGACCGGGGGT 58.039 50.000 6.32 0.00 39.44 4.95
2077 4009 3.359695 TTTATCTTTTGAGACCGGGGG 57.640 47.619 6.32 0.00 0.00 5.40
2078 4010 6.206829 GGATATTTTATCTTTTGAGACCGGGG 59.793 42.308 6.32 0.00 0.00 5.73
2079 4011 6.770785 TGGATATTTTATCTTTTGAGACCGGG 59.229 38.462 6.32 0.00 0.00 5.73
2080 4012 7.499232 AGTGGATATTTTATCTTTTGAGACCGG 59.501 37.037 0.00 0.00 0.00 5.28
2081 4013 8.438676 AGTGGATATTTTATCTTTTGAGACCG 57.561 34.615 0.00 0.00 0.00 4.79
2082 4014 9.396022 TGAGTGGATATTTTATCTTTTGAGACC 57.604 33.333 0.00 0.00 0.00 3.85
2084 4016 9.618890 CCTGAGTGGATATTTTATCTTTTGAGA 57.381 33.333 0.00 0.00 38.35 3.27
2085 4017 8.844244 CCCTGAGTGGATATTTTATCTTTTGAG 58.156 37.037 0.00 0.00 38.35 3.02
2086 4018 8.336235 ACCCTGAGTGGATATTTTATCTTTTGA 58.664 33.333 0.00 0.00 38.35 2.69
2087 4019 8.525290 ACCCTGAGTGGATATTTTATCTTTTG 57.475 34.615 0.00 0.00 38.35 2.44
2088 4020 8.336235 TGACCCTGAGTGGATATTTTATCTTTT 58.664 33.333 0.00 0.00 38.35 2.27
2089 4021 7.872138 TGACCCTGAGTGGATATTTTATCTTT 58.128 34.615 0.00 0.00 38.35 2.52
2090 4022 7.451731 TGACCCTGAGTGGATATTTTATCTT 57.548 36.000 0.00 0.00 38.35 2.40
2091 4023 7.639062 ATGACCCTGAGTGGATATTTTATCT 57.361 36.000 0.00 0.00 38.35 1.98
2092 4024 9.793259 TTTATGACCCTGAGTGGATATTTTATC 57.207 33.333 0.00 0.00 38.35 1.75
2094 4026 9.983024 TTTTTATGACCCTGAGTGGATATTTTA 57.017 29.630 0.00 0.00 38.35 1.52
2095 4027 8.893563 TTTTTATGACCCTGAGTGGATATTTT 57.106 30.769 0.00 0.00 38.35 1.82
2096 4028 8.336235 TCTTTTTATGACCCTGAGTGGATATTT 58.664 33.333 0.00 0.00 38.35 1.40
2097 4029 7.872138 TCTTTTTATGACCCTGAGTGGATATT 58.128 34.615 0.00 0.00 38.35 1.28
2098 4030 7.451731 TCTTTTTATGACCCTGAGTGGATAT 57.548 36.000 0.00 0.00 38.35 1.63
2099 4031 6.884472 TCTTTTTATGACCCTGAGTGGATA 57.116 37.500 0.00 0.00 38.35 2.59
2100 4032 5.779241 TCTTTTTATGACCCTGAGTGGAT 57.221 39.130 0.00 0.00 38.35 3.41
2108 4040 7.342026 GGTAAATGGACATCTTTTTATGACCCT 59.658 37.037 0.00 0.00 39.87 4.34
2141 4073 8.396272 AGCTTTGAAAACAGACACTACATATT 57.604 30.769 0.00 0.00 0.00 1.28
2144 4076 5.822519 TGAGCTTTGAAAACAGACACTACAT 59.177 36.000 0.00 0.00 0.00 2.29
2147 4079 5.182487 TGTGAGCTTTGAAAACAGACACTA 58.818 37.500 0.00 0.00 0.00 2.74
2180 4112 4.961438 AACACATGCTCCCTCAAATTTT 57.039 36.364 0.00 0.00 0.00 1.82
2182 4114 6.610075 AAATAACACATGCTCCCTCAAATT 57.390 33.333 0.00 0.00 0.00 1.82
2183 4115 6.610075 AAAATAACACATGCTCCCTCAAAT 57.390 33.333 0.00 0.00 0.00 2.32
2216 4148 7.232127 AGACGTCGGGATAATCCTTATTTTCTA 59.768 37.037 10.46 0.00 36.57 2.10
2232 4164 2.097036 ACATTGATGTAGACGTCGGGA 58.903 47.619 10.46 0.00 39.68 5.14
2237 4169 6.371809 AAAACAACACATTGATGTAGACGT 57.628 33.333 0.00 0.00 39.39 4.34
2266 4198 6.549736 GCCACTCCATATTTTGTTACCCTATT 59.450 38.462 0.00 0.00 0.00 1.73
2285 4217 6.711194 GGTTTCTATTATAAAGGAGGCCACTC 59.289 42.308 5.01 0.00 43.20 3.51
2293 4225 6.221850 TCCCCCAGGTTTCTATTATAAAGGA 58.778 40.000 0.00 0.00 0.00 3.36
2311 4244 1.566703 TCAGTTGTTCAGTTTCCCCCA 59.433 47.619 0.00 0.00 0.00 4.96
2315 4248 3.312697 GGTGTCTCAGTTGTTCAGTTTCC 59.687 47.826 0.00 0.00 0.00 3.13
2340 4274 3.319755 GTTTGATTAGGTTGTCGTCGGA 58.680 45.455 0.00 0.00 0.00 4.55
2400 4339 0.520404 CGTTGCTGATGCTCTTGCTT 59.480 50.000 0.00 0.00 40.48 3.91
2464 4405 5.454736 GCACAAGCAATTAACTAAATGGC 57.545 39.130 0.00 0.00 43.90 4.40
2549 4490 1.066787 GCCAGCGGAGAGAACTAAAGT 60.067 52.381 0.00 0.00 0.00 2.66
2604 4546 8.451908 ACTTGCTTTGAATGAGTACTAACTTT 57.548 30.769 0.00 0.00 35.56 2.66
2666 4676 5.833082 TCTGTAGACTATTCAGAATTCGGC 58.167 41.667 0.00 0.00 35.65 5.54
2700 4710 3.944015 GTCTAGCGTCTACCTTGAACCTA 59.056 47.826 0.00 0.00 0.00 3.08
2709 4719 5.850128 CGTAATATTGTGTCTAGCGTCTACC 59.150 44.000 0.00 0.00 0.00 3.18
2720 4730 9.365311 CGTTTCAATAATCCGTAATATTGTGTC 57.635 33.333 0.00 0.00 39.44 3.67
2730 4740 6.594547 TCCAACAATCGTTTCAATAATCCGTA 59.405 34.615 0.00 0.00 31.13 4.02
2732 4742 5.874831 TCCAACAATCGTTTCAATAATCCG 58.125 37.500 0.00 0.00 31.13 4.18
2734 4744 7.257722 ACCATCCAACAATCGTTTCAATAATC 58.742 34.615 0.00 0.00 31.13 1.75
2735 4745 7.169158 ACCATCCAACAATCGTTTCAATAAT 57.831 32.000 0.00 0.00 31.13 1.28
2740 4750 3.551863 GCAACCATCCAACAATCGTTTCA 60.552 43.478 0.00 0.00 31.13 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.