Multiple sequence alignment - TraesCS6D01G318800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G318800 chr6D 100.000 2709 0 0 2383 5091 427089608 427092316 0.000000e+00 5003.0
1 TraesCS6D01G318800 chr6D 100.000 2183 0 0 1 2183 427087226 427089408 0.000000e+00 4032.0
2 TraesCS6D01G318800 chr6D 91.275 149 12 1 1914 2061 427088999 427089147 8.640000e-48 202.0
3 TraesCS6D01G318800 chr6D 91.275 149 12 1 1774 1922 427089139 427089286 8.640000e-48 202.0
4 TraesCS6D01G318800 chr6D 87.879 165 19 1 4520 4684 438321897 438321734 5.200000e-45 193.0
5 TraesCS6D01G318800 chr6D 86.471 170 20 3 4520 4687 433642706 433642538 3.130000e-42 183.0
6 TraesCS6D01G318800 chr6D 85.799 169 23 1 4520 4688 48457971 48458138 1.460000e-40 178.0
7 TraesCS6D01G318800 chr6B 88.562 2684 170 57 2420 5012 642916938 642919575 0.000000e+00 3129.0
8 TraesCS6D01G318800 chr6B 91.555 1563 102 24 1 1544 642914726 642916277 0.000000e+00 2128.0
9 TraesCS6D01G318800 chr6B 90.461 608 51 6 1578 2182 642916348 642916951 0.000000e+00 795.0
10 TraesCS6D01G318800 chr6B 86.550 171 18 4 1760 1926 642916666 642916835 3.130000e-42 183.0
11 TraesCS6D01G318800 chr6A 90.236 2202 134 44 1 2159 571794531 571796694 0.000000e+00 2800.0
12 TraesCS6D01G318800 chr6A 91.853 1964 104 27 2766 4702 571796987 571798921 0.000000e+00 2689.0
13 TraesCS6D01G318800 chr6A 93.818 275 13 1 2444 2718 571796705 571796975 1.320000e-110 411.0
14 TraesCS6D01G318800 chr6A 91.477 176 8 3 4767 4935 571798956 571799131 8.520000e-58 235.0
15 TraesCS6D01G318800 chr6A 89.873 158 12 3 1766 1922 571796440 571796594 3.110000e-47 200.0
16 TraesCS6D01G318800 chr3D 88.415 164 18 1 4521 4684 566956752 566956914 4.020000e-46 196.0
17 TraesCS6D01G318800 chr2D 83.838 198 32 0 1015 1212 151325830 151326027 6.730000e-44 189.0
18 TraesCS6D01G318800 chr4D 87.117 163 20 1 4522 4684 334164552 334164391 3.130000e-42 183.0
19 TraesCS6D01G318800 chr2B 83.333 198 33 0 1015 1212 209436851 209437048 3.130000e-42 183.0
20 TraesCS6D01G318800 chr2A 83.333 198 33 0 1015 1212 150124638 150124441 3.130000e-42 183.0
21 TraesCS6D01G318800 chr7D 85.965 171 23 1 4517 4687 397555082 397554913 1.130000e-41 182.0
22 TraesCS6D01G318800 chr3A 85.632 174 24 1 4511 4684 238686199 238686371 1.130000e-41 182.0
23 TraesCS6D01G318800 chr1A 82.412 199 33 2 1015 1212 548995802 548995605 6.780000e-39 172.0
24 TraesCS6D01G318800 chr7A 80.597 201 33 4 1015 1212 465791438 465791635 3.180000e-32 150.0
25 TraesCS6D01G318800 chr1D 89.583 48 3 1 113 160 356339108 356339153 5.500000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G318800 chr6D 427087226 427092316 5090 False 2359.75 5003 95.6375 1 5091 4 chr6D.!!$F2 5090
1 TraesCS6D01G318800 chr6B 642914726 642919575 4849 False 1558.75 3129 89.2820 1 5012 4 chr6B.!!$F1 5011
2 TraesCS6D01G318800 chr6A 571794531 571799131 4600 False 1267.00 2800 91.4514 1 4935 5 chr6A.!!$F1 4934

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
818 822 0.102481 ACTACCGCGCAAGATACCAG 59.898 55.0 8.75 0.0 43.02 4.00 F
1579 1626 0.510359 GTCGAATGAGATGCCGATGC 59.490 55.0 0.00 0.0 33.47 3.91 F
2760 2878 0.240145 GGGACAAAAGTTAGTGGCGC 59.760 55.0 0.00 0.0 0.00 6.53 F
3490 3662 0.036294 CGTCCTCTTCCAAGTTCCCC 60.036 60.0 0.00 0.0 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1786 1872 1.065418 CGGAGGCTCCCAACAACTATT 60.065 52.381 27.36 0.0 31.13 1.73 R
3470 3642 0.036294 GGGAACTTGGAAGAGGACGG 60.036 60.000 0.00 0.0 0.00 4.79 R
3769 3950 0.039180 TGAGGCTGTAGGTCGGAGAA 59.961 55.000 0.00 0.0 39.69 2.87 R
5065 5280 0.108585 AGGAGCTTCTTTGCCGTTCA 59.891 50.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
110 111 8.183830 TCATCATTTTGAAAATTATTCGTGGC 57.816 30.769 0.00 0.00 0.00 5.01
199 202 8.871686 AAAGCTAGTCGATTTCAAAACAAATT 57.128 26.923 0.00 0.00 0.00 1.82
303 306 8.071122 TGAATTCCGAAATTGTTTGTGAATTC 57.929 30.769 18.11 18.11 40.32 2.17
305 308 6.820470 TTCCGAAATTGTTTGTGAATTCAC 57.180 33.333 28.10 28.10 46.59 3.18
565 568 4.443315 CCTGGAAGCTTCACAAAACCAATT 60.443 41.667 27.02 0.00 0.00 2.32
683 686 1.402259 CTTCTACGCGATCTGACCACT 59.598 52.381 15.93 0.00 0.00 4.00
703 706 1.183549 GGTCACTCCCACTGATACGT 58.816 55.000 0.00 0.00 0.00 3.57
704 707 1.135083 GGTCACTCCCACTGATACGTG 60.135 57.143 0.00 0.00 34.71 4.49
726 729 3.164269 CCACCATCCCTCCTCCCG 61.164 72.222 0.00 0.00 0.00 5.14
818 822 0.102481 ACTACCGCGCAAGATACCAG 59.898 55.000 8.75 0.00 43.02 4.00
838 842 1.530771 CCTGCCCTTCATCCCTCTG 59.469 63.158 0.00 0.00 0.00 3.35
949 955 2.203938 TCCTCCAGTCCACCACCC 60.204 66.667 0.00 0.00 0.00 4.61
950 956 2.203998 CCTCCAGTCCACCACCCT 60.204 66.667 0.00 0.00 0.00 4.34
1230 1261 4.862823 CGTCCCTCCCTCCCTCCC 62.863 77.778 0.00 0.00 0.00 4.30
1236 1267 2.610859 TCCCTCCCTCCCTGCAAC 60.611 66.667 0.00 0.00 0.00 4.17
1237 1268 2.612115 CCCTCCCTCCCTGCAACT 60.612 66.667 0.00 0.00 0.00 3.16
1238 1269 2.673523 CCTCCCTCCCTGCAACTG 59.326 66.667 0.00 0.00 0.00 3.16
1264 1295 1.289530 TCCTTCTCCTTCCTCTCCTCC 59.710 57.143 0.00 0.00 0.00 4.30
1393 1433 5.102313 CGTTTGGTTGAGCTCTTTCTTTTT 58.898 37.500 16.19 0.00 0.00 1.94
1423 1463 3.399330 GCGATTAATTCCTTCCGGATCA 58.601 45.455 4.15 0.00 39.58 2.92
1431 1471 3.543680 TCCTTCCGGATCAAGTGATTC 57.456 47.619 4.15 0.00 34.37 2.52
1471 1511 2.503765 TGGATTGAGCCGTAGATTTCCA 59.496 45.455 0.00 0.00 0.00 3.53
1480 1520 3.292460 CCGTAGATTTCCACTCCTCTCT 58.708 50.000 0.00 0.00 0.00 3.10
1508 1550 7.416817 GTTTTGCTATGGTTTGCTTTGATTTT 58.583 30.769 0.00 0.00 0.00 1.82
1510 1552 5.237048 TGCTATGGTTTGCTTTGATTTTCC 58.763 37.500 0.00 0.00 0.00 3.13
1544 1590 3.439857 TTCTCCCTTCAATGGTTCCTG 57.560 47.619 0.00 0.00 0.00 3.86
1570 1617 1.408702 TGCGGATGATGTCGAATGAGA 59.591 47.619 0.00 0.00 0.00 3.27
1579 1626 0.510359 GTCGAATGAGATGCCGATGC 59.490 55.000 0.00 0.00 33.47 3.91
1627 1710 3.123790 CCACACGCACATCATTACGTAAA 59.876 43.478 12.81 0.00 36.91 2.01
1628 1711 4.322934 CACACGCACATCATTACGTAAAG 58.677 43.478 12.81 8.26 36.91 1.85
1629 1712 4.090786 CACACGCACATCATTACGTAAAGA 59.909 41.667 14.90 14.90 36.91 2.52
1701 1785 2.192664 TGCGTATTGCTTCTTTCCCA 57.807 45.000 0.00 0.00 46.63 4.37
1729 1813 4.875561 AGTGAGGAGGTCTGTAAAGTTC 57.124 45.455 0.00 0.00 0.00 3.01
1734 1818 3.325135 AGGAGGTCTGTAAAGTTCTGTGG 59.675 47.826 0.00 0.00 0.00 4.17
1768 1854 8.335532 TCATGAAGTTAAATCTTCCACGAAAT 57.664 30.769 0.00 0.00 41.96 2.17
1786 1872 2.099652 ATTGCCGCTATAGCCTCGCA 62.100 55.000 19.00 19.26 37.91 5.10
1805 1891 2.369394 CAATAGTTGTTGGGAGCCTCC 58.631 52.381 0.73 0.73 35.23 4.30
1901 1987 2.100584 CAGAAATCCTCTCTCCTGACCG 59.899 54.545 0.00 0.00 29.07 4.79
1912 1998 2.704065 TCTCCTGACCGGAAAAGTTTCT 59.296 45.455 9.46 0.00 42.53 2.52
1916 2002 1.946768 TGACCGGAAAAGTTTCTGCTG 59.053 47.619 9.46 0.00 41.21 4.41
1947 2033 3.565214 TTGTTGGGAGCCTCCGCA 61.565 61.111 4.29 1.01 37.43 5.69
1952 2038 1.558167 TTGGGAGCCTCCGCACAATA 61.558 55.000 4.29 0.00 37.43 1.90
1964 2050 1.599071 CGCACAATACTATGGCCACAG 59.401 52.381 10.21 10.21 0.00 3.66
1965 2051 2.643551 GCACAATACTATGGCCACAGT 58.356 47.619 22.55 22.55 0.00 3.55
1989 2075 2.767505 GAAATGCTCCGAATATCCCGT 58.232 47.619 0.00 0.00 0.00 5.28
2019 2105 6.093495 CGGTCCAAAGTTCAGCAATAATCTAA 59.907 38.462 0.00 0.00 0.00 2.10
2102 2190 1.611491 GCTATAGCTGCGGAGAGAACT 59.389 52.381 17.75 0.00 38.21 3.01
2177 2267 5.393569 CGAGGAGATTTGCTCTTACTTGAGA 60.394 44.000 3.28 0.00 43.43 3.27
2182 2272 8.200792 GGAGATTTGCTCTTACTTGAGAGAATA 58.799 37.037 6.11 0.00 44.78 1.75
2404 2494 5.864628 GGGTGTCTCTTGTGTTATTCTTC 57.135 43.478 0.00 0.00 0.00 2.87
2405 2495 5.552178 GGGTGTCTCTTGTGTTATTCTTCT 58.448 41.667 0.00 0.00 0.00 2.85
2406 2496 5.998363 GGGTGTCTCTTGTGTTATTCTTCTT 59.002 40.000 0.00 0.00 0.00 2.52
2407 2497 6.073003 GGGTGTCTCTTGTGTTATTCTTCTTG 60.073 42.308 0.00 0.00 0.00 3.02
2408 2498 6.706270 GGTGTCTCTTGTGTTATTCTTCTTGA 59.294 38.462 0.00 0.00 0.00 3.02
2409 2499 7.389053 GGTGTCTCTTGTGTTATTCTTCTTGAT 59.611 37.037 0.00 0.00 0.00 2.57
2410 2500 8.778358 GTGTCTCTTGTGTTATTCTTCTTGATT 58.222 33.333 0.00 0.00 0.00 2.57
2411 2501 9.342308 TGTCTCTTGTGTTATTCTTCTTGATTT 57.658 29.630 0.00 0.00 0.00 2.17
2412 2502 9.818796 GTCTCTTGTGTTATTCTTCTTGATTTC 57.181 33.333 0.00 0.00 0.00 2.17
2413 2503 9.559732 TCTCTTGTGTTATTCTTCTTGATTTCA 57.440 29.630 0.00 0.00 0.00 2.69
2414 2504 9.823098 CTCTTGTGTTATTCTTCTTGATTTCAG 57.177 33.333 0.00 0.00 0.00 3.02
2415 2505 9.342308 TCTTGTGTTATTCTTCTTGATTTCAGT 57.658 29.630 0.00 0.00 0.00 3.41
2416 2506 9.956720 CTTGTGTTATTCTTCTTGATTTCAGTT 57.043 29.630 0.00 0.00 0.00 3.16
2429 2519 9.231297 TCTTGATTTCAGTTTATTACTTGAGGG 57.769 33.333 0.00 0.00 33.85 4.30
2430 2520 9.231297 CTTGATTTCAGTTTATTACTTGAGGGA 57.769 33.333 0.00 0.00 33.85 4.20
2431 2521 9.581289 TTGATTTCAGTTTATTACTTGAGGGAA 57.419 29.630 0.00 0.00 33.85 3.97
2432 2522 9.753674 TGATTTCAGTTTATTACTTGAGGGAAT 57.246 29.630 0.00 0.00 33.85 3.01
2434 2524 9.753674 ATTTCAGTTTATTACTTGAGGGAATGA 57.246 29.630 0.00 0.00 33.85 2.57
2435 2525 8.792830 TTCAGTTTATTACTTGAGGGAATGAG 57.207 34.615 0.00 0.00 33.85 2.90
2471 2561 5.062809 GCTATTCTTCTTGGTCTCTGTTTCG 59.937 44.000 0.00 0.00 0.00 3.46
2504 2594 4.753107 CGTGTCTTTTTAGGCAAGTAAGGA 59.247 41.667 0.00 0.00 0.00 3.36
2507 2597 5.183140 TGTCTTTTTAGGCAAGTAAGGATGC 59.817 40.000 0.00 0.00 41.82 3.91
2521 2611 2.102578 AGGATGCAATGTACCAAAGCC 58.897 47.619 0.00 0.00 0.00 4.35
2608 2699 1.868469 TTGCCACAATCTTGCAAAGC 58.132 45.000 0.00 0.00 45.70 3.51
2609 2700 0.751452 TGCCACAATCTTGCAAAGCA 59.249 45.000 0.00 0.00 45.70 3.91
2718 2836 4.452455 GGAAGAGTTCATGCGAGAGAAAAA 59.548 41.667 0.00 0.00 0.00 1.94
2732 2850 3.819337 AGAGAAAAAGGCGGGTAAAGAAC 59.181 43.478 0.00 0.00 0.00 3.01
2733 2851 3.558033 AGAAAAAGGCGGGTAAAGAACA 58.442 40.909 0.00 0.00 0.00 3.18
2737 2855 6.265876 AGAAAAAGGCGGGTAAAGAACAAATA 59.734 34.615 0.00 0.00 0.00 1.40
2760 2878 0.240145 GGGACAAAAGTTAGTGGCGC 59.760 55.000 0.00 0.00 0.00 6.53
2798 2924 5.783967 TGCAGTGCATGATCGAATATTTTCG 60.784 40.000 15.37 11.51 44.09 3.46
2904 3032 2.564504 AGCATGCTCTTTCCTTTTTCCC 59.435 45.455 16.30 0.00 0.00 3.97
2942 3070 3.498397 AGCCTTTATGAAAGTGTGTCACG 59.502 43.478 0.00 0.00 39.64 4.35
2964 3092 4.575076 GCATTTGGCATTGCGACA 57.425 50.000 1.91 0.00 43.97 4.35
2965 3093 2.072490 GCATTTGGCATTGCGACAC 58.928 52.632 1.91 0.00 43.97 3.67
3007 3145 1.202758 TGAATCTTCCTTGGCACGTGT 60.203 47.619 18.38 0.00 0.00 4.49
3040 3178 4.222810 TCTCCTTCCGTCATCAGAAATCAA 59.777 41.667 0.00 0.00 0.00 2.57
3047 3185 4.330074 CCGTCATCAGAAATCAACTGGTAC 59.670 45.833 0.00 0.00 36.22 3.34
3053 3191 4.282449 TCAGAAATCAACTGGTACGGAAGA 59.718 41.667 0.00 0.00 38.67 2.87
3061 3199 3.494332 ACTGGTACGGAAGAAGTACACT 58.506 45.455 8.48 0.00 44.45 3.55
3062 3200 3.255149 ACTGGTACGGAAGAAGTACACTG 59.745 47.826 8.48 5.19 44.45 3.66
3063 3201 3.225104 TGGTACGGAAGAAGTACACTGT 58.775 45.455 8.48 0.00 44.45 3.55
3064 3202 4.397420 TGGTACGGAAGAAGTACACTGTA 58.603 43.478 8.48 0.00 44.45 2.74
3065 3203 4.216257 TGGTACGGAAGAAGTACACTGTAC 59.784 45.833 10.90 10.90 44.45 2.90
3066 3204 4.216257 GGTACGGAAGAAGTACACTGTACA 59.784 45.833 19.34 0.00 44.45 2.90
3067 3205 4.234530 ACGGAAGAAGTACACTGTACAC 57.765 45.455 19.34 13.08 0.00 2.90
3076 3214 5.060662 AGTACACTGTACACACTATGCAG 57.939 43.478 19.34 0.00 0.00 4.41
3080 3218 4.282449 ACACTGTACACACTATGCAGGTAA 59.718 41.667 0.00 0.00 0.00 2.85
3084 3222 7.710907 CACTGTACACACTATGCAGGTAATAAT 59.289 37.037 0.00 0.00 0.00 1.28
3114 3252 7.512992 ACTAGGCTTGTATTTGCATCTAATCT 58.487 34.615 0.00 0.00 0.00 2.40
3121 3259 7.700322 TGTATTTGCATCTAATCTCGACTTC 57.300 36.000 0.00 0.00 0.00 3.01
3205 3343 7.537596 TCCCACACAAATGAGATGTAAAAAT 57.462 32.000 0.00 0.00 0.00 1.82
3382 3554 1.144057 CACCTCCTCGCATACCACC 59.856 63.158 0.00 0.00 0.00 4.61
3390 3562 4.910585 GCATACCACCCTCGGCGG 62.911 72.222 7.21 0.00 0.00 6.13
3391 3563 4.910585 CATACCACCCTCGGCGGC 62.911 72.222 7.21 0.00 0.00 6.53
3490 3662 0.036294 CGTCCTCTTCCAAGTTCCCC 60.036 60.000 0.00 0.00 0.00 4.81
3631 3809 2.676471 GTCCAGCCGCCATGGTTT 60.676 61.111 14.67 0.00 41.21 3.27
3811 3992 0.459489 CTCCTTCGAGCTCCTTCAGG 59.541 60.000 8.47 8.36 0.00 3.86
3816 3997 0.251832 TCGAGCTCCTTCAGGGTCTT 60.252 55.000 8.47 0.00 36.25 3.01
3857 4038 3.082579 GCGGGCTCTTCGAGGATGT 62.083 63.158 0.00 0.00 0.00 3.06
3866 4047 4.838152 CGAGGATGTGCACCCCGG 62.838 72.222 15.69 9.32 0.00 5.73
3894 4075 4.796231 GACGTGCTCGCCGGTGAT 62.796 66.667 19.93 2.25 41.18 3.06
4091 4272 2.675056 GCAGGCGCAGTGAACTGAG 61.675 63.158 14.58 11.95 46.59 3.35
4106 4287 2.544721 ACTGAGCTCATCAAGGGAGAA 58.455 47.619 18.63 0.00 37.52 2.87
4130 4311 0.032130 GATCGATGGAAGCTACCGCA 59.968 55.000 0.54 0.00 39.10 5.69
4351 4538 8.756927 AGACAGTTGAATTATCAGAATCAGAGA 58.243 33.333 0.00 0.00 36.78 3.10
4352 4539 9.545105 GACAGTTGAATTATCAGAATCAGAGAT 57.455 33.333 0.00 0.00 36.78 2.75
4495 4682 8.398665 ACACTTGCTAGTTTCTTTTTAACAGAG 58.601 33.333 0.00 0.00 30.26 3.35
4496 4683 8.612619 CACTTGCTAGTTTCTTTTTAACAGAGA 58.387 33.333 0.00 0.00 30.26 3.10
4534 4721 4.161001 TCCTGTTTTATACTCCCTCCGTTC 59.839 45.833 0.00 0.00 0.00 3.95
4535 4722 4.439968 CTGTTTTATACTCCCTCCGTTCC 58.560 47.826 0.00 0.00 0.00 3.62
4707 4913 7.067496 AGAACAGTATCCTCTTCTTGTTTGA 57.933 36.000 0.00 0.00 0.00 2.69
4712 4918 4.906747 ATCCTCTTCTTGTTTGAGAGCT 57.093 40.909 0.00 0.00 0.00 4.09
4716 4922 4.504689 CCTCTTCTTGTTTGAGAGCTCCTT 60.505 45.833 10.93 0.00 0.00 3.36
4718 4924 5.059833 TCTTCTTGTTTGAGAGCTCCTTTC 58.940 41.667 10.93 1.86 0.00 2.62
4731 4937 2.605580 GCTCCTTTCGAAACAGGCTTTG 60.606 50.000 6.47 0.00 0.00 2.77
4745 4951 1.982612 GCTTTGGCCTCGCTTTAAAG 58.017 50.000 11.02 11.02 32.19 1.85
4866 5075 7.496529 TTGTTCTGATTTAAGTTCCAGTCAG 57.503 36.000 0.00 0.00 35.58 3.51
4893 5106 3.000819 TCACCCCGATCAACGCCT 61.001 61.111 0.00 0.00 41.07 5.52
4895 5108 1.219664 CACCCCGATCAACGCCTAA 59.780 57.895 0.00 0.00 41.07 2.69
4986 5201 6.439375 TCTTTGTACAGGACCACACACTATAT 59.561 38.462 0.00 0.00 0.00 0.86
4987 5202 7.616542 TCTTTGTACAGGACCACACACTATATA 59.383 37.037 0.00 0.00 0.00 0.86
4988 5203 6.954487 TGTACAGGACCACACACTATATAG 57.046 41.667 8.27 8.27 0.00 1.31
4992 5207 7.762588 ACAGGACCACACACTATATAGATAC 57.237 40.000 16.79 0.00 0.00 2.24
5016 5231 5.543507 AAAAACTGCATAACCATCACCAA 57.456 34.783 0.00 0.00 0.00 3.67
5017 5232 4.789012 AAACTGCATAACCATCACCAAG 57.211 40.909 0.00 0.00 0.00 3.61
5018 5233 3.439857 ACTGCATAACCATCACCAAGT 57.560 42.857 0.00 0.00 0.00 3.16
5019 5234 4.568072 ACTGCATAACCATCACCAAGTA 57.432 40.909 0.00 0.00 0.00 2.24
5020 5235 5.116084 ACTGCATAACCATCACCAAGTAT 57.884 39.130 0.00 0.00 0.00 2.12
5021 5236 6.247229 ACTGCATAACCATCACCAAGTATA 57.753 37.500 0.00 0.00 0.00 1.47
5022 5237 6.841601 ACTGCATAACCATCACCAAGTATAT 58.158 36.000 0.00 0.00 0.00 0.86
5023 5238 7.973402 ACTGCATAACCATCACCAAGTATATA 58.027 34.615 0.00 0.00 0.00 0.86
5024 5239 8.436778 ACTGCATAACCATCACCAAGTATATAA 58.563 33.333 0.00 0.00 0.00 0.98
5025 5240 8.846943 TGCATAACCATCACCAAGTATATAAG 57.153 34.615 0.00 0.00 0.00 1.73
5026 5241 7.390440 TGCATAACCATCACCAAGTATATAAGC 59.610 37.037 0.00 0.00 0.00 3.09
5027 5242 7.607991 GCATAACCATCACCAAGTATATAAGCT 59.392 37.037 0.00 0.00 0.00 3.74
5028 5243 9.507329 CATAACCATCACCAAGTATATAAGCTT 57.493 33.333 3.48 3.48 0.00 3.74
5030 5245 7.807977 ACCATCACCAAGTATATAAGCTTTG 57.192 36.000 3.20 0.00 0.00 2.77
5031 5246 6.263168 ACCATCACCAAGTATATAAGCTTTGC 59.737 38.462 3.20 0.00 0.00 3.68
5032 5247 6.488006 CCATCACCAAGTATATAAGCTTTGCT 59.512 38.462 3.20 0.00 42.56 3.91
5048 5263 2.956469 GCTTTTGCTTTGACACGCA 58.044 47.368 0.00 0.00 43.35 5.24
5049 5264 1.490621 GCTTTTGCTTTGACACGCAT 58.509 45.000 0.00 0.00 43.35 4.73
5050 5265 2.660490 GCTTTTGCTTTGACACGCATA 58.340 42.857 0.00 0.00 43.35 3.14
5051 5266 3.244976 GCTTTTGCTTTGACACGCATAT 58.755 40.909 0.00 0.00 43.35 1.78
5052 5267 3.674753 GCTTTTGCTTTGACACGCATATT 59.325 39.130 0.00 0.00 43.35 1.28
5053 5268 4.856487 GCTTTTGCTTTGACACGCATATTA 59.144 37.500 0.00 0.00 43.35 0.98
5054 5269 5.220024 GCTTTTGCTTTGACACGCATATTAC 60.220 40.000 0.00 0.00 43.35 1.89
5055 5270 5.621197 TTTGCTTTGACACGCATATTACT 57.379 34.783 0.00 0.00 35.85 2.24
5056 5271 4.857871 TGCTTTGACACGCATATTACTC 57.142 40.909 0.00 0.00 0.00 2.59
5057 5272 4.503910 TGCTTTGACACGCATATTACTCT 58.496 39.130 0.00 0.00 0.00 3.24
5058 5273 4.329801 TGCTTTGACACGCATATTACTCTG 59.670 41.667 0.00 0.00 0.00 3.35
5059 5274 4.330074 GCTTTGACACGCATATTACTCTGT 59.670 41.667 0.00 0.00 0.00 3.41
5060 5275 5.518847 GCTTTGACACGCATATTACTCTGTA 59.481 40.000 0.00 0.00 0.00 2.74
5061 5276 6.291849 GCTTTGACACGCATATTACTCTGTAG 60.292 42.308 0.00 0.00 0.00 2.74
5062 5277 5.830000 TGACACGCATATTACTCTGTAGT 57.170 39.130 0.00 0.00 39.91 2.73
5063 5278 6.203808 TGACACGCATATTACTCTGTAGTT 57.796 37.500 0.00 0.00 37.15 2.24
5064 5279 7.324354 TGACACGCATATTACTCTGTAGTTA 57.676 36.000 0.00 0.00 37.15 2.24
5065 5280 7.937649 TGACACGCATATTACTCTGTAGTTAT 58.062 34.615 0.00 0.00 37.15 1.89
5066 5281 7.860872 TGACACGCATATTACTCTGTAGTTATG 59.139 37.037 0.00 0.00 37.15 1.90
5067 5282 7.937649 ACACGCATATTACTCTGTAGTTATGA 58.062 34.615 10.90 0.00 37.15 2.15
5068 5283 8.410912 ACACGCATATTACTCTGTAGTTATGAA 58.589 33.333 10.90 0.00 37.15 2.57
5069 5284 8.691727 CACGCATATTACTCTGTAGTTATGAAC 58.308 37.037 10.90 0.00 37.15 3.18
5070 5285 7.590322 ACGCATATTACTCTGTAGTTATGAACG 59.410 37.037 10.90 0.00 37.15 3.95
5071 5286 7.060748 CGCATATTACTCTGTAGTTATGAACGG 59.939 40.741 10.90 0.00 37.15 4.44
5072 5287 7.148787 GCATATTACTCTGTAGTTATGAACGGC 60.149 40.741 10.90 0.00 37.15 5.68
5073 5288 5.648178 TTACTCTGTAGTTATGAACGGCA 57.352 39.130 0.00 0.00 37.15 5.69
5074 5289 4.530710 ACTCTGTAGTTATGAACGGCAA 57.469 40.909 0.00 0.00 36.23 4.52
5075 5290 4.890088 ACTCTGTAGTTATGAACGGCAAA 58.110 39.130 0.00 0.00 36.23 3.68
5076 5291 4.929808 ACTCTGTAGTTATGAACGGCAAAG 59.070 41.667 0.00 0.00 36.23 2.77
5077 5292 5.142061 TCTGTAGTTATGAACGGCAAAGA 57.858 39.130 0.00 0.00 36.23 2.52
5078 5293 5.543714 TCTGTAGTTATGAACGGCAAAGAA 58.456 37.500 0.00 0.00 36.23 2.52
5079 5294 5.637810 TCTGTAGTTATGAACGGCAAAGAAG 59.362 40.000 0.00 0.00 36.23 2.85
5080 5295 3.831715 AGTTATGAACGGCAAAGAAGC 57.168 42.857 0.00 0.00 36.23 3.86
5081 5296 3.412386 AGTTATGAACGGCAAAGAAGCT 58.588 40.909 0.00 0.00 36.23 3.74
5082 5297 3.437049 AGTTATGAACGGCAAAGAAGCTC 59.563 43.478 0.00 0.00 36.23 4.09
5083 5298 1.168714 ATGAACGGCAAAGAAGCTCC 58.831 50.000 0.00 0.00 34.17 4.70
5084 5299 0.108585 TGAACGGCAAAGAAGCTCCT 59.891 50.000 0.00 0.00 34.17 3.69
5085 5300 1.346395 TGAACGGCAAAGAAGCTCCTA 59.654 47.619 0.00 0.00 34.17 2.94
5086 5301 2.003301 GAACGGCAAAGAAGCTCCTAG 58.997 52.381 0.00 0.00 34.17 3.02
5087 5302 0.391793 ACGGCAAAGAAGCTCCTAGC 60.392 55.000 0.00 0.00 42.84 3.42
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
273 276 9.534565 TCACAAACAATTTCGGAATTCATTAAA 57.465 25.926 7.93 4.84 33.25 1.52
542 545 2.031120 TGGTTTTGTGAAGCTTCCAGG 58.969 47.619 23.42 0.00 0.00 4.45
544 547 4.751767 AATTGGTTTTGTGAAGCTTCCA 57.248 36.364 23.42 17.13 0.00 3.53
683 686 1.182667 CGTATCAGTGGGAGTGACCA 58.817 55.000 0.00 0.00 41.20 4.02
703 706 2.286121 GAGGGATGGTGGGACCCA 60.286 66.667 9.95 9.95 45.43 4.51
704 707 3.097162 GGAGGGATGGTGGGACCC 61.097 72.222 2.45 2.45 43.55 4.46
707 710 2.372688 GGAGGAGGGATGGTGGGA 59.627 66.667 0.00 0.00 0.00 4.37
818 822 3.424105 AGGGATGAAGGGCAGGGC 61.424 66.667 0.00 0.00 0.00 5.19
867 871 1.426041 CGGGTGGCGATTTTACCTCG 61.426 60.000 0.00 0.00 39.11 4.63
965 974 1.203013 TCTCTTCCCGTCAAGAGTCCA 60.203 52.381 16.29 0.42 46.65 4.02
1236 1267 2.039613 AGGAAGGAGAAGGAGTTTGCAG 59.960 50.000 0.00 0.00 0.00 4.41
1237 1268 2.039084 GAGGAAGGAGAAGGAGTTTGCA 59.961 50.000 0.00 0.00 0.00 4.08
1238 1269 2.304470 AGAGGAAGGAGAAGGAGTTTGC 59.696 50.000 0.00 0.00 0.00 3.68
1241 1272 2.385417 AGGAGAGGAAGGAGAAGGAGTT 59.615 50.000 0.00 0.00 0.00 3.01
1242 1273 2.007636 AGGAGAGGAAGGAGAAGGAGT 58.992 52.381 0.00 0.00 0.00 3.85
1244 1275 1.289530 GGAGGAGAGGAAGGAGAAGGA 59.710 57.143 0.00 0.00 0.00 3.36
1264 1295 1.082756 GCAAAACAGCACCGAGACG 60.083 57.895 0.00 0.00 0.00 4.18
1316 1350 3.922240 AGAATTAATGTTCGTACGTGCGT 59.078 39.130 24.94 8.58 33.36 5.24
1319 1353 5.019498 GGCAAGAATTAATGTTCGTACGTG 58.981 41.667 16.05 2.22 33.36 4.49
1327 1365 3.758554 ACAGCTCGGCAAGAATTAATGTT 59.241 39.130 0.00 0.00 0.00 2.71
1393 1433 1.935199 GGAATTAATCGCCGAACCGAA 59.065 47.619 0.00 0.00 41.01 4.30
1423 1463 6.267699 CCACCCTAAAAAGAAAGGAATCACTT 59.732 38.462 0.00 0.00 34.58 3.16
1431 1471 4.672899 TCCATCCACCCTAAAAAGAAAGG 58.327 43.478 0.00 0.00 0.00 3.11
1471 1511 1.439543 AGCAAAACCCAGAGAGGAGT 58.560 50.000 0.00 0.00 41.22 3.85
1480 1520 2.324541 AGCAAACCATAGCAAAACCCA 58.675 42.857 0.00 0.00 0.00 4.51
1544 1590 1.650912 GACATCATCCGCACCATGC 59.349 57.895 0.00 0.00 40.69 4.06
1585 1668 2.676471 CCCCTTTGCCTTGTCCCG 60.676 66.667 0.00 0.00 0.00 5.14
1627 1710 1.340017 ACAGGCACACAAACACACTCT 60.340 47.619 0.00 0.00 0.00 3.24
1628 1711 1.094785 ACAGGCACACAAACACACTC 58.905 50.000 0.00 0.00 0.00 3.51
1629 1712 1.544724 AACAGGCACACAAACACACT 58.455 45.000 0.00 0.00 0.00 3.55
1701 1785 9.047947 ACTTTACAGACCTCCTCACTTAATAAT 57.952 33.333 0.00 0.00 0.00 1.28
1744 1830 8.853345 CAATTTCGTGGAAGATTTAACTTCATG 58.147 33.333 0.00 0.00 45.39 3.07
1762 1848 1.202651 AGGCTATAGCGGCAATTTCGT 60.203 47.619 18.30 0.00 43.26 3.85
1768 1854 2.029073 GCGAGGCTATAGCGGCAA 59.971 61.111 21.83 0.00 43.26 4.52
1786 1872 1.065418 CGGAGGCTCCCAACAACTATT 60.065 52.381 27.36 0.00 31.13 1.73
1867 1953 7.565398 AGAGAGGATTTCTGTAGGTTATTGCTA 59.435 37.037 0.00 0.00 35.87 3.49
1901 1987 2.229062 GGGCTACAGCAGAAACTTTTCC 59.771 50.000 3.24 0.00 44.36 3.13
1912 1998 1.068588 CAACTATAGCGGGCTACAGCA 59.931 52.381 5.92 0.00 44.36 4.41
1916 2002 2.480845 CCAACAACTATAGCGGGCTAC 58.519 52.381 1.91 0.00 0.00 3.58
1947 2033 2.741878 GCGACTGTGGCCATAGTATTGT 60.742 50.000 32.38 12.95 32.75 2.71
1952 2038 1.884075 TTCGCGACTGTGGCCATAGT 61.884 55.000 32.75 32.75 35.40 2.12
1989 2075 1.673920 GCTGAACTTTGGACCGTTCAA 59.326 47.619 12.66 0.00 46.05 2.69
2019 2105 2.763448 CGGTCAGGAGAGAGGATTTCTT 59.237 50.000 0.00 0.00 35.87 2.52
2102 2190 2.098443 GGGAAAAATGATTTAGCGGCGA 59.902 45.455 12.98 0.00 0.00 5.54
2153 2243 4.748892 TCAAGTAAGAGCAAATCTCCTCG 58.251 43.478 0.00 0.00 42.90 4.63
2382 2472 5.552178 AGAAGAATAACACAAGAGACACCC 58.448 41.667 0.00 0.00 0.00 4.61
2383 2473 6.706270 TCAAGAAGAATAACACAAGAGACACC 59.294 38.462 0.00 0.00 0.00 4.16
2384 2474 7.715265 TCAAGAAGAATAACACAAGAGACAC 57.285 36.000 0.00 0.00 0.00 3.67
2385 2475 8.908786 AATCAAGAAGAATAACACAAGAGACA 57.091 30.769 0.00 0.00 0.00 3.41
2386 2476 9.818796 GAAATCAAGAAGAATAACACAAGAGAC 57.181 33.333 0.00 0.00 0.00 3.36
2387 2477 9.559732 TGAAATCAAGAAGAATAACACAAGAGA 57.440 29.630 0.00 0.00 0.00 3.10
2388 2478 9.823098 CTGAAATCAAGAAGAATAACACAAGAG 57.177 33.333 0.00 0.00 0.00 2.85
2389 2479 9.342308 ACTGAAATCAAGAAGAATAACACAAGA 57.658 29.630 0.00 0.00 0.00 3.02
2390 2480 9.956720 AACTGAAATCAAGAAGAATAACACAAG 57.043 29.630 0.00 0.00 0.00 3.16
2403 2493 9.231297 CCCTCAAGTAATAAACTGAAATCAAGA 57.769 33.333 0.00 0.00 38.88 3.02
2404 2494 9.231297 TCCCTCAAGTAATAAACTGAAATCAAG 57.769 33.333 0.00 0.00 38.88 3.02
2405 2495 9.581289 TTCCCTCAAGTAATAAACTGAAATCAA 57.419 29.630 0.00 0.00 38.88 2.57
2406 2496 9.753674 ATTCCCTCAAGTAATAAACTGAAATCA 57.246 29.630 0.00 0.00 38.88 2.57
2408 2498 9.753674 TCATTCCCTCAAGTAATAAACTGAAAT 57.246 29.630 0.00 0.00 38.88 2.17
2409 2499 9.231297 CTCATTCCCTCAAGTAATAAACTGAAA 57.769 33.333 0.00 0.00 38.88 2.69
2410 2500 7.829211 CCTCATTCCCTCAAGTAATAAACTGAA 59.171 37.037 0.00 0.00 38.88 3.02
2411 2501 7.338710 CCTCATTCCCTCAAGTAATAAACTGA 58.661 38.462 0.00 0.00 38.88 3.41
2412 2502 6.543831 CCCTCATTCCCTCAAGTAATAAACTG 59.456 42.308 0.00 0.00 38.88 3.16
2413 2503 6.353951 CCCCTCATTCCCTCAAGTAATAAACT 60.354 42.308 0.00 0.00 41.49 2.66
2414 2504 5.828328 CCCCTCATTCCCTCAAGTAATAAAC 59.172 44.000 0.00 0.00 0.00 2.01
2415 2505 5.103686 CCCCCTCATTCCCTCAAGTAATAAA 60.104 44.000 0.00 0.00 0.00 1.40
2416 2506 4.415512 CCCCCTCATTCCCTCAAGTAATAA 59.584 45.833 0.00 0.00 0.00 1.40
2417 2507 3.980698 CCCCCTCATTCCCTCAAGTAATA 59.019 47.826 0.00 0.00 0.00 0.98
2418 2508 2.785857 CCCCCTCATTCCCTCAAGTAAT 59.214 50.000 0.00 0.00 0.00 1.89
2419 2509 2.205342 CCCCCTCATTCCCTCAAGTAA 58.795 52.381 0.00 0.00 0.00 2.24
2420 2510 1.893315 CCCCCTCATTCCCTCAAGTA 58.107 55.000 0.00 0.00 0.00 2.24
2421 2511 2.715295 CCCCCTCATTCCCTCAAGT 58.285 57.895 0.00 0.00 0.00 3.16
2471 2561 5.907945 GCCTAAAAAGACACGAGAAAGAAAC 59.092 40.000 0.00 0.00 0.00 2.78
2504 2594 1.194218 GGGGCTTTGGTACATTGCAT 58.806 50.000 0.00 0.00 39.30 3.96
2507 2597 2.024414 GCTAGGGGCTTTGGTACATTG 58.976 52.381 0.00 0.00 36.48 2.82
2565 2656 3.139077 GTTTGGACGGTGAACAGATTCT 58.861 45.455 0.00 0.00 35.69 2.40
2718 2836 4.401202 CCATTATTTGTTCTTTACCCGCCT 59.599 41.667 0.00 0.00 0.00 5.52
2732 2850 7.096551 CCACTAACTTTTGTCCCCATTATTTG 58.903 38.462 0.00 0.00 0.00 2.32
2733 2851 6.295632 GCCACTAACTTTTGTCCCCATTATTT 60.296 38.462 0.00 0.00 0.00 1.40
2737 2855 2.897326 GCCACTAACTTTTGTCCCCATT 59.103 45.455 0.00 0.00 0.00 3.16
2798 2924 4.258702 TGACAGTCTTAGCTCCTTTGAC 57.741 45.455 1.31 0.00 0.00 3.18
2910 3038 5.010922 ACTTTCATAAAGGCTGATTTGCACA 59.989 36.000 4.56 0.00 42.82 4.57
2915 3043 6.265196 TGACACACTTTCATAAAGGCTGATTT 59.735 34.615 4.56 0.00 42.82 2.17
3007 3145 5.414789 TGACGGAAGGAGAACAATATTGA 57.585 39.130 22.16 0.00 0.00 2.57
3040 3178 3.255149 CAGTGTACTTCTTCCGTACCAGT 59.745 47.826 0.00 0.00 37.11 4.00
3047 3185 3.979495 GTGTGTACAGTGTACTTCTTCCG 59.021 47.826 28.78 0.00 0.00 4.30
3053 3191 5.462530 TGCATAGTGTGTACAGTGTACTT 57.537 39.130 28.78 16.43 0.00 2.24
3084 3222 8.195165 AGATGCAAATACAAGCCTAGTCTATA 57.805 34.615 0.00 0.00 0.00 1.31
3102 3240 3.490933 CGGGAAGTCGAGATTAGATGCAA 60.491 47.826 0.00 0.00 0.00 4.08
3104 3242 2.293677 TCGGGAAGTCGAGATTAGATGC 59.706 50.000 0.00 0.00 34.82 3.91
3121 3259 2.288273 GGGACAAGATAATCGACTCGGG 60.288 54.545 0.00 0.00 0.00 5.14
3209 3347 7.443879 TGAGTGTATGACAATTGTGTGTGTATT 59.556 33.333 17.58 0.00 38.41 1.89
3210 3348 6.934083 TGAGTGTATGACAATTGTGTGTGTAT 59.066 34.615 17.58 3.47 38.41 2.29
3367 3539 1.742768 GAGGGTGGTATGCGAGGAG 59.257 63.158 0.00 0.00 0.00 3.69
3470 3642 0.036294 GGGAACTTGGAAGAGGACGG 60.036 60.000 0.00 0.00 0.00 4.79
3769 3950 0.039180 TGAGGCTGTAGGTCGGAGAA 59.961 55.000 0.00 0.00 39.69 2.87
3801 3982 1.219393 CCGAAGACCCTGAAGGAGC 59.781 63.158 0.00 0.00 39.89 4.70
3803 3984 1.612442 CCCCGAAGACCCTGAAGGA 60.612 63.158 0.00 0.00 39.89 3.36
3809 3990 1.383248 CCATCTCCCCGAAGACCCT 60.383 63.158 0.00 0.00 0.00 4.34
3811 3992 2.317149 CTGCCATCTCCCCGAAGACC 62.317 65.000 0.00 0.00 0.00 3.85
3867 4048 4.363990 AGCACGTCCCGCTCTGTG 62.364 66.667 0.00 0.00 33.35 3.66
4091 4272 4.213564 TCTCTTTTCTCCCTTGATGAGC 57.786 45.455 0.00 0.00 0.00 4.26
4092 4273 5.049167 CGATCTCTTTTCTCCCTTGATGAG 58.951 45.833 0.00 0.00 0.00 2.90
4106 4287 3.243569 CGGTAGCTTCCATCGATCTCTTT 60.244 47.826 10.29 0.00 0.00 2.52
4130 4311 8.525290 AATGGAAATCTGACGAAATTCCTATT 57.475 30.769 4.67 1.28 38.78 1.73
4524 4711 8.731591 AATACTTATATTTAGGAACGGAGGGA 57.268 34.615 0.00 0.00 0.00 4.20
4578 4765 6.874297 TCAAACTACGTTTATGTACATCCG 57.126 37.500 12.68 15.06 33.70 4.18
4612 4799 9.752961 TGAACTATATACGCAGCAAAATAAGTA 57.247 29.630 0.00 0.00 0.00 2.24
4707 4913 1.609320 GCCTGTTTCGAAAGGAGCTCT 60.609 52.381 18.21 0.00 35.40 4.09
4712 4918 1.953686 CCAAAGCCTGTTTCGAAAGGA 59.046 47.619 18.21 4.92 35.40 3.36
4745 4951 5.473039 AGCTGTTTGGTCATTTGCTTTATC 58.527 37.500 0.00 0.00 0.00 1.75
4866 5075 2.169769 TGATCGGGGTGAGTATTGGAAC 59.830 50.000 0.00 0.00 0.00 3.62
4893 5106 6.188407 AGATAGTAGCACTTCCTGTCTGTTA 58.812 40.000 0.00 0.00 0.00 2.41
4895 5108 4.605183 AGATAGTAGCACTTCCTGTCTGT 58.395 43.478 0.00 0.00 0.00 3.41
4955 5170 6.829298 TGTGTGGTCCTGTACAAAGAAAAATA 59.171 34.615 0.00 0.00 0.00 1.40
4971 5186 9.826574 TTTTTGTATCTATATAGTGTGTGGTCC 57.173 33.333 9.58 0.00 0.00 4.46
5024 5239 2.931969 GTGTCAAAGCAAAAGCAAAGCT 59.068 40.909 0.00 0.00 42.56 3.74
5025 5240 2.285198 CGTGTCAAAGCAAAAGCAAAGC 60.285 45.455 0.00 0.00 0.00 3.51
5026 5241 2.285198 GCGTGTCAAAGCAAAAGCAAAG 60.285 45.455 0.00 0.00 0.00 2.77
5027 5242 1.658095 GCGTGTCAAAGCAAAAGCAAA 59.342 42.857 0.00 0.00 0.00 3.68
5028 5243 1.276415 GCGTGTCAAAGCAAAAGCAA 58.724 45.000 0.00 0.00 0.00 3.91
5029 5244 0.172127 TGCGTGTCAAAGCAAAAGCA 59.828 45.000 2.14 0.00 37.88 3.91
5030 5245 1.490621 ATGCGTGTCAAAGCAAAAGC 58.509 45.000 8.12 0.00 44.13 3.51
5031 5246 6.086222 AGTAATATGCGTGTCAAAGCAAAAG 58.914 36.000 8.12 0.00 44.13 2.27
5032 5247 6.007936 AGTAATATGCGTGTCAAAGCAAAA 57.992 33.333 8.12 1.63 44.13 2.44
5033 5248 5.411361 AGAGTAATATGCGTGTCAAAGCAAA 59.589 36.000 8.12 0.00 44.13 3.68
5034 5249 4.935205 AGAGTAATATGCGTGTCAAAGCAA 59.065 37.500 8.12 0.42 44.13 3.91
5035 5250 4.329801 CAGAGTAATATGCGTGTCAAAGCA 59.670 41.667 6.69 6.69 45.04 3.91
5036 5251 4.330074 ACAGAGTAATATGCGTGTCAAAGC 59.670 41.667 0.00 0.00 0.00 3.51
5037 5252 6.752351 ACTACAGAGTAATATGCGTGTCAAAG 59.248 38.462 0.00 0.00 32.65 2.77
5038 5253 6.627243 ACTACAGAGTAATATGCGTGTCAAA 58.373 36.000 0.00 0.00 32.65 2.69
5039 5254 6.203808 ACTACAGAGTAATATGCGTGTCAA 57.796 37.500 0.00 0.00 32.65 3.18
5040 5255 5.830000 ACTACAGAGTAATATGCGTGTCA 57.170 39.130 0.00 0.00 32.65 3.58
5041 5256 8.074370 TCATAACTACAGAGTAATATGCGTGTC 58.926 37.037 0.00 0.00 33.58 3.67
5042 5257 7.937649 TCATAACTACAGAGTAATATGCGTGT 58.062 34.615 0.00 0.00 33.58 4.49
5043 5258 8.691727 GTTCATAACTACAGAGTAATATGCGTG 58.308 37.037 0.00 0.00 33.58 5.34
5044 5259 7.590322 CGTTCATAACTACAGAGTAATATGCGT 59.410 37.037 0.00 0.00 33.58 5.24
5045 5260 7.060748 CCGTTCATAACTACAGAGTAATATGCG 59.939 40.741 0.00 0.00 33.58 4.73
5046 5261 7.148787 GCCGTTCATAACTACAGAGTAATATGC 60.149 40.741 0.00 0.00 33.58 3.14
5047 5262 7.865889 TGCCGTTCATAACTACAGAGTAATATG 59.134 37.037 0.00 0.00 33.58 1.78
5048 5263 7.948357 TGCCGTTCATAACTACAGAGTAATAT 58.052 34.615 0.00 0.00 33.58 1.28
5049 5264 7.337480 TGCCGTTCATAACTACAGAGTAATA 57.663 36.000 0.00 0.00 33.58 0.98
5050 5265 6.216801 TGCCGTTCATAACTACAGAGTAAT 57.783 37.500 0.00 0.00 33.58 1.89
5051 5266 5.648178 TGCCGTTCATAACTACAGAGTAA 57.352 39.130 0.00 0.00 33.58 2.24
5052 5267 5.648178 TTGCCGTTCATAACTACAGAGTA 57.352 39.130 0.00 0.00 33.58 2.59
5053 5268 4.530710 TTGCCGTTCATAACTACAGAGT 57.469 40.909 0.00 0.00 37.59 3.24
5054 5269 5.168569 TCTTTGCCGTTCATAACTACAGAG 58.831 41.667 0.00 0.00 0.00 3.35
5055 5270 5.142061 TCTTTGCCGTTCATAACTACAGA 57.858 39.130 0.00 0.00 0.00 3.41
5056 5271 5.671329 GCTTCTTTGCCGTTCATAACTACAG 60.671 44.000 0.00 0.00 0.00 2.74
5057 5272 4.153475 GCTTCTTTGCCGTTCATAACTACA 59.847 41.667 0.00 0.00 0.00 2.74
5058 5273 4.392138 AGCTTCTTTGCCGTTCATAACTAC 59.608 41.667 0.00 0.00 0.00 2.73
5059 5274 4.575885 AGCTTCTTTGCCGTTCATAACTA 58.424 39.130 0.00 0.00 0.00 2.24
5060 5275 3.412386 AGCTTCTTTGCCGTTCATAACT 58.588 40.909 0.00 0.00 0.00 2.24
5061 5276 3.426292 GGAGCTTCTTTGCCGTTCATAAC 60.426 47.826 0.00 0.00 0.00 1.89
5062 5277 2.747446 GGAGCTTCTTTGCCGTTCATAA 59.253 45.455 0.00 0.00 0.00 1.90
5063 5278 2.027192 AGGAGCTTCTTTGCCGTTCATA 60.027 45.455 0.00 0.00 0.00 2.15
5064 5279 1.168714 GGAGCTTCTTTGCCGTTCAT 58.831 50.000 0.00 0.00 0.00 2.57
5065 5280 0.108585 AGGAGCTTCTTTGCCGTTCA 59.891 50.000 0.00 0.00 0.00 3.18
5066 5281 2.003301 CTAGGAGCTTCTTTGCCGTTC 58.997 52.381 0.00 0.00 0.00 3.95
5067 5282 1.946283 GCTAGGAGCTTCTTTGCCGTT 60.946 52.381 0.00 0.00 38.45 4.44
5068 5283 0.391793 GCTAGGAGCTTCTTTGCCGT 60.392 55.000 0.00 0.00 38.45 5.68
5069 5284 2.388347 GCTAGGAGCTTCTTTGCCG 58.612 57.895 0.00 0.00 38.45 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.