Multiple sequence alignment - TraesCS6D01G317300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G317300 chr6D 100.000 4479 0 0 1 4479 426074700 426079178 0.000000e+00 8272.0
1 TraesCS6D01G317300 chr6D 100.000 2672 0 0 4740 7411 426079439 426082110 0.000000e+00 4935.0
2 TraesCS6D01G317300 chr6D 75.886 875 114 50 1039 1843 426068385 426069232 2.540000e-94 357.0
3 TraesCS6D01G317300 chr6D 96.970 33 1 0 5600 5632 426093190 426093222 1.000000e-03 56.5
4 TraesCS6D01G317300 chr6B 92.113 4514 252 50 1 4479 641301831 641306275 0.000000e+00 6268.0
5 TraesCS6D01G317300 chr6B 92.482 1104 31 23 4763 5824 641306633 641307726 0.000000e+00 1531.0
6 TraesCS6D01G317300 chr6B 92.322 1081 56 8 5823 6876 641307761 641308841 0.000000e+00 1511.0
7 TraesCS6D01G317300 chr6B 77.647 850 125 35 1039 1843 641294726 641295555 2.440000e-124 457.0
8 TraesCS6D01G317300 chr6A 92.538 4248 231 45 5 4193 570939087 570943307 0.000000e+00 6010.0
9 TraesCS6D01G317300 chr6A 94.732 1101 31 8 4740 5824 570943428 570944517 0.000000e+00 1687.0
10 TraesCS6D01G317300 chr6A 93.918 970 53 6 5823 6786 570944545 570945514 0.000000e+00 1459.0
11 TraesCS6D01G317300 chr6A 85.744 477 36 7 6405 6852 570979395 570979868 6.730000e-130 475.0
12 TraesCS6D01G317300 chr6A 82.026 306 32 10 7016 7302 570979992 570980293 9.610000e-59 239.0
13 TraesCS6D01G317300 chr6A 76.404 356 63 15 1493 1843 570933144 570933483 9.890000e-39 172.0
14 TraesCS6D01G317300 chr6A 94.048 84 5 0 4396 4479 570943310 570943393 2.170000e-25 128.0
15 TraesCS6D01G317300 chr6A 100.000 33 0 0 5600 5632 570992813 570992845 2.230000e-05 62.1
16 TraesCS6D01G317300 chr4B 89.873 158 11 4 3636 3788 438375181 438375338 1.630000e-46 198.0
17 TraesCS6D01G317300 chr4B 88.344 163 13 5 3633 3790 146469213 146469374 2.730000e-44 191.0
18 TraesCS6D01G317300 chr4A 89.744 156 11 4 3633 3783 460230646 460230801 2.110000e-45 195.0
19 TraesCS6D01G317300 chr7B 89.610 154 13 3 3636 3786 78552580 78552427 7.590000e-45 193.0
20 TraesCS6D01G317300 chr2D 89.677 155 11 4 3636 3785 79056167 79056321 7.590000e-45 193.0
21 TraesCS6D01G317300 chr2D 80.469 128 22 3 69 195 448203068 448202943 2.200000e-15 95.3
22 TraesCS6D01G317300 chr5D 89.032 155 14 3 3632 3783 528717274 528717428 9.820000e-44 189.0
23 TraesCS6D01G317300 chr5D 100.000 28 0 0 6988 7015 134780555 134780582 1.300000e-02 52.8
24 TraesCS6D01G317300 chr5B 89.032 155 14 3 3632 3783 665744465 665744619 9.820000e-44 189.0
25 TraesCS6D01G317300 chr5B 73.536 427 80 21 64 479 383034954 383034550 1.680000e-26 132.0
26 TraesCS6D01G317300 chr5B 100.000 28 0 0 449 476 361007806 361007833 1.300000e-02 52.8
27 TraesCS6D01G317300 chr2B 73.077 546 114 20 133 653 158305038 158304501 5.950000e-36 163.0
28 TraesCS6D01G317300 chr3D 76.111 180 33 8 477 653 555147429 555147257 1.320000e-12 86.1
29 TraesCS6D01G317300 chr3D 93.023 43 1 2 6975 7015 51439506 51439548 2.230000e-05 62.1
30 TraesCS6D01G317300 chr1D 71.032 252 70 2 228 476 365062963 365063214 2.890000e-04 58.4
31 TraesCS6D01G317300 chr3A 96.875 32 1 0 4294 4325 632376104 632376073 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G317300 chr6D 426074700 426082110 7410 False 6603.500000 8272 100.000000 1 7411 2 chr6D.!!$F3 7410
1 TraesCS6D01G317300 chr6D 426068385 426069232 847 False 357.000000 357 75.886000 1039 1843 1 chr6D.!!$F1 804
2 TraesCS6D01G317300 chr6B 641301831 641308841 7010 False 3103.333333 6268 92.305667 1 6876 3 chr6B.!!$F2 6875
3 TraesCS6D01G317300 chr6B 641294726 641295555 829 False 457.000000 457 77.647000 1039 1843 1 chr6B.!!$F1 804
4 TraesCS6D01G317300 chr6A 570939087 570945514 6427 False 2321.000000 6010 93.809000 5 6786 4 chr6A.!!$F3 6781
5 TraesCS6D01G317300 chr6A 570979395 570980293 898 False 357.000000 475 83.885000 6405 7302 2 chr6A.!!$F4 897

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
360 362 0.321034 GGGCGAGGTTACGGTTTCTT 60.321 55.000 0.00 0.0 0.00 2.52 F
782 812 0.391130 TTGTCTTCTTCATCGGCGGG 60.391 55.000 7.21 0.0 0.00 6.13 F
1373 1483 1.128200 TTGTGCCCTGTGTGTAGTCT 58.872 50.000 0.00 0.0 0.00 3.24 F
1675 1803 1.541588 GACCAAGGGTGATGCAGAAAC 59.458 52.381 0.00 0.0 35.25 2.78 F
3439 3570 0.825010 AGCTGTCAGTTGGCCCAAAG 60.825 55.000 0.00 0.0 0.00 2.77 F
3579 3710 1.075542 TTGCTATCGTGGTTGAAGCG 58.924 50.000 0.00 0.0 35.95 4.68 F
4332 4470 1.133976 AGACATTGGGCTCATACTGGC 60.134 52.381 0.00 0.0 0.00 4.85 F
5671 5901 1.267261 CACTCTCCGCCGAGGTAATAG 59.733 57.143 2.12 0.0 41.99 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1194 1250 0.798776 GAGTGAATTGCGGACCACAG 59.201 55.000 6.18 0.00 32.35 3.66 R
2356 2486 1.302511 CAGCCGTACCTGCAACCTT 60.303 57.895 4.99 0.00 0.00 3.50 R
2662 2792 1.760029 TCGTAATAGCCCTGCATGTCA 59.240 47.619 0.00 0.00 0.00 3.58 R
3442 3573 0.689623 ACTTCAGCCCAGGAACTCTG 59.310 55.000 0.00 0.00 43.00 3.35 R
4318 4456 0.469917 GCTAAGCCAGTATGAGCCCA 59.530 55.000 0.00 0.00 39.69 5.36 R
5335 5564 3.100817 CAAAGTTCTCAACGTGCAACTG 58.899 45.455 0.00 0.00 36.23 3.16 R
5707 5937 1.736645 GCACATGCCTTGCAAGCTG 60.737 57.895 21.43 18.15 43.62 4.24 R
7344 7714 0.035458 AAGGACGCTCAAACTGGGAG 59.965 55.000 0.00 0.00 35.47 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 6.700352 ACAAGTTCCATTGTAATCAAATGGG 58.300 36.000 13.68 2.23 41.53 4.00
35 36 5.937975 AGTTCCATTGTAATCAAATGGGG 57.062 39.130 13.68 0.96 37.11 4.96
71 72 4.323477 ACGCTGCGGTAGGGCAAA 62.323 61.111 26.95 0.00 43.39 3.68
77 78 1.192146 TGCGGTAGGGCAAACTCTCT 61.192 55.000 0.00 0.00 40.59 3.10
85 86 1.270907 GGCAAACTCTCTCCTCTGGA 58.729 55.000 0.00 0.00 0.00 3.86
95 96 0.324285 CTCCTCTGGAGCTTTGCTGT 59.676 55.000 0.27 0.00 43.29 4.40
115 116 2.315925 TGAGTCCATGAATTCGCCTC 57.684 50.000 0.04 2.46 0.00 4.70
119 120 1.529244 CCATGAATTCGCCTCCCCC 60.529 63.158 0.04 0.00 0.00 5.40
133 134 2.523657 CCCCCTACCTACCGCTCC 60.524 72.222 0.00 0.00 0.00 4.70
173 174 3.682292 GATCCCGGTGCCTTCGCTT 62.682 63.158 0.00 0.00 35.36 4.68
174 175 3.268103 ATCCCGGTGCCTTCGCTTT 62.268 57.895 0.00 0.00 35.36 3.51
263 264 2.910688 TCTTCGAGTTTGCCTTCAGT 57.089 45.000 0.00 0.00 0.00 3.41
265 266 0.944386 TTCGAGTTTGCCTTCAGTGC 59.056 50.000 0.00 0.00 0.00 4.40
271 272 0.944386 TTTGCCTTCAGTGCTTCGAC 59.056 50.000 0.00 0.00 0.00 4.20
292 293 2.500098 CCCTCCTCGAGTTTGTCCATTA 59.500 50.000 12.31 0.00 0.00 1.90
293 294 3.430929 CCCTCCTCGAGTTTGTCCATTAG 60.431 52.174 12.31 0.00 0.00 1.73
294 295 3.447586 CCTCCTCGAGTTTGTCCATTAGA 59.552 47.826 12.31 0.00 0.00 2.10
295 296 4.425520 CTCCTCGAGTTTGTCCATTAGAC 58.574 47.826 12.31 0.00 46.51 2.59
341 343 6.185114 AGATTATCACCATCTCCTTGGAAG 57.815 41.667 0.00 0.00 39.25 3.46
352 354 0.392595 CCTTGGAAGGGCGAGGTTAC 60.393 60.000 0.00 0.00 42.66 2.50
360 362 0.321034 GGGCGAGGTTACGGTTTCTT 60.321 55.000 0.00 0.00 0.00 2.52
403 405 5.163561 TGAGGTTTGGTGTCAATTTCTTCAC 60.164 40.000 0.00 0.00 32.28 3.18
406 408 6.048509 GGTTTGGTGTCAATTTCTTCACATT 58.951 36.000 0.00 0.00 32.28 2.71
410 412 9.474920 TTTGGTGTCAATTTCTTCACATTTATC 57.525 29.630 0.00 0.00 32.28 1.75
420 422 7.948034 TTCTTCACATTTATCCGGGTTTAAT 57.052 32.000 0.00 0.00 0.00 1.40
423 425 7.777910 TCTTCACATTTATCCGGGTTTAATGAT 59.222 33.333 22.14 9.14 32.15 2.45
428 430 3.830744 ATCCGGGTTTAATGATGACGA 57.169 42.857 0.00 0.00 0.00 4.20
456 458 2.550277 TCAGGATGCTGGTCCTTAGA 57.450 50.000 14.84 0.00 46.45 2.10
460 462 0.833287 GATGCTGGTCCTTAGAGGCA 59.167 55.000 0.00 0.00 34.61 4.75
475 487 1.001378 GAGGCACATGCACGAAAACTT 60.001 47.619 6.15 0.00 44.36 2.66
490 502 5.524646 ACGAAAACTTATCGACAAGGTCAAA 59.475 36.000 8.55 0.00 42.76 2.69
527 539 2.341977 CGTCGATAACAACGCGTCA 58.658 52.632 14.44 0.00 31.48 4.35
548 561 1.201647 ACGGTTCATTCTGACGACGAT 59.798 47.619 0.00 0.00 0.00 3.73
569 582 1.145803 GTAGTGGTTGTTCGCTGGTC 58.854 55.000 0.00 0.00 0.00 4.02
622 635 6.767524 TGTTTGAGGTGATTTGTACTTTGT 57.232 33.333 0.00 0.00 0.00 2.83
681 711 0.605589 AGTTTCCGAGAGAGGCTGTG 59.394 55.000 0.00 0.00 0.00 3.66
774 804 1.412710 ACTCGCACCTTGTCTTCTTCA 59.587 47.619 0.00 0.00 0.00 3.02
780 810 1.002366 CCTTGTCTTCTTCATCGGCG 58.998 55.000 0.00 0.00 0.00 6.46
781 811 1.002366 CTTGTCTTCTTCATCGGCGG 58.998 55.000 7.21 0.00 0.00 6.13
782 812 0.391130 TTGTCTTCTTCATCGGCGGG 60.391 55.000 7.21 0.00 0.00 6.13
783 813 1.254975 TGTCTTCTTCATCGGCGGGA 61.255 55.000 7.21 1.97 0.00 5.14
866 902 1.573829 GCTCGCGTCAATTCCACCAA 61.574 55.000 5.77 0.00 0.00 3.67
979 1015 4.787280 AGCGGACTCCTCCCCTGG 62.787 72.222 0.00 0.00 31.93 4.45
980 1016 4.779733 GCGGACTCCTCCCCTGGA 62.780 72.222 0.00 0.00 31.93 3.86
981 1017 2.760385 CGGACTCCTCCCCTGGAC 60.760 72.222 0.00 0.00 31.93 4.02
982 1018 2.365768 GGACTCCTCCCCTGGACC 60.366 72.222 0.00 0.00 31.94 4.46
988 1024 4.101448 CTCCCCTGGACCGGCAAG 62.101 72.222 0.00 0.00 0.00 4.01
1106 1150 2.106857 CCTCTAGGTCGGTCCAGTAGAT 59.893 54.545 0.00 0.00 39.02 1.98
1373 1483 1.128200 TTGTGCCCTGTGTGTAGTCT 58.872 50.000 0.00 0.00 0.00 3.24
1380 1490 2.289072 CCCTGTGTGTAGTCTGGAGTTG 60.289 54.545 0.00 0.00 0.00 3.16
1514 1628 2.172082 CCTTCTGGATGATCTGAAGCCA 59.828 50.000 16.97 0.00 39.68 4.75
1551 1670 3.118261 GGGCTAGTGATTGGATTGAGTGA 60.118 47.826 0.00 0.00 0.00 3.41
1629 1751 7.847078 CAGTGCAATTGTTAACTGAATTTTGTG 59.153 33.333 22.88 0.00 42.09 3.33
1650 1778 3.243535 TGTGAACTCCATGATAGCTAGCG 60.244 47.826 9.55 0.00 0.00 4.26
1675 1803 1.541588 GACCAAGGGTGATGCAGAAAC 59.458 52.381 0.00 0.00 35.25 2.78
1689 1817 3.987868 TGCAGAAACAGAGTTAGTTAGCG 59.012 43.478 0.00 0.00 0.00 4.26
1758 1886 9.819267 ATCCTTGTATAGTTCTTACTGCTTTAC 57.181 33.333 0.00 0.00 35.78 2.01
2051 2180 4.702131 GGGACTGTCATTAGTCAGCAAAAT 59.298 41.667 10.38 0.00 46.97 1.82
2126 2255 2.009774 GGTAGGTTATGCTGCTGTGTG 58.990 52.381 0.00 0.00 0.00 3.82
2275 2405 8.902806 TGTTTGTTTCAAGTTATGTCTCTTGAT 58.097 29.630 8.13 0.00 45.77 2.57
2356 2486 2.370849 GGTTCACCAGGTCAGGAAAGTA 59.629 50.000 0.00 0.00 35.64 2.24
2471 2601 7.390440 TGGAGTAATCAATTTGATCGACACTTT 59.610 33.333 12.15 0.00 35.76 2.66
2538 2668 9.830975 TCGATTATTCTCCTCAATATGTTTCAA 57.169 29.630 0.00 0.00 0.00 2.69
2598 2728 7.466804 TGTTCCCTTATCATTCTGTTACCTTT 58.533 34.615 0.00 0.00 0.00 3.11
2610 2740 7.900782 TTCTGTTACCTTTTGTGCTATAGTC 57.099 36.000 0.84 0.00 0.00 2.59
2662 2792 4.829064 TTAACATGCTGCGTCTCTTTTT 57.171 36.364 0.00 0.00 0.00 1.94
2763 2893 3.727726 AGCAGTACCAAACAAATTTGCC 58.272 40.909 18.12 0.00 43.38 4.52
2978 3108 7.341256 AGGTGATTCATGCATTCTAATGTTTCT 59.659 33.333 0.00 0.00 38.65 2.52
3040 3170 3.691609 AGGCACTGCTTTAATGCTCTTAC 59.308 43.478 13.80 3.23 39.38 2.34
3046 3176 7.201644 GCACTGCTTTAATGCTCTTACTCATAA 60.202 37.037 13.80 0.00 36.40 1.90
3097 3227 7.878477 TCAATTTCACTGTTACTAAGGTACG 57.122 36.000 0.00 0.00 0.00 3.67
3309 3439 1.481871 ATGGCAAGAGAAGGCAATGG 58.518 50.000 0.00 0.00 45.03 3.16
3377 3508 5.685511 CAGTTGGTTACTTATGTTGTTGTGC 59.314 40.000 0.00 0.00 33.85 4.57
3439 3570 0.825010 AGCTGTCAGTTGGCCCAAAG 60.825 55.000 0.00 0.00 0.00 2.77
3442 3573 1.815003 CTGTCAGTTGGCCCAAAGATC 59.185 52.381 0.00 0.00 0.00 2.75
3579 3710 1.075542 TTGCTATCGTGGTTGAAGCG 58.924 50.000 0.00 0.00 35.95 4.68
3584 3715 1.808411 ATCGTGGTTGAAGCGACATT 58.192 45.000 0.00 0.00 37.47 2.71
3702 3836 8.289440 TGAATCGGATGTATATACACGTTTTC 57.711 34.615 17.69 19.97 39.30 2.29
3726 3860 8.148807 TCGTGTTTTTATTCACTCATTTCAGA 57.851 30.769 0.00 0.00 33.07 3.27
3727 3861 8.783093 TCGTGTTTTTATTCACTCATTTCAGAT 58.217 29.630 0.00 0.00 33.07 2.90
3728 3862 8.843733 CGTGTTTTTATTCACTCATTTCAGATG 58.156 33.333 0.00 0.00 33.07 2.90
4009 4147 9.988815 AAATAAATACATGTGCCTTGTGTTTTA 57.011 25.926 9.11 12.45 38.69 1.52
4063 4201 2.333926 TGGTCTTAAGATGCAACGTCG 58.666 47.619 8.75 0.00 0.00 5.12
4193 4331 5.826737 TGGAAGATCGAAGGTACCTAAGTAG 59.173 44.000 16.67 5.31 0.00 2.57
4234 4372 4.695455 GCTGCACTTTCCTATGTTAACTGA 59.305 41.667 7.22 0.00 0.00 3.41
4235 4373 5.355350 GCTGCACTTTCCTATGTTAACTGAT 59.645 40.000 7.22 0.00 0.00 2.90
4236 4374 6.127897 GCTGCACTTTCCTATGTTAACTGATT 60.128 38.462 7.22 0.00 0.00 2.57
4237 4375 7.575720 GCTGCACTTTCCTATGTTAACTGATTT 60.576 37.037 7.22 0.00 0.00 2.17
4318 4456 9.028284 ACATCAAGGTTCAAAATATCAGACATT 57.972 29.630 0.00 0.00 0.00 2.71
4328 4466 7.229306 TCAAAATATCAGACATTGGGCTCATAC 59.771 37.037 0.00 0.00 0.00 2.39
4332 4470 1.133976 AGACATTGGGCTCATACTGGC 60.134 52.381 0.00 0.00 0.00 4.85
4361 4499 6.718454 CTGAAAGGAGTGTTATGACTGAAG 57.282 41.667 0.00 0.00 0.00 3.02
4374 4512 7.174426 TGTTATGACTGAAGTATCGACCGATAT 59.826 37.037 14.18 0.96 39.04 1.63
5027 5246 7.172532 ACGTAGAAAATGAAAACAGCTGTGATA 59.827 33.333 22.49 7.97 0.00 2.15
5042 5263 4.322349 GCTGTGATACTGAAGTCAAGACCT 60.322 45.833 0.00 0.00 0.00 3.85
5206 5435 8.834465 CATAAGCAGCTGAACTTTTAGTCATAT 58.166 33.333 20.43 0.00 0.00 1.78
5276 5505 4.100808 GCCTTCCTCAGTCAGATCATACTT 59.899 45.833 0.00 0.00 0.00 2.24
5282 5511 3.771479 TCAGTCAGATCATACTTGGCACT 59.229 43.478 0.00 0.00 0.00 4.40
5344 5573 8.700644 GGATTATAATACTAAGTCAGTTGCACG 58.299 37.037 0.00 0.00 38.80 5.34
5357 5586 2.097466 AGTTGCACGTTGAGAACTTTGG 59.903 45.455 0.00 0.00 0.00 3.28
5384 5613 4.739195 TGACCAACCGTTTTCTTTTTCTG 58.261 39.130 0.00 0.00 0.00 3.02
5463 5692 1.343069 GGAACACTCCTCAGGTCTGT 58.657 55.000 0.00 0.00 38.88 3.41
5511 5740 7.425606 CATTAGTTTTCTGTAACTGGCACTTT 58.574 34.615 0.00 0.00 38.72 2.66
5671 5901 1.267261 CACTCTCCGCCGAGGTAATAG 59.733 57.143 2.12 0.00 41.99 1.73
5707 5937 1.643880 CAAGGCGGCCATTTTTCATC 58.356 50.000 23.09 0.00 0.00 2.92
5712 5942 1.404583 GCGGCCATTTTTCATCAGCTT 60.405 47.619 2.24 0.00 0.00 3.74
5894 6187 9.911788 ATTGATATGAGAACCATTTACTTGAGT 57.088 29.630 0.00 0.00 36.71 3.41
5936 6229 3.265791 AGTGAATCTTCCATCGTGAAGC 58.734 45.455 7.07 0.00 41.23 3.86
6000 6293 1.670406 CTTCAGCTTGCTCGTGGCT 60.670 57.895 0.00 0.00 42.39 4.75
6406 6700 1.890876 TTGCATAAGGAGCAACACGT 58.109 45.000 0.00 0.00 46.13 4.49
6522 6816 6.038714 GGACAACTGACCAAAGATAATCATCC 59.961 42.308 0.00 0.00 0.00 3.51
6531 6825 5.475909 CCAAAGATAATCATCCCATGTGAGG 59.524 44.000 0.00 0.00 0.00 3.86
6556 6873 0.251354 GAACTCCAGGAGCATCAGCA 59.749 55.000 17.31 0.00 45.49 4.41
6611 6928 2.881111 ATGCTGCCTGATATGCATCT 57.119 45.000 0.19 0.00 41.60 2.90
6627 6945 2.805099 GCATCTGAAGAAGGAATAGGCG 59.195 50.000 0.00 0.00 0.00 5.52
6630 6951 5.788450 CATCTGAAGAAGGAATAGGCGTAT 58.212 41.667 0.00 0.00 0.00 3.06
6699 7020 6.435164 AGAGTTGGTTAATGCCTTAATGGAT 58.565 36.000 0.00 0.00 38.35 3.41
6789 7111 1.066502 TGGCATGTAAAGAGCAGCGTA 60.067 47.619 0.00 0.00 0.00 4.42
6796 7118 6.358030 GCATGTAAAGAGCAGCGTATTATTTG 59.642 38.462 0.00 0.00 0.00 2.32
6798 7120 3.971032 AAGAGCAGCGTATTATTTGCC 57.029 42.857 0.00 0.00 37.26 4.52
6828 7150 2.708861 ACAGTATGGAAGGTGGTCAACA 59.291 45.455 0.00 0.00 43.62 3.33
6829 7153 3.496160 ACAGTATGGAAGGTGGTCAACAC 60.496 47.826 0.00 0.00 45.79 3.32
6872 7196 4.573201 CGGTGAACTGTTGACCTAGAAAAA 59.427 41.667 23.46 0.00 0.00 1.94
6905 7229 6.683974 ACATGTATGTATTTGTGGAGAAGC 57.316 37.500 0.00 0.00 39.68 3.86
6906 7230 6.179756 ACATGTATGTATTTGTGGAGAAGCA 58.820 36.000 0.00 0.00 39.68 3.91
6907 7231 6.830324 ACATGTATGTATTTGTGGAGAAGCAT 59.170 34.615 0.00 0.00 39.68 3.79
6908 7232 6.682423 TGTATGTATTTGTGGAGAAGCATG 57.318 37.500 0.00 0.00 0.00 4.06
6909 7233 6.413892 TGTATGTATTTGTGGAGAAGCATGA 58.586 36.000 0.00 0.00 0.00 3.07
6910 7234 6.539826 TGTATGTATTTGTGGAGAAGCATGAG 59.460 38.462 0.00 0.00 0.00 2.90
6911 7235 3.691118 TGTATTTGTGGAGAAGCATGAGC 59.309 43.478 0.00 0.00 42.56 4.26
6912 7236 1.538047 TTTGTGGAGAAGCATGAGCC 58.462 50.000 0.00 0.00 43.56 4.70
6913 7237 0.694771 TTGTGGAGAAGCATGAGCCT 59.305 50.000 0.00 0.00 43.56 4.58
6914 7238 0.035725 TGTGGAGAAGCATGAGCCTG 60.036 55.000 0.00 0.00 43.56 4.85
6915 7239 0.035630 GTGGAGAAGCATGAGCCTGT 60.036 55.000 0.00 0.00 43.56 4.00
6925 7249 1.467734 CATGAGCCTGTGAGCTTTCAC 59.532 52.381 0.00 0.00 45.15 3.18
6928 7252 0.601311 AGCCTGTGAGCTTTCACGTC 60.601 55.000 2.07 0.00 41.41 4.34
6934 7258 0.976641 TGAGCTTTCACGTCCAGGAT 59.023 50.000 0.00 0.00 0.00 3.24
6935 7259 1.347707 TGAGCTTTCACGTCCAGGATT 59.652 47.619 0.00 0.00 0.00 3.01
6967 7291 8.108551 TCTAGATAAAGTCGACCCTTATAAGC 57.891 38.462 13.01 4.84 0.00 3.09
6968 7292 6.980416 AGATAAAGTCGACCCTTATAAGCT 57.020 37.500 13.01 6.86 0.00 3.74
6969 7293 6.750148 AGATAAAGTCGACCCTTATAAGCTG 58.250 40.000 13.01 3.13 0.00 4.24
6970 7294 2.892784 AGTCGACCCTTATAAGCTGC 57.107 50.000 13.01 0.00 0.00 5.25
6971 7295 1.413077 AGTCGACCCTTATAAGCTGCC 59.587 52.381 13.01 0.00 0.00 4.85
6986 7310 9.681062 TTATAAGCTGCCATTTAATATACTCCC 57.319 33.333 0.00 0.00 0.00 4.30
6988 7312 5.810095 AGCTGCCATTTAATATACTCCCTC 58.190 41.667 0.00 0.00 0.00 4.30
6989 7313 5.549619 AGCTGCCATTTAATATACTCCCTCT 59.450 40.000 0.00 0.00 0.00 3.69
6990 7314 6.730977 AGCTGCCATTTAATATACTCCCTCTA 59.269 38.462 0.00 0.00 0.00 2.43
7005 7329 7.475137 ACTCCCTCTATAGTGATCTAAATGC 57.525 40.000 3.34 0.00 0.00 3.56
7006 7330 7.245292 ACTCCCTCTATAGTGATCTAAATGCT 58.755 38.462 3.34 0.00 0.00 3.79
7007 7331 7.396055 ACTCCCTCTATAGTGATCTAAATGCTC 59.604 40.741 3.34 0.00 0.00 4.26
7008 7332 7.474445 TCCCTCTATAGTGATCTAAATGCTCT 58.526 38.462 3.34 0.00 0.00 4.09
7018 7342 8.884323 AGTGATCTAAATGCTCTTATATTGGGA 58.116 33.333 0.00 0.00 0.00 4.37
7019 7343 9.160496 GTGATCTAAATGCTCTTATATTGGGAG 57.840 37.037 0.00 0.00 0.00 4.30
7020 7344 8.884323 TGATCTAAATGCTCTTATATTGGGAGT 58.116 33.333 0.00 0.00 0.00 3.85
7039 7392 5.355350 GGGAGTATATTGCAATAGCCATGTC 59.645 44.000 22.76 13.08 41.13 3.06
7065 7418 7.551974 CACTCATGGAAGATATCAAACAGAACT 59.448 37.037 5.32 0.00 0.00 3.01
7067 7420 8.868522 TCATGGAAGATATCAAACAGAACTTT 57.131 30.769 5.32 0.00 0.00 2.66
7068 7421 9.300681 TCATGGAAGATATCAAACAGAACTTTT 57.699 29.630 5.32 0.00 0.00 2.27
7112 7465 6.017275 CAGCAGAATAAGGAATCAGATTCACC 60.017 42.308 22.23 8.82 41.03 4.02
7116 7469 3.659183 AAGGAATCAGATTCACCTGGG 57.341 47.619 22.23 0.00 41.03 4.45
7127 7480 5.127682 CAGATTCACCTGGGGGAAAATTAAG 59.872 44.000 8.47 0.00 36.25 1.85
7132 7485 2.233676 CCTGGGGGAAAATTAAGCACAC 59.766 50.000 0.00 0.00 33.58 3.82
7133 7486 2.896685 CTGGGGGAAAATTAAGCACACA 59.103 45.455 0.00 0.00 0.00 3.72
7149 7515 3.672808 CACACAAGATTCTTCAGGAGCT 58.327 45.455 0.00 0.00 0.00 4.09
7159 7525 9.612066 AAGATTCTTCAGGAGCTAAAATTCTAG 57.388 33.333 0.00 0.00 0.00 2.43
7160 7526 8.210265 AGATTCTTCAGGAGCTAAAATTCTAGG 58.790 37.037 0.00 0.00 0.00 3.02
7186 7552 1.409064 TCGACCTGTATAAGCTGCCAG 59.591 52.381 0.00 0.00 0.00 4.85
7187 7553 1.137086 CGACCTGTATAAGCTGCCAGT 59.863 52.381 0.00 0.00 0.00 4.00
7229 7595 3.806625 ATTGCAATAACCATGGCACTC 57.193 42.857 13.04 0.00 40.96 3.51
7231 7597 1.094785 GCAATAACCATGGCACTCGT 58.905 50.000 13.04 0.00 30.66 4.18
7232 7598 1.472480 GCAATAACCATGGCACTCGTT 59.528 47.619 13.04 0.00 30.66 3.85
7234 7600 2.746904 CAATAACCATGGCACTCGTTGA 59.253 45.455 13.04 0.00 0.00 3.18
7237 7607 0.396435 ACCATGGCACTCGTTGAAGA 59.604 50.000 13.04 0.00 0.00 2.87
7255 7625 6.889301 TGAAGAGATCAAAAGAAACATGCT 57.111 33.333 0.00 0.00 34.30 3.79
7256 7626 6.906659 TGAAGAGATCAAAAGAAACATGCTC 58.093 36.000 0.00 0.00 34.30 4.26
7257 7627 6.487668 TGAAGAGATCAAAAGAAACATGCTCA 59.512 34.615 0.00 0.00 34.30 4.26
7259 7629 7.463961 AGAGATCAAAAGAAACATGCTCATT 57.536 32.000 0.00 0.00 0.00 2.57
7260 7630 8.571461 AGAGATCAAAAGAAACATGCTCATTA 57.429 30.769 0.00 0.00 0.00 1.90
7288 7658 5.963176 TTCATGAAGTGCAGCAGAATAAA 57.037 34.783 3.38 0.00 0.00 1.40
7290 7660 5.005740 TCATGAAGTGCAGCAGAATAAAGT 58.994 37.500 0.00 0.00 0.00 2.66
7294 7664 6.172630 TGAAGTGCAGCAGAATAAAGTATCA 58.827 36.000 0.00 0.00 0.00 2.15
7302 7672 8.229137 GCAGCAGAATAAAGTATCAGATTCATC 58.771 37.037 0.00 0.00 31.92 2.92
7303 7673 9.491675 CAGCAGAATAAAGTATCAGATTCATCT 57.508 33.333 0.00 0.00 37.72 2.90
7317 7687 4.276926 AGATTCATCTGGCGGAAATTAAGC 59.723 41.667 0.00 0.00 35.42 3.09
7318 7688 2.997980 TCATCTGGCGGAAATTAAGCA 58.002 42.857 0.00 0.00 0.00 3.91
7319 7689 2.682856 TCATCTGGCGGAAATTAAGCAC 59.317 45.455 0.00 0.00 0.00 4.40
7320 7690 2.192664 TCTGGCGGAAATTAAGCACA 57.807 45.000 0.00 0.00 0.00 4.57
7321 7691 2.722094 TCTGGCGGAAATTAAGCACAT 58.278 42.857 0.00 0.00 0.00 3.21
7322 7692 2.423185 TCTGGCGGAAATTAAGCACATG 59.577 45.455 0.00 0.00 0.00 3.21
7323 7693 2.423185 CTGGCGGAAATTAAGCACATGA 59.577 45.455 0.00 0.00 0.00 3.07
7324 7694 2.423185 TGGCGGAAATTAAGCACATGAG 59.577 45.455 0.00 0.00 0.00 2.90
7325 7695 2.682856 GGCGGAAATTAAGCACATGAGA 59.317 45.455 0.00 0.00 0.00 3.27
7326 7696 3.316308 GGCGGAAATTAAGCACATGAGAT 59.684 43.478 0.00 0.00 0.00 2.75
7327 7697 4.202050 GGCGGAAATTAAGCACATGAGATT 60.202 41.667 0.00 0.00 0.00 2.40
7328 7698 4.972440 GCGGAAATTAAGCACATGAGATTC 59.028 41.667 0.00 0.00 0.00 2.52
7329 7699 5.220931 GCGGAAATTAAGCACATGAGATTCT 60.221 40.000 0.00 0.00 0.00 2.40
7330 7700 6.678900 GCGGAAATTAAGCACATGAGATTCTT 60.679 38.462 0.00 0.00 0.00 2.52
7331 7701 6.909357 CGGAAATTAAGCACATGAGATTCTTC 59.091 38.462 0.00 1.24 0.00 2.87
7332 7702 7.201679 CGGAAATTAAGCACATGAGATTCTTCT 60.202 37.037 0.00 0.00 33.88 2.85
7333 7703 7.914346 GGAAATTAAGCACATGAGATTCTTCTG 59.086 37.037 0.00 0.00 30.30 3.02
7334 7704 8.571461 AAATTAAGCACATGAGATTCTTCTGA 57.429 30.769 0.00 0.00 30.30 3.27
7335 7705 8.749026 AATTAAGCACATGAGATTCTTCTGAT 57.251 30.769 0.00 0.00 30.30 2.90
7336 7706 7.549615 TTAAGCACATGAGATTCTTCTGATG 57.450 36.000 0.00 1.61 45.77 3.07
7337 7707 5.354842 AGCACATGAGATTCTTCTGATGA 57.645 39.130 9.01 0.00 43.83 2.92
7338 7708 5.742063 AGCACATGAGATTCTTCTGATGAA 58.258 37.500 9.01 8.23 43.83 2.57
7339 7709 6.178324 AGCACATGAGATTCTTCTGATGAAA 58.822 36.000 9.01 0.00 43.83 2.69
7340 7710 6.657966 AGCACATGAGATTCTTCTGATGAAAA 59.342 34.615 9.01 0.00 43.83 2.29
7341 7711 7.176165 AGCACATGAGATTCTTCTGATGAAAAA 59.824 33.333 9.01 0.00 43.83 1.94
7342 7712 7.974501 GCACATGAGATTCTTCTGATGAAAAAT 59.025 33.333 9.01 0.44 43.83 1.82
7343 7713 9.290483 CACATGAGATTCTTCTGATGAAAAATG 57.710 33.333 9.01 11.92 43.83 2.32
7344 7714 7.974501 ACATGAGATTCTTCTGATGAAAAATGC 59.025 33.333 9.01 1.01 43.83 3.56
7345 7715 7.698506 TGAGATTCTTCTGATGAAAAATGCT 57.301 32.000 9.65 3.87 30.30 3.79
7346 7716 7.759465 TGAGATTCTTCTGATGAAAAATGCTC 58.241 34.615 9.65 10.95 30.30 4.26
7347 7717 7.098074 AGATTCTTCTGATGAAAAATGCTCC 57.902 36.000 9.65 0.00 0.00 4.70
7348 7718 5.649782 TTCTTCTGATGAAAAATGCTCCC 57.350 39.130 3.74 0.00 0.00 4.30
7349 7719 4.665451 TCTTCTGATGAAAAATGCTCCCA 58.335 39.130 0.00 0.00 0.00 4.37
7350 7720 4.703575 TCTTCTGATGAAAAATGCTCCCAG 59.296 41.667 0.00 0.00 0.00 4.45
7351 7721 4.038271 TCTGATGAAAAATGCTCCCAGT 57.962 40.909 0.00 0.00 0.00 4.00
7352 7722 4.410099 TCTGATGAAAAATGCTCCCAGTT 58.590 39.130 0.00 0.00 0.00 3.16
7353 7723 4.834496 TCTGATGAAAAATGCTCCCAGTTT 59.166 37.500 0.00 0.00 40.59 2.66
7354 7724 4.885413 TGATGAAAAATGCTCCCAGTTTG 58.115 39.130 0.00 0.00 38.19 2.93
7355 7725 4.588106 TGATGAAAAATGCTCCCAGTTTGA 59.412 37.500 0.00 0.00 38.19 2.69
7356 7726 4.589216 TGAAAAATGCTCCCAGTTTGAG 57.411 40.909 0.00 0.00 38.19 3.02
7360 7730 3.567473 GCTCCCAGTTTGAGCGTC 58.433 61.111 0.00 0.00 45.05 5.19
7361 7731 2.035442 GCTCCCAGTTTGAGCGTCC 61.035 63.158 0.00 0.00 45.05 4.79
7362 7732 1.674057 CTCCCAGTTTGAGCGTCCT 59.326 57.895 0.00 0.00 0.00 3.85
7363 7733 0.035458 CTCCCAGTTTGAGCGTCCTT 59.965 55.000 0.00 0.00 0.00 3.36
7364 7734 0.472471 TCCCAGTTTGAGCGTCCTTT 59.528 50.000 0.00 0.00 0.00 3.11
7365 7735 1.133915 TCCCAGTTTGAGCGTCCTTTT 60.134 47.619 0.00 0.00 0.00 2.27
7366 7736 1.681264 CCCAGTTTGAGCGTCCTTTTT 59.319 47.619 0.00 0.00 0.00 1.94
7367 7737 2.882137 CCCAGTTTGAGCGTCCTTTTTA 59.118 45.455 0.00 0.00 0.00 1.52
7368 7738 3.058224 CCCAGTTTGAGCGTCCTTTTTAG 60.058 47.826 0.00 0.00 0.00 1.85
7369 7739 3.555518 CAGTTTGAGCGTCCTTTTTAGC 58.444 45.455 0.00 0.00 0.00 3.09
7370 7740 2.552743 AGTTTGAGCGTCCTTTTTAGCC 59.447 45.455 0.00 0.00 0.00 3.93
7371 7741 1.153353 TTGAGCGTCCTTTTTAGCCG 58.847 50.000 0.00 0.00 0.00 5.52
7372 7742 0.319083 TGAGCGTCCTTTTTAGCCGA 59.681 50.000 0.00 0.00 0.00 5.54
7373 7743 1.066430 TGAGCGTCCTTTTTAGCCGAT 60.066 47.619 0.00 0.00 0.00 4.18
7374 7744 2.166870 TGAGCGTCCTTTTTAGCCGATA 59.833 45.455 0.00 0.00 0.00 2.92
7375 7745 2.538861 GAGCGTCCTTTTTAGCCGATAC 59.461 50.000 0.00 0.00 0.00 2.24
7376 7746 2.167900 AGCGTCCTTTTTAGCCGATACT 59.832 45.455 0.00 0.00 0.00 2.12
7377 7747 2.538861 GCGTCCTTTTTAGCCGATACTC 59.461 50.000 0.00 0.00 0.00 2.59
7378 7748 3.121544 CGTCCTTTTTAGCCGATACTCC 58.878 50.000 0.00 0.00 0.00 3.85
7379 7749 3.429822 CGTCCTTTTTAGCCGATACTCCA 60.430 47.826 0.00 0.00 0.00 3.86
7380 7750 4.510571 GTCCTTTTTAGCCGATACTCCAA 58.489 43.478 0.00 0.00 0.00 3.53
7381 7751 5.123936 GTCCTTTTTAGCCGATACTCCAAT 58.876 41.667 0.00 0.00 0.00 3.16
7382 7752 5.589050 GTCCTTTTTAGCCGATACTCCAATT 59.411 40.000 0.00 0.00 0.00 2.32
7383 7753 6.764560 GTCCTTTTTAGCCGATACTCCAATTA 59.235 38.462 0.00 0.00 0.00 1.40
7384 7754 6.764560 TCCTTTTTAGCCGATACTCCAATTAC 59.235 38.462 0.00 0.00 0.00 1.89
7385 7755 6.540914 CCTTTTTAGCCGATACTCCAATTACA 59.459 38.462 0.00 0.00 0.00 2.41
7386 7756 7.228706 CCTTTTTAGCCGATACTCCAATTACAT 59.771 37.037 0.00 0.00 0.00 2.29
7387 7757 7.490962 TTTTAGCCGATACTCCAATTACATG 57.509 36.000 0.00 0.00 0.00 3.21
7388 7758 4.008074 AGCCGATACTCCAATTACATGG 57.992 45.455 0.00 0.00 42.12 3.66
7389 7759 3.391296 AGCCGATACTCCAATTACATGGT 59.609 43.478 0.00 0.00 41.46 3.55
7390 7760 4.591498 AGCCGATACTCCAATTACATGGTA 59.409 41.667 0.00 0.00 41.46 3.25
7391 7761 5.248477 AGCCGATACTCCAATTACATGGTAT 59.752 40.000 0.00 0.00 41.46 2.73
7392 7762 5.938125 GCCGATACTCCAATTACATGGTATT 59.062 40.000 0.00 0.00 41.46 1.89
7393 7763 6.092259 GCCGATACTCCAATTACATGGTATTC 59.908 42.308 0.00 0.00 41.46 1.75
7394 7764 7.386851 CCGATACTCCAATTACATGGTATTCT 58.613 38.462 0.00 0.00 41.46 2.40
7395 7765 7.878127 CCGATACTCCAATTACATGGTATTCTT 59.122 37.037 0.00 0.00 41.46 2.52
7396 7766 9.273016 CGATACTCCAATTACATGGTATTCTTT 57.727 33.333 0.00 0.00 41.46 2.52
7398 7768 7.100458 ACTCCAATTACATGGTATTCTTTGC 57.900 36.000 0.00 0.00 41.46 3.68
7399 7769 6.891908 ACTCCAATTACATGGTATTCTTTGCT 59.108 34.615 0.00 0.00 41.46 3.91
7400 7770 7.397192 ACTCCAATTACATGGTATTCTTTGCTT 59.603 33.333 0.00 0.00 41.46 3.91
7401 7771 8.133024 TCCAATTACATGGTATTCTTTGCTTT 57.867 30.769 0.00 0.00 41.46 3.51
7402 7772 9.249053 TCCAATTACATGGTATTCTTTGCTTTA 57.751 29.630 0.00 0.00 41.46 1.85
7403 7773 9.868277 CCAATTACATGGTATTCTTTGCTTTAA 57.132 29.630 0.00 0.00 35.65 1.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 5.046663 ACACCCCATTTGATTACAATGGAAC 60.047 40.000 12.39 0.00 37.11 3.62
26 27 6.726379 TCAAGTAATATCACACCCCATTTGA 58.274 36.000 0.00 0.00 0.00 2.69
31 32 5.128827 GTCTCTCAAGTAATATCACACCCCA 59.871 44.000 0.00 0.00 0.00 4.96
34 35 4.740695 GCGTCTCTCAAGTAATATCACACC 59.259 45.833 0.00 0.00 0.00 4.16
35 36 5.457148 CAGCGTCTCTCAAGTAATATCACAC 59.543 44.000 0.00 0.00 0.00 3.82
77 78 0.767375 AACAGCAAAGCTCCAGAGGA 59.233 50.000 0.00 0.00 36.40 3.71
85 86 1.884579 CATGGACTCAACAGCAAAGCT 59.115 47.619 0.00 0.00 40.77 3.74
95 96 2.632377 GAGGCGAATTCATGGACTCAA 58.368 47.619 6.22 0.00 0.00 3.02
119 120 1.524863 CCATCGGAGCGGTAGGTAGG 61.525 65.000 0.00 0.00 0.00 3.18
133 134 2.896854 CCACACCATCGGCCATCG 60.897 66.667 2.24 0.00 40.90 3.84
222 223 3.017323 GCGTCATCATCCGCCTTG 58.983 61.111 0.00 0.00 43.96 3.61
234 235 3.787476 GCAAACTCGAAGAAAAAGCGTCA 60.787 43.478 0.00 0.00 34.09 4.35
263 264 2.035155 TCGAGGAGGGTCGAAGCA 59.965 61.111 0.00 0.00 45.74 3.91
271 272 0.905357 ATGGACAAACTCGAGGAGGG 59.095 55.000 18.41 5.76 33.35 4.30
292 293 1.979831 GAGCTTCGCCGACTACGTCT 61.980 60.000 0.00 0.00 37.88 4.18
293 294 1.583194 GAGCTTCGCCGACTACGTC 60.583 63.158 0.00 0.00 37.88 4.34
294 295 2.484203 GAGCTTCGCCGACTACGT 59.516 61.111 0.00 0.00 37.88 3.57
295 296 2.278013 GGAGCTTCGCCGACTACG 60.278 66.667 0.00 0.00 39.43 3.51
312 314 4.456222 AGGAGATGGTGATAATCTACGTCG 59.544 45.833 0.00 0.00 39.60 5.12
341 343 0.321034 AAGAAACCGTAACCTCGCCC 60.321 55.000 0.00 0.00 0.00 6.13
342 344 2.368655 TAAGAAACCGTAACCTCGCC 57.631 50.000 0.00 0.00 0.00 5.54
352 354 1.201769 CGCACACACGATAAGAAACCG 60.202 52.381 0.00 0.00 34.06 4.44
360 362 0.734597 ATTGTCGCGCACACACGATA 60.735 50.000 8.75 0.00 40.90 2.92
379 381 4.952957 TGAAGAAATTGACACCAAACCTCA 59.047 37.500 0.00 0.00 35.67 3.86
403 405 6.203915 TCGTCATCATTAAACCCGGATAAATG 59.796 38.462 0.73 7.70 0.00 2.32
406 408 5.051816 GTCGTCATCATTAAACCCGGATAA 58.948 41.667 0.73 0.00 0.00 1.75
410 412 1.937899 GGTCGTCATCATTAAACCCGG 59.062 52.381 0.00 0.00 0.00 5.73
420 422 3.982372 GAAGCCGCGGTCGTCATCA 62.982 63.158 28.70 0.00 0.00 3.07
423 425 4.717629 CTGAAGCCGCGGTCGTCA 62.718 66.667 28.70 27.18 0.00 4.35
442 444 0.543749 GTGCCTCTAAGGACCAGCAT 59.456 55.000 0.00 0.00 37.67 3.79
456 458 1.032014 AAGTTTTCGTGCATGTGCCT 58.968 45.000 5.68 0.00 41.18 4.75
460 462 3.743911 TGTCGATAAGTTTTCGTGCATGT 59.256 39.130 14.13 0.00 37.82 3.21
475 487 1.673626 GCCGGTTTGACCTTGTCGATA 60.674 52.381 1.90 0.00 35.66 2.92
511 523 0.704008 CGTTGACGCGTTGTTATCGA 59.296 50.000 15.53 0.00 32.72 3.59
548 561 0.250124 CCAGCGAACAACCACTACCA 60.250 55.000 0.00 0.00 0.00 3.25
652 667 4.668289 TCTCTCGGAAACTTTTTGCAAAC 58.332 39.130 12.39 0.00 0.00 2.93
654 669 3.315191 CCTCTCTCGGAAACTTTTTGCAA 59.685 43.478 0.00 0.00 0.00 4.08
656 671 2.350868 GCCTCTCTCGGAAACTTTTTGC 60.351 50.000 0.00 0.00 0.00 3.68
657 672 3.058639 CAGCCTCTCTCGGAAACTTTTTG 60.059 47.826 0.00 0.00 0.00 2.44
658 673 3.142174 CAGCCTCTCTCGGAAACTTTTT 58.858 45.455 0.00 0.00 0.00 1.94
659 674 2.104963 ACAGCCTCTCTCGGAAACTTTT 59.895 45.455 0.00 0.00 0.00 2.27
660 675 1.694696 ACAGCCTCTCTCGGAAACTTT 59.305 47.619 0.00 0.00 0.00 2.66
661 676 1.001406 CACAGCCTCTCTCGGAAACTT 59.999 52.381 0.00 0.00 0.00 2.66
663 678 0.390472 CCACAGCCTCTCTCGGAAAC 60.390 60.000 0.00 0.00 0.00 2.78
664 679 1.544825 CCCACAGCCTCTCTCGGAAA 61.545 60.000 0.00 0.00 0.00 3.13
665 680 1.984570 CCCACAGCCTCTCTCGGAA 60.985 63.158 0.00 0.00 0.00 4.30
669 687 2.664081 CCACCCCACAGCCTCTCTC 61.664 68.421 0.00 0.00 0.00 3.20
780 810 3.036959 TCCCTCTCCCTCCCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
781 811 2.015726 TCTCCCTCTCCCTCCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
782 812 1.541672 CTCTCCCTCTCCCTCCCTC 59.458 68.421 0.00 0.00 0.00 4.30
783 813 2.018086 CCTCTCCCTCTCCCTCCCT 61.018 68.421 0.00 0.00 0.00 4.20
866 902 1.265095 CAATCTGATTAATGCGCGCCT 59.735 47.619 30.77 17.59 0.00 5.52
964 1000 2.760385 GTCCAGGGGAGGAGTCCG 60.760 72.222 2.76 0.00 45.05 4.79
965 1001 2.365768 GGTCCAGGGGAGGAGTCC 60.366 72.222 0.00 0.00 43.05 3.85
966 1002 2.760385 CGGTCCAGGGGAGGAGTC 60.760 72.222 0.00 0.00 38.64 3.36
967 1003 4.400251 CCGGTCCAGGGGAGGAGT 62.400 72.222 0.00 0.00 38.64 3.85
971 1007 4.101448 CTTGCCGGTCCAGGGGAG 62.101 72.222 1.90 0.00 29.39 4.30
985 1021 4.303603 CATCGCCGATGCCGCTTG 62.304 66.667 14.88 0.00 33.17 4.01
1131 1176 4.567971 GCGGAATTGAGATCAGAGATCAT 58.432 43.478 9.43 0.00 0.00 2.45
1167 1212 1.241315 CCTGACACGGGCCGAAATTT 61.241 55.000 35.78 6.54 0.00 1.82
1194 1250 0.798776 GAGTGAATTGCGGACCACAG 59.201 55.000 6.18 0.00 32.35 3.66
1373 1483 2.290641 ACACACCTTCAACACAACTCCA 60.291 45.455 0.00 0.00 0.00 3.86
1380 1490 4.165779 CAAACTTCACACACCTTCAACAC 58.834 43.478 0.00 0.00 0.00 3.32
1499 1613 2.035576 GGCAAATGGCTTCAGATCATCC 59.964 50.000 0.00 0.00 44.01 3.51
1511 1625 1.518774 CCATGGACAGGCAAATGGC 59.481 57.895 5.56 0.00 43.74 4.40
1514 1628 1.686800 GCCCCATGGACAGGCAAAT 60.687 57.895 21.76 0.00 46.34 2.32
1551 1670 1.148157 CGAGCAGCCAATCGACGAAT 61.148 55.000 0.00 0.00 41.40 3.34
1629 1751 3.312828 CGCTAGCTATCATGGAGTTCAC 58.687 50.000 13.93 0.00 0.00 3.18
1650 1778 2.040544 CATCACCCTTGGTCGTGCC 61.041 63.158 0.00 0.00 31.02 5.01
1675 1803 4.806330 TCTGTTTCCGCTAACTAACTCTG 58.194 43.478 0.00 0.00 0.00 3.35
1689 1817 5.047188 GCTCAGCTAACTATCTCTGTTTCC 58.953 45.833 0.00 0.00 0.00 3.13
1727 1855 7.096147 GCAGTAAGAACTATACAAGGATAACGC 60.096 40.741 0.00 0.00 33.48 4.84
1758 1886 7.869429 AGAAGAAACAGTATGATTGCCAAAAAG 59.131 33.333 0.00 0.00 39.69 2.27
2081 2210 8.580720 CCTAGAGAATAAGAAAGCACAGCTATA 58.419 37.037 0.00 0.00 38.25 1.31
2126 2255 2.988010 TATCCATGGAGCTGACACAC 57.012 50.000 21.33 0.00 0.00 3.82
2356 2486 1.302511 CAGCCGTACCTGCAACCTT 60.303 57.895 4.99 0.00 0.00 3.50
2424 2554 7.121168 ACTCCAACAAACATATCACCACTATTG 59.879 37.037 0.00 0.00 0.00 1.90
2471 2601 9.066892 GGGAAGCATATATTCATGAAACTTACA 57.933 33.333 13.09 0.00 0.00 2.41
2598 2728 8.486961 AGGTAACAAAATGCGACTATAGCACAA 61.487 37.037 0.00 0.00 44.14 3.33
2610 2740 7.883229 ATAAAAGGAAAGGTAACAAAATGCG 57.117 32.000 0.00 0.00 41.41 4.73
2662 2792 1.760029 TCGTAATAGCCCTGCATGTCA 59.240 47.619 0.00 0.00 0.00 3.58
2763 2893 6.483307 TGATAAATTCTGGTTTAGAGCATCGG 59.517 38.462 0.00 0.00 42.67 4.18
3040 3170 5.649782 ACAAAAGGTTGCCAGATTATGAG 57.350 39.130 0.00 0.00 38.39 2.90
3046 3176 7.346471 AGTATATGTACAAAAGGTTGCCAGAT 58.654 34.615 0.00 0.00 38.39 2.90
3097 3227 2.159240 GGCTAAATACAGTGGCAAAGGC 60.159 50.000 0.00 0.00 40.13 4.35
3309 3439 2.113860 ACATGCCATATACGCCCATC 57.886 50.000 0.00 0.00 0.00 3.51
3377 3508 9.813446 AACAGAATACTAGAATACGGGTTTAAG 57.187 33.333 0.00 0.00 0.00 1.85
3439 3570 1.198713 TCAGCCCAGGAACTCTGATC 58.801 55.000 0.00 0.00 46.18 2.92
3442 3573 0.689623 ACTTCAGCCCAGGAACTCTG 59.310 55.000 0.00 0.00 43.00 3.35
3675 3807 6.812879 ACGTGTATATACATCCGATTCAGA 57.187 37.500 24.50 0.00 38.63 3.27
3702 3836 8.843733 CATCTGAAATGAGTGAATAAAAACACG 58.156 33.333 0.00 0.00 41.22 4.49
3755 3892 7.289317 ACTCCCTCCGTTCACAAATATAAGATA 59.711 37.037 0.00 0.00 0.00 1.98
3985 4123 9.801873 GATAAAACACAAGGCACATGTATTTAT 57.198 29.630 0.00 14.02 35.57 1.40
3986 4124 8.247562 GGATAAAACACAAGGCACATGTATTTA 58.752 33.333 0.00 0.04 35.57 1.40
4009 4147 5.603813 AGCAAACATGCATTTATAAGGGGAT 59.396 36.000 0.00 0.00 37.25 3.85
4318 4456 0.469917 GCTAAGCCAGTATGAGCCCA 59.530 55.000 0.00 0.00 39.69 5.36
4332 4470 5.582665 GTCATAACACTCCTTTCAGGCTAAG 59.417 44.000 0.00 0.00 34.61 2.18
4338 4476 6.226787 ACTTCAGTCATAACACTCCTTTCAG 58.773 40.000 0.00 0.00 0.00 3.02
4348 4486 4.637091 TCGGTCGATACTTCAGTCATAACA 59.363 41.667 0.00 0.00 0.00 2.41
4358 4496 5.117355 TGGTCAATATCGGTCGATACTTC 57.883 43.478 14.22 6.66 39.56 3.01
4361 4499 6.780706 ATTTTGGTCAATATCGGTCGATAC 57.219 37.500 14.22 5.53 39.56 2.24
4374 4512 7.106890 TGAGTATCGGTCAATATTTTGGTCAA 58.893 34.615 0.00 0.00 38.61 3.18
4846 5063 8.523658 GCAGTACCATGTTCAGTGATCTATATA 58.476 37.037 0.00 0.00 0.00 0.86
4847 5064 7.234371 AGCAGTACCATGTTCAGTGATCTATAT 59.766 37.037 0.00 0.00 0.00 0.86
4848 5065 6.551227 AGCAGTACCATGTTCAGTGATCTATA 59.449 38.462 0.00 0.00 0.00 1.31
4849 5066 5.365025 AGCAGTACCATGTTCAGTGATCTAT 59.635 40.000 0.00 0.00 0.00 1.98
4850 5067 4.711846 AGCAGTACCATGTTCAGTGATCTA 59.288 41.667 0.00 0.00 0.00 1.98
4851 5068 3.517100 AGCAGTACCATGTTCAGTGATCT 59.483 43.478 0.00 0.00 0.00 2.75
4852 5069 3.866651 AGCAGTACCATGTTCAGTGATC 58.133 45.455 0.00 0.00 0.00 2.92
4853 5070 3.988976 AGCAGTACCATGTTCAGTGAT 57.011 42.857 0.00 0.00 0.00 3.06
4854 5071 3.832490 ACTAGCAGTACCATGTTCAGTGA 59.168 43.478 0.00 0.00 0.00 3.41
5027 5246 5.329399 AGTGAGATAGGTCTTGACTTCAGT 58.671 41.667 0.61 0.00 33.97 3.41
5276 5505 5.692115 TGTAATCTAATCCTTCAGTGCCA 57.308 39.130 0.00 0.00 0.00 4.92
5282 5511 8.548025 TGACCAGAAATGTAATCTAATCCTTCA 58.452 33.333 0.00 0.00 0.00 3.02
5335 5564 3.100817 CAAAGTTCTCAACGTGCAACTG 58.899 45.455 0.00 0.00 36.23 3.16
5375 5604 5.418840 AGCACCTTTCAAGAACAGAAAAAGA 59.581 36.000 0.00 0.00 34.84 2.52
5384 5613 3.461843 CGCAGCACCTTTCAAGAAC 57.538 52.632 0.00 0.00 0.00 3.01
5463 5692 5.413523 TGCAGAATAAGTAGTCAGTGTCGTA 59.586 40.000 0.00 0.00 0.00 3.43
5498 5727 3.610911 AGCCTATGAAAGTGCCAGTTAC 58.389 45.455 0.00 0.00 0.00 2.50
5511 5740 6.065976 TCTTCTCCAATTTTGAGCCTATGA 57.934 37.500 0.00 0.00 0.00 2.15
5671 5901 4.740695 CGCCTTGCTTAAGATAGTACAGAC 59.259 45.833 6.67 0.00 0.00 3.51
5707 5937 1.736645 GCACATGCCTTGCAAGCTG 60.737 57.895 21.43 18.15 43.62 4.24
5777 6034 6.940739 AGTTTGCACAGAAGATATGTACTCT 58.059 36.000 0.00 0.00 0.00 3.24
5778 6035 7.976734 ACTAGTTTGCACAGAAGATATGTACTC 59.023 37.037 0.00 0.00 0.00 2.59
5779 6036 7.841956 ACTAGTTTGCACAGAAGATATGTACT 58.158 34.615 0.00 0.00 0.00 2.73
5780 6037 8.383619 CAACTAGTTTGCACAGAAGATATGTAC 58.616 37.037 5.07 0.00 0.00 2.90
5781 6038 8.479313 CAACTAGTTTGCACAGAAGATATGTA 57.521 34.615 5.07 0.00 0.00 2.29
5782 6039 7.369803 CAACTAGTTTGCACAGAAGATATGT 57.630 36.000 5.07 0.00 0.00 2.29
5894 6187 9.958180 TTCACTAATGGAGTTAAAGATGAATGA 57.042 29.630 0.00 0.00 35.64 2.57
5908 6201 5.464722 CACGATGGAAGATTCACTAATGGAG 59.535 44.000 0.00 0.00 0.00 3.86
6000 6293 4.905429 TCCGAGTCCTTTTCATCAATCAA 58.095 39.130 0.00 0.00 0.00 2.57
6406 6700 3.776731 TCCTAGAACAGGGGAATCAGA 57.223 47.619 0.00 0.00 45.58 3.27
6522 6816 3.515502 TGGAGTTCTAAGACCTCACATGG 59.484 47.826 0.00 0.00 0.00 3.66
6531 6825 3.449018 TGATGCTCCTGGAGTTCTAAGAC 59.551 47.826 23.92 6.20 31.39 3.01
6611 6928 4.442893 CCACATACGCCTATTCCTTCTTCA 60.443 45.833 0.00 0.00 0.00 3.02
6627 6945 2.099141 TCACAAGAGCTGCCACATAC 57.901 50.000 0.00 0.00 0.00 2.39
6630 6951 1.241165 CATTCACAAGAGCTGCCACA 58.759 50.000 0.00 0.00 0.00 4.17
6699 7020 4.316025 GCCTATGCTAAATCCCCCATAA 57.684 45.455 0.00 0.00 33.53 1.90
6729 7051 5.356470 AGCATCAAATAGAAAGGCTCAAGAC 59.644 40.000 0.00 0.00 29.62 3.01
6766 7088 1.133790 GCTGCTCTTTACATGCCAAGG 59.866 52.381 0.00 0.00 0.00 3.61
6769 7091 0.321564 ACGCTGCTCTTTACATGCCA 60.322 50.000 0.00 0.00 0.00 4.92
6796 7118 4.035208 CCTTCCATACTGTAATTTGTCGGC 59.965 45.833 0.00 0.00 0.00 5.54
6798 7120 5.064707 CCACCTTCCATACTGTAATTTGTCG 59.935 44.000 0.00 0.00 0.00 4.35
6810 7132 3.418684 AGTGTTGACCACCTTCCATAC 57.581 47.619 0.00 0.00 45.74 2.39
6811 7133 4.447138 AAAGTGTTGACCACCTTCCATA 57.553 40.909 0.00 0.00 45.74 2.74
6844 7168 0.586802 GTCAACAGTTCACCGCCTTC 59.413 55.000 0.00 0.00 0.00 3.46
6881 7205 7.334858 TGCTTCTCCACAAATACATACATGTA 58.665 34.615 8.27 8.27 46.21 2.29
6882 7206 6.179756 TGCTTCTCCACAAATACATACATGT 58.820 36.000 2.69 2.69 44.48 3.21
6883 7207 6.682423 TGCTTCTCCACAAATACATACATG 57.318 37.500 0.00 0.00 0.00 3.21
6884 7208 7.056006 TCATGCTTCTCCACAAATACATACAT 58.944 34.615 0.00 0.00 0.00 2.29
6885 7209 6.413892 TCATGCTTCTCCACAAATACATACA 58.586 36.000 0.00 0.00 0.00 2.29
6886 7210 6.512415 GCTCATGCTTCTCCACAAATACATAC 60.512 42.308 0.00 0.00 36.03 2.39
6887 7211 5.528690 GCTCATGCTTCTCCACAAATACATA 59.471 40.000 0.00 0.00 36.03 2.29
6888 7212 4.337555 GCTCATGCTTCTCCACAAATACAT 59.662 41.667 0.00 0.00 36.03 2.29
6889 7213 3.691118 GCTCATGCTTCTCCACAAATACA 59.309 43.478 0.00 0.00 36.03 2.29
6890 7214 3.065925 GGCTCATGCTTCTCCACAAATAC 59.934 47.826 0.00 0.00 39.59 1.89
6891 7215 3.054139 AGGCTCATGCTTCTCCACAAATA 60.054 43.478 0.00 0.00 39.59 1.40
6892 7216 2.097825 GGCTCATGCTTCTCCACAAAT 58.902 47.619 0.00 0.00 39.59 2.32
6893 7217 1.074405 AGGCTCATGCTTCTCCACAAA 59.926 47.619 0.00 0.00 39.59 2.83
6894 7218 0.694771 AGGCTCATGCTTCTCCACAA 59.305 50.000 0.00 0.00 39.59 3.33
6895 7219 0.035725 CAGGCTCATGCTTCTCCACA 60.036 55.000 0.00 0.00 39.59 4.17
6896 7220 0.035630 ACAGGCTCATGCTTCTCCAC 60.036 55.000 0.00 0.00 39.59 4.02
6897 7221 0.035725 CACAGGCTCATGCTTCTCCA 60.036 55.000 0.00 0.00 39.59 3.86
6898 7222 0.251354 TCACAGGCTCATGCTTCTCC 59.749 55.000 0.00 0.00 39.59 3.71
6899 7223 1.654317 CTCACAGGCTCATGCTTCTC 58.346 55.000 0.00 0.00 39.59 2.87
6900 7224 0.392729 GCTCACAGGCTCATGCTTCT 60.393 55.000 0.00 0.00 39.59 2.85
6901 7225 0.392729 AGCTCACAGGCTCATGCTTC 60.393 55.000 0.00 0.00 38.24 3.86
6902 7226 0.037877 AAGCTCACAGGCTCATGCTT 59.962 50.000 7.46 7.46 42.24 3.91
6903 7227 0.037877 AAAGCTCACAGGCTCATGCT 59.962 50.000 0.00 0.00 42.24 3.79
6904 7228 0.450983 GAAAGCTCACAGGCTCATGC 59.549 55.000 0.00 0.00 42.24 4.06
6905 7229 1.817357 TGAAAGCTCACAGGCTCATG 58.183 50.000 0.00 0.00 42.24 3.07
6915 7239 0.976641 ATCCTGGACGTGAAAGCTCA 59.023 50.000 0.00 0.00 0.00 4.26
6955 7279 6.901081 ATTAAATGGCAGCTTATAAGGGTC 57.099 37.500 14.28 0.00 0.00 4.46
6960 7284 9.681062 GGGAGTATATTAAATGGCAGCTTATAA 57.319 33.333 0.00 0.00 0.00 0.98
6963 7287 7.237679 AGAGGGAGTATATTAAATGGCAGCTTA 59.762 37.037 0.00 0.00 0.00 3.09
6964 7288 6.044871 AGAGGGAGTATATTAAATGGCAGCTT 59.955 38.462 0.00 0.00 0.00 3.74
6966 7290 5.810095 AGAGGGAGTATATTAAATGGCAGC 58.190 41.667 0.00 0.00 0.00 5.25
6968 7292 9.784376 ACTATAGAGGGAGTATATTAAATGGCA 57.216 33.333 6.78 0.00 0.00 4.92
6993 7317 9.160496 CTCCCAATATAAGAGCATTTAGATCAC 57.840 37.037 0.00 0.00 34.30 3.06
7001 7325 9.401058 GCAATATACTCCCAATATAAGAGCATT 57.599 33.333 0.00 0.00 0.00 3.56
7008 7332 9.627123 GGCTATTGCAATATACTCCCAATATAA 57.373 33.333 19.17 0.00 41.91 0.98
7011 7335 7.026697 TGGCTATTGCAATATACTCCCAATA 57.973 36.000 19.17 0.00 41.91 1.90
7012 7336 5.891198 TGGCTATTGCAATATACTCCCAAT 58.109 37.500 19.17 0.00 41.91 3.16
7013 7337 5.317600 TGGCTATTGCAATATACTCCCAA 57.682 39.130 19.17 0.00 41.91 4.12
7015 7339 5.256474 ACATGGCTATTGCAATATACTCCC 58.744 41.667 19.17 13.99 41.91 4.30
7016 7340 5.939883 TGACATGGCTATTGCAATATACTCC 59.060 40.000 19.17 16.57 41.91 3.85
7017 7341 6.652481 AGTGACATGGCTATTGCAATATACTC 59.348 38.462 19.17 9.75 41.91 2.59
7018 7342 6.537355 AGTGACATGGCTATTGCAATATACT 58.463 36.000 19.17 10.39 41.91 2.12
7019 7343 6.427853 TGAGTGACATGGCTATTGCAATATAC 59.572 38.462 19.17 14.77 41.91 1.47
7020 7344 6.532826 TGAGTGACATGGCTATTGCAATATA 58.467 36.000 19.17 9.62 41.91 0.86
7022 7346 4.779696 TGAGTGACATGGCTATTGCAATA 58.220 39.130 17.94 17.94 41.91 1.90
7023 7347 3.623703 TGAGTGACATGGCTATTGCAAT 58.376 40.909 17.56 17.56 41.91 3.56
7039 7392 7.551974 AGTTCTGTTTGATATCTTCCATGAGTG 59.448 37.037 3.98 0.00 0.00 3.51
7078 7431 6.441093 TTCCTTATTCTGCTGCACTTTATG 57.559 37.500 0.00 0.00 0.00 1.90
7080 7433 6.179756 TGATTCCTTATTCTGCTGCACTTTA 58.820 36.000 0.00 0.00 0.00 1.85
7083 7436 4.080695 TCTGATTCCTTATTCTGCTGCACT 60.081 41.667 0.00 0.00 0.00 4.40
7112 7465 2.896685 TGTGTGCTTAATTTTCCCCCAG 59.103 45.455 0.00 0.00 0.00 4.45
7116 7469 6.691508 AGAATCTTGTGTGCTTAATTTTCCC 58.308 36.000 0.00 0.00 0.00 3.97
7127 7480 2.161211 GCTCCTGAAGAATCTTGTGTGC 59.839 50.000 0.00 0.00 0.00 4.57
7132 7485 8.278729 AGAATTTTAGCTCCTGAAGAATCTTG 57.721 34.615 0.00 0.00 0.00 3.02
7133 7486 9.612066 CTAGAATTTTAGCTCCTGAAGAATCTT 57.388 33.333 0.00 0.00 0.00 2.40
7149 7515 7.899973 ACAGGTCGACTTTACCTAGAATTTTA 58.100 34.615 16.46 0.00 45.78 1.52
7159 7525 5.041940 CAGCTTATACAGGTCGACTTTACC 58.958 45.833 16.46 0.00 37.27 2.85
7160 7526 4.503370 GCAGCTTATACAGGTCGACTTTAC 59.497 45.833 16.46 0.00 0.00 2.01
7179 7545 4.384056 ACATGTATGAGATTACTGGCAGC 58.616 43.478 15.89 0.00 0.00 5.25
7218 7584 0.396435 TCTTCAACGAGTGCCATGGT 59.604 50.000 14.67 0.00 0.00 3.55
7229 7595 6.087291 GCATGTTTCTTTTGATCTCTTCAACG 59.913 38.462 0.00 0.00 43.99 4.10
7231 7597 7.013559 TGAGCATGTTTCTTTTGATCTCTTCAA 59.986 33.333 0.00 0.00 42.62 2.69
7232 7598 6.487668 TGAGCATGTTTCTTTTGATCTCTTCA 59.512 34.615 0.00 0.00 0.00 3.02
7234 7600 6.889301 TGAGCATGTTTCTTTTGATCTCTT 57.111 33.333 0.00 0.00 0.00 2.85
7270 7640 6.172630 TGATACTTTATTCTGCTGCACTTCA 58.827 36.000 0.00 0.00 0.00 3.02
7271 7641 6.536582 TCTGATACTTTATTCTGCTGCACTTC 59.463 38.462 0.00 0.00 0.00 3.01
7294 7664 4.276926 GCTTAATTTCCGCCAGATGAATCT 59.723 41.667 0.00 0.00 37.72 2.40
7302 7672 2.423185 TCATGTGCTTAATTTCCGCCAG 59.577 45.455 0.00 0.00 0.00 4.85
7303 7673 2.423185 CTCATGTGCTTAATTTCCGCCA 59.577 45.455 0.00 0.00 0.00 5.69
7304 7674 2.682856 TCTCATGTGCTTAATTTCCGCC 59.317 45.455 0.00 0.00 0.00 6.13
7305 7675 4.558538 ATCTCATGTGCTTAATTTCCGC 57.441 40.909 0.00 0.00 0.00 5.54
7306 7676 6.369059 AGAATCTCATGTGCTTAATTTCCG 57.631 37.500 0.00 0.00 0.00 4.30
7307 7677 7.914346 CAGAAGAATCTCATGTGCTTAATTTCC 59.086 37.037 0.00 0.00 32.03 3.13
7308 7678 8.671921 TCAGAAGAATCTCATGTGCTTAATTTC 58.328 33.333 0.00 0.00 32.03 2.17
7309 7679 8.571461 TCAGAAGAATCTCATGTGCTTAATTT 57.429 30.769 0.00 0.00 32.03 1.82
7310 7680 8.622157 CATCAGAAGAATCTCATGTGCTTAATT 58.378 33.333 0.00 0.00 30.19 1.40
7311 7681 7.991460 TCATCAGAAGAATCTCATGTGCTTAAT 59.009 33.333 0.00 0.00 35.78 1.40
7312 7682 7.333323 TCATCAGAAGAATCTCATGTGCTTAA 58.667 34.615 0.00 0.00 35.78 1.85
7313 7683 6.881570 TCATCAGAAGAATCTCATGTGCTTA 58.118 36.000 0.00 0.00 35.78 3.09
7314 7684 5.742063 TCATCAGAAGAATCTCATGTGCTT 58.258 37.500 0.00 0.00 35.78 3.91
7315 7685 5.354842 TCATCAGAAGAATCTCATGTGCT 57.645 39.130 0.00 0.00 35.78 4.40
7316 7686 6.432607 TTTCATCAGAAGAATCTCATGTGC 57.567 37.500 0.00 0.00 35.78 4.57
7317 7687 9.290483 CATTTTTCATCAGAAGAATCTCATGTG 57.710 33.333 0.00 0.00 35.78 3.21
7318 7688 7.974501 GCATTTTTCATCAGAAGAATCTCATGT 59.025 33.333 0.00 0.00 35.78 3.21
7319 7689 8.191446 AGCATTTTTCATCAGAAGAATCTCATG 58.809 33.333 0.00 0.00 36.69 3.07
7320 7690 8.294954 AGCATTTTTCATCAGAAGAATCTCAT 57.705 30.769 0.00 0.00 36.69 2.90
7321 7691 7.148120 GGAGCATTTTTCATCAGAAGAATCTCA 60.148 37.037 14.73 0.00 36.69 3.27
7322 7692 7.194962 GGAGCATTTTTCATCAGAAGAATCTC 58.805 38.462 0.00 0.00 36.69 2.75
7323 7693 6.096564 GGGAGCATTTTTCATCAGAAGAATCT 59.903 38.462 0.00 0.00 36.69 2.40
7324 7694 6.127535 TGGGAGCATTTTTCATCAGAAGAATC 60.128 38.462 0.00 0.00 36.69 2.52
7325 7695 5.718130 TGGGAGCATTTTTCATCAGAAGAAT 59.282 36.000 0.00 0.00 38.63 2.40
7326 7696 5.078949 TGGGAGCATTTTTCATCAGAAGAA 58.921 37.500 0.00 0.00 34.71 2.52
7327 7697 4.665451 TGGGAGCATTTTTCATCAGAAGA 58.335 39.130 0.00 0.00 34.71 2.87
7328 7698 4.461781 ACTGGGAGCATTTTTCATCAGAAG 59.538 41.667 0.00 0.00 34.71 2.85
7329 7699 4.410099 ACTGGGAGCATTTTTCATCAGAA 58.590 39.130 0.00 0.00 0.00 3.02
7330 7700 4.038271 ACTGGGAGCATTTTTCATCAGA 57.962 40.909 0.00 0.00 0.00 3.27
7331 7701 4.796038 AACTGGGAGCATTTTTCATCAG 57.204 40.909 0.00 0.00 0.00 2.90
7332 7702 4.588106 TCAAACTGGGAGCATTTTTCATCA 59.412 37.500 0.00 0.00 0.00 3.07
7333 7703 5.138125 TCAAACTGGGAGCATTTTTCATC 57.862 39.130 0.00 0.00 0.00 2.92
7334 7704 5.143376 CTCAAACTGGGAGCATTTTTCAT 57.857 39.130 0.00 0.00 0.00 2.57
7335 7705 4.589216 CTCAAACTGGGAGCATTTTTCA 57.411 40.909 0.00 0.00 0.00 2.69
7344 7714 0.035458 AAGGACGCTCAAACTGGGAG 59.965 55.000 0.00 0.00 35.47 4.30
7345 7715 0.472471 AAAGGACGCTCAAACTGGGA 59.528 50.000 0.00 0.00 0.00 4.37
7346 7716 1.318576 AAAAGGACGCTCAAACTGGG 58.681 50.000 0.00 0.00 0.00 4.45
7347 7717 3.609409 GCTAAAAAGGACGCTCAAACTGG 60.609 47.826 0.00 0.00 0.00 4.00
7348 7718 3.555518 GCTAAAAAGGACGCTCAAACTG 58.444 45.455 0.00 0.00 0.00 3.16
7349 7719 2.552743 GGCTAAAAAGGACGCTCAAACT 59.447 45.455 0.00 0.00 0.00 2.66
7350 7720 2.664698 CGGCTAAAAAGGACGCTCAAAC 60.665 50.000 0.00 0.00 0.00 2.93
7351 7721 1.533731 CGGCTAAAAAGGACGCTCAAA 59.466 47.619 0.00 0.00 0.00 2.69
7352 7722 1.153353 CGGCTAAAAAGGACGCTCAA 58.847 50.000 0.00 0.00 0.00 3.02
7353 7723 0.319083 TCGGCTAAAAAGGACGCTCA 59.681 50.000 0.00 0.00 34.88 4.26
7354 7724 1.653151 ATCGGCTAAAAAGGACGCTC 58.347 50.000 0.00 0.00 34.88 5.03
7355 7725 2.167900 AGTATCGGCTAAAAAGGACGCT 59.832 45.455 0.00 0.00 34.88 5.07
7356 7726 2.538861 GAGTATCGGCTAAAAAGGACGC 59.461 50.000 0.00 0.00 34.88 5.19
7357 7727 3.121544 GGAGTATCGGCTAAAAAGGACG 58.878 50.000 0.00 0.00 34.37 4.79
7358 7728 4.133013 TGGAGTATCGGCTAAAAAGGAC 57.867 45.455 0.00 0.00 34.37 3.85
7359 7729 4.829872 TTGGAGTATCGGCTAAAAAGGA 57.170 40.909 0.00 0.00 34.37 3.36
7360 7730 6.540914 TGTAATTGGAGTATCGGCTAAAAAGG 59.459 38.462 0.00 0.00 34.37 3.11
7361 7731 7.548196 TGTAATTGGAGTATCGGCTAAAAAG 57.452 36.000 0.00 0.00 34.37 2.27
7362 7732 7.012894 CCATGTAATTGGAGTATCGGCTAAAAA 59.987 37.037 0.00 0.00 39.25 1.94
7363 7733 6.485313 CCATGTAATTGGAGTATCGGCTAAAA 59.515 38.462 0.00 0.00 39.25 1.52
7364 7734 5.995282 CCATGTAATTGGAGTATCGGCTAAA 59.005 40.000 0.00 0.00 39.25 1.85
7365 7735 5.071250 ACCATGTAATTGGAGTATCGGCTAA 59.929 40.000 0.00 0.00 39.25 3.09
7366 7736 4.591498 ACCATGTAATTGGAGTATCGGCTA 59.409 41.667 0.00 0.00 39.25 3.93
7367 7737 3.391296 ACCATGTAATTGGAGTATCGGCT 59.609 43.478 0.00 0.00 39.25 5.52
7368 7738 3.740115 ACCATGTAATTGGAGTATCGGC 58.260 45.455 0.00 0.00 39.25 5.54
7369 7739 7.386851 AGAATACCATGTAATTGGAGTATCGG 58.613 38.462 0.00 0.00 39.25 4.18
7370 7740 8.833231 AAGAATACCATGTAATTGGAGTATCG 57.167 34.615 0.00 0.00 39.25 2.92
7372 7742 8.850156 GCAAAGAATACCATGTAATTGGAGTAT 58.150 33.333 0.00 0.00 39.25 2.12
7373 7743 8.052748 AGCAAAGAATACCATGTAATTGGAGTA 58.947 33.333 0.00 0.00 39.25 2.59
7374 7744 6.891908 AGCAAAGAATACCATGTAATTGGAGT 59.108 34.615 0.00 0.00 39.25 3.85
7375 7745 7.338800 AGCAAAGAATACCATGTAATTGGAG 57.661 36.000 0.00 0.00 39.25 3.86
7376 7746 7.716799 AAGCAAAGAATACCATGTAATTGGA 57.283 32.000 0.00 0.00 39.25 3.53
7377 7747 9.868277 TTAAAGCAAAGAATACCATGTAATTGG 57.132 29.630 0.00 0.00 42.82 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.