Multiple sequence alignment - TraesCS6D01G315700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G315700 chr6D 100.000 3436 0 0 1 3436 423817726 423814291 0.000000e+00 6346
1 TraesCS6D01G315700 chr6A 93.514 2760 86 22 714 3436 568518082 568515379 0.000000e+00 4019
2 TraesCS6D01G315700 chr6A 95.000 220 10 1 499 717 568519699 568519480 9.130000e-91 344
3 TraesCS6D01G315700 chr6A 91.133 203 13 4 298 499 146739745 146739547 1.570000e-68 270
4 TraesCS6D01G315700 chr6B 95.379 2099 51 19 711 2793 639535059 639532991 0.000000e+00 3297
5 TraesCS6D01G315700 chr6B 89.978 459 21 13 2828 3267 639532988 639532536 1.380000e-158 569
6 TraesCS6D01G315700 chr6B 98.925 186 2 0 499 684 639535242 639535057 1.980000e-87 333
7 TraesCS6D01G315700 chr6B 91.031 223 15 5 1 221 15268241 15268022 2.590000e-76 296
8 TraesCS6D01G315700 chr6B 91.477 176 4 3 3261 3436 639531977 639531813 7.420000e-57 231
9 TraesCS6D01G315700 chr4A 95.817 502 19 2 1 500 73935882 73936383 0.000000e+00 809
10 TraesCS6D01G315700 chr4A 92.386 197 9 2 305 499 312727723 312727531 3.380000e-70 276
11 TraesCS6D01G315700 chr3A 91.614 477 21 8 1 476 239362401 239362859 2.890000e-180 641
12 TraesCS6D01G315700 chr4D 91.864 295 22 2 1 293 259052527 259052233 8.870000e-111 411
13 TraesCS6D01G315700 chr1A 95.477 199 7 1 305 501 504405829 504406027 1.990000e-82 316
14 TraesCS6D01G315700 chr1B 92.694 219 14 2 1 218 620451357 620451574 7.160000e-82 315
15 TraesCS6D01G315700 chr7B 94.472 199 10 1 303 500 71130932 71131130 4.310000e-79 305
16 TraesCS6D01G315700 chr7B 92.361 144 11 0 1374 1517 76904322 76904465 4.490000e-49 206
17 TraesCS6D01G315700 chr5A 94.416 197 11 0 303 499 678672031 678671835 1.550000e-78 303
18 TraesCS6D01G315700 chr2B 91.441 222 18 1 1 221 258459608 258459387 1.550000e-78 303
19 TraesCS6D01G315700 chr2B 91.045 134 12 0 1385 1518 653017848 653017981 7.570000e-42 182
20 TraesCS6D01G315700 chr2D 94.388 196 11 0 303 498 327743196 327743001 5.570000e-78 302
21 TraesCS6D01G315700 chr2D 91.045 134 12 0 1385 1518 546209815 546209948 7.570000e-42 182
22 TraesCS6D01G315700 chr7A 93.401 197 7 2 305 499 655413114 655412922 1.560000e-73 287
23 TraesCS6D01G315700 chr7A 94.444 144 8 0 1374 1517 121056642 121056785 4.460000e-54 222
24 TraesCS6D01G315700 chr5B 91.919 198 14 2 303 499 107207927 107208123 3.380000e-70 276
25 TraesCS6D01G315700 chr7D 95.139 144 7 0 1374 1517 117133156 117133299 9.590000e-56 228
26 TraesCS6D01G315700 chr2A 91.045 134 12 0 1385 1518 687050274 687050407 7.570000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G315700 chr6D 423814291 423817726 3435 True 6346.0 6346 100.00000 1 3436 1 chr6D.!!$R1 3435
1 TraesCS6D01G315700 chr6A 568515379 568519699 4320 True 2181.5 4019 94.25700 499 3436 2 chr6A.!!$R2 2937
2 TraesCS6D01G315700 chr6B 639531813 639535242 3429 True 1107.5 3297 93.93975 499 3436 4 chr6B.!!$R2 2937
3 TraesCS6D01G315700 chr4A 73935882 73936383 501 False 809.0 809 95.81700 1 500 1 chr4A.!!$F1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
88 89 0.107066 CTACATCATGCTGCCCACCA 60.107 55.0 0.00 0.0 0.00 4.17 F
261 262 0.182537 CACCCAGGGTCAAACTCACA 59.817 55.0 8.79 0.0 31.02 3.58 F
333 334 0.315568 GTTGTGGGCGTGGCATTTTA 59.684 50.0 0.00 0.0 0.00 1.52 F
335 336 0.538516 TGTGGGCGTGGCATTTTAGT 60.539 50.0 0.00 0.0 0.00 2.24 F
336 337 0.601057 GTGGGCGTGGCATTTTAGTT 59.399 50.0 0.00 0.0 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2014 3660 0.037975 GGAAGAGCGACGTTGGGTTA 60.038 55.000 4.64 0.0 0.00 2.85 R
2065 3720 1.065928 GGACAGGTCGATGGCGTAG 59.934 63.158 0.00 0.0 38.98 3.51 R
2354 4013 5.542779 TCAAAGTGTAAGAGAAGAAGAGGC 58.457 41.667 0.00 0.0 0.00 4.70 R
2355 4014 7.713073 AGTTTCAAAGTGTAAGAGAAGAAGAGG 59.287 37.037 0.00 0.0 0.00 3.69 R
2459 4121 0.436531 CTCGTTGCAGCTTCGTTCTC 59.563 55.000 0.00 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 6.257849 TCTGCAGAATTCGCGAATAAGTAAAT 59.742 34.615 32.67 16.65 0.00 1.40
51 52 8.522542 AGTAAATCCTATATAGTGGATCGGAC 57.477 38.462 8.92 5.73 41.76 4.79
52 53 8.114102 AGTAAATCCTATATAGTGGATCGGACA 58.886 37.037 8.92 0.00 41.76 4.02
53 54 7.979786 AAATCCTATATAGTGGATCGGACAT 57.020 36.000 8.92 0.00 41.76 3.06
54 55 7.979786 AATCCTATATAGTGGATCGGACATT 57.020 36.000 8.92 0.00 41.76 2.71
55 56 7.589958 ATCCTATATAGTGGATCGGACATTC 57.410 40.000 8.92 0.00 38.60 2.67
56 57 6.732487 TCCTATATAGTGGATCGGACATTCT 58.268 40.000 8.92 0.00 0.00 2.40
57 58 6.603599 TCCTATATAGTGGATCGGACATTCTG 59.396 42.308 8.92 0.00 0.00 3.02
58 59 6.378564 CCTATATAGTGGATCGGACATTCTGT 59.621 42.308 8.92 0.00 0.00 3.41
59 60 6.672266 ATATAGTGGATCGGACATTCTGTT 57.328 37.500 0.00 0.00 0.00 3.16
60 61 3.703001 AGTGGATCGGACATTCTGTTT 57.297 42.857 0.00 0.00 0.00 2.83
61 62 3.600388 AGTGGATCGGACATTCTGTTTC 58.400 45.455 0.00 0.00 0.00 2.78
62 63 2.678336 GTGGATCGGACATTCTGTTTCC 59.322 50.000 0.00 0.00 31.40 3.13
63 64 2.304470 TGGATCGGACATTCTGTTTCCA 59.696 45.455 5.74 5.74 35.41 3.53
64 65 2.678336 GGATCGGACATTCTGTTTCCAC 59.322 50.000 0.00 0.00 31.23 4.02
65 66 3.600388 GATCGGACATTCTGTTTCCACT 58.400 45.455 0.00 0.00 0.00 4.00
66 67 3.485463 TCGGACATTCTGTTTCCACTT 57.515 42.857 0.00 0.00 0.00 3.16
67 68 3.399330 TCGGACATTCTGTTTCCACTTC 58.601 45.455 0.00 0.00 0.00 3.01
68 69 3.071023 TCGGACATTCTGTTTCCACTTCT 59.929 43.478 0.00 0.00 0.00 2.85
69 70 3.433615 CGGACATTCTGTTTCCACTTCTC 59.566 47.826 0.00 0.00 0.00 2.87
70 71 4.646572 GGACATTCTGTTTCCACTTCTCT 58.353 43.478 0.00 0.00 0.00 3.10
71 72 5.566826 CGGACATTCTGTTTCCACTTCTCTA 60.567 44.000 0.00 0.00 0.00 2.43
72 73 5.639931 GGACATTCTGTTTCCACTTCTCTAC 59.360 44.000 0.00 0.00 0.00 2.59
73 74 6.174720 ACATTCTGTTTCCACTTCTCTACA 57.825 37.500 0.00 0.00 0.00 2.74
74 75 6.773638 ACATTCTGTTTCCACTTCTCTACAT 58.226 36.000 0.00 0.00 0.00 2.29
75 76 6.876257 ACATTCTGTTTCCACTTCTCTACATC 59.124 38.462 0.00 0.00 0.00 3.06
76 77 6.419484 TTCTGTTTCCACTTCTCTACATCA 57.581 37.500 0.00 0.00 0.00 3.07
77 78 6.611613 TCTGTTTCCACTTCTCTACATCAT 57.388 37.500 0.00 0.00 0.00 2.45
78 79 6.401394 TCTGTTTCCACTTCTCTACATCATG 58.599 40.000 0.00 0.00 0.00 3.07
79 80 4.937620 TGTTTCCACTTCTCTACATCATGC 59.062 41.667 0.00 0.00 0.00 4.06
80 81 5.181748 GTTTCCACTTCTCTACATCATGCT 58.818 41.667 0.00 0.00 0.00 3.79
81 82 4.397481 TCCACTTCTCTACATCATGCTG 57.603 45.455 0.00 0.00 0.00 4.41
82 83 2.871022 CCACTTCTCTACATCATGCTGC 59.129 50.000 0.00 0.00 0.00 5.25
83 84 2.871022 CACTTCTCTACATCATGCTGCC 59.129 50.000 0.00 0.00 0.00 4.85
84 85 2.158842 ACTTCTCTACATCATGCTGCCC 60.159 50.000 0.00 0.00 0.00 5.36
85 86 1.499368 TCTCTACATCATGCTGCCCA 58.501 50.000 0.00 0.00 0.00 5.36
86 87 1.139654 TCTCTACATCATGCTGCCCAC 59.860 52.381 0.00 0.00 0.00 4.61
87 88 0.181114 TCTACATCATGCTGCCCACC 59.819 55.000 0.00 0.00 0.00 4.61
88 89 0.107066 CTACATCATGCTGCCCACCA 60.107 55.000 0.00 0.00 0.00 4.17
89 90 0.330941 TACATCATGCTGCCCACCAA 59.669 50.000 0.00 0.00 0.00 3.67
90 91 0.968901 ACATCATGCTGCCCACCAAG 60.969 55.000 0.00 0.00 0.00 3.61
91 92 2.056223 ATCATGCTGCCCACCAAGC 61.056 57.895 0.00 0.00 0.00 4.01
92 93 2.791613 ATCATGCTGCCCACCAAGCA 62.792 55.000 0.00 0.00 41.73 3.91
93 94 2.038329 ATGCTGCCCACCAAGCAT 59.962 55.556 4.37 4.37 42.37 3.79
94 95 2.355986 ATGCTGCCCACCAAGCATG 61.356 57.895 9.22 0.00 44.99 4.06
110 111 6.005583 CAAGCATGGATATTCACATGTACC 57.994 41.667 0.00 0.00 44.74 3.34
111 112 4.318332 AGCATGGATATTCACATGTACCG 58.682 43.478 0.00 0.00 44.74 4.02
112 113 4.040339 AGCATGGATATTCACATGTACCGA 59.960 41.667 0.00 0.00 44.74 4.69
113 114 4.937620 GCATGGATATTCACATGTACCGAT 59.062 41.667 0.00 0.00 44.74 4.18
114 115 5.412594 GCATGGATATTCACATGTACCGATT 59.587 40.000 0.00 0.00 44.74 3.34
115 116 6.072508 GCATGGATATTCACATGTACCGATTT 60.073 38.462 0.00 0.00 44.74 2.17
116 117 6.859420 TGGATATTCACATGTACCGATTTG 57.141 37.500 0.00 0.00 0.00 2.32
117 118 6.587273 TGGATATTCACATGTACCGATTTGA 58.413 36.000 0.00 0.00 0.00 2.69
118 119 7.223584 TGGATATTCACATGTACCGATTTGAT 58.776 34.615 0.00 0.00 0.00 2.57
119 120 7.719193 TGGATATTCACATGTACCGATTTGATT 59.281 33.333 0.00 0.00 0.00 2.57
120 121 8.017373 GGATATTCACATGTACCGATTTGATTG 58.983 37.037 0.00 0.00 0.00 2.67
121 122 8.675705 ATATTCACATGTACCGATTTGATTGA 57.324 30.769 0.00 0.00 0.00 2.57
122 123 7.572523 ATTCACATGTACCGATTTGATTGAT 57.427 32.000 0.00 0.00 0.00 2.57
123 124 6.603237 TCACATGTACCGATTTGATTGATC 57.397 37.500 0.00 0.00 0.00 2.92
124 125 5.527214 TCACATGTACCGATTTGATTGATCC 59.473 40.000 0.00 0.00 0.00 3.36
125 126 5.528690 CACATGTACCGATTTGATTGATCCT 59.471 40.000 0.00 0.00 0.00 3.24
126 127 6.705825 CACATGTACCGATTTGATTGATCCTA 59.294 38.462 0.00 0.00 0.00 2.94
127 128 7.388776 CACATGTACCGATTTGATTGATCCTAT 59.611 37.037 0.00 0.00 0.00 2.57
128 129 7.388776 ACATGTACCGATTTGATTGATCCTATG 59.611 37.037 0.00 0.00 0.00 2.23
129 130 6.826668 TGTACCGATTTGATTGATCCTATGT 58.173 36.000 0.00 0.00 0.00 2.29
130 131 6.705825 TGTACCGATTTGATTGATCCTATGTG 59.294 38.462 0.00 0.00 0.00 3.21
131 132 4.516698 ACCGATTTGATTGATCCTATGTGC 59.483 41.667 0.00 0.00 0.00 4.57
132 133 4.758674 CCGATTTGATTGATCCTATGTGCT 59.241 41.667 0.00 0.00 0.00 4.40
133 134 5.934043 CCGATTTGATTGATCCTATGTGCTA 59.066 40.000 0.00 0.00 0.00 3.49
134 135 6.128445 CCGATTTGATTGATCCTATGTGCTAC 60.128 42.308 0.00 0.00 0.00 3.58
135 136 6.648310 CGATTTGATTGATCCTATGTGCTACT 59.352 38.462 0.00 0.00 0.00 2.57
136 137 7.172190 CGATTTGATTGATCCTATGTGCTACTT 59.828 37.037 0.00 0.00 0.00 2.24
137 138 7.792374 TTTGATTGATCCTATGTGCTACTTC 57.208 36.000 0.00 0.00 0.00 3.01
138 139 6.484364 TGATTGATCCTATGTGCTACTTCA 57.516 37.500 0.00 0.00 0.00 3.02
139 140 6.283694 TGATTGATCCTATGTGCTACTTCAC 58.716 40.000 0.00 0.00 37.48 3.18
149 150 5.089970 TGTGCTACTTCACATTATCAGCT 57.910 39.130 0.00 0.00 41.57 4.24
150 151 6.220726 TGTGCTACTTCACATTATCAGCTA 57.779 37.500 0.00 0.00 41.57 3.32
151 152 6.639563 TGTGCTACTTCACATTATCAGCTAA 58.360 36.000 0.00 0.00 41.57 3.09
152 153 6.758416 TGTGCTACTTCACATTATCAGCTAAG 59.242 38.462 0.00 0.00 41.57 2.18
153 154 6.758886 GTGCTACTTCACATTATCAGCTAAGT 59.241 38.462 0.00 0.00 36.97 2.24
154 155 7.278868 GTGCTACTTCACATTATCAGCTAAGTT 59.721 37.037 0.00 0.00 36.97 2.66
155 156 7.824289 TGCTACTTCACATTATCAGCTAAGTTT 59.176 33.333 0.00 0.00 0.00 2.66
156 157 9.314321 GCTACTTCACATTATCAGCTAAGTTTA 57.686 33.333 0.00 0.00 0.00 2.01
166 167 9.765795 ATTATCAGCTAAGTTTATACACTGTCC 57.234 33.333 0.00 0.00 0.00 4.02
167 168 5.974108 TCAGCTAAGTTTATACACTGTCCC 58.026 41.667 0.00 0.00 0.00 4.46
168 169 5.720041 TCAGCTAAGTTTATACACTGTCCCT 59.280 40.000 0.00 0.00 0.00 4.20
169 170 6.893554 TCAGCTAAGTTTATACACTGTCCCTA 59.106 38.462 0.00 0.00 0.00 3.53
170 171 7.398047 TCAGCTAAGTTTATACACTGTCCCTAA 59.602 37.037 0.00 0.00 0.00 2.69
171 172 8.038944 CAGCTAAGTTTATACACTGTCCCTAAA 58.961 37.037 0.00 0.00 0.00 1.85
172 173 8.258708 AGCTAAGTTTATACACTGTCCCTAAAG 58.741 37.037 0.00 0.00 0.00 1.85
173 174 7.494952 GCTAAGTTTATACACTGTCCCTAAAGG 59.505 40.741 0.00 0.00 0.00 3.11
174 175 5.742063 AGTTTATACACTGTCCCTAAAGGC 58.258 41.667 0.00 0.00 34.51 4.35
175 176 4.765813 TTATACACTGTCCCTAAAGGCC 57.234 45.455 0.00 0.00 34.51 5.19
176 177 2.337359 TACACTGTCCCTAAAGGCCT 57.663 50.000 0.00 0.00 34.51 5.19
177 178 2.337359 ACACTGTCCCTAAAGGCCTA 57.663 50.000 5.16 0.00 34.51 3.93
178 179 2.627933 ACACTGTCCCTAAAGGCCTAA 58.372 47.619 5.16 0.00 34.51 2.69
179 180 2.572104 ACACTGTCCCTAAAGGCCTAAG 59.428 50.000 5.16 6.91 34.51 2.18
180 181 1.560146 ACTGTCCCTAAAGGCCTAAGC 59.440 52.381 5.16 0.00 38.76 3.09
192 193 1.680338 GCCTAAGCCCAAATCGATGT 58.320 50.000 0.00 0.00 0.00 3.06
193 194 2.024414 GCCTAAGCCCAAATCGATGTT 58.976 47.619 0.00 0.00 0.00 2.71
194 195 3.211045 GCCTAAGCCCAAATCGATGTTA 58.789 45.455 0.00 0.00 0.00 2.41
195 196 3.630312 GCCTAAGCCCAAATCGATGTTAA 59.370 43.478 0.00 0.00 0.00 2.01
196 197 4.278419 GCCTAAGCCCAAATCGATGTTAAT 59.722 41.667 0.00 0.00 0.00 1.40
197 198 5.221244 GCCTAAGCCCAAATCGATGTTAATT 60.221 40.000 0.00 0.00 0.00 1.40
198 199 6.438763 CCTAAGCCCAAATCGATGTTAATTC 58.561 40.000 0.00 0.00 0.00 2.17
199 200 4.918810 AGCCCAAATCGATGTTAATTCC 57.081 40.909 0.00 0.00 0.00 3.01
200 201 3.636764 AGCCCAAATCGATGTTAATTCCC 59.363 43.478 0.00 0.00 0.00 3.97
201 202 3.636764 GCCCAAATCGATGTTAATTCCCT 59.363 43.478 0.00 0.00 0.00 4.20
202 203 4.499696 GCCCAAATCGATGTTAATTCCCTG 60.500 45.833 0.00 0.00 0.00 4.45
203 204 4.037923 CCCAAATCGATGTTAATTCCCTGG 59.962 45.833 0.00 0.00 0.00 4.45
204 205 4.037923 CCAAATCGATGTTAATTCCCTGGG 59.962 45.833 6.33 6.33 0.00 4.45
205 206 2.341846 TCGATGTTAATTCCCTGGGC 57.658 50.000 8.22 0.00 0.00 5.36
206 207 1.562008 TCGATGTTAATTCCCTGGGCA 59.438 47.619 8.22 0.00 0.00 5.36
207 208 2.025793 TCGATGTTAATTCCCTGGGCAA 60.026 45.455 8.22 3.89 0.00 4.52
208 209 2.958355 CGATGTTAATTCCCTGGGCAAT 59.042 45.455 8.22 6.23 0.00 3.56
209 210 3.384467 CGATGTTAATTCCCTGGGCAATT 59.616 43.478 19.86 19.86 0.00 2.32
210 211 4.141959 CGATGTTAATTCCCTGGGCAATTT 60.142 41.667 20.67 10.05 0.00 1.82
211 212 5.626578 CGATGTTAATTCCCTGGGCAATTTT 60.627 40.000 20.67 8.69 0.00 1.82
212 213 5.574970 TGTTAATTCCCTGGGCAATTTTT 57.425 34.783 20.67 2.29 0.00 1.94
231 232 5.616488 TTTTTCTTCTAATACACCGTGGC 57.384 39.130 3.03 0.00 0.00 5.01
232 233 3.965379 TTCTTCTAATACACCGTGGCA 57.035 42.857 3.03 0.00 0.00 4.92
233 234 3.965379 TCTTCTAATACACCGTGGCAA 57.035 42.857 3.03 0.00 0.00 4.52
234 235 4.274602 TCTTCTAATACACCGTGGCAAA 57.725 40.909 3.03 0.00 0.00 3.68
235 236 4.643463 TCTTCTAATACACCGTGGCAAAA 58.357 39.130 3.03 0.00 0.00 2.44
236 237 5.064558 TCTTCTAATACACCGTGGCAAAAA 58.935 37.500 3.03 0.00 0.00 1.94
237 238 5.708230 TCTTCTAATACACCGTGGCAAAAAT 59.292 36.000 3.03 0.00 0.00 1.82
238 239 5.968528 TCTAATACACCGTGGCAAAAATT 57.031 34.783 3.03 0.00 0.00 1.82
239 240 6.334102 TCTAATACACCGTGGCAAAAATTT 57.666 33.333 3.03 0.00 0.00 1.82
240 241 7.450124 TCTAATACACCGTGGCAAAAATTTA 57.550 32.000 3.03 0.00 0.00 1.40
241 242 8.057536 TCTAATACACCGTGGCAAAAATTTAT 57.942 30.769 3.03 0.00 0.00 1.40
242 243 8.185505 TCTAATACACCGTGGCAAAAATTTATC 58.814 33.333 3.03 0.00 0.00 1.75
243 244 4.592485 ACACCGTGGCAAAAATTTATCA 57.408 36.364 3.03 0.00 0.00 2.15
244 245 4.303282 ACACCGTGGCAAAAATTTATCAC 58.697 39.130 3.03 0.00 0.00 3.06
245 246 3.677596 CACCGTGGCAAAAATTTATCACC 59.322 43.478 0.00 0.00 0.00 4.02
246 247 3.258228 CCGTGGCAAAAATTTATCACCC 58.742 45.455 0.00 0.00 0.00 4.61
247 248 3.306364 CCGTGGCAAAAATTTATCACCCA 60.306 43.478 0.00 0.00 0.00 4.51
248 249 3.925913 CGTGGCAAAAATTTATCACCCAG 59.074 43.478 0.00 0.00 0.00 4.45
249 250 4.252878 GTGGCAAAAATTTATCACCCAGG 58.747 43.478 0.00 0.00 0.00 4.45
250 251 3.262915 TGGCAAAAATTTATCACCCAGGG 59.737 43.478 2.85 2.85 0.00 4.45
251 252 3.263170 GGCAAAAATTTATCACCCAGGGT 59.737 43.478 4.76 4.76 35.62 4.34
252 253 4.503910 GCAAAAATTTATCACCCAGGGTC 58.496 43.478 8.79 0.00 31.02 4.46
253 254 4.020662 GCAAAAATTTATCACCCAGGGTCA 60.021 41.667 8.79 0.00 31.02 4.02
254 255 5.512232 GCAAAAATTTATCACCCAGGGTCAA 60.512 40.000 8.79 0.00 31.02 3.18
255 256 6.529220 CAAAAATTTATCACCCAGGGTCAAA 58.471 36.000 8.79 10.02 31.02 2.69
256 257 5.738619 AAATTTATCACCCAGGGTCAAAC 57.261 39.130 8.79 0.00 31.02 2.93
257 258 4.675063 ATTTATCACCCAGGGTCAAACT 57.325 40.909 8.79 0.00 31.02 2.66
258 259 3.713826 TTATCACCCAGGGTCAAACTC 57.286 47.619 8.79 0.00 31.02 3.01
259 260 1.444933 ATCACCCAGGGTCAAACTCA 58.555 50.000 8.79 0.00 31.02 3.41
260 261 0.472471 TCACCCAGGGTCAAACTCAC 59.528 55.000 8.79 0.00 31.02 3.51
261 262 0.182537 CACCCAGGGTCAAACTCACA 59.817 55.000 8.79 0.00 31.02 3.58
262 263 0.474184 ACCCAGGGTCAAACTCACAG 59.526 55.000 4.76 0.00 0.00 3.66
263 264 0.474184 CCCAGGGTCAAACTCACAGT 59.526 55.000 0.00 0.00 0.00 3.55
264 265 1.697432 CCCAGGGTCAAACTCACAGTA 59.303 52.381 0.00 0.00 0.00 2.74
265 266 2.550208 CCCAGGGTCAAACTCACAGTAC 60.550 54.545 0.00 0.00 0.00 2.73
266 267 2.368875 CCAGGGTCAAACTCACAGTACT 59.631 50.000 0.00 0.00 0.00 2.73
267 268 3.181454 CCAGGGTCAAACTCACAGTACTT 60.181 47.826 0.00 0.00 0.00 2.24
268 269 4.058817 CAGGGTCAAACTCACAGTACTTC 58.941 47.826 0.00 0.00 0.00 3.01
269 270 3.709653 AGGGTCAAACTCACAGTACTTCA 59.290 43.478 0.00 0.00 0.00 3.02
270 271 3.808174 GGGTCAAACTCACAGTACTTCAC 59.192 47.826 0.00 0.00 0.00 3.18
271 272 4.443034 GGGTCAAACTCACAGTACTTCACT 60.443 45.833 0.00 0.00 38.32 3.41
272 273 5.116882 GGTCAAACTCACAGTACTTCACTT 58.883 41.667 0.00 0.00 34.26 3.16
273 274 5.585047 GGTCAAACTCACAGTACTTCACTTT 59.415 40.000 0.00 0.00 34.26 2.66
274 275 6.759827 GGTCAAACTCACAGTACTTCACTTTA 59.240 38.462 0.00 0.00 34.26 1.85
275 276 7.441458 GGTCAAACTCACAGTACTTCACTTTAT 59.559 37.037 0.00 0.00 34.26 1.40
276 277 9.472361 GTCAAACTCACAGTACTTCACTTTATA 57.528 33.333 0.00 0.00 34.26 0.98
277 278 9.472361 TCAAACTCACAGTACTTCACTTTATAC 57.528 33.333 0.00 0.00 34.26 1.47
278 279 8.709646 CAAACTCACAGTACTTCACTTTATACC 58.290 37.037 0.00 0.00 34.26 2.73
279 280 7.778185 ACTCACAGTACTTCACTTTATACCT 57.222 36.000 0.00 0.00 34.26 3.08
280 281 8.191534 ACTCACAGTACTTCACTTTATACCTT 57.808 34.615 0.00 0.00 34.26 3.50
281 282 8.305317 ACTCACAGTACTTCACTTTATACCTTC 58.695 37.037 0.00 0.00 34.26 3.46
282 283 8.185506 TCACAGTACTTCACTTTATACCTTCA 57.814 34.615 0.00 0.00 34.26 3.02
283 284 8.644216 TCACAGTACTTCACTTTATACCTTCAA 58.356 33.333 0.00 0.00 34.26 2.69
284 285 9.436957 CACAGTACTTCACTTTATACCTTCAAT 57.563 33.333 0.00 0.00 34.26 2.57
285 286 9.436957 ACAGTACTTCACTTTATACCTTCAATG 57.563 33.333 0.00 0.00 34.26 2.82
286 287 8.391106 CAGTACTTCACTTTATACCTTCAATGC 58.609 37.037 0.00 0.00 34.26 3.56
287 288 8.322091 AGTACTTCACTTTATACCTTCAATGCT 58.678 33.333 0.00 0.00 31.59 3.79
288 289 8.947115 GTACTTCACTTTATACCTTCAATGCTT 58.053 33.333 0.00 0.00 0.00 3.91
289 290 8.045176 ACTTCACTTTATACCTTCAATGCTTC 57.955 34.615 0.00 0.00 0.00 3.86
290 291 7.885399 ACTTCACTTTATACCTTCAATGCTTCT 59.115 33.333 0.00 0.00 0.00 2.85
291 292 9.383519 CTTCACTTTATACCTTCAATGCTTCTA 57.616 33.333 0.00 0.00 0.00 2.10
292 293 9.733556 TTCACTTTATACCTTCAATGCTTCTAA 57.266 29.630 0.00 0.00 0.00 2.10
293 294 9.905713 TCACTTTATACCTTCAATGCTTCTAAT 57.094 29.630 0.00 0.00 0.00 1.73
298 299 9.555727 TTATACCTTCAATGCTTCTAATACACC 57.444 33.333 0.00 0.00 0.00 4.16
299 300 6.067217 ACCTTCAATGCTTCTAATACACCT 57.933 37.500 0.00 0.00 0.00 4.00
300 301 7.195374 ACCTTCAATGCTTCTAATACACCTA 57.805 36.000 0.00 0.00 0.00 3.08
301 302 7.048512 ACCTTCAATGCTTCTAATACACCTAC 58.951 38.462 0.00 0.00 0.00 3.18
302 303 6.483640 CCTTCAATGCTTCTAATACACCTACC 59.516 42.308 0.00 0.00 0.00 3.18
303 304 5.597806 TCAATGCTTCTAATACACCTACCG 58.402 41.667 0.00 0.00 0.00 4.02
304 305 5.361571 TCAATGCTTCTAATACACCTACCGA 59.638 40.000 0.00 0.00 0.00 4.69
305 306 6.041637 TCAATGCTTCTAATACACCTACCGAT 59.958 38.462 0.00 0.00 0.00 4.18
306 307 5.196341 TGCTTCTAATACACCTACCGATG 57.804 43.478 0.00 0.00 0.00 3.84
307 308 3.988517 GCTTCTAATACACCTACCGATGC 59.011 47.826 0.00 0.00 0.00 3.91
308 309 4.262079 GCTTCTAATACACCTACCGATGCT 60.262 45.833 0.00 0.00 0.00 3.79
309 310 5.048224 GCTTCTAATACACCTACCGATGCTA 60.048 44.000 0.00 0.00 0.00 3.49
310 311 6.350277 GCTTCTAATACACCTACCGATGCTAT 60.350 42.308 0.00 0.00 0.00 2.97
311 312 7.148120 GCTTCTAATACACCTACCGATGCTATA 60.148 40.741 0.00 0.00 0.00 1.31
312 313 8.818622 TTCTAATACACCTACCGATGCTATAT 57.181 34.615 0.00 0.00 0.00 0.86
313 314 8.447924 TCTAATACACCTACCGATGCTATATC 57.552 38.462 0.00 0.00 0.00 1.63
314 315 5.752892 ATACACCTACCGATGCTATATCG 57.247 43.478 2.53 2.53 40.86 2.92
315 316 3.418995 ACACCTACCGATGCTATATCGT 58.581 45.455 8.28 0.65 39.67 3.73
316 317 3.825014 ACACCTACCGATGCTATATCGTT 59.175 43.478 8.28 0.00 39.67 3.85
317 318 4.166523 CACCTACCGATGCTATATCGTTG 58.833 47.826 8.28 0.00 39.67 4.10
318 319 3.825014 ACCTACCGATGCTATATCGTTGT 59.175 43.478 8.28 3.32 39.67 3.32
319 320 4.166523 CCTACCGATGCTATATCGTTGTG 58.833 47.826 8.28 0.00 39.67 3.33
320 321 3.026630 ACCGATGCTATATCGTTGTGG 57.973 47.619 8.28 0.00 39.67 4.17
321 322 2.288825 ACCGATGCTATATCGTTGTGGG 60.289 50.000 8.28 0.00 39.67 4.61
322 323 1.726791 CGATGCTATATCGTTGTGGGC 59.273 52.381 0.00 0.00 36.84 5.36
323 324 1.726791 GATGCTATATCGTTGTGGGCG 59.273 52.381 0.00 0.00 0.00 6.13
324 325 0.462375 TGCTATATCGTTGTGGGCGT 59.538 50.000 0.00 0.00 0.00 5.68
325 326 0.859232 GCTATATCGTTGTGGGCGTG 59.141 55.000 0.00 0.00 0.00 5.34
326 327 1.497991 CTATATCGTTGTGGGCGTGG 58.502 55.000 0.00 0.00 0.00 4.94
327 328 0.531090 TATATCGTTGTGGGCGTGGC 60.531 55.000 0.00 0.00 0.00 5.01
328 329 2.529454 ATATCGTTGTGGGCGTGGCA 62.529 55.000 0.00 0.00 0.00 4.92
329 330 2.529454 TATCGTTGTGGGCGTGGCAT 62.529 55.000 0.00 0.00 0.00 4.40
330 331 3.669344 CGTTGTGGGCGTGGCATT 61.669 61.111 0.00 0.00 0.00 3.56
331 332 2.733945 GTTGTGGGCGTGGCATTT 59.266 55.556 0.00 0.00 0.00 2.32
332 333 1.068921 GTTGTGGGCGTGGCATTTT 59.931 52.632 0.00 0.00 0.00 1.82
333 334 0.315568 GTTGTGGGCGTGGCATTTTA 59.684 50.000 0.00 0.00 0.00 1.52
334 335 0.600557 TTGTGGGCGTGGCATTTTAG 59.399 50.000 0.00 0.00 0.00 1.85
335 336 0.538516 TGTGGGCGTGGCATTTTAGT 60.539 50.000 0.00 0.00 0.00 2.24
336 337 0.601057 GTGGGCGTGGCATTTTAGTT 59.399 50.000 0.00 0.00 0.00 2.24
337 338 1.000394 GTGGGCGTGGCATTTTAGTTT 60.000 47.619 0.00 0.00 0.00 2.66
338 339 1.271102 TGGGCGTGGCATTTTAGTTTC 59.729 47.619 0.00 0.00 0.00 2.78
339 340 1.544246 GGGCGTGGCATTTTAGTTTCT 59.456 47.619 0.00 0.00 0.00 2.52
340 341 2.029380 GGGCGTGGCATTTTAGTTTCTT 60.029 45.455 0.00 0.00 0.00 2.52
341 342 3.242518 GGCGTGGCATTTTAGTTTCTTC 58.757 45.455 0.00 0.00 0.00 2.87
342 343 3.242518 GCGTGGCATTTTAGTTTCTTCC 58.757 45.455 0.00 0.00 0.00 3.46
343 344 3.057526 GCGTGGCATTTTAGTTTCTTCCT 60.058 43.478 0.00 0.00 0.00 3.36
344 345 4.723248 CGTGGCATTTTAGTTTCTTCCTC 58.277 43.478 0.00 0.00 0.00 3.71
345 346 4.215399 CGTGGCATTTTAGTTTCTTCCTCA 59.785 41.667 0.00 0.00 0.00 3.86
346 347 5.617751 CGTGGCATTTTAGTTTCTTCCTCAG 60.618 44.000 0.00 0.00 0.00 3.35
347 348 4.766891 TGGCATTTTAGTTTCTTCCTCAGG 59.233 41.667 0.00 0.00 0.00 3.86
348 349 4.767409 GGCATTTTAGTTTCTTCCTCAGGT 59.233 41.667 0.00 0.00 0.00 4.00
349 350 5.335976 GGCATTTTAGTTTCTTCCTCAGGTG 60.336 44.000 0.00 0.00 0.00 4.00
350 351 5.473504 GCATTTTAGTTTCTTCCTCAGGTGA 59.526 40.000 0.00 0.00 0.00 4.02
351 352 6.151817 GCATTTTAGTTTCTTCCTCAGGTGAT 59.848 38.462 0.00 0.00 0.00 3.06
352 353 7.533426 CATTTTAGTTTCTTCCTCAGGTGATG 58.467 38.462 0.00 0.00 0.00 3.07
353 354 5.825593 TTAGTTTCTTCCTCAGGTGATGT 57.174 39.130 0.00 0.00 0.00 3.06
354 355 4.713792 AGTTTCTTCCTCAGGTGATGTT 57.286 40.909 0.00 0.00 0.00 2.71
355 356 4.646572 AGTTTCTTCCTCAGGTGATGTTC 58.353 43.478 0.00 0.00 0.00 3.18
356 357 3.703001 TTCTTCCTCAGGTGATGTTCC 57.297 47.619 0.00 0.00 0.00 3.62
357 358 2.619931 TCTTCCTCAGGTGATGTTCCA 58.380 47.619 0.00 0.00 0.00 3.53
358 359 2.978978 TCTTCCTCAGGTGATGTTCCAA 59.021 45.455 0.00 0.00 0.00 3.53
359 360 3.588842 TCTTCCTCAGGTGATGTTCCAAT 59.411 43.478 0.00 0.00 0.00 3.16
360 361 4.782691 TCTTCCTCAGGTGATGTTCCAATA 59.217 41.667 0.00 0.00 0.00 1.90
361 362 5.429762 TCTTCCTCAGGTGATGTTCCAATAT 59.570 40.000 0.00 0.00 0.00 1.28
362 363 6.615316 TCTTCCTCAGGTGATGTTCCAATATA 59.385 38.462 0.00 0.00 0.00 0.86
363 364 6.823286 TCCTCAGGTGATGTTCCAATATAA 57.177 37.500 0.00 0.00 0.00 0.98
364 365 7.392766 TCCTCAGGTGATGTTCCAATATAAT 57.607 36.000 0.00 0.00 0.00 1.28
365 366 8.504811 TCCTCAGGTGATGTTCCAATATAATA 57.495 34.615 0.00 0.00 0.00 0.98
366 367 9.116080 TCCTCAGGTGATGTTCCAATATAATAT 57.884 33.333 0.00 0.00 0.00 1.28
367 368 9.170734 CCTCAGGTGATGTTCCAATATAATATG 57.829 37.037 0.00 0.00 0.00 1.78
368 369 9.730705 CTCAGGTGATGTTCCAATATAATATGT 57.269 33.333 0.00 0.00 0.00 2.29
371 372 9.520515 AGGTGATGTTCCAATATAATATGTTCC 57.479 33.333 0.00 0.00 0.00 3.62
372 373 9.295825 GGTGATGTTCCAATATAATATGTTCCA 57.704 33.333 0.00 0.00 0.00 3.53
396 397 4.740268 CAAGAATTGCATGTACATGTGCT 58.260 39.130 31.10 16.58 40.39 4.40
397 398 4.365899 AGAATTGCATGTACATGTGCTG 57.634 40.909 31.10 12.68 41.78 4.41
398 399 2.572191 ATTGCATGTACATGTGCTGC 57.428 45.000 31.10 21.34 41.78 5.25
399 400 1.536940 TTGCATGTACATGTGCTGCT 58.463 45.000 31.10 8.46 41.78 4.24
400 401 2.399916 TGCATGTACATGTGCTGCTA 57.600 45.000 31.10 16.16 41.78 3.49
401 402 2.921821 TGCATGTACATGTGCTGCTAT 58.078 42.857 31.10 8.62 41.78 2.97
402 403 4.070630 TGCATGTACATGTGCTGCTATA 57.929 40.909 31.10 12.71 41.78 1.31
403 404 3.809279 TGCATGTACATGTGCTGCTATAC 59.191 43.478 31.10 14.58 41.78 1.47
404 405 4.060900 GCATGTACATGTGCTGCTATACT 58.939 43.478 31.10 0.00 40.80 2.12
405 406 4.084171 GCATGTACATGTGCTGCTATACTG 60.084 45.833 31.10 8.14 40.80 2.74
406 407 5.291971 CATGTACATGTGCTGCTATACTGA 58.708 41.667 24.91 0.00 34.23 3.41
407 408 5.535753 TGTACATGTGCTGCTATACTGAT 57.464 39.130 15.25 0.00 0.00 2.90
408 409 5.532557 TGTACATGTGCTGCTATACTGATC 58.467 41.667 15.25 0.00 0.00 2.92
409 410 4.000331 ACATGTGCTGCTATACTGATCC 58.000 45.455 0.00 0.00 0.00 3.36
410 411 3.389002 ACATGTGCTGCTATACTGATCCA 59.611 43.478 0.00 0.00 0.00 3.41
411 412 4.141642 ACATGTGCTGCTATACTGATCCAA 60.142 41.667 0.00 0.00 0.00 3.53
412 413 4.486125 TGTGCTGCTATACTGATCCAAA 57.514 40.909 0.00 0.00 0.00 3.28
413 414 4.842574 TGTGCTGCTATACTGATCCAAAA 58.157 39.130 0.00 0.00 0.00 2.44
414 415 5.252547 TGTGCTGCTATACTGATCCAAAAA 58.747 37.500 0.00 0.00 0.00 1.94
415 416 5.355071 TGTGCTGCTATACTGATCCAAAAAG 59.645 40.000 0.00 0.00 0.00 2.27
416 417 4.883585 TGCTGCTATACTGATCCAAAAAGG 59.116 41.667 0.00 0.00 39.47 3.11
430 431 5.676552 TCCAAAAAGGAAAGTAAAAAGGGC 58.323 37.500 0.00 0.00 45.65 5.19
431 432 4.509970 CCAAAAAGGAAAGTAAAAAGGGCG 59.490 41.667 0.00 0.00 41.22 6.13
432 433 5.113383 CAAAAAGGAAAGTAAAAAGGGCGT 58.887 37.500 0.00 0.00 0.00 5.68
433 434 5.347620 AAAAGGAAAGTAAAAAGGGCGTT 57.652 34.783 0.00 0.00 0.00 4.84
434 435 4.579454 AAGGAAAGTAAAAAGGGCGTTC 57.421 40.909 0.00 0.00 0.00 3.95
435 436 3.558033 AGGAAAGTAAAAAGGGCGTTCA 58.442 40.909 0.00 0.00 0.00 3.18
436 437 4.149598 AGGAAAGTAAAAAGGGCGTTCAT 58.850 39.130 0.00 0.00 0.00 2.57
437 438 4.217767 AGGAAAGTAAAAAGGGCGTTCATC 59.782 41.667 0.00 0.00 0.00 2.92
438 439 4.022676 GGAAAGTAAAAAGGGCGTTCATCA 60.023 41.667 0.00 0.00 0.00 3.07
439 440 5.508320 GGAAAGTAAAAAGGGCGTTCATCAA 60.508 40.000 0.00 0.00 0.00 2.57
440 441 4.499037 AGTAAAAAGGGCGTTCATCAAC 57.501 40.909 0.00 0.00 0.00 3.18
441 442 2.812358 AAAAAGGGCGTTCATCAACC 57.188 45.000 0.00 0.00 0.00 3.77
442 443 1.995376 AAAAGGGCGTTCATCAACCT 58.005 45.000 0.00 0.00 0.00 3.50
443 444 1.247567 AAAGGGCGTTCATCAACCTG 58.752 50.000 0.00 0.00 0.00 4.00
444 445 0.609131 AAGGGCGTTCATCAACCTGG 60.609 55.000 0.00 0.00 0.00 4.45
445 446 2.700773 GGGCGTTCATCAACCTGGC 61.701 63.158 0.00 0.00 0.00 4.85
446 447 1.971167 GGCGTTCATCAACCTGGCA 60.971 57.895 0.00 0.00 0.00 4.92
447 448 1.210155 GCGTTCATCAACCTGGCAC 59.790 57.895 0.00 0.00 0.00 5.01
448 449 1.875963 CGTTCATCAACCTGGCACC 59.124 57.895 0.00 0.00 0.00 5.01
449 450 1.875963 GTTCATCAACCTGGCACCG 59.124 57.895 0.00 0.00 0.00 4.94
450 451 1.971167 TTCATCAACCTGGCACCGC 60.971 57.895 0.00 0.00 0.00 5.68
465 466 4.113815 CGCCCAGATGCCCCTCAA 62.114 66.667 0.00 0.00 0.00 3.02
466 467 2.123982 GCCCAGATGCCCCTCAAG 60.124 66.667 0.00 0.00 0.00 3.02
467 468 2.123982 CCCAGATGCCCCTCAAGC 60.124 66.667 0.00 0.00 0.00 4.01
468 469 2.515523 CCAGATGCCCCTCAAGCG 60.516 66.667 0.00 0.00 0.00 4.68
469 470 2.515523 CAGATGCCCCTCAAGCGG 60.516 66.667 0.00 0.00 0.00 5.52
470 471 4.496336 AGATGCCCCTCAAGCGGC 62.496 66.667 0.00 0.00 45.92 6.53
496 497 4.151582 GGCGCGCCCCAACTACTA 62.152 66.667 39.89 0.00 0.00 1.82
497 498 2.585247 GCGCGCCCCAACTACTAG 60.585 66.667 23.24 0.00 0.00 2.57
513 514 7.040201 CCAACTACTAGTGACAAAGTACAGGTA 60.040 40.741 5.39 0.00 0.00 3.08
703 705 1.992170 GTGAAGCCACCGTACTGTAG 58.008 55.000 0.00 0.00 37.33 2.74
712 714 1.747355 ACCGTACTGTAGAATCCCACG 59.253 52.381 0.00 0.00 0.00 4.94
924 2333 4.508128 TCGATCGCCAAGGTCCGC 62.508 66.667 11.09 0.00 0.00 5.54
1014 2426 2.301296 GGAGACGATGATGATGATGGGT 59.699 50.000 0.00 0.00 0.00 4.51
1089 2501 3.946201 ACGCAGTGGCAGGAGCTT 61.946 61.111 0.00 0.00 42.51 3.74
1260 2678 2.400399 CGCGTCTTCTTCACCAACTTA 58.600 47.619 0.00 0.00 0.00 2.24
1809 3455 1.445716 CCGCCGTCCTACTACTCCAG 61.446 65.000 0.00 0.00 0.00 3.86
1918 3564 2.203938 ACCACCGACAGGGACCAT 60.204 61.111 0.00 0.00 43.47 3.55
1919 3565 2.291043 ACCACCGACAGGGACCATC 61.291 63.158 0.00 0.00 43.47 3.51
1920 3566 2.290287 CCACCGACAGGGACCATCA 61.290 63.158 0.00 0.00 43.47 3.07
1921 3567 1.079127 CACCGACAGGGACCATCAC 60.079 63.158 0.00 0.00 43.47 3.06
1922 3568 2.291043 ACCGACAGGGACCATCACC 61.291 63.158 0.00 0.00 43.47 4.02
1923 3569 2.290287 CCGACAGGGACCATCACCA 61.290 63.158 0.00 0.00 38.47 4.17
2014 3660 1.822613 CATGGAGCCGAAGCAGCAT 60.823 57.895 0.00 0.00 43.56 3.79
2020 3666 1.748879 GCCGAAGCAGCATAACCCA 60.749 57.895 0.00 0.00 39.53 4.51
2040 3695 4.821589 GTCGCTCTTCCCCGGCTG 62.822 72.222 0.00 0.00 0.00 4.85
2355 4014 3.481661 CCACCATGGTACGTTCGC 58.518 61.111 19.28 0.00 31.35 4.70
2459 4121 0.317479 AAGTCCCAACGAGAAGACCG 59.683 55.000 0.00 0.00 0.00 4.79
2496 4161 2.516227 AGAGACCATCTCCACGAAGA 57.484 50.000 2.18 0.00 44.42 2.87
2497 4162 2.808919 AGAGACCATCTCCACGAAGAA 58.191 47.619 2.18 0.00 44.42 2.52
2578 4244 1.388065 CCGAGACCTGGACCAGCTAG 61.388 65.000 16.72 8.86 0.00 3.42
2579 4245 1.819905 GAGACCTGGACCAGCTAGC 59.180 63.158 16.72 6.62 0.00 3.42
2580 4246 0.686112 GAGACCTGGACCAGCTAGCT 60.686 60.000 16.72 12.68 0.00 3.32
2581 4247 0.631753 AGACCTGGACCAGCTAGCTA 59.368 55.000 18.86 0.00 0.00 3.32
2582 4248 1.219213 AGACCTGGACCAGCTAGCTAT 59.781 52.381 18.86 8.84 0.00 2.97
2583 4249 1.616374 GACCTGGACCAGCTAGCTATC 59.384 57.143 18.86 17.40 0.00 2.08
2584 4250 1.219213 ACCTGGACCAGCTAGCTATCT 59.781 52.381 18.86 1.89 0.00 1.98
2585 4251 2.324541 CCTGGACCAGCTAGCTATCTT 58.675 52.381 18.86 1.20 0.00 2.40
2586 4252 2.036992 CCTGGACCAGCTAGCTATCTTG 59.963 54.545 18.86 13.46 0.00 3.02
2587 4253 2.961741 CTGGACCAGCTAGCTATCTTGA 59.038 50.000 18.86 6.04 0.00 3.02
2588 4254 2.695666 TGGACCAGCTAGCTATCTTGAC 59.304 50.000 18.86 6.13 0.00 3.18
2589 4255 2.962421 GGACCAGCTAGCTATCTTGACT 59.038 50.000 18.86 0.00 0.00 3.41
2616 4282 0.800631 CATGCATGCACAGTTCGAGT 59.199 50.000 25.37 0.00 0.00 4.18
2693 4363 6.818644 TCTTCCTTCTCCTTCATTTGTAATCG 59.181 38.462 0.00 0.00 0.00 3.34
2722 4393 2.063266 GTCGAGTGTAACATTTCCGCA 58.937 47.619 0.00 0.00 41.43 5.69
2733 4404 1.750206 CATTTCCGCAACATCCATGGA 59.250 47.619 18.88 18.88 0.00 3.41
2822 4508 3.517500 TGCAGTACCACCTGTGATATCAA 59.482 43.478 7.07 0.00 34.84 2.57
2823 4509 4.164030 TGCAGTACCACCTGTGATATCAAT 59.836 41.667 7.07 0.00 34.84 2.57
2825 4511 6.043127 TGCAGTACCACCTGTGATATCAATAT 59.957 38.462 7.07 0.00 34.84 1.28
2826 4512 6.591834 GCAGTACCACCTGTGATATCAATATC 59.408 42.308 7.07 3.50 35.59 1.63
2875 4566 3.663493 CGAGCGTGTTGGCTTTAGTTAAC 60.663 47.826 0.00 0.00 44.93 2.01
2876 4567 3.207778 AGCGTGTTGGCTTTAGTTAACA 58.792 40.909 8.61 0.00 41.39 2.41
2983 4674 2.439338 GCCCACACCACACACACA 60.439 61.111 0.00 0.00 0.00 3.72
2984 4675 2.770589 GCCCACACCACACACACAC 61.771 63.158 0.00 0.00 0.00 3.82
3067 4759 2.928116 GGACAATACAGTACGCCAACTC 59.072 50.000 0.00 0.00 0.00 3.01
3083 4782 1.448540 CTCGGTCACACCATGCCTC 60.449 63.158 0.00 0.00 38.47 4.70
3102 4801 4.932200 GCCTCTGATAAGCGCTAAACATAT 59.068 41.667 12.05 3.86 0.00 1.78
3113 4812 8.669394 AAGCGCTAAACATATTGTTACTTTTC 57.331 30.769 12.05 0.00 40.14 2.29
3238 4942 2.497675 TGGCTAGAGCTAGGTTTCAGTG 59.502 50.000 6.66 0.00 41.70 3.66
3239 4943 2.545731 GCTAGAGCTAGGTTTCAGTGC 58.454 52.381 6.66 0.00 38.21 4.40
3246 4952 0.679505 TAGGTTTCAGTGCGTGCTCT 59.320 50.000 0.00 0.00 0.00 4.09
3399 5670 1.322538 GGGCGAATTGAATGGCTGGT 61.323 55.000 0.00 0.00 0.00 4.00
3400 5671 0.179129 GGCGAATTGAATGGCTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
3401 5672 0.179129 GCGAATTGAATGGCTGGTGG 60.179 55.000 0.00 0.00 0.00 4.61
3402 5673 1.176527 CGAATTGAATGGCTGGTGGT 58.823 50.000 0.00 0.00 0.00 4.16
3403 5674 1.135315 CGAATTGAATGGCTGGTGGTG 60.135 52.381 0.00 0.00 0.00 4.17
3404 5675 1.205417 GAATTGAATGGCTGGTGGTGG 59.795 52.381 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.594529 TCGCGAATTCTGCAGAAAAC 57.405 45.000 31.55 24.50 37.61 2.43
32 33 6.603599 CAGAATGTCCGATCCACTATATAGGA 59.396 42.308 14.25 4.06 38.50 2.94
51 52 6.875726 TGATGTAGAGAAGTGGAAACAGAATG 59.124 38.462 0.00 0.00 44.46 2.67
52 53 7.009179 TGATGTAGAGAAGTGGAAACAGAAT 57.991 36.000 0.00 0.00 44.46 2.40
53 54 6.419484 TGATGTAGAGAAGTGGAAACAGAA 57.581 37.500 0.00 0.00 44.46 3.02
54 55 6.401394 CATGATGTAGAGAAGTGGAAACAGA 58.599 40.000 0.00 0.00 44.46 3.41
55 56 5.064452 GCATGATGTAGAGAAGTGGAAACAG 59.936 44.000 0.00 0.00 44.46 3.16
56 57 4.937620 GCATGATGTAGAGAAGTGGAAACA 59.062 41.667 0.00 0.00 38.70 2.83
57 58 5.064452 CAGCATGATGTAGAGAAGTGGAAAC 59.936 44.000 1.88 0.00 39.69 2.78
58 59 5.181009 CAGCATGATGTAGAGAAGTGGAAA 58.819 41.667 1.88 0.00 39.69 3.13
59 60 4.763073 CAGCATGATGTAGAGAAGTGGAA 58.237 43.478 1.88 0.00 39.69 3.53
60 61 3.431346 GCAGCATGATGTAGAGAAGTGGA 60.431 47.826 13.32 0.00 39.69 4.02
61 62 2.871022 GCAGCATGATGTAGAGAAGTGG 59.129 50.000 13.32 0.00 39.69 4.00
62 63 2.871022 GGCAGCATGATGTAGAGAAGTG 59.129 50.000 13.32 0.00 39.69 3.16
63 64 2.158842 GGGCAGCATGATGTAGAGAAGT 60.159 50.000 13.32 0.00 39.69 3.01
64 65 2.158856 TGGGCAGCATGATGTAGAGAAG 60.159 50.000 13.32 0.00 39.69 2.85
65 66 1.839354 TGGGCAGCATGATGTAGAGAA 59.161 47.619 13.32 0.00 39.69 2.87
66 67 1.139654 GTGGGCAGCATGATGTAGAGA 59.860 52.381 13.32 0.00 39.69 3.10
67 68 1.590932 GTGGGCAGCATGATGTAGAG 58.409 55.000 13.32 0.00 39.69 2.43
68 69 0.181114 GGTGGGCAGCATGATGTAGA 59.819 55.000 13.32 0.00 39.69 2.59
69 70 0.107066 TGGTGGGCAGCATGATGTAG 60.107 55.000 13.32 0.00 39.69 2.74
70 71 0.330941 TTGGTGGGCAGCATGATGTA 59.669 50.000 13.32 0.00 39.69 2.29
71 72 0.968901 CTTGGTGGGCAGCATGATGT 60.969 55.000 13.32 0.00 39.69 3.06
72 73 1.813859 CTTGGTGGGCAGCATGATG 59.186 57.895 6.59 6.59 39.69 3.07
73 74 2.056223 GCTTGGTGGGCAGCATGAT 61.056 57.895 0.00 0.00 39.69 2.45
74 75 2.677524 GCTTGGTGGGCAGCATGA 60.678 61.111 0.00 0.00 39.69 3.07
75 76 2.992689 TGCTTGGTGGGCAGCATG 60.993 61.111 0.00 0.00 41.20 4.06
78 79 3.766691 CCATGCTTGGTGGGCAGC 61.767 66.667 10.48 0.00 43.15 5.25
79 80 0.106569 TATCCATGCTTGGTGGGCAG 60.107 55.000 17.54 0.00 44.06 4.85
80 81 0.557238 ATATCCATGCTTGGTGGGCA 59.443 50.000 17.54 0.00 44.06 5.36
81 82 1.615392 GAATATCCATGCTTGGTGGGC 59.385 52.381 17.54 2.78 44.06 5.36
82 83 2.624838 GTGAATATCCATGCTTGGTGGG 59.375 50.000 17.54 0.00 44.06 4.61
83 84 3.289836 TGTGAATATCCATGCTTGGTGG 58.710 45.455 17.54 5.23 44.06 4.61
84 85 4.340097 ACATGTGAATATCCATGCTTGGTG 59.660 41.667 17.54 8.23 44.06 4.17
85 86 4.539726 ACATGTGAATATCCATGCTTGGT 58.460 39.130 17.54 8.39 44.06 3.67
86 87 5.048504 GGTACATGTGAATATCCATGCTTGG 60.049 44.000 12.41 12.41 41.69 3.61
87 88 5.334337 CGGTACATGTGAATATCCATGCTTG 60.334 44.000 9.11 0.00 41.69 4.01
88 89 4.756642 CGGTACATGTGAATATCCATGCTT 59.243 41.667 9.11 0.00 41.69 3.91
89 90 4.040339 TCGGTACATGTGAATATCCATGCT 59.960 41.667 9.11 2.40 41.69 3.79
90 91 4.314961 TCGGTACATGTGAATATCCATGC 58.685 43.478 9.11 0.00 41.69 4.06
91 92 7.173047 TCAAATCGGTACATGTGAATATCCATG 59.827 37.037 9.11 7.90 43.21 3.66
92 93 7.223584 TCAAATCGGTACATGTGAATATCCAT 58.776 34.615 9.11 0.00 0.00 3.41
93 94 6.587273 TCAAATCGGTACATGTGAATATCCA 58.413 36.000 9.11 0.00 0.00 3.41
94 95 7.672983 ATCAAATCGGTACATGTGAATATCC 57.327 36.000 9.11 0.79 0.00 2.59
95 96 8.773645 TCAATCAAATCGGTACATGTGAATATC 58.226 33.333 9.11 0.00 0.00 1.63
96 97 8.675705 TCAATCAAATCGGTACATGTGAATAT 57.324 30.769 9.11 0.00 0.00 1.28
97 98 8.675705 ATCAATCAAATCGGTACATGTGAATA 57.324 30.769 9.11 0.00 0.00 1.75
98 99 7.255242 GGATCAATCAAATCGGTACATGTGAAT 60.255 37.037 9.11 0.00 0.00 2.57
99 100 6.038161 GGATCAATCAAATCGGTACATGTGAA 59.962 38.462 9.11 0.00 0.00 3.18
100 101 5.527214 GGATCAATCAAATCGGTACATGTGA 59.473 40.000 9.11 0.00 0.00 3.58
101 102 5.528690 AGGATCAATCAAATCGGTACATGTG 59.471 40.000 9.11 0.00 0.00 3.21
102 103 5.684704 AGGATCAATCAAATCGGTACATGT 58.315 37.500 2.69 2.69 0.00 3.21
103 104 7.388776 ACATAGGATCAATCAAATCGGTACATG 59.611 37.037 0.00 0.00 0.00 3.21
104 105 7.388776 CACATAGGATCAATCAAATCGGTACAT 59.611 37.037 0.00 0.00 0.00 2.29
105 106 6.705825 CACATAGGATCAATCAAATCGGTACA 59.294 38.462 0.00 0.00 0.00 2.90
106 107 6.347725 GCACATAGGATCAATCAAATCGGTAC 60.348 42.308 0.00 0.00 0.00 3.34
107 108 5.700832 GCACATAGGATCAATCAAATCGGTA 59.299 40.000 0.00 0.00 0.00 4.02
108 109 4.516698 GCACATAGGATCAATCAAATCGGT 59.483 41.667 0.00 0.00 0.00 4.69
109 110 4.758674 AGCACATAGGATCAATCAAATCGG 59.241 41.667 0.00 0.00 0.00 4.18
110 111 5.936686 AGCACATAGGATCAATCAAATCG 57.063 39.130 0.00 0.00 0.00 3.34
111 112 7.976135 AGTAGCACATAGGATCAATCAAATC 57.024 36.000 0.00 0.00 0.00 2.17
112 113 7.994911 TGAAGTAGCACATAGGATCAATCAAAT 59.005 33.333 0.00 0.00 0.00 2.32
113 114 7.280876 GTGAAGTAGCACATAGGATCAATCAAA 59.719 37.037 0.00 0.00 38.63 2.69
114 115 6.763135 GTGAAGTAGCACATAGGATCAATCAA 59.237 38.462 0.00 0.00 38.63 2.57
115 116 6.127083 TGTGAAGTAGCACATAGGATCAATCA 60.127 38.462 0.00 0.00 43.35 2.57
116 117 6.283694 TGTGAAGTAGCACATAGGATCAATC 58.716 40.000 0.00 0.00 43.35 2.67
117 118 6.239217 TGTGAAGTAGCACATAGGATCAAT 57.761 37.500 0.00 0.00 43.35 2.57
118 119 5.675684 TGTGAAGTAGCACATAGGATCAA 57.324 39.130 0.00 0.00 43.35 2.57
128 129 6.758886 ACTTAGCTGATAATGTGAAGTAGCAC 59.241 38.462 0.00 0.00 39.22 4.40
129 130 6.878317 ACTTAGCTGATAATGTGAAGTAGCA 58.122 36.000 0.00 0.00 32.42 3.49
130 131 7.778470 AACTTAGCTGATAATGTGAAGTAGC 57.222 36.000 0.00 0.00 0.00 3.58
140 141 9.765795 GGACAGTGTATAAACTTAGCTGATAAT 57.234 33.333 0.00 0.00 0.00 1.28
141 142 8.202137 GGGACAGTGTATAAACTTAGCTGATAA 58.798 37.037 0.00 0.00 0.00 1.75
142 143 7.563924 AGGGACAGTGTATAAACTTAGCTGATA 59.436 37.037 0.00 0.00 0.00 2.15
143 144 6.384305 AGGGACAGTGTATAAACTTAGCTGAT 59.616 38.462 0.00 0.00 0.00 2.90
144 145 5.720041 AGGGACAGTGTATAAACTTAGCTGA 59.280 40.000 0.00 0.00 0.00 4.26
145 146 5.978814 AGGGACAGTGTATAAACTTAGCTG 58.021 41.667 0.00 0.00 0.00 4.24
146 147 7.729124 TTAGGGACAGTGTATAAACTTAGCT 57.271 36.000 0.00 0.00 0.00 3.32
147 148 7.494952 CCTTTAGGGACAGTGTATAAACTTAGC 59.505 40.741 0.00 0.00 37.23 3.09
148 149 7.494952 GCCTTTAGGGACAGTGTATAAACTTAG 59.505 40.741 0.00 0.00 37.23 2.18
149 150 7.333323 GCCTTTAGGGACAGTGTATAAACTTA 58.667 38.462 0.00 0.00 37.23 2.24
150 151 6.178324 GCCTTTAGGGACAGTGTATAAACTT 58.822 40.000 0.00 0.00 37.23 2.66
151 152 5.338953 GGCCTTTAGGGACAGTGTATAAACT 60.339 44.000 0.00 0.00 44.40 2.66
152 153 4.880120 GGCCTTTAGGGACAGTGTATAAAC 59.120 45.833 0.00 0.00 44.40 2.01
153 154 5.106876 GGCCTTTAGGGACAGTGTATAAA 57.893 43.478 0.00 1.98 44.40 1.40
154 155 4.765813 GGCCTTTAGGGACAGTGTATAA 57.234 45.455 0.00 0.00 44.40 0.98
173 174 1.680338 ACATCGATTTGGGCTTAGGC 58.320 50.000 0.00 0.00 37.82 3.93
174 175 6.391227 AATTAACATCGATTTGGGCTTAGG 57.609 37.500 0.00 0.00 0.00 2.69
175 176 6.438763 GGAATTAACATCGATTTGGGCTTAG 58.561 40.000 0.00 0.00 0.00 2.18
176 177 5.300792 GGGAATTAACATCGATTTGGGCTTA 59.699 40.000 0.00 0.00 0.00 3.09
177 178 4.099419 GGGAATTAACATCGATTTGGGCTT 59.901 41.667 0.00 0.00 0.00 4.35
178 179 3.636764 GGGAATTAACATCGATTTGGGCT 59.363 43.478 0.00 0.00 0.00 5.19
179 180 3.636764 AGGGAATTAACATCGATTTGGGC 59.363 43.478 0.00 0.00 0.00 5.36
180 181 4.037923 CCAGGGAATTAACATCGATTTGGG 59.962 45.833 0.00 0.00 0.00 4.12
181 182 4.037923 CCCAGGGAATTAACATCGATTTGG 59.962 45.833 0.00 0.00 0.00 3.28
182 183 4.499696 GCCCAGGGAATTAACATCGATTTG 60.500 45.833 10.89 0.00 0.00 2.32
183 184 3.636764 GCCCAGGGAATTAACATCGATTT 59.363 43.478 10.89 0.00 0.00 2.17
184 185 3.222603 GCCCAGGGAATTAACATCGATT 58.777 45.455 10.89 0.00 0.00 3.34
185 186 2.174639 TGCCCAGGGAATTAACATCGAT 59.825 45.455 10.89 0.00 0.00 3.59
186 187 1.562008 TGCCCAGGGAATTAACATCGA 59.438 47.619 10.89 0.00 0.00 3.59
187 188 2.051334 TGCCCAGGGAATTAACATCG 57.949 50.000 10.89 0.00 0.00 3.84
188 189 5.357742 AAATTGCCCAGGGAATTAACATC 57.642 39.130 10.89 0.00 43.55 3.06
189 190 5.777526 AAAATTGCCCAGGGAATTAACAT 57.222 34.783 10.89 0.00 43.55 2.71
190 191 5.574970 AAAAATTGCCCAGGGAATTAACA 57.425 34.783 10.89 0.00 43.55 2.41
209 210 5.064558 TGCCACGGTGTATTAGAAGAAAAA 58.935 37.500 7.45 0.00 0.00 1.94
210 211 4.643463 TGCCACGGTGTATTAGAAGAAAA 58.357 39.130 7.45 0.00 0.00 2.29
211 212 4.274602 TGCCACGGTGTATTAGAAGAAA 57.725 40.909 7.45 0.00 0.00 2.52
212 213 3.965379 TGCCACGGTGTATTAGAAGAA 57.035 42.857 7.45 0.00 0.00 2.52
213 214 3.965379 TTGCCACGGTGTATTAGAAGA 57.035 42.857 7.45 0.00 0.00 2.87
214 215 5.365403 TTTTTGCCACGGTGTATTAGAAG 57.635 39.130 7.45 0.00 0.00 2.85
215 216 5.968528 ATTTTTGCCACGGTGTATTAGAA 57.031 34.783 7.45 0.00 0.00 2.10
216 217 5.968528 AATTTTTGCCACGGTGTATTAGA 57.031 34.783 7.45 0.00 0.00 2.10
217 218 7.971168 TGATAAATTTTTGCCACGGTGTATTAG 59.029 33.333 7.45 0.00 0.00 1.73
218 219 7.755822 GTGATAAATTTTTGCCACGGTGTATTA 59.244 33.333 7.45 0.00 0.00 0.98
219 220 6.588373 GTGATAAATTTTTGCCACGGTGTATT 59.412 34.615 7.45 0.00 0.00 1.89
220 221 6.096695 GTGATAAATTTTTGCCACGGTGTAT 58.903 36.000 7.45 0.00 0.00 2.29
221 222 5.462405 GTGATAAATTTTTGCCACGGTGTA 58.538 37.500 7.45 0.00 0.00 2.90
222 223 4.303282 GTGATAAATTTTTGCCACGGTGT 58.697 39.130 7.45 0.00 0.00 4.16
223 224 3.677596 GGTGATAAATTTTTGCCACGGTG 59.322 43.478 0.00 0.00 0.00 4.94
224 225 3.306433 GGGTGATAAATTTTTGCCACGGT 60.306 43.478 0.00 0.00 0.00 4.83
225 226 3.258228 GGGTGATAAATTTTTGCCACGG 58.742 45.455 0.00 0.00 0.00 4.94
226 227 3.919216 TGGGTGATAAATTTTTGCCACG 58.081 40.909 0.00 0.00 0.00 4.94
227 228 4.252878 CCTGGGTGATAAATTTTTGCCAC 58.747 43.478 0.00 0.18 0.00 5.01
228 229 3.262915 CCCTGGGTGATAAATTTTTGCCA 59.737 43.478 3.97 0.00 0.00 4.92
229 230 3.263170 ACCCTGGGTGATAAATTTTTGCC 59.737 43.478 19.82 0.00 32.98 4.52
230 231 4.020662 TGACCCTGGGTGATAAATTTTTGC 60.021 41.667 26.16 4.12 35.25 3.68
231 232 5.736951 TGACCCTGGGTGATAAATTTTTG 57.263 39.130 26.16 0.00 35.25 2.44
232 233 6.328934 AGTTTGACCCTGGGTGATAAATTTTT 59.671 34.615 26.16 6.68 35.25 1.94
233 234 5.843969 AGTTTGACCCTGGGTGATAAATTTT 59.156 36.000 26.16 8.79 35.25 1.82
234 235 5.402630 AGTTTGACCCTGGGTGATAAATTT 58.597 37.500 26.16 10.93 35.25 1.82
235 236 5.010708 AGTTTGACCCTGGGTGATAAATT 57.989 39.130 26.16 14.73 35.25 1.82
236 237 4.044065 TGAGTTTGACCCTGGGTGATAAAT 59.956 41.667 26.16 13.11 35.25 1.40
237 238 3.396276 TGAGTTTGACCCTGGGTGATAAA 59.604 43.478 26.16 17.80 35.25 1.40
238 239 2.983192 TGAGTTTGACCCTGGGTGATAA 59.017 45.455 26.16 12.70 35.25 1.75
239 240 2.304761 GTGAGTTTGACCCTGGGTGATA 59.695 50.000 26.16 7.35 35.25 2.15
240 241 1.073923 GTGAGTTTGACCCTGGGTGAT 59.926 52.381 26.16 0.00 35.25 3.06
241 242 0.472471 GTGAGTTTGACCCTGGGTGA 59.528 55.000 26.16 13.42 35.25 4.02
242 243 0.182537 TGTGAGTTTGACCCTGGGTG 59.817 55.000 26.16 0.00 35.25 4.61
243 244 0.474184 CTGTGAGTTTGACCCTGGGT 59.526 55.000 20.72 20.72 39.44 4.51
244 245 0.474184 ACTGTGAGTTTGACCCTGGG 59.526 55.000 12.28 12.28 0.00 4.45
245 246 2.368875 AGTACTGTGAGTTTGACCCTGG 59.631 50.000 0.00 0.00 0.00 4.45
246 247 3.753294 AGTACTGTGAGTTTGACCCTG 57.247 47.619 0.00 0.00 0.00 4.45
247 248 3.709653 TGAAGTACTGTGAGTTTGACCCT 59.290 43.478 0.00 0.00 0.00 4.34
248 249 3.808174 GTGAAGTACTGTGAGTTTGACCC 59.192 47.826 0.00 0.00 0.00 4.46
249 250 4.694339 AGTGAAGTACTGTGAGTTTGACC 58.306 43.478 0.00 0.00 38.49 4.02
250 251 6.663944 AAAGTGAAGTACTGTGAGTTTGAC 57.336 37.500 0.00 0.00 40.26 3.18
251 252 9.472361 GTATAAAGTGAAGTACTGTGAGTTTGA 57.528 33.333 0.00 0.00 40.26 2.69
252 253 8.709646 GGTATAAAGTGAAGTACTGTGAGTTTG 58.290 37.037 0.00 0.00 40.26 2.93
253 254 8.648693 AGGTATAAAGTGAAGTACTGTGAGTTT 58.351 33.333 0.00 1.97 40.26 2.66
254 255 8.191534 AGGTATAAAGTGAAGTACTGTGAGTT 57.808 34.615 0.00 0.00 40.26 3.01
255 256 7.778185 AGGTATAAAGTGAAGTACTGTGAGT 57.222 36.000 0.00 0.00 40.26 3.41
256 257 8.304596 TGAAGGTATAAAGTGAAGTACTGTGAG 58.695 37.037 0.00 0.00 40.26 3.51
257 258 8.185506 TGAAGGTATAAAGTGAAGTACTGTGA 57.814 34.615 0.00 0.00 40.26 3.58
258 259 8.827177 TTGAAGGTATAAAGTGAAGTACTGTG 57.173 34.615 0.00 0.00 40.26 3.66
259 260 9.436957 CATTGAAGGTATAAAGTGAAGTACTGT 57.563 33.333 0.00 0.00 40.26 3.55
260 261 8.391106 GCATTGAAGGTATAAAGTGAAGTACTG 58.609 37.037 0.00 0.00 40.26 2.74
261 262 8.322091 AGCATTGAAGGTATAAAGTGAAGTACT 58.678 33.333 0.00 0.00 42.89 2.73
262 263 8.494016 AGCATTGAAGGTATAAAGTGAAGTAC 57.506 34.615 0.00 0.00 0.00 2.73
263 264 9.162764 GAAGCATTGAAGGTATAAAGTGAAGTA 57.837 33.333 0.00 0.00 0.00 2.24
264 265 7.885399 AGAAGCATTGAAGGTATAAAGTGAAGT 59.115 33.333 0.00 0.00 0.00 3.01
265 266 8.273780 AGAAGCATTGAAGGTATAAAGTGAAG 57.726 34.615 0.00 0.00 0.00 3.02
266 267 9.733556 TTAGAAGCATTGAAGGTATAAAGTGAA 57.266 29.630 0.00 0.00 0.00 3.18
267 268 9.905713 ATTAGAAGCATTGAAGGTATAAAGTGA 57.094 29.630 0.00 0.00 0.00 3.41
272 273 9.555727 GGTGTATTAGAAGCATTGAAGGTATAA 57.444 33.333 0.00 0.00 0.00 0.98
273 274 8.934697 AGGTGTATTAGAAGCATTGAAGGTATA 58.065 33.333 0.00 0.00 0.00 1.47
274 275 7.806180 AGGTGTATTAGAAGCATTGAAGGTAT 58.194 34.615 0.00 0.00 0.00 2.73
275 276 7.195374 AGGTGTATTAGAAGCATTGAAGGTA 57.805 36.000 0.00 0.00 0.00 3.08
276 277 6.067217 AGGTGTATTAGAAGCATTGAAGGT 57.933 37.500 0.00 0.00 0.00 3.50
277 278 6.483640 GGTAGGTGTATTAGAAGCATTGAAGG 59.516 42.308 0.00 0.00 0.00 3.46
278 279 6.201044 CGGTAGGTGTATTAGAAGCATTGAAG 59.799 42.308 0.00 0.00 0.00 3.02
279 280 6.046593 CGGTAGGTGTATTAGAAGCATTGAA 58.953 40.000 0.00 0.00 0.00 2.69
280 281 5.361571 TCGGTAGGTGTATTAGAAGCATTGA 59.638 40.000 0.00 0.00 0.00 2.57
281 282 5.597806 TCGGTAGGTGTATTAGAAGCATTG 58.402 41.667 0.00 0.00 0.00 2.82
282 283 5.864418 TCGGTAGGTGTATTAGAAGCATT 57.136 39.130 0.00 0.00 0.00 3.56
283 284 5.784177 CATCGGTAGGTGTATTAGAAGCAT 58.216 41.667 0.00 0.00 0.00 3.79
284 285 4.500887 GCATCGGTAGGTGTATTAGAAGCA 60.501 45.833 0.00 0.00 0.00 3.91
285 286 3.988517 GCATCGGTAGGTGTATTAGAAGC 59.011 47.826 0.00 0.00 0.00 3.86
286 287 5.455056 AGCATCGGTAGGTGTATTAGAAG 57.545 43.478 0.00 0.00 0.00 2.85
287 288 8.818622 ATATAGCATCGGTAGGTGTATTAGAA 57.181 34.615 0.00 0.00 0.00 2.10
288 289 7.226128 CGATATAGCATCGGTAGGTGTATTAGA 59.774 40.741 0.00 0.00 37.84 2.10
289 290 7.012138 ACGATATAGCATCGGTAGGTGTATTAG 59.988 40.741 10.97 0.00 44.98 1.73
290 291 6.825213 ACGATATAGCATCGGTAGGTGTATTA 59.175 38.462 10.97 0.00 44.98 0.98
291 292 5.651139 ACGATATAGCATCGGTAGGTGTATT 59.349 40.000 10.97 0.00 44.98 1.89
292 293 5.191426 ACGATATAGCATCGGTAGGTGTAT 58.809 41.667 10.97 0.00 44.98 2.29
293 294 4.582869 ACGATATAGCATCGGTAGGTGTA 58.417 43.478 10.97 0.00 44.98 2.90
294 295 3.418995 ACGATATAGCATCGGTAGGTGT 58.581 45.455 10.97 0.00 44.98 4.16
295 296 4.166523 CAACGATATAGCATCGGTAGGTG 58.833 47.826 10.97 0.00 44.98 4.00
296 297 3.825014 ACAACGATATAGCATCGGTAGGT 59.175 43.478 10.97 0.00 44.98 3.08
297 298 4.166523 CACAACGATATAGCATCGGTAGG 58.833 47.826 10.97 0.00 44.98 3.18
298 299 4.166523 CCACAACGATATAGCATCGGTAG 58.833 47.826 10.97 3.00 44.98 3.18
299 300 3.057104 CCCACAACGATATAGCATCGGTA 60.057 47.826 10.97 0.00 44.98 4.02
300 301 2.288825 CCCACAACGATATAGCATCGGT 60.289 50.000 10.97 1.46 44.98 4.69
301 302 2.337583 CCCACAACGATATAGCATCGG 58.662 52.381 10.97 0.00 44.98 4.18
302 303 1.726791 GCCCACAACGATATAGCATCG 59.273 52.381 5.17 5.17 46.02 3.84
303 304 1.726791 CGCCCACAACGATATAGCATC 59.273 52.381 0.00 0.00 0.00 3.91
304 305 1.070134 ACGCCCACAACGATATAGCAT 59.930 47.619 0.00 0.00 0.00 3.79
305 306 0.462375 ACGCCCACAACGATATAGCA 59.538 50.000 0.00 0.00 0.00 3.49
306 307 0.859232 CACGCCCACAACGATATAGC 59.141 55.000 0.00 0.00 0.00 2.97
307 308 1.497991 CCACGCCCACAACGATATAG 58.502 55.000 0.00 0.00 0.00 1.31
308 309 0.531090 GCCACGCCCACAACGATATA 60.531 55.000 0.00 0.00 0.00 0.86
309 310 1.817941 GCCACGCCCACAACGATAT 60.818 57.895 0.00 0.00 0.00 1.63
310 311 2.435234 GCCACGCCCACAACGATA 60.435 61.111 0.00 0.00 0.00 2.92
311 312 3.918253 ATGCCACGCCCACAACGAT 62.918 57.895 0.00 0.00 0.00 3.73
312 313 4.634703 ATGCCACGCCCACAACGA 62.635 61.111 0.00 0.00 0.00 3.85
313 314 2.691674 AAAATGCCACGCCCACAACG 62.692 55.000 0.00 0.00 0.00 4.10
314 315 0.315568 TAAAATGCCACGCCCACAAC 59.684 50.000 0.00 0.00 0.00 3.32
315 316 0.600557 CTAAAATGCCACGCCCACAA 59.399 50.000 0.00 0.00 0.00 3.33
316 317 0.538516 ACTAAAATGCCACGCCCACA 60.539 50.000 0.00 0.00 0.00 4.17
317 318 0.601057 AACTAAAATGCCACGCCCAC 59.399 50.000 0.00 0.00 0.00 4.61
318 319 1.271102 GAAACTAAAATGCCACGCCCA 59.729 47.619 0.00 0.00 0.00 5.36
319 320 1.544246 AGAAACTAAAATGCCACGCCC 59.456 47.619 0.00 0.00 0.00 6.13
320 321 3.242518 GAAGAAACTAAAATGCCACGCC 58.757 45.455 0.00 0.00 0.00 5.68
321 322 3.057526 AGGAAGAAACTAAAATGCCACGC 60.058 43.478 0.00 0.00 0.00 5.34
322 323 4.215399 TGAGGAAGAAACTAAAATGCCACG 59.785 41.667 0.00 0.00 0.00 4.94
323 324 5.335976 CCTGAGGAAGAAACTAAAATGCCAC 60.336 44.000 0.00 0.00 0.00 5.01
324 325 4.766891 CCTGAGGAAGAAACTAAAATGCCA 59.233 41.667 0.00 0.00 0.00 4.92
325 326 4.767409 ACCTGAGGAAGAAACTAAAATGCC 59.233 41.667 4.99 0.00 0.00 4.40
326 327 5.473504 TCACCTGAGGAAGAAACTAAAATGC 59.526 40.000 4.99 0.00 0.00 3.56
327 328 7.175641 ACATCACCTGAGGAAGAAACTAAAATG 59.824 37.037 4.99 0.00 0.00 2.32
328 329 7.234355 ACATCACCTGAGGAAGAAACTAAAAT 58.766 34.615 4.99 0.00 0.00 1.82
329 330 6.601332 ACATCACCTGAGGAAGAAACTAAAA 58.399 36.000 4.99 0.00 0.00 1.52
330 331 6.187727 ACATCACCTGAGGAAGAAACTAAA 57.812 37.500 4.99 0.00 0.00 1.85
331 332 5.825593 ACATCACCTGAGGAAGAAACTAA 57.174 39.130 4.99 0.00 0.00 2.24
332 333 5.280011 GGAACATCACCTGAGGAAGAAACTA 60.280 44.000 4.99 0.00 0.00 2.24
333 334 4.505742 GGAACATCACCTGAGGAAGAAACT 60.506 45.833 4.99 0.00 0.00 2.66
334 335 3.753797 GGAACATCACCTGAGGAAGAAAC 59.246 47.826 4.99 0.00 0.00 2.78
335 336 3.394274 TGGAACATCACCTGAGGAAGAAA 59.606 43.478 4.99 0.00 0.00 2.52
336 337 2.978978 TGGAACATCACCTGAGGAAGAA 59.021 45.455 4.99 0.00 0.00 2.52
337 338 2.619931 TGGAACATCACCTGAGGAAGA 58.380 47.619 4.99 2.75 0.00 2.87
338 339 3.423539 TTGGAACATCACCTGAGGAAG 57.576 47.619 4.99 0.00 39.30 3.46
339 340 5.715439 ATATTGGAACATCACCTGAGGAA 57.285 39.130 4.99 0.00 39.30 3.36
340 341 6.823286 TTATATTGGAACATCACCTGAGGA 57.177 37.500 4.99 0.00 39.30 3.71
341 342 9.170734 CATATTATATTGGAACATCACCTGAGG 57.829 37.037 0.00 0.00 39.30 3.86
342 343 9.730705 ACATATTATATTGGAACATCACCTGAG 57.269 33.333 0.00 0.00 39.30 3.35
345 346 9.520515 GGAACATATTATATTGGAACATCACCT 57.479 33.333 0.00 0.00 39.30 4.00
346 347 9.295825 TGGAACATATTATATTGGAACATCACC 57.704 33.333 0.00 0.00 39.30 4.02
366 367 7.842133 CATGTACATGCAATTCTTGATGGAACA 60.842 37.037 22.27 0.00 35.45 3.18
367 368 5.953183 TGTACATGCAATTCTTGATGGAAC 58.047 37.500 0.00 0.00 0.00 3.62
368 369 6.153170 ACATGTACATGCAATTCTTGATGGAA 59.847 34.615 31.19 0.00 42.39 3.53
369 370 5.653330 ACATGTACATGCAATTCTTGATGGA 59.347 36.000 31.19 0.00 42.39 3.41
370 371 5.746721 CACATGTACATGCAATTCTTGATGG 59.253 40.000 31.19 7.08 42.39 3.51
371 372 5.231357 GCACATGTACATGCAATTCTTGATG 59.769 40.000 31.19 19.63 42.39 3.07
372 373 5.126545 AGCACATGTACATGCAATTCTTGAT 59.873 36.000 31.19 17.98 44.59 2.57
373 374 4.460034 AGCACATGTACATGCAATTCTTGA 59.540 37.500 31.19 0.00 44.59 3.02
374 375 4.561213 CAGCACATGTACATGCAATTCTTG 59.439 41.667 31.19 21.48 44.59 3.02
375 376 4.740268 CAGCACATGTACATGCAATTCTT 58.260 39.130 31.19 10.94 44.59 2.52
376 377 3.428452 GCAGCACATGTACATGCAATTCT 60.428 43.478 31.19 18.78 44.59 2.40
377 378 2.855963 GCAGCACATGTACATGCAATTC 59.144 45.455 31.19 16.37 44.59 2.17
378 379 2.494471 AGCAGCACATGTACATGCAATT 59.506 40.909 31.19 12.70 44.59 2.32
379 380 2.097036 AGCAGCACATGTACATGCAAT 58.903 42.857 31.19 16.59 44.59 3.56
380 381 1.536940 AGCAGCACATGTACATGCAA 58.463 45.000 31.19 0.00 44.59 4.08
381 382 2.399916 TAGCAGCACATGTACATGCA 57.600 45.000 31.19 10.21 44.59 3.96
382 383 4.060900 AGTATAGCAGCACATGTACATGC 58.939 43.478 31.19 22.12 42.39 4.06
383 384 5.291971 TCAGTATAGCAGCACATGTACATG 58.708 41.667 29.97 29.97 44.15 3.21
384 385 5.535753 TCAGTATAGCAGCACATGTACAT 57.464 39.130 1.41 1.41 0.00 2.29
385 386 5.509670 GGATCAGTATAGCAGCACATGTACA 60.510 44.000 0.00 0.00 0.00 2.90
386 387 4.926238 GGATCAGTATAGCAGCACATGTAC 59.074 45.833 0.00 0.00 0.00 2.90
387 388 4.588528 TGGATCAGTATAGCAGCACATGTA 59.411 41.667 0.00 0.00 0.00 2.29
388 389 3.389002 TGGATCAGTATAGCAGCACATGT 59.611 43.478 0.00 0.00 0.00 3.21
389 390 3.999046 TGGATCAGTATAGCAGCACATG 58.001 45.455 0.00 0.00 0.00 3.21
390 391 4.694760 TTGGATCAGTATAGCAGCACAT 57.305 40.909 0.00 0.00 0.00 3.21
391 392 4.486125 TTTGGATCAGTATAGCAGCACA 57.514 40.909 0.00 0.00 0.00 4.57
392 393 5.220931 CCTTTTTGGATCAGTATAGCAGCAC 60.221 44.000 0.00 0.00 38.35 4.40
393 394 4.883585 CCTTTTTGGATCAGTATAGCAGCA 59.116 41.667 0.00 0.00 38.35 4.41
394 395 5.126067 TCCTTTTTGGATCAGTATAGCAGC 58.874 41.667 0.00 0.00 40.56 5.25
395 396 7.337942 ACTTTCCTTTTTGGATCAGTATAGCAG 59.662 37.037 0.00 0.00 45.68 4.24
396 397 7.175104 ACTTTCCTTTTTGGATCAGTATAGCA 58.825 34.615 0.00 0.00 45.68 3.49
397 398 7.631717 ACTTTCCTTTTTGGATCAGTATAGC 57.368 36.000 0.00 0.00 45.68 2.97
402 403 8.204160 CCTTTTTACTTTCCTTTTTGGATCAGT 58.796 33.333 0.00 0.00 45.68 3.41
403 404 7.657354 CCCTTTTTACTTTCCTTTTTGGATCAG 59.343 37.037 0.00 0.00 45.68 2.90
404 405 7.505258 CCCTTTTTACTTTCCTTTTTGGATCA 58.495 34.615 0.00 0.00 45.68 2.92
405 406 6.426937 GCCCTTTTTACTTTCCTTTTTGGATC 59.573 38.462 0.00 0.00 45.68 3.36
406 407 6.296026 GCCCTTTTTACTTTCCTTTTTGGAT 58.704 36.000 0.00 0.00 45.68 3.41
407 408 5.676552 GCCCTTTTTACTTTCCTTTTTGGA 58.323 37.500 0.00 0.00 44.51 3.53
408 409 4.509970 CGCCCTTTTTACTTTCCTTTTTGG 59.490 41.667 0.00 0.00 37.10 3.28
409 410 5.113383 ACGCCCTTTTTACTTTCCTTTTTG 58.887 37.500 0.00 0.00 0.00 2.44
410 411 5.347620 ACGCCCTTTTTACTTTCCTTTTT 57.652 34.783 0.00 0.00 0.00 1.94
411 412 5.105269 TGAACGCCCTTTTTACTTTCCTTTT 60.105 36.000 0.00 0.00 0.00 2.27
412 413 4.403113 TGAACGCCCTTTTTACTTTCCTTT 59.597 37.500 0.00 0.00 0.00 3.11
413 414 3.955551 TGAACGCCCTTTTTACTTTCCTT 59.044 39.130 0.00 0.00 0.00 3.36
414 415 3.558033 TGAACGCCCTTTTTACTTTCCT 58.442 40.909 0.00 0.00 0.00 3.36
415 416 3.994204 TGAACGCCCTTTTTACTTTCC 57.006 42.857 0.00 0.00 0.00 3.13
416 417 5.116069 TGATGAACGCCCTTTTTACTTTC 57.884 39.130 0.00 0.00 0.00 2.62
417 418 5.286438 GTTGATGAACGCCCTTTTTACTTT 58.714 37.500 0.00 0.00 0.00 2.66
418 419 4.261867 GGTTGATGAACGCCCTTTTTACTT 60.262 41.667 0.00 0.00 32.28 2.24
419 420 3.254903 GGTTGATGAACGCCCTTTTTACT 59.745 43.478 0.00 0.00 32.28 2.24
420 421 3.254903 AGGTTGATGAACGCCCTTTTTAC 59.745 43.478 0.00 0.00 32.28 2.01
421 422 3.254657 CAGGTTGATGAACGCCCTTTTTA 59.745 43.478 0.00 0.00 32.28 1.52
422 423 2.035832 CAGGTTGATGAACGCCCTTTTT 59.964 45.455 0.00 0.00 32.28 1.94
423 424 1.613437 CAGGTTGATGAACGCCCTTTT 59.387 47.619 0.00 0.00 32.28 2.27
424 425 1.247567 CAGGTTGATGAACGCCCTTT 58.752 50.000 0.00 0.00 32.28 3.11
425 426 0.609131 CCAGGTTGATGAACGCCCTT 60.609 55.000 0.00 0.00 32.28 3.95
426 427 1.002134 CCAGGTTGATGAACGCCCT 60.002 57.895 0.00 0.00 32.28 5.19
427 428 2.700773 GCCAGGTTGATGAACGCCC 61.701 63.158 0.00 0.00 32.28 6.13
428 429 1.971167 TGCCAGGTTGATGAACGCC 60.971 57.895 0.00 0.00 32.28 5.68
429 430 1.210155 GTGCCAGGTTGATGAACGC 59.790 57.895 0.00 0.00 32.28 4.84
430 431 1.875963 GGTGCCAGGTTGATGAACG 59.124 57.895 0.00 0.00 32.28 3.95
431 432 1.875963 CGGTGCCAGGTTGATGAAC 59.124 57.895 0.00 0.00 0.00 3.18
432 433 1.971167 GCGGTGCCAGGTTGATGAA 60.971 57.895 0.00 0.00 0.00 2.57
433 434 2.359850 GCGGTGCCAGGTTGATGA 60.360 61.111 0.00 0.00 0.00 2.92
448 449 4.113815 TTGAGGGGCATCTGGGCG 62.114 66.667 0.00 0.00 44.56 6.13
449 450 2.123982 CTTGAGGGGCATCTGGGC 60.124 66.667 0.00 0.00 42.44 5.36
450 451 2.123982 GCTTGAGGGGCATCTGGG 60.124 66.667 0.00 0.00 0.00 4.45
451 452 2.515523 CGCTTGAGGGGCATCTGG 60.516 66.667 0.00 0.00 0.00 3.86
452 453 2.515523 CCGCTTGAGGGGCATCTG 60.516 66.667 0.82 0.00 41.34 2.90
479 480 4.151582 TAGTAGTTGGGGCGCGCC 62.152 66.667 41.63 41.63 0.00 6.53
480 481 2.585247 CTAGTAGTTGGGGCGCGC 60.585 66.667 25.94 25.94 0.00 6.86
481 482 1.518572 CACTAGTAGTTGGGGCGCG 60.519 63.158 0.00 0.00 0.00 6.86
482 483 0.459759 GTCACTAGTAGTTGGGGCGC 60.460 60.000 0.00 0.00 0.00 6.53
483 484 0.892755 TGTCACTAGTAGTTGGGGCG 59.107 55.000 0.00 0.00 0.00 6.13
484 485 3.244457 ACTTTGTCACTAGTAGTTGGGGC 60.244 47.826 0.00 0.00 0.00 5.80
485 486 4.618920 ACTTTGTCACTAGTAGTTGGGG 57.381 45.455 0.00 0.00 0.00 4.96
486 487 6.092955 TGTACTTTGTCACTAGTAGTTGGG 57.907 41.667 0.00 0.00 0.00 4.12
487 488 6.157211 CCTGTACTTTGTCACTAGTAGTTGG 58.843 44.000 0.00 0.00 0.00 3.77
488 489 6.746120 ACCTGTACTTTGTCACTAGTAGTTG 58.254 40.000 0.00 0.00 0.00 3.16
489 490 6.973460 ACCTGTACTTTGTCACTAGTAGTT 57.027 37.500 0.00 0.00 0.00 2.24
490 491 6.150809 GCTACCTGTACTTTGTCACTAGTAGT 59.849 42.308 0.00 0.00 0.00 2.73
491 492 6.150641 TGCTACCTGTACTTTGTCACTAGTAG 59.849 42.308 0.00 0.00 0.00 2.57
492 493 6.005823 TGCTACCTGTACTTTGTCACTAGTA 58.994 40.000 0.00 0.00 0.00 1.82
493 494 4.831155 TGCTACCTGTACTTTGTCACTAGT 59.169 41.667 0.00 0.00 0.00 2.57
494 495 5.386958 TGCTACCTGTACTTTGTCACTAG 57.613 43.478 0.00 0.00 0.00 2.57
495 496 5.995565 ATGCTACCTGTACTTTGTCACTA 57.004 39.130 0.00 0.00 0.00 2.74
496 497 4.891992 ATGCTACCTGTACTTTGTCACT 57.108 40.909 0.00 0.00 0.00 3.41
497 498 5.941948 AAATGCTACCTGTACTTTGTCAC 57.058 39.130 0.00 0.00 0.00 3.67
513 514 8.981647 GTGTGATTTAGTTTCATGAAAAATGCT 58.018 29.630 22.07 16.40 31.33 3.79
695 697 4.357996 GCTAACGTGGGATTCTACAGTAC 58.642 47.826 0.00 0.00 0.00 2.73
700 702 1.406539 TCCGCTAACGTGGGATTCTAC 59.593 52.381 0.00 0.00 41.26 2.59
703 705 0.808847 GGTCCGCTAACGTGGGATTC 60.809 60.000 0.00 0.00 41.26 2.52
712 714 0.323957 AAGTTGGAGGGTCCGCTAAC 59.676 55.000 10.90 10.90 40.17 2.34
828 2237 1.379309 AGGAGCACTCTCGGAGGTC 60.379 63.158 4.96 0.00 40.26 3.85
924 2333 3.767230 CGCTGTCGTTGTGAGGCG 61.767 66.667 0.00 0.00 41.32 5.52
935 2344 0.384974 CGCTAGCTAGCTACGCTGTC 60.385 60.000 36.02 10.94 46.85 3.51
954 2366 2.617274 GCCCGAACACAGCAACCTC 61.617 63.158 0.00 0.00 0.00 3.85
1089 2501 1.196766 AGATGAGTGCCTGGTGCTCA 61.197 55.000 19.19 19.19 42.49 4.26
1101 2513 4.033709 AGGCCATGTACTTGTAGATGAGT 58.966 43.478 16.32 1.84 0.00 3.41
1242 2654 6.787085 AGAAATAAGTTGGTGAAGAAGACG 57.213 37.500 0.00 0.00 0.00 4.18
1260 2678 5.644644 GACATGGAAGCAAATCGAAGAAAT 58.355 37.500 0.00 0.00 43.58 2.17
1720 3366 4.137872 GCGTGGTGGTAGGCGCTA 62.138 66.667 7.64 0.00 45.48 4.26
1809 3455 1.303561 TCCTTGCTGTGGTCCATGC 60.304 57.895 11.51 11.51 0.00 4.06
1918 3564 1.760527 CTGATGGTGGTGGTGGTGA 59.239 57.895 0.00 0.00 0.00 4.02
1919 3565 1.973281 GCTGATGGTGGTGGTGGTG 60.973 63.158 0.00 0.00 0.00 4.17
1920 3566 2.436109 GCTGATGGTGGTGGTGGT 59.564 61.111 0.00 0.00 0.00 4.16
1921 3567 1.973281 GTGCTGATGGTGGTGGTGG 60.973 63.158 0.00 0.00 0.00 4.61
1922 3568 1.973281 GGTGCTGATGGTGGTGGTG 60.973 63.158 0.00 0.00 0.00 4.17
1923 3569 2.005606 TTGGTGCTGATGGTGGTGGT 62.006 55.000 0.00 0.00 0.00 4.16
2005 3651 1.130561 GACGTTGGGTTATGCTGCTTC 59.869 52.381 0.00 0.00 0.00 3.86
2014 3660 0.037975 GGAAGAGCGACGTTGGGTTA 60.038 55.000 4.64 0.00 0.00 2.85
2020 3666 4.065281 CCGGGGAAGAGCGACGTT 62.065 66.667 0.00 0.00 0.00 3.99
2045 3700 4.439472 CGCGTTGTTGCCGTAGCC 62.439 66.667 0.00 0.00 38.69 3.93
2046 3701 4.439472 CCGCGTTGTTGCCGTAGC 62.439 66.667 4.92 0.00 40.48 3.58
2047 3702 4.439472 GCCGCGTTGTTGCCGTAG 62.439 66.667 4.92 0.00 0.00 3.51
2051 3706 4.097863 GTAGGCCGCGTTGTTGCC 62.098 66.667 14.53 14.53 45.70 4.52
2052 3707 4.439472 CGTAGGCCGCGTTGTTGC 62.439 66.667 4.92 0.00 0.00 4.17
2065 3720 1.065928 GGACAGGTCGATGGCGTAG 59.934 63.158 0.00 0.00 38.98 3.51
2354 4013 5.542779 TCAAAGTGTAAGAGAAGAAGAGGC 58.457 41.667 0.00 0.00 0.00 4.70
2355 4014 7.713073 AGTTTCAAAGTGTAAGAGAAGAAGAGG 59.287 37.037 0.00 0.00 0.00 3.69
2459 4121 0.436531 CTCGTTGCAGCTTCGTTCTC 59.563 55.000 0.00 0.00 0.00 2.87
2495 4160 2.713894 GCTCCGTACGTGCGTGTTC 61.714 63.158 24.09 7.12 0.00 3.18
2496 4161 2.732094 GCTCCGTACGTGCGTGTT 60.732 61.111 24.09 0.00 0.00 3.32
2525 4190 4.090588 TAGCACGCCGGGAAAGGG 62.091 66.667 2.18 0.00 0.00 3.95
2578 4244 1.678627 TGCCTCGAGAGTCAAGATAGC 59.321 52.381 15.71 4.97 0.00 2.97
2579 4245 3.856638 GCATGCCTCGAGAGTCAAGATAG 60.857 52.174 15.71 0.00 0.00 2.08
2580 4246 2.035193 GCATGCCTCGAGAGTCAAGATA 59.965 50.000 15.71 0.00 0.00 1.98
2581 4247 1.202510 GCATGCCTCGAGAGTCAAGAT 60.203 52.381 15.71 0.00 0.00 2.40
2582 4248 0.174389 GCATGCCTCGAGAGTCAAGA 59.826 55.000 15.71 0.00 0.00 3.02
2583 4249 0.108472 TGCATGCCTCGAGAGTCAAG 60.108 55.000 15.71 7.04 0.00 3.02
2584 4250 0.538584 ATGCATGCCTCGAGAGTCAA 59.461 50.000 15.71 0.00 0.00 3.18
2585 4251 0.179092 CATGCATGCCTCGAGAGTCA 60.179 55.000 14.93 9.18 0.00 3.41
2586 4252 2.602738 CATGCATGCCTCGAGAGTC 58.397 57.895 14.93 3.10 0.00 3.36
2587 4253 4.850822 CATGCATGCCTCGAGAGT 57.149 55.556 14.93 0.00 0.00 3.24
2616 4282 2.440409 GGCCTTTCAAGATCTTCAGCA 58.560 47.619 4.57 0.00 0.00 4.41
2693 4363 2.610374 TGTTACACTCGACCAAAGCAAC 59.390 45.455 0.00 0.00 0.00 4.17
2733 4404 1.137086 CAACATAGTAGCCTCGCCACT 59.863 52.381 0.00 0.00 0.00 4.00
2796 4482 0.396435 CACAGGTGGTACTGCAAGGA 59.604 55.000 0.00 0.00 42.21 3.36
2822 4508 4.081807 TCGCAAGCTAGCATCTCATGATAT 60.082 41.667 18.83 0.00 29.85 1.63
2823 4509 3.256631 TCGCAAGCTAGCATCTCATGATA 59.743 43.478 18.83 0.00 37.18 2.15
2825 4511 1.410153 TCGCAAGCTAGCATCTCATGA 59.590 47.619 18.83 0.00 37.18 3.07
2826 4512 1.793532 CTCGCAAGCTAGCATCTCATG 59.206 52.381 18.83 6.86 37.18 3.07
2875 4566 9.978044 AATCAGAAAGAGAAAAGAAAAAGGATG 57.022 29.630 0.00 0.00 0.00 3.51
2983 4674 1.373812 TGCTGATGCTGAGCAGTGT 59.626 52.632 14.36 0.00 43.65 3.55
2984 4675 4.296265 TGCTGATGCTGAGCAGTG 57.704 55.556 14.36 6.52 43.65 3.66
3067 4759 1.742880 CAGAGGCATGGTGTGACCG 60.743 63.158 0.00 0.00 42.58 4.79
3083 4782 8.765219 AGTAACAATATGTTTAGCGCTTATCAG 58.235 33.333 18.68 6.11 41.45 2.90
3102 4801 3.135167 AGTCGTGGAGGGAAAAGTAACAA 59.865 43.478 0.00 0.00 0.00 2.83
3113 4812 0.396811 AAAAGGTCAGTCGTGGAGGG 59.603 55.000 0.00 0.00 0.00 4.30
3230 4934 1.192534 GTGTAGAGCACGCACTGAAAC 59.807 52.381 0.00 0.00 38.45 2.78
3231 4935 1.497991 GTGTAGAGCACGCACTGAAA 58.502 50.000 0.00 0.00 38.45 2.69
3232 4936 3.195041 GTGTAGAGCACGCACTGAA 57.805 52.632 0.00 0.00 38.45 3.02
3246 4952 1.298157 GACTTGCCATGCAGCGTGTA 61.298 55.000 13.73 0.00 40.61 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.