Multiple sequence alignment - TraesCS6D01G315300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G315300 chr6D 100.000 5268 0 0 1 5268 423748847 423754114 0.000000e+00 9729.0
1 TraesCS6D01G315300 chr6D 98.352 182 3 0 4715 4896 423765863 423766044 2.370000e-83 320.0
2 TraesCS6D01G315300 chr6D 83.516 91 10 5 4632 4717 453177897 453177987 4.370000e-11 80.5
3 TraesCS6D01G315300 chr6A 89.352 2592 157 54 1084 3643 567936472 567933968 0.000000e+00 3147.0
4 TraesCS6D01G315300 chr6A 91.226 946 56 14 3780 4718 567933931 567933006 0.000000e+00 1262.0
5 TraesCS6D01G315300 chr6A 88.731 1056 69 20 63 1090 567937552 567936519 0.000000e+00 1245.0
6 TraesCS6D01G315300 chr6A 93.956 182 11 0 4715 4896 567929196 567929015 5.200000e-70 276.0
7 TraesCS6D01G315300 chr6B 87.984 2430 158 65 1282 3643 638831460 638829097 0.000000e+00 2747.0
8 TraesCS6D01G315300 chr6B 90.691 1128 67 16 63 1169 638832630 638831520 0.000000e+00 1467.0
9 TraesCS6D01G315300 chr6B 95.244 862 38 3 3781 4642 638829061 638828203 0.000000e+00 1362.0
10 TraesCS6D01G315300 chr6B 95.604 182 8 0 4715 4896 638736291 638736110 5.160000e-75 292.0
11 TraesCS6D01G315300 chr6B 91.667 192 16 0 5070 5261 638828125 638827934 3.130000e-67 267.0
12 TraesCS6D01G315300 chr6B 95.000 160 8 0 4737 4896 638632776 638632617 8.760000e-63 252.0
13 TraesCS6D01G315300 chr6B 100.000 31 0 0 4715 4745 638684639 638684609 2.050000e-04 58.4
14 TraesCS6D01G315300 chr2D 95.833 72 3 0 3638 3709 341665948 341665877 3.330000e-22 117.0
15 TraesCS6D01G315300 chr2D 84.615 91 9 5 4632 4717 209113248 209113338 9.400000e-13 86.1
16 TraesCS6D01G315300 chr2D 88.571 70 6 2 4632 4699 595558728 595558797 3.380000e-12 84.2
17 TraesCS6D01G315300 chr1D 94.444 72 4 0 3638 3709 295954304 295954233 1.550000e-20 111.0
18 TraesCS6D01G315300 chr5B 93.243 74 5 0 3636 3709 296852668 296852595 5.580000e-20 110.0
19 TraesCS6D01G315300 chr3D 92.208 77 5 1 3634 3709 123300151 123300227 2.010000e-19 108.0
20 TraesCS6D01G315300 chr3D 95.522 67 3 0 3643 3709 420822368 420822302 2.010000e-19 108.0
21 TraesCS6D01G315300 chr3D 89.157 83 7 2 3638 3719 391258106 391258025 9.330000e-18 102.0
22 TraesCS6D01G315300 chr3D 86.022 93 11 2 3618 3709 550993735 550993826 1.210000e-16 99.0
23 TraesCS6D01G315300 chr3D 86.957 69 8 1 4632 4699 465173255 465173323 5.660000e-10 76.8
24 TraesCS6D01G315300 chr2A 92.105 76 6 0 3634 3709 16150288 16150363 2.010000e-19 108.0
25 TraesCS6D01G315300 chr4A 90.244 82 7 1 3628 3709 597739869 597739949 7.220000e-19 106.0
26 TraesCS6D01G315300 chr7D 89.855 69 6 1 4632 4699 133886993 133887061 2.610000e-13 87.9
27 TraesCS6D01G315300 chr7D 87.879 66 7 1 4635 4699 636701958 636701893 5.660000e-10 76.8
28 TraesCS6D01G315300 chr7B 90.769 65 6 0 4632 4696 439594764 439594828 2.610000e-13 87.9
29 TraesCS6D01G315300 chr2B 88.406 69 7 1 4632 4699 796832038 796831970 1.220000e-11 82.4
30 TraesCS6D01G315300 chr7A 86.957 69 7 2 4632 4698 393325188 393325256 5.660000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G315300 chr6D 423748847 423754114 5267 False 9729.00 9729 100.00000 1 5268 1 chr6D.!!$F1 5267
1 TraesCS6D01G315300 chr6A 567929015 567937552 8537 True 1482.50 3147 90.81625 63 4896 4 chr6A.!!$R1 4833
2 TraesCS6D01G315300 chr6B 638827934 638832630 4696 True 1460.75 2747 91.39650 63 5261 4 chr6B.!!$R4 5198

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
801 814 0.738762 CAGATGCAGACACACGGAGG 60.739 60.0 0.0 0.0 0.00 4.30 F
1451 1561 0.031616 TGACCCCCTGCCTTTTGTTT 60.032 50.0 0.0 0.0 0.00 2.83 F
1920 2065 0.034089 ACCCAATGGTAAGCTCTGCC 60.034 55.0 0.0 0.0 45.45 4.85 F
2429 2589 0.105658 CTCTCCCCCGGTGATTCCTA 60.106 60.0 0.0 0.0 0.00 2.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2328 2486 0.535102 AAACCAGGCCGTCTCACTTG 60.535 55.0 0.0 0.0 0.0 3.16 R
3130 3312 0.389391 CACTATACAGGGGCAGGACG 59.611 60.0 0.0 0.0 0.0 4.79 R
3458 3642 0.169009 GCAATGGAACTCTTGCGGTC 59.831 55.0 0.0 0.0 0.0 4.79 R
4297 4486 0.112995 AAGCCAAGGATGAGTTGCCA 59.887 50.0 0.0 0.0 0.0 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.907910 ATGCTTTCACTCGCATCAAC 57.092 45.000 0.00 0.00 42.83 3.18
20 21 1.882912 TGCTTTCACTCGCATCAACT 58.117 45.000 0.00 0.00 0.00 3.16
21 22 2.221169 TGCTTTCACTCGCATCAACTT 58.779 42.857 0.00 0.00 0.00 2.66
22 23 2.031769 TGCTTTCACTCGCATCAACTTG 60.032 45.455 0.00 0.00 0.00 3.16
23 24 2.031682 GCTTTCACTCGCATCAACTTGT 60.032 45.455 0.00 0.00 0.00 3.16
24 25 3.548587 CTTTCACTCGCATCAACTTGTG 58.451 45.455 0.00 0.00 0.00 3.33
25 26 2.238942 TCACTCGCATCAACTTGTGT 57.761 45.000 0.00 0.00 0.00 3.72
26 27 2.560504 TCACTCGCATCAACTTGTGTT 58.439 42.857 0.00 0.00 36.75 3.32
77 78 7.978414 TCAAACACAAAGTCATTGCTTTTATGA 59.022 29.630 14.57 0.00 43.13 2.15
106 107 8.271487 GTCCTCGTAAACAAAAAGTACACTAAG 58.729 37.037 0.00 0.00 0.00 2.18
107 108 8.196771 TCCTCGTAAACAAAAAGTACACTAAGA 58.803 33.333 0.00 0.00 0.00 2.10
109 110 9.628983 CTCGTAAACAAAAAGTACACTAAGAAC 57.371 33.333 0.00 0.00 0.00 3.01
141 142 1.726791 CACGCCACTACATTGTCACTC 59.273 52.381 0.00 0.00 0.00 3.51
155 156 1.466167 GTCACTCGCATCAACTTGCAT 59.534 47.619 0.00 0.00 42.91 3.96
211 212 7.170393 AGGAAACCAAAATTCTATAGCAACC 57.830 36.000 0.00 0.00 0.00 3.77
250 258 7.812191 GTCATGATAATGTCTGTCTCTATCACC 59.188 40.741 0.00 0.00 33.15 4.02
257 265 6.525578 TGTCTGTCTCTATCACCGTTTAAT 57.474 37.500 0.00 0.00 0.00 1.40
259 267 6.377429 TGTCTGTCTCTATCACCGTTTAATCT 59.623 38.462 0.00 0.00 0.00 2.40
260 268 7.555195 TGTCTGTCTCTATCACCGTTTAATCTA 59.445 37.037 0.00 0.00 0.00 1.98
262 270 9.788889 TCTGTCTCTATCACCGTTTAATCTATA 57.211 33.333 0.00 0.00 0.00 1.31
264 272 9.011095 TGTCTCTATCACCGTTTAATCTATAGG 57.989 37.037 0.00 0.00 0.00 2.57
266 274 7.122353 TCTCTATCACCGTTTAATCTATAGGCC 59.878 40.741 0.00 0.00 0.00 5.19
267 275 6.952358 TCTATCACCGTTTAATCTATAGGCCT 59.048 38.462 11.78 11.78 0.00 5.19
268 276 5.881923 TCACCGTTTAATCTATAGGCCTT 57.118 39.130 12.58 0.81 0.00 4.35
269 277 5.850614 TCACCGTTTAATCTATAGGCCTTC 58.149 41.667 12.58 0.00 0.00 3.46
270 278 5.601313 TCACCGTTTAATCTATAGGCCTTCT 59.399 40.000 12.58 0.61 0.00 2.85
271 279 5.927115 CACCGTTTAATCTATAGGCCTTCTC 59.073 44.000 12.58 0.00 0.00 2.87
272 280 5.162075 CCGTTTAATCTATAGGCCTTCTCG 58.838 45.833 12.58 0.00 0.00 4.04
273 281 5.048224 CCGTTTAATCTATAGGCCTTCTCGA 60.048 44.000 12.58 3.04 0.00 4.04
274 282 6.444633 CGTTTAATCTATAGGCCTTCTCGAA 58.555 40.000 12.58 0.00 0.00 3.71
275 283 6.362820 CGTTTAATCTATAGGCCTTCTCGAAC 59.637 42.308 12.58 5.76 0.00 3.95
283 291 2.093447 AGGCCTTCTCGAACAACTATGG 60.093 50.000 0.00 0.00 0.00 2.74
296 304 9.419297 TCGAACAACTATGGCATTTCTATATAC 57.581 33.333 4.78 0.00 0.00 1.47
304 312 9.911788 CTATGGCATTTCTATATACCCAAGAAT 57.088 33.333 4.78 0.00 0.00 2.40
317 325 2.907458 CAAGAATTGGTCCCCTCCTT 57.093 50.000 0.00 0.00 43.94 3.36
322 330 2.168272 ATTGGTCCCCTCCTTTGGGC 62.168 60.000 0.00 0.00 45.78 5.36
341 349 6.215495 TGGGCTAAACTATAAAACCATTGC 57.785 37.500 0.00 0.00 0.00 3.56
353 364 4.782019 AAACCATTGCGCTCTTCATAAA 57.218 36.364 9.73 0.00 0.00 1.40
408 419 8.507524 AAAGTAAACTGAGCAGTAAAAGTCTT 57.492 30.769 3.21 0.00 41.58 3.01
415 426 2.143925 GCAGTAAAAGTCTTCCACGCT 58.856 47.619 0.00 0.00 0.00 5.07
429 441 2.094390 TCCACGCTACTATGTTGTCACC 60.094 50.000 0.00 0.00 0.00 4.02
450 462 3.365666 CCAGCATCAACTTGCACAGTTAG 60.366 47.826 12.06 0.00 44.60 2.34
528 540 5.052481 ACATGGTCATGATAATGTCTGTCG 58.948 41.667 16.77 0.00 41.20 4.35
529 541 4.736126 TGGTCATGATAATGTCTGTCGT 57.264 40.909 0.00 0.00 0.00 4.34
541 553 7.201496 GATAATGTCTGTCGTTATCACGGTTTT 60.201 37.037 16.67 0.00 46.31 2.43
558 570 4.032900 CGGTTTTATCAGTCCTCACGAATG 59.967 45.833 0.00 0.00 37.93 2.67
647 660 4.473922 ACTATAAAACCACTCCCTTCTCCC 59.526 45.833 0.00 0.00 0.00 4.30
673 686 1.290009 AAAAACCCAGCTCATGCGC 59.710 52.632 0.00 0.00 45.42 6.09
674 687 1.462731 AAAAACCCAGCTCATGCGCA 61.463 50.000 14.96 14.96 45.42 6.09
675 688 1.252904 AAAACCCAGCTCATGCGCAT 61.253 50.000 19.28 19.28 45.42 4.73
676 689 1.252904 AAACCCAGCTCATGCGCATT 61.253 50.000 22.81 2.59 45.42 3.56
701 714 1.133199 ACTTGGAATTTGCTGTGGGGA 60.133 47.619 0.00 0.00 0.00 4.81
801 814 0.738762 CAGATGCAGACACACGGAGG 60.739 60.000 0.00 0.00 0.00 4.30
1062 1100 6.481643 CAAAGGTTTTCCCATCTACCTCTAA 58.518 40.000 0.00 0.00 40.03 2.10
1088 1178 4.587189 CGATCGTTCCGCCCTCCC 62.587 72.222 7.03 0.00 0.00 4.30
1139 1229 3.719186 CGCAGAACGTGAATCTTTCTTCG 60.719 47.826 0.00 0.00 35.70 3.79
1141 1231 2.737252 AGAACGTGAATCTTTCTTCGGC 59.263 45.455 0.00 0.00 31.93 5.54
1178 1268 7.946219 TGGGAGAATCTTGCATGATATTTATGT 59.054 33.333 14.86 0.00 33.73 2.29
1179 1269 8.242053 GGGAGAATCTTGCATGATATTTATGTG 58.758 37.037 14.86 0.00 33.73 3.21
1241 1335 0.467804 GCTTGAGGATCTCCCACTCC 59.532 60.000 0.00 0.00 37.41 3.85
1244 1338 0.417437 TGAGGATCTCCCACTCCCAA 59.583 55.000 0.00 0.00 37.41 4.12
1251 1345 1.850345 TCTCCCACTCCCAAACAGTTT 59.150 47.619 0.00 0.00 0.00 2.66
1252 1346 2.243736 TCTCCCACTCCCAAACAGTTTT 59.756 45.455 0.00 0.00 0.00 2.43
1278 1372 5.646577 TTTTCGAAAAAGACTCCCAAACA 57.353 34.783 20.56 0.00 0.00 2.83
1279 1373 4.893424 TTCGAAAAAGACTCCCAAACAG 57.107 40.909 0.00 0.00 0.00 3.16
1280 1374 2.616842 TCGAAAAAGACTCCCAAACAGC 59.383 45.455 0.00 0.00 0.00 4.40
1281 1375 2.618709 CGAAAAAGACTCCCAAACAGCT 59.381 45.455 0.00 0.00 0.00 4.24
1282 1376 3.548818 CGAAAAAGACTCCCAAACAGCTG 60.549 47.826 13.48 13.48 0.00 4.24
1283 1377 1.322442 AAAGACTCCCAAACAGCTGC 58.678 50.000 15.27 0.00 0.00 5.25
1284 1378 0.475906 AAGACTCCCAAACAGCTGCT 59.524 50.000 15.27 0.00 0.00 4.24
1285 1379 0.036022 AGACTCCCAAACAGCTGCTC 59.964 55.000 15.27 0.00 0.00 4.26
1286 1380 0.036022 GACTCCCAAACAGCTGCTCT 59.964 55.000 15.27 0.00 0.00 4.09
1451 1561 0.031616 TGACCCCCTGCCTTTTGTTT 60.032 50.000 0.00 0.00 0.00 2.83
1452 1562 1.218196 TGACCCCCTGCCTTTTGTTTA 59.782 47.619 0.00 0.00 0.00 2.01
1453 1563 1.616865 GACCCCCTGCCTTTTGTTTAC 59.383 52.381 0.00 0.00 0.00 2.01
1532 1653 7.469456 GCTGGTTCCTCTGTTTGTGTTAATTTA 60.469 37.037 0.00 0.00 0.00 1.40
1540 1661 7.422399 TCTGTTTGTGTTAATTTAGCCTTGTC 58.578 34.615 0.00 0.00 0.00 3.18
1558 1679 6.821665 GCCTTGTCATTTCACTAACCATAGTA 59.178 38.462 0.00 0.00 40.44 1.82
1874 2019 8.353423 ACTTTTGGTGATAAGCATTCTGTATT 57.647 30.769 0.00 0.00 0.00 1.89
1918 2063 1.755179 CCACCCAATGGTAAGCTCTG 58.245 55.000 0.00 0.00 45.57 3.35
1919 2064 1.098050 CACCCAATGGTAAGCTCTGC 58.902 55.000 0.00 0.00 45.57 4.26
1920 2065 0.034089 ACCCAATGGTAAGCTCTGCC 60.034 55.000 0.00 0.00 45.45 4.85
1921 2066 0.257039 CCCAATGGTAAGCTCTGCCT 59.743 55.000 0.00 0.00 0.00 4.75
1922 2067 1.673168 CCAATGGTAAGCTCTGCCTC 58.327 55.000 0.00 0.00 0.00 4.70
1923 2068 1.211457 CCAATGGTAAGCTCTGCCTCT 59.789 52.381 0.00 0.00 0.00 3.69
1924 2069 2.559440 CAATGGTAAGCTCTGCCTCTC 58.441 52.381 0.00 0.00 0.00 3.20
1925 2070 1.871418 ATGGTAAGCTCTGCCTCTCA 58.129 50.000 0.00 0.00 0.00 3.27
1926 2071 1.871418 TGGTAAGCTCTGCCTCTCAT 58.129 50.000 0.00 0.00 0.00 2.90
1971 2117 5.299279 GGAAACACCAAAAGAGATTCAGTCA 59.701 40.000 0.00 0.00 38.79 3.41
1987 2134 3.436704 TCAGTCATGTTCTTTGATTCCGC 59.563 43.478 0.00 0.00 0.00 5.54
2043 2190 2.101783 CAGGCTTGCATTTCATACCCA 58.898 47.619 0.00 0.00 0.00 4.51
2049 2196 5.362263 GCTTGCATTTCATACCCATTCAAT 58.638 37.500 0.00 0.00 0.00 2.57
2140 2292 2.798680 CTATCAAGTTGTCGACTCCGG 58.201 52.381 17.92 0.00 37.72 5.14
2156 2308 8.271487 GTCGACTCCGGTTATATTTTAATTCAC 58.729 37.037 8.70 0.00 36.24 3.18
2175 2327 1.689273 ACCGCTGAGGGAGCTTATAAG 59.311 52.381 8.20 8.20 46.64 1.73
2217 2372 6.810676 CAGCGCATATAGTAATCTGAAGACAT 59.189 38.462 11.47 0.00 0.00 3.06
2231 2386 2.706339 AGACATGCTGAGTGGAATCC 57.294 50.000 0.00 0.00 0.00 3.01
2240 2395 4.202398 TGCTGAGTGGAATCCCTTATCATC 60.202 45.833 0.00 0.00 0.00 2.92
2273 2428 5.183331 AGTCCATCTTGCAATGATATCATGC 59.817 40.000 18.85 21.22 36.56 4.06
2312 2467 8.601845 AAATGGGTTAGTAGTTTGCATTTTTC 57.398 30.769 0.00 0.00 0.00 2.29
2353 2511 3.101437 TGAGACGGCCTGGTTTAATCTA 58.899 45.455 0.00 0.00 0.00 1.98
2355 2513 3.869832 GAGACGGCCTGGTTTAATCTAAC 59.130 47.826 0.00 0.00 0.00 2.34
2366 2525 9.787532 CCTGGTTTAATCTAACATAAACATGTG 57.212 33.333 0.00 0.00 41.55 3.21
2429 2589 0.105658 CTCTCCCCCGGTGATTCCTA 60.106 60.000 0.00 0.00 0.00 2.94
2439 2599 3.242739 CCGGTGATTCCTAGCAAAAATCG 60.243 47.826 0.00 0.00 33.13 3.34
2447 2607 7.606456 TGATTCCTAGCAAAAATCGTCTTAACT 59.394 33.333 0.00 0.00 33.13 2.24
2451 2611 7.117812 TCCTAGCAAAAATCGTCTTAACTCAAG 59.882 37.037 0.00 0.00 35.38 3.02
2469 2629 5.132897 TCAAGCATGAATGGGTGTTAAAC 57.867 39.130 0.00 0.00 30.99 2.01
2470 2630 4.586421 TCAAGCATGAATGGGTGTTAAACA 59.414 37.500 0.00 0.00 30.99 2.83
2471 2631 5.245751 TCAAGCATGAATGGGTGTTAAACAT 59.754 36.000 0.00 0.00 30.99 2.71
2472 2632 6.435591 TCAAGCATGAATGGGTGTTAAACATA 59.564 34.615 0.00 0.00 30.99 2.29
2473 2633 6.455360 AGCATGAATGGGTGTTAAACATAG 57.545 37.500 0.00 0.00 0.00 2.23
2474 2634 5.951747 AGCATGAATGGGTGTTAAACATAGT 59.048 36.000 0.00 0.00 0.00 2.12
2475 2635 6.095440 AGCATGAATGGGTGTTAAACATAGTC 59.905 38.462 0.00 0.00 0.00 2.59
2476 2636 6.680378 GCATGAATGGGTGTTAAACATAGTCC 60.680 42.308 0.00 0.00 0.00 3.85
2477 2637 5.882040 TGAATGGGTGTTAAACATAGTCCA 58.118 37.500 0.00 0.00 0.00 4.02
2478 2638 5.708230 TGAATGGGTGTTAAACATAGTCCAC 59.292 40.000 0.00 0.00 0.00 4.02
2557 2717 6.351711 AGCAAGATACTAATGAGAATGCACA 58.648 36.000 0.00 0.00 33.89 4.57
2559 2719 7.501559 AGCAAGATACTAATGAGAATGCACAAT 59.498 33.333 0.00 0.00 33.89 2.71
2560 2720 8.133627 GCAAGATACTAATGAGAATGCACAATT 58.866 33.333 0.00 0.00 0.00 2.32
2633 2793 9.855021 GTTTTATGGTTATGAGCAATTACAGTT 57.145 29.630 0.00 0.00 36.76 3.16
2638 2798 6.072175 TGGTTATGAGCAATTACAGTTGGTTC 60.072 38.462 0.00 0.00 39.68 3.62
2759 2936 5.534207 AGTTTGCATGAACCAGATTTCAA 57.466 34.783 0.00 0.00 38.95 2.69
2774 2952 6.971184 CCAGATTTCAATTTCTTTCTCATCCG 59.029 38.462 0.00 0.00 0.00 4.18
2794 2972 6.482898 TCCGCATACCCACTAGTTTTATAA 57.517 37.500 0.00 0.00 0.00 0.98
2840 3018 5.086727 GCTGTTCTTCCTTATGCGTTAAAC 58.913 41.667 0.00 0.00 0.00 2.01
2921 3099 1.344763 AGTTATGTAGAGGCCGGATGC 59.655 52.381 5.05 0.00 40.16 3.91
3002 3181 2.672996 CGGTTGGTGCTTCCTGGG 60.673 66.667 0.00 0.00 37.07 4.45
3030 3209 7.391148 AACCTTGCTTTCGTAATCACATATT 57.609 32.000 0.00 0.00 0.00 1.28
3034 3213 9.385902 CCTTGCTTTCGTAATCACATATTTATG 57.614 33.333 0.00 0.00 39.55 1.90
3035 3214 9.385902 CTTGCTTTCGTAATCACATATTTATGG 57.614 33.333 2.85 0.00 38.00 2.74
3036 3215 7.359595 TGCTTTCGTAATCACATATTTATGGC 58.640 34.615 2.85 0.00 38.00 4.40
3039 3218 7.667043 TTCGTAATCACATATTTATGGCTCC 57.333 36.000 2.85 0.00 38.00 4.70
3041 3220 6.649141 TCGTAATCACATATTTATGGCTCCAC 59.351 38.462 2.85 0.00 38.00 4.02
3042 3221 6.128282 CGTAATCACATATTTATGGCTCCACC 60.128 42.308 2.85 0.00 38.00 4.61
3094 3276 1.608025 CGCATGTGGTGTCCTGTTAGT 60.608 52.381 0.00 0.00 0.00 2.24
3101 3283 3.056749 GTGGTGTCCTGTTAGTCACTAGG 60.057 52.174 0.00 0.00 0.00 3.02
3130 3312 4.189639 AGAGAAAGTGAATACGTGACCC 57.810 45.455 0.00 0.00 0.00 4.46
3233 3416 4.876107 AGTACCAATAGTATTGTGCAGTGC 59.124 41.667 19.18 8.58 32.28 4.40
3246 3429 3.055167 TGTGCAGTGCTACCTTGTCATAT 60.055 43.478 17.60 0.00 0.00 1.78
3272 3455 3.694566 ACGGAAGATGCCTTTAACCATTC 59.305 43.478 0.00 0.00 31.62 2.67
3297 3480 5.773680 TCCTAGGTTGGTACTATATCAGCAC 59.226 44.000 9.08 0.00 0.00 4.40
3375 3558 5.573380 ACATGAGGCATTCCTATGTACAT 57.427 39.130 13.93 13.93 44.46 2.29
3458 3642 2.203126 GAAGGAGGGGCATCTGCG 60.203 66.667 0.00 0.00 43.26 5.18
3461 3645 4.554036 GGAGGGGCATCTGCGACC 62.554 72.222 6.46 6.46 43.26 4.79
3587 3771 2.912956 AGAGGCCCAGAATAAACTCACA 59.087 45.455 0.00 0.00 0.00 3.58
3629 3814 4.261280 GCCGCTTGTCCTTTGTTTACTTTA 60.261 41.667 0.00 0.00 0.00 1.85
3632 3819 5.209977 GCTTGTCCTTTGTTTACTTTACCG 58.790 41.667 0.00 0.00 0.00 4.02
3648 3835 9.777297 TTACTTTACCGTTGTTAATTACTTCCT 57.223 29.630 0.00 0.00 0.00 3.36
3649 3836 8.315391 ACTTTACCGTTGTTAATTACTTCCTC 57.685 34.615 0.00 0.00 0.00 3.71
3650 3837 7.388776 ACTTTACCGTTGTTAATTACTTCCTCC 59.611 37.037 0.00 0.00 0.00 4.30
3651 3838 4.248058 ACCGTTGTTAATTACTTCCTCCG 58.752 43.478 0.00 0.00 0.00 4.63
3652 3839 4.248058 CCGTTGTTAATTACTTCCTCCGT 58.752 43.478 0.00 0.00 0.00 4.69
3653 3840 4.328169 CCGTTGTTAATTACTTCCTCCGTC 59.672 45.833 0.00 0.00 0.00 4.79
3654 3841 4.328169 CGTTGTTAATTACTTCCTCCGTCC 59.672 45.833 0.00 0.00 0.00 4.79
3655 3842 4.476628 TGTTAATTACTTCCTCCGTCCC 57.523 45.455 0.00 0.00 0.00 4.46
3656 3843 3.839490 TGTTAATTACTTCCTCCGTCCCA 59.161 43.478 0.00 0.00 0.00 4.37
3657 3844 4.472108 TGTTAATTACTTCCTCCGTCCCAT 59.528 41.667 0.00 0.00 0.00 4.00
3658 3845 5.662208 TGTTAATTACTTCCTCCGTCCCATA 59.338 40.000 0.00 0.00 0.00 2.74
3659 3846 6.156602 TGTTAATTACTTCCTCCGTCCCATAA 59.843 38.462 0.00 0.00 0.00 1.90
3660 3847 5.906772 AATTACTTCCTCCGTCCCATAAT 57.093 39.130 0.00 0.00 0.00 1.28
3661 3848 8.370182 GTTAATTACTTCCTCCGTCCCATAATA 58.630 37.037 0.00 0.00 0.00 0.98
3662 3849 7.569599 AATTACTTCCTCCGTCCCATAATAT 57.430 36.000 0.00 0.00 0.00 1.28
3663 3850 8.674925 AATTACTTCCTCCGTCCCATAATATA 57.325 34.615 0.00 0.00 0.00 0.86
3664 3851 8.674925 ATTACTTCCTCCGTCCCATAATATAA 57.325 34.615 0.00 0.00 0.00 0.98
3665 3852 6.607004 ACTTCCTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
3666 3853 6.320518 ACTTCCTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
3667 3854 6.437793 ACTTCCTCCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
3668 3855 4.710375 TCCTCCGTCCCATAATATAAGAGC 59.290 45.833 0.00 0.00 0.00 4.09
3669 3856 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
3670 3857 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
3671 3858 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
3672 3859 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
3673 3860 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
3674 3861 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
3675 3862 7.385752 CCGTCCCATAATATAAGAGCGTTTTTA 59.614 37.037 0.00 0.00 0.00 1.52
3676 3863 8.767085 CGTCCCATAATATAAGAGCGTTTTTAA 58.233 33.333 0.00 0.00 0.00 1.52
3677 3864 9.874215 GTCCCATAATATAAGAGCGTTTTTAAC 57.126 33.333 0.00 0.00 0.00 2.01
3678 3865 9.616156 TCCCATAATATAAGAGCGTTTTTAACA 57.384 29.630 0.00 0.00 0.00 2.41
3688 3875 8.828688 AAGAGCGTTTTTAACATTACTCTAGT 57.171 30.769 0.00 0.00 33.12 2.57
3689 3876 8.240883 AGAGCGTTTTTAACATTACTCTAGTG 57.759 34.615 0.00 0.00 31.74 2.74
3690 3877 7.871463 AGAGCGTTTTTAACATTACTCTAGTGT 59.129 33.333 2.57 2.57 31.74 3.55
3691 3878 9.132521 GAGCGTTTTTAACATTACTCTAGTGTA 57.867 33.333 0.49 0.49 0.00 2.90
3692 3879 9.480053 AGCGTTTTTAACATTACTCTAGTGTAA 57.520 29.630 17.24 17.24 36.92 2.41
3738 3927 5.324784 TCTCGCAACTTAAGAAGCTCATA 57.675 39.130 10.09 0.00 0.00 2.15
3739 3928 5.907207 TCTCGCAACTTAAGAAGCTCATAT 58.093 37.500 10.09 0.00 0.00 1.78
3740 3929 7.039313 TCTCGCAACTTAAGAAGCTCATATA 57.961 36.000 10.09 0.00 0.00 0.86
3741 3930 7.142021 TCTCGCAACTTAAGAAGCTCATATAG 58.858 38.462 10.09 4.04 0.00 1.31
3742 3931 6.806751 TCGCAACTTAAGAAGCTCATATAGT 58.193 36.000 10.09 0.00 0.00 2.12
3743 3932 6.697455 TCGCAACTTAAGAAGCTCATATAGTG 59.303 38.462 10.09 0.00 0.00 2.74
3744 3933 6.563010 CGCAACTTAAGAAGCTCATATAGTGC 60.563 42.308 10.09 0.00 37.00 4.40
3745 3934 6.293135 GCAACTTAAGAAGCTCATATAGTGCC 60.293 42.308 10.09 0.00 37.44 5.01
3746 3935 6.739331 ACTTAAGAAGCTCATATAGTGCCT 57.261 37.500 10.09 0.00 37.44 4.75
3747 3936 7.841282 ACTTAAGAAGCTCATATAGTGCCTA 57.159 36.000 10.09 0.00 37.44 3.93
3748 3937 7.891561 ACTTAAGAAGCTCATATAGTGCCTAG 58.108 38.462 10.09 0.00 37.44 3.02
3749 3938 7.726291 ACTTAAGAAGCTCATATAGTGCCTAGA 59.274 37.037 10.09 0.00 37.44 2.43
3750 3939 6.588719 AAGAAGCTCATATAGTGCCTAGAG 57.411 41.667 0.00 0.00 37.44 2.43
3751 3940 5.886609 AGAAGCTCATATAGTGCCTAGAGA 58.113 41.667 0.00 0.00 37.44 3.10
3752 3941 5.945784 AGAAGCTCATATAGTGCCTAGAGAG 59.054 44.000 0.00 0.00 37.44 3.20
3753 3942 5.512942 AGCTCATATAGTGCCTAGAGAGA 57.487 43.478 0.00 0.00 37.44 3.10
3754 3943 5.886609 AGCTCATATAGTGCCTAGAGAGAA 58.113 41.667 0.00 0.00 37.44 2.87
3755 3944 5.945784 AGCTCATATAGTGCCTAGAGAGAAG 59.054 44.000 0.00 0.00 37.44 2.85
3756 3945 5.125417 GCTCATATAGTGCCTAGAGAGAAGG 59.875 48.000 0.00 0.00 37.17 3.46
3757 3946 6.207509 TCATATAGTGCCTAGAGAGAAGGT 57.792 41.667 0.00 0.00 36.43 3.50
3758 3947 6.007076 TCATATAGTGCCTAGAGAGAAGGTG 58.993 44.000 0.00 0.00 36.43 4.00
3759 3948 1.859302 AGTGCCTAGAGAGAAGGTGG 58.141 55.000 0.00 0.00 36.43 4.61
3760 3949 0.827368 GTGCCTAGAGAGAAGGTGGG 59.173 60.000 0.00 0.00 36.43 4.61
3761 3950 0.413832 TGCCTAGAGAGAAGGTGGGT 59.586 55.000 0.00 0.00 36.43 4.51
3762 3951 0.827368 GCCTAGAGAGAAGGTGGGTG 59.173 60.000 0.00 0.00 36.43 4.61
3763 3952 0.827368 CCTAGAGAGAAGGTGGGTGC 59.173 60.000 0.00 0.00 0.00 5.01
3764 3953 1.561643 CTAGAGAGAAGGTGGGTGCA 58.438 55.000 0.00 0.00 0.00 4.57
3765 3954 1.480137 CTAGAGAGAAGGTGGGTGCAG 59.520 57.143 0.00 0.00 0.00 4.41
3766 3955 1.376553 GAGAGAAGGTGGGTGCAGC 60.377 63.158 7.55 7.55 0.00 5.25
3767 3956 2.360475 GAGAAGGTGGGTGCAGCC 60.360 66.667 28.15 28.15 0.00 4.85
3768 3957 3.177884 AGAAGGTGGGTGCAGCCA 61.178 61.111 33.13 33.13 39.65 4.75
3769 3958 2.985847 GAAGGTGGGTGCAGCCAC 60.986 66.667 45.47 45.47 41.32 5.01
3773 3962 2.750350 GTGGGTGCAGCCACTAGT 59.250 61.111 45.43 0.00 41.75 2.57
3774 3963 1.073199 GTGGGTGCAGCCACTAGTT 59.927 57.895 45.43 0.00 41.75 2.24
3775 3964 0.537371 GTGGGTGCAGCCACTAGTTT 60.537 55.000 45.43 0.00 41.75 2.66
3776 3965 0.250727 TGGGTGCAGCCACTAGTTTC 60.251 55.000 33.13 4.75 41.75 2.78
3777 3966 0.960861 GGGTGCAGCCACTAGTTTCC 60.961 60.000 29.70 1.08 41.75 3.13
3778 3967 0.960861 GGTGCAGCCACTAGTTTCCC 60.961 60.000 4.03 0.00 41.75 3.97
3804 3993 5.509498 AGTGCCTATGGTTATGTGAAATGT 58.491 37.500 0.00 0.00 0.00 2.71
4043 4232 2.588877 CGGATGGCGCGAATTCCT 60.589 61.111 12.10 0.00 0.00 3.36
4212 4401 1.726853 GACTTCTTCCACCATCACGG 58.273 55.000 0.00 0.00 42.50 4.94
4233 4422 0.820226 CACCATCTCAGCTTCTCCGA 59.180 55.000 0.00 0.00 0.00 4.55
4249 4438 2.432628 GACCACTTCGGCCAGTCG 60.433 66.667 2.24 0.00 39.03 4.18
4268 4457 1.657538 CGAGCGACCGGTATACGTAAC 60.658 57.143 7.34 2.47 42.24 2.50
4280 4469 2.610438 TACGTAACAAGGGGTCCTCT 57.390 50.000 0.00 0.00 30.89 3.69
4335 4524 3.181500 GCTTTATTTCTGGCGTGTTAGGG 60.181 47.826 0.00 0.00 0.00 3.53
4336 4525 3.706600 TTATTTCTGGCGTGTTAGGGT 57.293 42.857 0.00 0.00 0.00 4.34
4381 4570 4.989168 AGTACTACTGTTGTACTGCTTTGC 59.011 41.667 26.44 4.79 45.92 3.68
4383 4572 3.560068 ACTACTGTTGTACTGCTTTGCAC 59.440 43.478 0.00 0.00 33.79 4.57
4386 4575 1.028905 GTTGTACTGCTTTGCACCCA 58.971 50.000 0.00 0.00 33.79 4.51
4397 4586 3.679389 CTTTGCACCCACATAGTTCTCT 58.321 45.455 0.00 0.00 0.00 3.10
4411 4600 1.129437 GTTCTCTGCTTGATGTTCGGC 59.871 52.381 0.00 0.00 0.00 5.54
4441 4630 1.964373 GGTGTACTGGTGCGTTGGG 60.964 63.158 0.00 0.00 0.00 4.12
4581 4770 5.345702 TCAGCAGTTGTATATACGGTGAAC 58.654 41.667 14.22 10.29 0.00 3.18
4607 4796 2.338620 CCACGACGCCTCTTCACA 59.661 61.111 0.00 0.00 0.00 3.58
4619 4808 2.031012 TTCACACAGCTGCCTCCG 59.969 61.111 15.27 0.00 0.00 4.63
4623 4812 4.767255 CACAGCTGCCTCCGGTCC 62.767 72.222 15.27 0.00 0.00 4.46
4645 4853 2.464403 CCTCCCTTAGGGCCATGGG 61.464 68.421 13.54 18.71 43.94 4.00
4668 4876 4.191015 GGTGGATCCCGGCCCTTC 62.191 72.222 9.90 0.00 0.00 3.46
4707 4915 9.173939 CTTTGTTTTAGATGTTTCAGATGTGTC 57.826 33.333 0.00 0.00 0.00 3.67
4765 8786 5.852282 ACCATTCCCATATTTACTTGTGC 57.148 39.130 0.00 0.00 0.00 4.57
4768 8789 6.096846 ACCATTCCCATATTTACTTGTGCTTC 59.903 38.462 0.00 0.00 0.00 3.86
4770 8791 6.757897 TTCCCATATTTACTTGTGCTTCAG 57.242 37.500 0.00 0.00 0.00 3.02
4846 8867 6.992715 AGTCTATGCAATAATTGACACCCTAC 59.007 38.462 0.00 0.00 35.54 3.18
4851 8872 5.719085 TGCAATAATTGACACCCTACCAATT 59.281 36.000 0.00 0.00 41.60 2.32
4857 8878 6.850752 ATTGACACCCTACCAATTAAAAGG 57.149 37.500 0.00 0.00 0.00 3.11
4918 8939 8.891671 TTAAAAGGTACTAATATTACTGGCGG 57.108 34.615 0.00 0.00 38.49 6.13
4919 8940 5.479124 AAGGTACTAATATTACTGGCGGG 57.521 43.478 0.00 0.00 38.49 6.13
4920 8941 4.744237 AGGTACTAATATTACTGGCGGGA 58.256 43.478 0.00 0.00 36.02 5.14
4921 8942 4.771054 AGGTACTAATATTACTGGCGGGAG 59.229 45.833 0.00 0.00 36.02 4.30
4922 8943 4.081807 GGTACTAATATTACTGGCGGGAGG 60.082 50.000 0.00 0.00 0.00 4.30
4923 8944 2.904434 ACTAATATTACTGGCGGGAGGG 59.096 50.000 0.00 0.00 0.00 4.30
4924 8945 0.400594 AATATTACTGGCGGGAGGGC 59.599 55.000 0.00 0.00 42.69 5.19
4925 8946 0.473886 ATATTACTGGCGGGAGGGCT 60.474 55.000 0.00 0.00 42.84 5.19
4926 8947 0.693092 TATTACTGGCGGGAGGGCTT 60.693 55.000 0.00 0.00 42.84 4.35
4927 8948 1.571773 ATTACTGGCGGGAGGGCTTT 61.572 55.000 0.00 0.00 42.84 3.51
4928 8949 2.478335 TTACTGGCGGGAGGGCTTTG 62.478 60.000 0.00 0.00 42.84 2.77
4929 8950 4.351054 CTGGCGGGAGGGCTTTGT 62.351 66.667 0.00 0.00 42.84 2.83
4930 8951 3.868200 CTGGCGGGAGGGCTTTGTT 62.868 63.158 0.00 0.00 42.84 2.83
4931 8952 2.600470 GGCGGGAGGGCTTTGTTT 60.600 61.111 0.00 0.00 38.40 2.83
4932 8953 2.207229 GGCGGGAGGGCTTTGTTTT 61.207 57.895 0.00 0.00 38.40 2.43
4933 8954 0.896479 GGCGGGAGGGCTTTGTTTTA 60.896 55.000 0.00 0.00 38.40 1.52
4934 8955 0.963225 GCGGGAGGGCTTTGTTTTAA 59.037 50.000 0.00 0.00 0.00 1.52
4935 8956 1.341852 GCGGGAGGGCTTTGTTTTAAA 59.658 47.619 0.00 0.00 0.00 1.52
4936 8957 2.028476 GCGGGAGGGCTTTGTTTTAAAT 60.028 45.455 0.00 0.00 0.00 1.40
4937 8958 3.193903 GCGGGAGGGCTTTGTTTTAAATA 59.806 43.478 0.00 0.00 0.00 1.40
4938 8959 4.322123 GCGGGAGGGCTTTGTTTTAAATAA 60.322 41.667 0.00 0.00 0.00 1.40
4939 8960 5.785243 CGGGAGGGCTTTGTTTTAAATAAA 58.215 37.500 0.15 0.15 0.00 1.40
4940 8961 5.867174 CGGGAGGGCTTTGTTTTAAATAAAG 59.133 40.000 18.33 18.33 41.04 1.85
4941 8962 6.170506 GGGAGGGCTTTGTTTTAAATAAAGG 58.829 40.000 22.03 9.29 39.24 3.11
4942 8963 6.170506 GGAGGGCTTTGTTTTAAATAAAGGG 58.829 40.000 22.03 5.72 39.24 3.95
4943 8964 6.014070 GGAGGGCTTTGTTTTAAATAAAGGGA 60.014 38.462 22.03 0.00 39.24 4.20
4944 8965 7.381789 AGGGCTTTGTTTTAAATAAAGGGAA 57.618 32.000 22.03 0.00 39.24 3.97
4945 8966 7.984475 AGGGCTTTGTTTTAAATAAAGGGAAT 58.016 30.769 22.03 0.00 39.24 3.01
4946 8967 7.882791 AGGGCTTTGTTTTAAATAAAGGGAATG 59.117 33.333 22.03 4.02 39.24 2.67
4947 8968 7.880713 GGGCTTTGTTTTAAATAAAGGGAATGA 59.119 33.333 22.03 0.00 39.24 2.57
4948 8969 8.717821 GGCTTTGTTTTAAATAAAGGGAATGAC 58.282 33.333 22.03 8.59 39.24 3.06
4949 8970 9.267084 GCTTTGTTTTAAATAAAGGGAATGACA 57.733 29.630 22.03 3.34 39.24 3.58
4953 8974 9.771534 TGTTTTAAATAAAGGGAATGACAAAGG 57.228 29.630 0.00 0.00 0.00 3.11
4954 8975 9.214957 GTTTTAAATAAAGGGAATGACAAAGGG 57.785 33.333 0.00 0.00 0.00 3.95
4955 8976 7.489239 TTAAATAAAGGGAATGACAAAGGGG 57.511 36.000 0.00 0.00 0.00 4.79
4956 8977 2.325661 AAAGGGAATGACAAAGGGGG 57.674 50.000 0.00 0.00 0.00 5.40
4957 8978 0.252239 AAGGGAATGACAAAGGGGGC 60.252 55.000 0.00 0.00 0.00 5.80
4958 8979 1.078347 GGGAATGACAAAGGGGGCA 59.922 57.895 0.00 0.00 0.00 5.36
4959 8980 1.257750 GGGAATGACAAAGGGGGCAC 61.258 60.000 0.00 0.00 0.00 5.01
4960 8981 0.541764 GGAATGACAAAGGGGGCACA 60.542 55.000 0.00 0.00 0.00 4.57
4961 8982 1.560505 GAATGACAAAGGGGGCACAT 58.439 50.000 0.00 0.00 0.00 3.21
4962 8983 2.622977 GGAATGACAAAGGGGGCACATA 60.623 50.000 0.00 0.00 0.00 2.29
4963 8984 2.917713 ATGACAAAGGGGGCACATAA 57.082 45.000 0.00 0.00 0.00 1.90
4964 8985 1.917872 TGACAAAGGGGGCACATAAC 58.082 50.000 0.00 0.00 0.00 1.89
4965 8986 1.182667 GACAAAGGGGGCACATAACC 58.817 55.000 0.00 0.00 0.00 2.85
4966 8987 0.610785 ACAAAGGGGGCACATAACCG 60.611 55.000 0.00 0.00 0.00 4.44
4967 8988 0.610785 CAAAGGGGGCACATAACCGT 60.611 55.000 0.00 0.00 0.00 4.83
4968 8989 0.610785 AAAGGGGGCACATAACCGTG 60.611 55.000 0.00 0.00 40.00 4.94
4969 8990 1.785353 AAGGGGGCACATAACCGTGT 61.785 55.000 0.00 0.00 39.19 4.49
4970 8991 0.910566 AGGGGGCACATAACCGTGTA 60.911 55.000 0.00 0.00 39.19 2.90
4971 8992 0.035247 GGGGGCACATAACCGTGTAA 60.035 55.000 0.00 0.00 39.19 2.41
4972 8993 1.409101 GGGGGCACATAACCGTGTAAT 60.409 52.381 0.00 0.00 39.19 1.89
4973 8994 1.944709 GGGGCACATAACCGTGTAATC 59.055 52.381 0.00 0.00 39.19 1.75
4974 8995 2.634600 GGGCACATAACCGTGTAATCA 58.365 47.619 0.00 0.00 39.19 2.57
4975 8996 2.353579 GGGCACATAACCGTGTAATCAC 59.646 50.000 0.00 0.00 39.19 3.06
4976 8997 3.267483 GGCACATAACCGTGTAATCACT 58.733 45.455 0.00 0.00 41.89 3.41
4977 8998 4.435425 GGCACATAACCGTGTAATCACTA 58.565 43.478 0.00 0.00 41.89 2.74
4978 8999 4.871557 GGCACATAACCGTGTAATCACTAA 59.128 41.667 0.00 0.00 41.89 2.24
4979 9000 5.220529 GGCACATAACCGTGTAATCACTAAC 60.221 44.000 0.00 0.00 41.89 2.34
4980 9001 5.579511 GCACATAACCGTGTAATCACTAACT 59.420 40.000 0.00 0.00 41.89 2.24
4981 9002 6.455113 GCACATAACCGTGTAATCACTAACTG 60.455 42.308 0.00 0.00 41.89 3.16
4982 9003 6.809689 CACATAACCGTGTAATCACTAACTGA 59.190 38.462 0.00 0.00 41.89 3.41
4983 9004 7.491372 CACATAACCGTGTAATCACTAACTGAT 59.509 37.037 0.00 0.00 41.89 2.90
4984 9005 7.705325 ACATAACCGTGTAATCACTAACTGATC 59.295 37.037 0.00 0.00 38.82 2.92
4985 9006 5.916661 ACCGTGTAATCACTAACTGATCT 57.083 39.130 0.00 0.00 38.82 2.75
4986 9007 7.400599 AACCGTGTAATCACTAACTGATCTA 57.599 36.000 0.00 0.00 38.82 1.98
4987 9008 6.793349 ACCGTGTAATCACTAACTGATCTAC 58.207 40.000 0.00 0.00 38.82 2.59
4988 9009 5.907945 CCGTGTAATCACTAACTGATCTACG 59.092 44.000 0.00 0.00 38.82 3.51
4989 9010 6.457934 CCGTGTAATCACTAACTGATCTACGT 60.458 42.308 0.00 0.00 38.82 3.57
4990 9011 7.254556 CCGTGTAATCACTAACTGATCTACGTA 60.255 40.741 0.00 0.00 38.82 3.57
4991 9012 7.792967 CGTGTAATCACTAACTGATCTACGTAG 59.207 40.741 16.73 16.73 38.82 3.51
4992 9013 8.610896 GTGTAATCACTAACTGATCTACGTAGT 58.389 37.037 21.53 9.65 41.38 2.73
4993 9014 9.170734 TGTAATCACTAACTGATCTACGTAGTT 57.829 33.333 21.53 14.00 39.59 2.24
4995 9016 8.912787 AATCACTAACTGATCTACGTAGTTTG 57.087 34.615 21.53 13.81 39.59 2.93
4996 9017 7.677454 TCACTAACTGATCTACGTAGTTTGA 57.323 36.000 21.53 9.81 37.78 2.69
4997 9018 8.277490 TCACTAACTGATCTACGTAGTTTGAT 57.723 34.615 21.53 8.52 37.78 2.57
4998 9019 8.396390 TCACTAACTGATCTACGTAGTTTGATC 58.604 37.037 21.53 16.72 37.78 2.92
4999 9020 8.399425 CACTAACTGATCTACGTAGTTTGATCT 58.601 37.037 21.53 5.51 43.95 2.75
5000 9021 8.958506 ACTAACTGATCTACGTAGTTTGATCTT 58.041 33.333 21.53 10.92 43.95 2.40
5001 9022 9.790389 CTAACTGATCTACGTAGTTTGATCTTT 57.210 33.333 21.53 15.03 43.95 2.52
5006 9027 9.031360 TGATCTACGTAGTTTGATCTTTTATGC 57.969 33.333 21.53 0.00 43.95 3.14
5007 9028 9.250624 GATCTACGTAGTTTGATCTTTTATGCT 57.749 33.333 21.53 0.00 37.78 3.79
5008 9029 8.407457 TCTACGTAGTTTGATCTTTTATGCTG 57.593 34.615 21.53 0.00 37.78 4.41
5009 9030 6.422776 ACGTAGTTTGATCTTTTATGCTGG 57.577 37.500 0.00 0.00 37.78 4.85
5010 9031 6.170506 ACGTAGTTTGATCTTTTATGCTGGA 58.829 36.000 0.00 0.00 37.78 3.86
5011 9032 6.313905 ACGTAGTTTGATCTTTTATGCTGGAG 59.686 38.462 0.00 0.00 37.78 3.86
5012 9033 6.535150 CGTAGTTTGATCTTTTATGCTGGAGA 59.465 38.462 0.00 0.00 0.00 3.71
5013 9034 7.225538 CGTAGTTTGATCTTTTATGCTGGAGAT 59.774 37.037 0.00 0.00 0.00 2.75
5014 9035 9.547753 GTAGTTTGATCTTTTATGCTGGAGATA 57.452 33.333 0.00 0.00 0.00 1.98
5016 9037 9.466497 AGTTTGATCTTTTATGCTGGAGATAAA 57.534 29.630 0.00 0.00 0.00 1.40
5017 9038 9.727627 GTTTGATCTTTTATGCTGGAGATAAAG 57.272 33.333 0.00 0.00 29.28 1.85
5018 9039 8.455903 TTGATCTTTTATGCTGGAGATAAAGG 57.544 34.615 0.00 0.00 29.28 3.11
5019 9040 7.000472 TGATCTTTTATGCTGGAGATAAAGGG 59.000 38.462 0.00 0.00 29.28 3.95
5020 9041 5.694995 TCTTTTATGCTGGAGATAAAGGGG 58.305 41.667 0.00 0.00 29.28 4.79
5021 9042 4.453480 TTTATGCTGGAGATAAAGGGGG 57.547 45.455 0.00 0.00 0.00 5.40
5022 9043 0.480252 ATGCTGGAGATAAAGGGGGC 59.520 55.000 0.00 0.00 0.00 5.80
5023 9044 0.918799 TGCTGGAGATAAAGGGGGCA 60.919 55.000 0.00 0.00 0.00 5.36
5024 9045 0.466372 GCTGGAGATAAAGGGGGCAC 60.466 60.000 0.00 0.00 0.00 5.01
5025 9046 0.918983 CTGGAGATAAAGGGGGCACA 59.081 55.000 0.00 0.00 0.00 4.57
5026 9047 1.496429 CTGGAGATAAAGGGGGCACAT 59.504 52.381 0.00 0.00 0.00 3.21
5027 9048 2.711009 CTGGAGATAAAGGGGGCACATA 59.289 50.000 0.00 0.00 0.00 2.29
5028 9049 2.711009 TGGAGATAAAGGGGGCACATAG 59.289 50.000 0.00 0.00 0.00 2.23
5029 9050 2.553247 GGAGATAAAGGGGGCACATAGC 60.553 54.545 0.00 0.00 44.65 2.97
5041 9062 3.056952 GCACATAGCACGAGAAATTGG 57.943 47.619 0.00 0.00 44.79 3.16
5042 9063 2.677836 GCACATAGCACGAGAAATTGGA 59.322 45.455 0.00 0.00 44.79 3.53
5043 9064 3.485877 GCACATAGCACGAGAAATTGGAC 60.486 47.826 0.00 0.00 44.79 4.02
5044 9065 2.930040 ACATAGCACGAGAAATTGGACG 59.070 45.455 0.00 0.00 0.00 4.79
5045 9066 2.004583 TAGCACGAGAAATTGGACGG 57.995 50.000 0.00 0.00 0.00 4.79
5046 9067 0.673644 AGCACGAGAAATTGGACGGG 60.674 55.000 0.00 0.00 0.00 5.28
5047 9068 0.672401 GCACGAGAAATTGGACGGGA 60.672 55.000 0.00 0.00 0.00 5.14
5048 9069 1.076332 CACGAGAAATTGGACGGGAC 58.924 55.000 0.00 0.00 0.00 4.46
5049 9070 0.682852 ACGAGAAATTGGACGGGACA 59.317 50.000 0.00 0.00 0.00 4.02
5050 9071 1.337823 ACGAGAAATTGGACGGGACAG 60.338 52.381 0.00 0.00 0.00 3.51
5051 9072 1.337823 CGAGAAATTGGACGGGACAGT 60.338 52.381 0.00 0.00 0.00 3.55
5052 9073 2.779506 GAGAAATTGGACGGGACAGTT 58.220 47.619 0.00 0.00 0.00 3.16
5053 9074 3.146847 GAGAAATTGGACGGGACAGTTT 58.853 45.455 0.00 0.00 31.62 2.66
5054 9075 3.562182 AGAAATTGGACGGGACAGTTTT 58.438 40.909 0.00 0.00 29.53 2.43
5055 9076 3.317993 AGAAATTGGACGGGACAGTTTTG 59.682 43.478 0.00 0.00 29.53 2.44
5056 9077 2.649531 ATTGGACGGGACAGTTTTGA 57.350 45.000 0.00 0.00 0.00 2.69
5057 9078 2.421751 TTGGACGGGACAGTTTTGAA 57.578 45.000 0.00 0.00 0.00 2.69
5058 9079 1.961793 TGGACGGGACAGTTTTGAAG 58.038 50.000 0.00 0.00 0.00 3.02
5059 9080 0.591659 GGACGGGACAGTTTTGAAGC 59.408 55.000 0.00 0.00 0.00 3.86
5060 9081 0.234884 GACGGGACAGTTTTGAAGCG 59.765 55.000 0.00 0.00 0.00 4.68
5061 9082 0.179067 ACGGGACAGTTTTGAAGCGA 60.179 50.000 0.00 0.00 0.00 4.93
5062 9083 0.512952 CGGGACAGTTTTGAAGCGAG 59.487 55.000 0.00 0.00 0.00 5.03
5063 9084 1.872237 CGGGACAGTTTTGAAGCGAGA 60.872 52.381 0.00 0.00 0.00 4.04
5064 9085 2.427506 GGGACAGTTTTGAAGCGAGAT 58.572 47.619 0.00 0.00 0.00 2.75
5065 9086 3.596214 GGGACAGTTTTGAAGCGAGATA 58.404 45.455 0.00 0.00 0.00 1.98
5066 9087 4.192317 GGGACAGTTTTGAAGCGAGATAT 58.808 43.478 0.00 0.00 0.00 1.63
5067 9088 4.271291 GGGACAGTTTTGAAGCGAGATATC 59.729 45.833 0.00 0.00 0.00 1.63
5068 9089 4.870426 GGACAGTTTTGAAGCGAGATATCA 59.130 41.667 5.32 0.00 0.00 2.15
5069 9090 5.006165 GGACAGTTTTGAAGCGAGATATCAG 59.994 44.000 5.32 0.00 0.00 2.90
5070 9091 4.872691 ACAGTTTTGAAGCGAGATATCAGG 59.127 41.667 5.32 0.00 0.00 3.86
5071 9092 4.872691 CAGTTTTGAAGCGAGATATCAGGT 59.127 41.667 5.32 1.28 0.00 4.00
5072 9093 5.352569 CAGTTTTGAAGCGAGATATCAGGTT 59.647 40.000 13.16 13.16 0.00 3.50
5073 9094 5.940470 AGTTTTGAAGCGAGATATCAGGTTT 59.060 36.000 14.08 6.11 0.00 3.27
5074 9095 5.801350 TTTGAAGCGAGATATCAGGTTTG 57.199 39.130 14.08 0.00 0.00 2.93
5075 9096 4.471904 TGAAGCGAGATATCAGGTTTGT 57.528 40.909 14.08 0.00 0.00 2.83
5076 9097 5.592104 TGAAGCGAGATATCAGGTTTGTA 57.408 39.130 14.08 5.11 0.00 2.41
5077 9098 6.161855 TGAAGCGAGATATCAGGTTTGTAT 57.838 37.500 14.08 0.00 0.00 2.29
5078 9099 6.216569 TGAAGCGAGATATCAGGTTTGTATC 58.783 40.000 14.08 5.21 0.00 2.24
5079 9100 5.140747 AGCGAGATATCAGGTTTGTATCC 57.859 43.478 5.32 0.00 0.00 2.59
5080 9101 4.835615 AGCGAGATATCAGGTTTGTATCCT 59.164 41.667 5.32 0.00 35.45 3.24
5087 9108 3.199880 CAGGTTTGTATCCTGCCTAGG 57.800 52.381 3.67 3.67 44.46 3.02
5118 9139 1.648467 GCGGCGGCTCTCTGAAAATT 61.648 55.000 9.78 0.00 35.83 1.82
5142 9163 1.911702 AAAGTTCTCCCGGCTAGCCC 61.912 60.000 28.09 11.90 0.00 5.19
5143 9164 3.862991 GTTCTCCCGGCTAGCCCC 61.863 72.222 28.09 4.38 0.00 5.80
5193 9214 1.208535 TGAACGTGTGGAGGTTGTCTT 59.791 47.619 0.00 0.00 30.31 3.01
5197 9218 0.106149 GTGTGGAGGTTGTCTTCGGT 59.894 55.000 0.00 0.00 0.00 4.69
5203 9224 3.025262 GGAGGTTGTCTTCGGTAGATCT 58.975 50.000 0.00 0.00 34.79 2.75
5212 9233 5.163642 TGTCTTCGGTAGATCTGTCTTTAGC 60.164 44.000 5.18 0.00 35.87 3.09
5214 9235 2.617308 TCGGTAGATCTGTCTTTAGCGG 59.383 50.000 5.18 0.00 35.64 5.52
5261 9282 8.328146 CGATCATCTACGTTTATGTGTTTTCAT 58.672 33.333 0.00 0.00 0.00 2.57
5262 9283 9.638300 GATCATCTACGTTTATGTGTTTTCATC 57.362 33.333 0.00 0.00 0.00 2.92
5263 9284 7.671827 TCATCTACGTTTATGTGTTTTCATCG 58.328 34.615 0.00 0.00 0.00 3.84
5264 9285 7.542824 TCATCTACGTTTATGTGTTTTCATCGA 59.457 33.333 0.00 0.00 0.00 3.59
5265 9286 7.041187 TCTACGTTTATGTGTTTTCATCGAC 57.959 36.000 0.00 0.00 0.00 4.20
5266 9287 4.694177 ACGTTTATGTGTTTTCATCGACG 58.306 39.130 0.00 0.00 39.61 5.12
5267 9288 4.079028 CGTTTATGTGTTTTCATCGACGG 58.921 43.478 0.00 0.00 35.10 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.031682 ACAAGTTGATGCGAGTGAAAGC 60.032 45.455 10.54 0.00 0.00 3.51
3 4 3.002656 ACACAAGTTGATGCGAGTGAAAG 59.997 43.478 10.54 0.00 0.00 2.62
4 5 2.942376 ACACAAGTTGATGCGAGTGAAA 59.058 40.909 10.54 0.00 0.00 2.69
5 6 2.560504 ACACAAGTTGATGCGAGTGAA 58.439 42.857 10.54 0.00 0.00 3.18
6 7 2.238942 ACACAAGTTGATGCGAGTGA 57.761 45.000 10.54 0.00 0.00 3.41
37 38 9.841295 ACTTTGTGTTTGAAGAAGTATTAGGTA 57.159 29.630 0.00 0.00 0.00 3.08
38 39 8.747538 ACTTTGTGTTTGAAGAAGTATTAGGT 57.252 30.769 0.00 0.00 0.00 3.08
39 40 8.836413 TGACTTTGTGTTTGAAGAAGTATTAGG 58.164 33.333 0.00 0.00 31.24 2.69
42 43 9.520204 CAATGACTTTGTGTTTGAAGAAGTATT 57.480 29.630 0.00 0.00 31.24 1.89
43 44 7.649306 GCAATGACTTTGTGTTTGAAGAAGTAT 59.351 33.333 3.32 0.00 37.65 2.12
44 45 6.972328 GCAATGACTTTGTGTTTGAAGAAGTA 59.028 34.615 3.32 0.00 37.65 2.24
45 46 5.807011 GCAATGACTTTGTGTTTGAAGAAGT 59.193 36.000 3.32 0.00 37.65 3.01
46 47 6.038356 AGCAATGACTTTGTGTTTGAAGAAG 58.962 36.000 3.32 0.00 37.65 2.85
47 48 5.964758 AGCAATGACTTTGTGTTTGAAGAA 58.035 33.333 3.32 0.00 37.65 2.52
48 49 5.581126 AGCAATGACTTTGTGTTTGAAGA 57.419 34.783 3.32 0.00 37.65 2.87
49 50 6.651755 AAAGCAATGACTTTGTGTTTGAAG 57.348 33.333 3.32 0.00 38.43 3.02
50 51 8.602328 CATAAAAGCAATGACTTTGTGTTTGAA 58.398 29.630 3.32 0.00 39.76 2.69
51 52 7.978414 TCATAAAAGCAATGACTTTGTGTTTGA 59.022 29.630 3.32 0.00 39.76 2.69
52 53 8.057742 GTCATAAAAGCAATGACTTTGTGTTTG 58.942 33.333 8.57 0.00 46.33 2.93
53 54 8.130307 GTCATAAAAGCAATGACTTTGTGTTT 57.870 30.769 8.57 6.27 46.33 2.83
54 55 7.698836 GTCATAAAAGCAATGACTTTGTGTT 57.301 32.000 8.57 0.00 46.33 3.32
77 78 6.036408 GTGTACTTTTTGTTTACGAGGACTGT 59.964 38.462 0.00 0.00 0.00 3.55
106 107 4.156008 AGTGGCGTGAAGATATTTTGGTTC 59.844 41.667 0.00 0.00 0.00 3.62
107 108 4.079253 AGTGGCGTGAAGATATTTTGGTT 58.921 39.130 0.00 0.00 0.00 3.67
109 110 4.634004 TGTAGTGGCGTGAAGATATTTTGG 59.366 41.667 0.00 0.00 0.00 3.28
220 228 7.751768 AGAGACAGACATTATCATGACGATA 57.248 36.000 0.00 0.00 35.39 2.92
224 232 7.812191 GGTGATAGAGACAGACATTATCATGAC 59.188 40.741 0.00 0.00 34.40 3.06
250 258 6.010294 TCGAGAAGGCCTATAGATTAAACG 57.990 41.667 5.16 0.99 0.00 3.60
257 265 4.279145 AGTTGTTCGAGAAGGCCTATAGA 58.721 43.478 5.16 0.29 0.00 1.98
259 267 5.010719 CCATAGTTGTTCGAGAAGGCCTATA 59.989 44.000 5.16 0.00 0.00 1.31
260 268 4.202264 CCATAGTTGTTCGAGAAGGCCTAT 60.202 45.833 5.16 0.00 0.00 2.57
262 270 2.093447 CCATAGTTGTTCGAGAAGGCCT 60.093 50.000 0.00 0.00 0.00 5.19
263 271 2.280628 CCATAGTTGTTCGAGAAGGCC 58.719 52.381 0.00 0.00 0.00 5.19
264 272 1.666189 GCCATAGTTGTTCGAGAAGGC 59.334 52.381 0.00 0.00 0.00 4.35
266 274 5.352569 AGAAATGCCATAGTTGTTCGAGAAG 59.647 40.000 0.00 0.00 0.00 2.85
267 275 5.245531 AGAAATGCCATAGTTGTTCGAGAA 58.754 37.500 0.00 0.00 0.00 2.87
268 276 4.832248 AGAAATGCCATAGTTGTTCGAGA 58.168 39.130 0.00 0.00 0.00 4.04
269 277 6.851222 ATAGAAATGCCATAGTTGTTCGAG 57.149 37.500 0.00 0.00 0.00 4.04
270 278 9.419297 GTATATAGAAATGCCATAGTTGTTCGA 57.581 33.333 0.00 0.00 0.00 3.71
271 279 8.656849 GGTATATAGAAATGCCATAGTTGTTCG 58.343 37.037 0.00 0.00 32.33 3.95
272 280 8.947115 GGGTATATAGAAATGCCATAGTTGTTC 58.053 37.037 0.00 0.00 33.59 3.18
273 281 8.444783 TGGGTATATAGAAATGCCATAGTTGTT 58.555 33.333 0.00 0.00 33.59 2.83
274 282 7.984475 TGGGTATATAGAAATGCCATAGTTGT 58.016 34.615 0.00 0.00 33.59 3.32
275 283 8.862325 TTGGGTATATAGAAATGCCATAGTTG 57.138 34.615 0.00 0.00 33.59 3.16
316 324 7.100409 GCAATGGTTTTATAGTTTAGCCCAAA 58.900 34.615 0.00 0.00 0.00 3.28
317 325 6.626181 CGCAATGGTTTTATAGTTTAGCCCAA 60.626 38.462 0.00 0.00 0.00 4.12
322 330 7.016361 AGAGCGCAATGGTTTTATAGTTTAG 57.984 36.000 11.47 0.00 0.00 1.85
371 382 7.925483 TGCTCAGTTTACTTTTTACCGTAGTTA 59.075 33.333 0.00 0.00 0.00 2.24
408 419 2.094390 GGTGACAACATAGTAGCGTGGA 60.094 50.000 0.00 0.00 0.00 4.02
415 426 4.817318 TGATGCTGGTGACAACATAGTA 57.183 40.909 0.00 0.00 46.69 1.82
450 462 6.594159 TCGAGAGAAAGTAATGGGTGAATTTC 59.406 38.462 0.00 0.00 37.03 2.17
528 540 6.035758 GTGAGGACTGATAAAACCGTGATAAC 59.964 42.308 0.00 0.00 0.00 1.89
529 541 6.103997 GTGAGGACTGATAAAACCGTGATAA 58.896 40.000 0.00 0.00 0.00 1.75
541 553 5.127031 TCATTGTCATTCGTGAGGACTGATA 59.873 40.000 0.00 0.00 36.80 2.15
543 555 3.258123 TCATTGTCATTCGTGAGGACTGA 59.742 43.478 7.58 0.00 32.50 3.41
547 559 4.206477 ACATCATTGTCATTCGTGAGGA 57.794 40.909 0.00 0.00 0.00 3.71
558 570 4.074259 TGGGCATATGCTACATCATTGTC 58.926 43.478 26.12 5.71 41.70 3.18
660 673 2.411701 CAATGCGCATGAGCTGGG 59.588 61.111 26.09 7.59 40.65 4.45
670 683 1.431496 ATTCCAAGTTTGCAATGCGC 58.569 45.000 0.00 0.00 42.89 6.09
671 684 3.801293 CAAATTCCAAGTTTGCAATGCG 58.199 40.909 0.00 0.00 30.75 4.73
701 714 5.360429 AGAAAAATGCAAATGGTTTGGCTTT 59.640 32.000 0.00 0.00 40.94 3.51
801 814 4.908736 TCAGCTCTTATTTTATTGTGCGC 58.091 39.130 0.00 0.00 0.00 6.09
831 844 5.022787 TCCCTTTTATCCATTGTTCCAAGG 58.977 41.667 0.00 0.00 0.00 3.61
854 867 1.821061 CGTCACTCCACTTGGGCTCT 61.821 60.000 0.00 0.00 36.21 4.09
902 928 1.294780 CTTTGCGCTCCCTCTCTGT 59.705 57.895 9.73 0.00 0.00 3.41
903 929 1.449246 CCTTTGCGCTCCCTCTCTG 60.449 63.158 9.73 0.00 0.00 3.35
1088 1178 1.655654 CATCTAGCAGGACGACGCG 60.656 63.158 3.53 3.53 0.00 6.01
1139 1229 4.344865 TCCCAGCCAAGAACCGCC 62.345 66.667 0.00 0.00 0.00 6.13
1141 1231 0.035056 ATTCTCCCAGCCAAGAACCG 60.035 55.000 0.00 0.00 34.52 4.44
1178 1268 2.964464 ACTGACATGCAAACCAAATCCA 59.036 40.909 0.00 0.00 0.00 3.41
1179 1269 3.578688 GACTGACATGCAAACCAAATCC 58.421 45.455 0.00 0.00 0.00 3.01
1259 1353 2.616842 GCTGTTTGGGAGTCTTTTTCGA 59.383 45.455 0.00 0.00 0.00 3.71
1260 1354 2.618709 AGCTGTTTGGGAGTCTTTTTCG 59.381 45.455 0.00 0.00 0.00 3.46
1261 1355 3.796844 GCAGCTGTTTGGGAGTCTTTTTC 60.797 47.826 16.64 0.00 0.00 2.29
1262 1356 2.101415 GCAGCTGTTTGGGAGTCTTTTT 59.899 45.455 16.64 0.00 0.00 1.94
1263 1357 1.683385 GCAGCTGTTTGGGAGTCTTTT 59.317 47.619 16.64 0.00 0.00 2.27
1264 1358 1.133668 AGCAGCTGTTTGGGAGTCTTT 60.134 47.619 16.64 0.00 0.00 2.52
1265 1359 0.475906 AGCAGCTGTTTGGGAGTCTT 59.524 50.000 16.64 0.00 0.00 3.01
1266 1360 0.036022 GAGCAGCTGTTTGGGAGTCT 59.964 55.000 16.64 0.00 0.00 3.24
1267 1361 0.036022 AGAGCAGCTGTTTGGGAGTC 59.964 55.000 16.64 0.00 0.00 3.36
1268 1362 0.250640 CAGAGCAGCTGTTTGGGAGT 60.251 55.000 16.64 0.00 39.85 3.85
1269 1363 2.552802 CAGAGCAGCTGTTTGGGAG 58.447 57.895 16.64 0.00 39.85 4.30
1270 1364 4.806936 CAGAGCAGCTGTTTGGGA 57.193 55.556 16.64 0.00 39.85 4.37
1276 1370 8.526147 AAATTATGAAATTAACAGAGCAGCTGT 58.474 29.630 16.64 6.44 45.82 4.40
1277 1371 8.804743 CAAATTATGAAATTAACAGAGCAGCTG 58.195 33.333 10.11 10.11 41.22 4.24
1278 1372 8.742777 TCAAATTATGAAATTAACAGAGCAGCT 58.257 29.630 0.00 0.00 34.12 4.24
1279 1373 8.915871 TCAAATTATGAAATTAACAGAGCAGC 57.084 30.769 0.00 0.00 34.12 5.25
1281 1375 9.806203 CCATCAAATTATGAAATTAACAGAGCA 57.194 29.630 0.00 0.00 42.54 4.26
1282 1376 9.807649 ACCATCAAATTATGAAATTAACAGAGC 57.192 29.630 0.00 0.00 42.54 4.09
1288 1382 9.650539 CCACACACCATCAAATTATGAAATTAA 57.349 29.630 0.00 0.00 42.54 1.40
1289 1383 9.029368 TCCACACACCATCAAATTATGAAATTA 57.971 29.630 0.00 0.00 42.54 1.40
1290 1384 7.905265 TCCACACACCATCAAATTATGAAATT 58.095 30.769 0.00 0.00 42.54 1.82
1291 1385 7.479352 TCCACACACCATCAAATTATGAAAT 57.521 32.000 0.00 0.00 42.54 2.17
1292 1386 6.907853 TCCACACACCATCAAATTATGAAA 57.092 33.333 0.00 0.00 42.54 2.69
1293 1387 7.479352 AATCCACACACCATCAAATTATGAA 57.521 32.000 0.00 0.00 42.54 2.57
1294 1388 7.321908 CAAATCCACACACCATCAAATTATGA 58.678 34.615 0.00 0.00 43.67 2.15
1295 1389 6.535865 CCAAATCCACACACCATCAAATTATG 59.464 38.462 0.00 0.00 0.00 1.90
1296 1390 6.352051 CCCAAATCCACACACCATCAAATTAT 60.352 38.462 0.00 0.00 0.00 1.28
1297 1391 5.046735 CCCAAATCCACACACCATCAAATTA 60.047 40.000 0.00 0.00 0.00 1.40
1468 1578 3.637694 GGGGCAAGGTTGTTAACTGTTTA 59.362 43.478 7.22 0.00 0.00 2.01
1509 1630 6.861572 GCTAAATTAACACAAACAGAGGAACC 59.138 38.462 0.00 0.00 0.00 3.62
1532 1653 4.098914 TGGTTAGTGAAATGACAAGGCT 57.901 40.909 0.00 0.00 0.00 4.58
1558 1679 7.718753 AGCTAGCATGCAATTTCTTCTAGTTAT 59.281 33.333 21.98 0.00 34.99 1.89
1562 1683 5.296283 ACAGCTAGCATGCAATTTCTTCTAG 59.704 40.000 21.98 10.23 34.99 2.43
1563 1684 5.188434 ACAGCTAGCATGCAATTTCTTCTA 58.812 37.500 21.98 0.00 34.99 2.10
1564 1685 4.015084 ACAGCTAGCATGCAATTTCTTCT 58.985 39.130 21.98 0.00 34.99 2.85
1565 1686 4.367386 ACAGCTAGCATGCAATTTCTTC 57.633 40.909 21.98 0.00 34.99 2.87
1568 1702 3.129988 AGGAACAGCTAGCATGCAATTTC 59.870 43.478 21.98 12.27 34.99 2.17
1779 1924 1.064654 GATGAAAGAATGGGACGCTGC 59.935 52.381 0.00 0.00 0.00 5.25
1918 2063 1.996191 GTTCAGTTCGTCATGAGAGGC 59.004 52.381 0.00 0.00 0.00 4.70
1919 2064 3.584406 AGTTCAGTTCGTCATGAGAGG 57.416 47.619 0.00 0.00 0.00 3.69
1920 2065 3.605916 CGAAGTTCAGTTCGTCATGAGAG 59.394 47.826 8.37 0.00 43.51 3.20
1921 2066 3.565516 CGAAGTTCAGTTCGTCATGAGA 58.434 45.455 8.37 0.00 43.51 3.27
1922 2067 3.961474 CGAAGTTCAGTTCGTCATGAG 57.039 47.619 8.37 0.00 43.51 2.90
1971 2117 1.468520 CACCGCGGAATCAAAGAACAT 59.531 47.619 35.90 0.00 0.00 2.71
1987 2134 6.238103 GGAAATATGTTATCAGTCACACACCG 60.238 42.308 0.00 0.00 0.00 4.94
2022 2169 1.410153 GGGTATGAAATGCAAGCCTGG 59.590 52.381 0.00 0.00 0.00 4.45
2043 2190 6.295462 CCCAAACAGAACCAGAATCATTGAAT 60.295 38.462 0.00 0.00 0.00 2.57
2049 2196 2.238521 GCCCAAACAGAACCAGAATCA 58.761 47.619 0.00 0.00 0.00 2.57
2140 2292 7.227910 TCCCTCAGCGGTGAATTAAAATATAAC 59.772 37.037 19.16 0.00 30.14 1.89
2175 2327 5.757886 TGCGCTGATTAAAATGTTATAGGC 58.242 37.500 9.73 0.00 0.00 3.93
2203 2358 4.569966 CCACTCAGCATGTCTTCAGATTAC 59.430 45.833 0.00 0.00 37.40 1.89
2217 2372 3.114606 TGATAAGGGATTCCACTCAGCA 58.885 45.455 4.80 0.00 34.83 4.41
2231 2386 5.500234 TGGACTGTTGAAAGGATGATAAGG 58.500 41.667 0.00 0.00 0.00 2.69
2240 2395 2.886523 TGCAAGATGGACTGTTGAAAGG 59.113 45.455 0.00 0.00 29.69 3.11
2273 2428 8.575649 ACTAACCCATTTTAACCTTCTACATG 57.424 34.615 0.00 0.00 0.00 3.21
2321 2479 3.751175 CAGGCCGTCTCACTTGAAAAATA 59.249 43.478 0.00 0.00 0.00 1.40
2327 2485 1.407656 AACCAGGCCGTCTCACTTGA 61.408 55.000 0.00 0.00 0.00 3.02
2328 2486 0.535102 AAACCAGGCCGTCTCACTTG 60.535 55.000 0.00 0.00 0.00 3.16
2330 2488 1.053424 TTAAACCAGGCCGTCTCACT 58.947 50.000 0.00 0.00 0.00 3.41
2331 2489 2.007608 GATTAAACCAGGCCGTCTCAC 58.992 52.381 0.00 0.00 0.00 3.51
2332 2490 1.906574 AGATTAAACCAGGCCGTCTCA 59.093 47.619 0.00 0.00 0.00 3.27
2397 2557 1.432023 GGGAGAGGTTGGTCCCCAAA 61.432 60.000 0.00 0.00 45.73 3.28
2398 2558 1.850755 GGGAGAGGTTGGTCCCCAA 60.851 63.158 0.00 0.00 46.23 4.12
2408 2568 1.689582 GAATCACCGGGGGAGAGGT 60.690 63.158 2.42 0.00 42.34 3.85
2429 2589 5.008613 TGCTTGAGTTAAGACGATTTTTGCT 59.991 36.000 0.00 0.00 38.76 3.91
2439 2599 4.702131 ACCCATTCATGCTTGAGTTAAGAC 59.298 41.667 2.23 0.00 38.76 3.01
2447 2607 4.586421 TGTTTAACACCCATTCATGCTTGA 59.414 37.500 0.00 0.00 0.00 3.02
2451 2611 6.207691 ACTATGTTTAACACCCATTCATGC 57.792 37.500 0.00 0.00 0.00 4.06
2469 2629 7.345192 GTGATTTTTAGTATGCGTGGACTATG 58.655 38.462 0.00 0.00 0.00 2.23
2470 2630 6.482308 GGTGATTTTTAGTATGCGTGGACTAT 59.518 38.462 0.00 0.00 0.00 2.12
2471 2631 5.813672 GGTGATTTTTAGTATGCGTGGACTA 59.186 40.000 0.00 0.00 0.00 2.59
2472 2632 4.634443 GGTGATTTTTAGTATGCGTGGACT 59.366 41.667 0.00 0.00 0.00 3.85
2473 2633 4.393680 TGGTGATTTTTAGTATGCGTGGAC 59.606 41.667 0.00 0.00 0.00 4.02
2474 2634 4.580868 TGGTGATTTTTAGTATGCGTGGA 58.419 39.130 0.00 0.00 0.00 4.02
2475 2635 4.394920 ACTGGTGATTTTTAGTATGCGTGG 59.605 41.667 0.00 0.00 0.00 4.94
2476 2636 5.545658 ACTGGTGATTTTTAGTATGCGTG 57.454 39.130 0.00 0.00 0.00 5.34
2477 2637 8.202137 AGTATACTGGTGATTTTTAGTATGCGT 58.798 33.333 4.10 0.00 40.97 5.24
2478 2638 8.487970 CAGTATACTGGTGATTTTTAGTATGCG 58.512 37.037 22.95 0.00 40.97 4.73
2506 2666 7.962441 ACAAATAAAACCTGCCATTAGAGTTT 58.038 30.769 0.00 0.00 32.26 2.66
2633 2793 2.028130 ACCAGCACATTTTTCGAACCA 58.972 42.857 0.00 0.00 0.00 3.67
2638 2798 0.673437 ACCCACCAGCACATTTTTCG 59.327 50.000 0.00 0.00 0.00 3.46
2694 2871 3.191581 ACGATATTCTCATCACGGCCTAG 59.808 47.826 0.00 0.00 0.00 3.02
2737 2914 5.534207 TTGAAATCTGGTTCATGCAAACT 57.466 34.783 0.00 0.00 37.36 2.66
2759 2936 4.137543 GGGTATGCGGATGAGAAAGAAAT 58.862 43.478 0.00 0.00 0.00 2.17
2774 2952 6.829811 TGGGTTTATAAAACTAGTGGGTATGC 59.170 38.462 12.85 0.00 0.00 3.14
2794 2972 2.430367 GCAACGGAGGACTGGGTT 59.570 61.111 0.00 0.00 0.00 4.11
2840 3018 5.344933 CACAAATCAGAAGCACATGACATTG 59.655 40.000 0.00 0.00 34.34 2.82
2891 3069 5.279708 GGCCTCTACATAACTAGATGCACAT 60.280 44.000 0.00 0.00 36.57 3.21
2921 3099 2.027192 ACCTACAAGCTGGTACCACATG 60.027 50.000 11.60 13.35 34.36 3.21
3002 3181 2.785713 TTACGAAAGCAAGGTTTGGC 57.214 45.000 1.53 0.00 0.00 4.52
3041 3220 2.823747 TGCAGGTACACTACACTACTGG 59.176 50.000 0.00 0.00 0.00 4.00
3042 3221 4.022242 AGTTGCAGGTACACTACACTACTG 60.022 45.833 0.00 0.00 0.00 2.74
3043 3222 4.150359 AGTTGCAGGTACACTACACTACT 58.850 43.478 0.00 0.00 0.00 2.57
3044 3223 4.483311 GAGTTGCAGGTACACTACACTAC 58.517 47.826 0.00 0.00 0.00 2.73
3046 3225 2.299297 GGAGTTGCAGGTACACTACACT 59.701 50.000 0.00 0.00 0.00 3.55
3047 3226 2.612221 GGGAGTTGCAGGTACACTACAC 60.612 54.545 0.32 0.00 0.00 2.90
3048 3227 1.621814 GGGAGTTGCAGGTACACTACA 59.378 52.381 0.32 0.00 0.00 2.74
3094 3276 9.970553 TTCACTTTCTCTAACTATACCTAGTGA 57.029 33.333 0.00 0.00 38.23 3.41
3130 3312 0.389391 CACTATACAGGGGCAGGACG 59.611 60.000 0.00 0.00 0.00 4.79
3138 3320 3.234353 TCTGGCTGATCACTATACAGGG 58.766 50.000 0.00 0.00 33.00 4.45
3233 3416 5.301045 TCTTCCGTACCATATGACAAGGTAG 59.699 44.000 3.65 6.55 38.49 3.18
3246 3429 3.602483 GTTAAAGGCATCTTCCGTACCA 58.398 45.455 0.00 0.00 31.82 3.25
3272 3455 6.010850 TGCTGATATAGTACCAACCTAGGAG 58.989 44.000 17.98 7.43 0.00 3.69
3313 3496 8.233037 ATGATTTACATATGGCCTTGCCGATTA 61.233 37.037 3.32 0.00 44.13 1.75
3348 3531 4.410228 ACATAGGAATGCCTCATGTAGTGT 59.590 41.667 0.00 0.00 45.54 3.55
3375 3558 9.835389 AGTCAAGATCCATGAAAAATTGAAAAA 57.165 25.926 0.00 0.00 0.00 1.94
3442 3626 2.688666 TCGCAGATGCCCCTCCTT 60.689 61.111 0.00 0.00 37.91 3.36
3458 3642 0.169009 GCAATGGAACTCTTGCGGTC 59.831 55.000 0.00 0.00 0.00 4.79
3461 3645 0.169672 CAGGCAATGGAACTCTTGCG 59.830 55.000 1.65 0.00 0.00 4.85
3479 3663 1.136110 TCATCCGCTGCTAATTCGACA 59.864 47.619 0.00 0.00 0.00 4.35
3560 3744 5.501156 AGTTTATTCTGGGCCTCTAACTTG 58.499 41.667 4.53 0.00 0.00 3.16
3607 3791 3.982576 AAGTAAACAAAGGACAAGCGG 57.017 42.857 0.00 0.00 0.00 5.52
3629 3814 4.248058 CGGAGGAAGTAATTAACAACGGT 58.752 43.478 0.00 0.00 0.00 4.83
3632 3819 4.633126 GGGACGGAGGAAGTAATTAACAAC 59.367 45.833 0.00 0.00 0.00 3.32
3643 3830 6.628398 GCTCTTATATTATGGGACGGAGGAAG 60.628 46.154 0.00 0.00 0.00 3.46
3644 3831 5.187186 GCTCTTATATTATGGGACGGAGGAA 59.813 44.000 0.00 0.00 0.00 3.36
3645 3832 4.710375 GCTCTTATATTATGGGACGGAGGA 59.290 45.833 0.00 0.00 0.00 3.71
3646 3833 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
3647 3834 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
3648 3835 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
3649 3836 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
3650 3837 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
3651 3838 9.874215 GTTAAAAACGCTCTTATATTATGGGAC 57.126 33.333 0.00 0.00 0.00 4.46
3652 3839 9.616156 TGTTAAAAACGCTCTTATATTATGGGA 57.384 29.630 0.00 0.00 0.00 4.37
3662 3849 9.918630 ACTAGAGTAATGTTAAAAACGCTCTTA 57.081 29.630 0.00 0.00 33.88 2.10
3663 3850 8.709646 CACTAGAGTAATGTTAAAAACGCTCTT 58.290 33.333 0.00 0.00 33.88 2.85
3664 3851 7.871463 ACACTAGAGTAATGTTAAAAACGCTCT 59.129 33.333 0.00 0.00 35.10 4.09
3665 3852 8.015409 ACACTAGAGTAATGTTAAAAACGCTC 57.985 34.615 0.00 0.00 0.00 5.03
3666 3853 7.958053 ACACTAGAGTAATGTTAAAAACGCT 57.042 32.000 0.00 0.00 0.00 5.07
3692 3879 7.121315 AGAGGCAAGAAATATAAGAGCGTTTTT 59.879 33.333 0.00 0.00 0.00 1.94
3693 3880 6.599638 AGAGGCAAGAAATATAAGAGCGTTTT 59.400 34.615 0.00 0.00 0.00 2.43
3694 3881 6.116126 AGAGGCAAGAAATATAAGAGCGTTT 58.884 36.000 0.00 0.00 0.00 3.60
3695 3882 5.675538 AGAGGCAAGAAATATAAGAGCGTT 58.324 37.500 0.00 0.00 0.00 4.84
3696 3883 5.283457 AGAGGCAAGAAATATAAGAGCGT 57.717 39.130 0.00 0.00 0.00 5.07
3697 3884 4.384247 CGAGAGGCAAGAAATATAAGAGCG 59.616 45.833 0.00 0.00 0.00 5.03
3698 3885 4.151512 GCGAGAGGCAAGAAATATAAGAGC 59.848 45.833 0.00 0.00 42.87 4.09
3699 3886 5.837586 GCGAGAGGCAAGAAATATAAGAG 57.162 43.478 0.00 0.00 42.87 2.85
3738 3927 3.571590 CCACCTTCTCTCTAGGCACTAT 58.428 50.000 0.00 0.00 41.70 2.12
3739 3928 2.358300 CCCACCTTCTCTCTAGGCACTA 60.358 54.545 0.00 0.00 41.75 2.74
3740 3929 1.621072 CCCACCTTCTCTCTAGGCACT 60.621 57.143 0.00 0.00 46.37 4.40
3741 3930 0.827368 CCCACCTTCTCTCTAGGCAC 59.173 60.000 0.00 0.00 36.17 5.01
3742 3931 0.413832 ACCCACCTTCTCTCTAGGCA 59.586 55.000 0.00 0.00 36.17 4.75
3743 3932 0.827368 CACCCACCTTCTCTCTAGGC 59.173 60.000 0.00 0.00 36.17 3.93
3744 3933 0.827368 GCACCCACCTTCTCTCTAGG 59.173 60.000 0.00 0.00 38.79 3.02
3745 3934 1.480137 CTGCACCCACCTTCTCTCTAG 59.520 57.143 0.00 0.00 0.00 2.43
3746 3935 1.561643 CTGCACCCACCTTCTCTCTA 58.438 55.000 0.00 0.00 0.00 2.43
3747 3936 1.835927 GCTGCACCCACCTTCTCTCT 61.836 60.000 0.00 0.00 0.00 3.10
3748 3937 1.376553 GCTGCACCCACCTTCTCTC 60.377 63.158 0.00 0.00 0.00 3.20
3749 3938 2.753029 GCTGCACCCACCTTCTCT 59.247 61.111 0.00 0.00 0.00 3.10
3750 3939 2.360475 GGCTGCACCCACCTTCTC 60.360 66.667 0.50 0.00 0.00 2.87
3751 3940 3.177884 TGGCTGCACCCACCTTCT 61.178 61.111 0.50 0.00 37.83 2.85
3757 3946 0.250727 GAAACTAGTGGCTGCACCCA 60.251 55.000 0.50 0.00 37.83 4.51
3758 3947 0.960861 GGAAACTAGTGGCTGCACCC 60.961 60.000 0.50 0.00 37.83 4.61
3759 3948 0.960861 GGGAAACTAGTGGCTGCACC 60.961 60.000 0.50 0.00 39.84 5.01
3760 3949 0.250727 TGGGAAACTAGTGGCTGCAC 60.251 55.000 0.50 0.00 0.00 4.57
3761 3950 0.698238 ATGGGAAACTAGTGGCTGCA 59.302 50.000 0.50 0.00 0.00 4.41
3762 3951 2.092914 ACTATGGGAAACTAGTGGCTGC 60.093 50.000 0.00 0.00 0.00 5.25
3763 3952 3.535561 CACTATGGGAAACTAGTGGCTG 58.464 50.000 0.00 0.00 40.63 4.85
3764 3953 2.092914 GCACTATGGGAAACTAGTGGCT 60.093 50.000 0.00 0.00 43.22 4.75
3765 3954 2.289565 GCACTATGGGAAACTAGTGGC 58.710 52.381 0.00 0.00 43.22 5.01
3766 3955 2.505819 AGGCACTATGGGAAACTAGTGG 59.494 50.000 0.00 0.00 43.22 4.00
3767 3956 3.914426 AGGCACTATGGGAAACTAGTG 57.086 47.619 0.00 5.55 44.92 2.74
3850 4039 1.600916 AGGCCAACCAGAAACGAGC 60.601 57.895 5.01 0.00 39.06 5.03
4092 4281 3.423154 CCTTGGACGCCGAGTTGC 61.423 66.667 10.91 0.00 33.27 4.17
4212 4401 0.463474 GGAGAAGCTGAGATGGTGGC 60.463 60.000 0.00 0.00 0.00 5.01
4233 4422 2.915659 TCGACTGGCCGAAGTGGT 60.916 61.111 0.00 0.00 41.21 4.16
4249 4438 1.330521 TGTTACGTATACCGGTCGCTC 59.669 52.381 12.40 3.72 42.24 5.03
4268 4457 2.352805 GGCACAGAGGACCCCTTG 59.647 66.667 0.00 0.00 31.76 3.61
4297 4486 0.112995 AAGCCAAGGATGAGTTGCCA 59.887 50.000 0.00 0.00 0.00 4.92
4381 4570 3.005554 CAAGCAGAGAACTATGTGGGTG 58.994 50.000 0.00 0.00 0.00 4.61
4383 4572 3.616956 TCAAGCAGAGAACTATGTGGG 57.383 47.619 0.00 0.00 0.00 4.61
4386 4575 4.867047 CGAACATCAAGCAGAGAACTATGT 59.133 41.667 0.00 0.00 0.00 2.29
4397 4586 1.242665 TGCATGCCGAACATCAAGCA 61.243 50.000 16.68 0.00 36.64 3.91
4411 4600 3.005684 ACCAGTACACCAACATTTGCATG 59.994 43.478 0.00 0.00 36.34 4.06
4441 4630 8.531530 GTCATGTAAACACATCAAACTTTTGTC 58.468 33.333 1.75 0.00 39.18 3.18
4619 4808 4.222847 CTAAGGGAGGCGCGGACC 62.223 72.222 8.83 0.15 0.00 4.46
4651 4859 4.191015 GAAGGGCCGGGATCCACC 62.191 72.222 15.23 11.54 38.08 4.61
4707 4915 3.066291 TGCCATAGTGTACAAACCCAG 57.934 47.619 0.00 0.00 0.00 4.45
4744 8765 6.096705 TGAAGCACAAGTAAATATGGGAATGG 59.903 38.462 0.00 0.00 0.00 3.16
4838 8859 6.458630 AGTACCTTTTAATTGGTAGGGTGT 57.541 37.500 7.20 0.00 39.22 4.16
4896 8917 5.603813 TCCCGCCAGTAATATTAGTACCTTT 59.396 40.000 2.44 0.00 0.00 3.11
4897 8918 5.149976 TCCCGCCAGTAATATTAGTACCTT 58.850 41.667 2.44 0.00 0.00 3.50
4898 8919 4.744237 TCCCGCCAGTAATATTAGTACCT 58.256 43.478 2.44 0.00 0.00 3.08
4899 8920 4.081807 CCTCCCGCCAGTAATATTAGTACC 60.082 50.000 2.44 0.00 0.00 3.34
4900 8921 4.081807 CCCTCCCGCCAGTAATATTAGTAC 60.082 50.000 2.44 0.00 0.00 2.73
4901 8922 4.091549 CCCTCCCGCCAGTAATATTAGTA 58.908 47.826 2.44 0.00 0.00 1.82
4902 8923 2.904434 CCCTCCCGCCAGTAATATTAGT 59.096 50.000 0.00 0.00 0.00 2.24
4903 8924 2.354805 GCCCTCCCGCCAGTAATATTAG 60.355 54.545 0.00 0.00 0.00 1.73
4904 8925 1.626825 GCCCTCCCGCCAGTAATATTA 59.373 52.381 0.00 0.00 0.00 0.98
4905 8926 0.400594 GCCCTCCCGCCAGTAATATT 59.599 55.000 0.00 0.00 0.00 1.28
4906 8927 0.473886 AGCCCTCCCGCCAGTAATAT 60.474 55.000 0.00 0.00 0.00 1.28
4907 8928 0.693092 AAGCCCTCCCGCCAGTAATA 60.693 55.000 0.00 0.00 0.00 0.98
4908 8929 1.571773 AAAGCCCTCCCGCCAGTAAT 61.572 55.000 0.00 0.00 0.00 1.89
4909 8930 2.228480 AAAGCCCTCCCGCCAGTAA 61.228 57.895 0.00 0.00 0.00 2.24
4910 8931 2.609610 AAAGCCCTCCCGCCAGTA 60.610 61.111 0.00 0.00 0.00 2.74
4911 8932 4.351054 CAAAGCCCTCCCGCCAGT 62.351 66.667 0.00 0.00 0.00 4.00
4912 8933 3.868200 AACAAAGCCCTCCCGCCAG 62.868 63.158 0.00 0.00 0.00 4.85
4913 8934 2.937959 AAAACAAAGCCCTCCCGCCA 62.938 55.000 0.00 0.00 0.00 5.69
4914 8935 0.896479 TAAAACAAAGCCCTCCCGCC 60.896 55.000 0.00 0.00 0.00 6.13
4915 8936 0.963225 TTAAAACAAAGCCCTCCCGC 59.037 50.000 0.00 0.00 0.00 6.13
4916 8937 3.953712 ATTTAAAACAAAGCCCTCCCG 57.046 42.857 0.00 0.00 0.00 5.14
4917 8938 6.170506 CCTTTATTTAAAACAAAGCCCTCCC 58.829 40.000 15.31 0.00 0.00 4.30
4918 8939 6.014070 TCCCTTTATTTAAAACAAAGCCCTCC 60.014 38.462 15.31 0.00 0.00 4.30
4919 8940 6.999950 TCCCTTTATTTAAAACAAAGCCCTC 58.000 36.000 15.31 0.00 0.00 4.30
4920 8941 7.381789 TTCCCTTTATTTAAAACAAAGCCCT 57.618 32.000 15.31 0.00 0.00 5.19
4921 8942 7.880713 TCATTCCCTTTATTTAAAACAAAGCCC 59.119 33.333 15.31 0.00 0.00 5.19
4922 8943 8.717821 GTCATTCCCTTTATTTAAAACAAAGCC 58.282 33.333 15.31 0.93 0.00 4.35
4923 8944 9.267084 TGTCATTCCCTTTATTTAAAACAAAGC 57.733 29.630 15.31 5.73 0.00 3.51
4927 8948 9.771534 CCTTTGTCATTCCCTTTATTTAAAACA 57.228 29.630 0.00 0.00 0.00 2.83
4928 8949 9.214957 CCCTTTGTCATTCCCTTTATTTAAAAC 57.785 33.333 0.00 0.00 0.00 2.43
4929 8950 8.379331 CCCCTTTGTCATTCCCTTTATTTAAAA 58.621 33.333 0.00 0.00 0.00 1.52
4930 8951 7.037945 CCCCCTTTGTCATTCCCTTTATTTAAA 60.038 37.037 0.00 0.00 0.00 1.52
4931 8952 6.442244 CCCCCTTTGTCATTCCCTTTATTTAA 59.558 38.462 0.00 0.00 0.00 1.52
4932 8953 5.961421 CCCCCTTTGTCATTCCCTTTATTTA 59.039 40.000 0.00 0.00 0.00 1.40
4933 8954 4.782691 CCCCCTTTGTCATTCCCTTTATTT 59.217 41.667 0.00 0.00 0.00 1.40
4934 8955 4.361783 CCCCCTTTGTCATTCCCTTTATT 58.638 43.478 0.00 0.00 0.00 1.40
4935 8956 3.885738 GCCCCCTTTGTCATTCCCTTTAT 60.886 47.826 0.00 0.00 0.00 1.40
4936 8957 2.558800 GCCCCCTTTGTCATTCCCTTTA 60.559 50.000 0.00 0.00 0.00 1.85
4937 8958 1.831290 GCCCCCTTTGTCATTCCCTTT 60.831 52.381 0.00 0.00 0.00 3.11
4938 8959 0.252239 GCCCCCTTTGTCATTCCCTT 60.252 55.000 0.00 0.00 0.00 3.95
4939 8960 1.388133 GCCCCCTTTGTCATTCCCT 59.612 57.895 0.00 0.00 0.00 4.20
4940 8961 1.078347 TGCCCCCTTTGTCATTCCC 59.922 57.895 0.00 0.00 0.00 3.97
4941 8962 0.541764 TGTGCCCCCTTTGTCATTCC 60.542 55.000 0.00 0.00 0.00 3.01
4942 8963 1.560505 ATGTGCCCCCTTTGTCATTC 58.439 50.000 0.00 0.00 0.00 2.67
4943 8964 2.831526 GTTATGTGCCCCCTTTGTCATT 59.168 45.455 0.00 0.00 0.00 2.57
4944 8965 2.456577 GTTATGTGCCCCCTTTGTCAT 58.543 47.619 0.00 0.00 0.00 3.06
4945 8966 1.549037 GGTTATGTGCCCCCTTTGTCA 60.549 52.381 0.00 0.00 0.00 3.58
4946 8967 1.182667 GGTTATGTGCCCCCTTTGTC 58.817 55.000 0.00 0.00 0.00 3.18
4947 8968 0.610785 CGGTTATGTGCCCCCTTTGT 60.611 55.000 0.00 0.00 0.00 2.83
4948 8969 0.610785 ACGGTTATGTGCCCCCTTTG 60.611 55.000 0.00 0.00 0.00 2.77
4949 8970 0.610785 CACGGTTATGTGCCCCCTTT 60.611 55.000 0.00 0.00 32.31 3.11
4950 8971 1.001393 CACGGTTATGTGCCCCCTT 60.001 57.895 0.00 0.00 32.31 3.95
4951 8972 0.910566 TACACGGTTATGTGCCCCCT 60.911 55.000 0.00 0.00 43.74 4.79
4952 8973 0.035247 TTACACGGTTATGTGCCCCC 60.035 55.000 0.00 0.00 43.74 5.40
4953 8974 1.944709 GATTACACGGTTATGTGCCCC 59.055 52.381 0.00 0.00 43.74 5.80
4954 8975 2.353579 GTGATTACACGGTTATGTGCCC 59.646 50.000 0.00 0.00 43.74 5.36
4955 8976 3.668596 GTGATTACACGGTTATGTGCC 57.331 47.619 0.00 0.00 43.74 5.01
4957 8978 7.491372 ATCAGTTAGTGATTACACGGTTATGTG 59.509 37.037 0.00 0.00 44.05 3.21
4958 8979 7.553334 ATCAGTTAGTGATTACACGGTTATGT 58.447 34.615 0.00 0.00 44.05 2.29
4959 8980 7.921214 AGATCAGTTAGTGATTACACGGTTATG 59.079 37.037 3.87 0.00 46.64 1.90
4960 8981 8.008513 AGATCAGTTAGTGATTACACGGTTAT 57.991 34.615 3.87 0.00 46.64 1.89
4961 8982 7.400599 AGATCAGTTAGTGATTACACGGTTA 57.599 36.000 3.87 0.00 46.64 2.85
4962 8983 6.282199 AGATCAGTTAGTGATTACACGGTT 57.718 37.500 3.87 0.00 46.64 4.44
4963 8984 5.916661 AGATCAGTTAGTGATTACACGGT 57.083 39.130 3.87 0.00 46.64 4.83
4964 8985 5.907945 CGTAGATCAGTTAGTGATTACACGG 59.092 44.000 16.83 6.02 46.64 4.94
4965 8986 6.484540 ACGTAGATCAGTTAGTGATTACACG 58.515 40.000 20.15 20.15 46.64 4.49
4966 8987 8.610896 ACTACGTAGATCAGTTAGTGATTACAC 58.389 37.037 28.74 2.64 46.64 2.90
4967 8988 8.728337 ACTACGTAGATCAGTTAGTGATTACA 57.272 34.615 28.74 0.00 46.64 2.41
4969 8990 9.999009 CAAACTACGTAGATCAGTTAGTGATTA 57.001 33.333 28.74 0.00 46.64 1.75
4970 8991 8.737175 TCAAACTACGTAGATCAGTTAGTGATT 58.263 33.333 28.74 5.08 46.64 2.57
4972 8993 7.677454 TCAAACTACGTAGATCAGTTAGTGA 57.323 36.000 28.74 12.83 40.38 3.41
4973 8994 8.399425 AGATCAAACTACGTAGATCAGTTAGTG 58.601 37.037 28.74 10.83 39.39 2.74
4974 8995 8.508883 AGATCAAACTACGTAGATCAGTTAGT 57.491 34.615 28.74 2.49 39.39 2.24
4975 8996 9.790389 AAAGATCAAACTACGTAGATCAGTTAG 57.210 33.333 28.74 1.78 39.39 2.34
4980 9001 9.031360 GCATAAAAGATCAAACTACGTAGATCA 57.969 33.333 28.74 8.14 39.39 2.92
4981 9002 9.250624 AGCATAAAAGATCAAACTACGTAGATC 57.749 33.333 28.74 19.44 37.69 2.75
4982 9003 9.035607 CAGCATAAAAGATCAAACTACGTAGAT 57.964 33.333 28.74 14.92 0.00 1.98
4983 9004 7.491372 CCAGCATAAAAGATCAAACTACGTAGA 59.509 37.037 28.74 7.17 0.00 2.59
4984 9005 7.491372 TCCAGCATAAAAGATCAAACTACGTAG 59.509 37.037 20.97 20.97 0.00 3.51
4985 9006 7.324935 TCCAGCATAAAAGATCAAACTACGTA 58.675 34.615 0.00 0.00 0.00 3.57
4986 9007 6.170506 TCCAGCATAAAAGATCAAACTACGT 58.829 36.000 0.00 0.00 0.00 3.57
4987 9008 6.535150 TCTCCAGCATAAAAGATCAAACTACG 59.465 38.462 0.00 0.00 0.00 3.51
4988 9009 7.849804 TCTCCAGCATAAAAGATCAAACTAC 57.150 36.000 0.00 0.00 0.00 2.73
4990 9011 9.466497 TTTATCTCCAGCATAAAAGATCAAACT 57.534 29.630 0.00 0.00 31.25 2.66
4991 9012 9.727627 CTTTATCTCCAGCATAAAAGATCAAAC 57.272 33.333 0.00 0.00 31.25 2.93
4992 9013 8.906867 CCTTTATCTCCAGCATAAAAGATCAAA 58.093 33.333 0.00 0.00 31.25 2.69
4993 9014 7.503566 CCCTTTATCTCCAGCATAAAAGATCAA 59.496 37.037 0.00 0.00 31.25 2.57
4994 9015 7.000472 CCCTTTATCTCCAGCATAAAAGATCA 59.000 38.462 0.00 0.00 31.25 2.92
4995 9016 6.432472 CCCCTTTATCTCCAGCATAAAAGATC 59.568 42.308 0.00 0.00 31.25 2.75
4996 9017 6.310149 CCCCTTTATCTCCAGCATAAAAGAT 58.690 40.000 0.00 0.00 33.27 2.40
4997 9018 5.399038 CCCCCTTTATCTCCAGCATAAAAGA 60.399 44.000 0.00 0.00 0.00 2.52
4998 9019 4.829492 CCCCCTTTATCTCCAGCATAAAAG 59.171 45.833 0.00 0.00 0.00 2.27
4999 9020 4.803452 CCCCCTTTATCTCCAGCATAAAA 58.197 43.478 0.00 0.00 0.00 1.52
5000 9021 3.436470 GCCCCCTTTATCTCCAGCATAAA 60.436 47.826 0.00 0.00 0.00 1.40
5001 9022 2.108250 GCCCCCTTTATCTCCAGCATAA 59.892 50.000 0.00 0.00 0.00 1.90
5002 9023 1.705186 GCCCCCTTTATCTCCAGCATA 59.295 52.381 0.00 0.00 0.00 3.14
5003 9024 0.480252 GCCCCCTTTATCTCCAGCAT 59.520 55.000 0.00 0.00 0.00 3.79
5004 9025 0.918799 TGCCCCCTTTATCTCCAGCA 60.919 55.000 0.00 0.00 0.00 4.41
5005 9026 0.466372 GTGCCCCCTTTATCTCCAGC 60.466 60.000 0.00 0.00 0.00 4.85
5006 9027 0.918983 TGTGCCCCCTTTATCTCCAG 59.081 55.000 0.00 0.00 0.00 3.86
5007 9028 1.607225 ATGTGCCCCCTTTATCTCCA 58.393 50.000 0.00 0.00 0.00 3.86
5008 9029 2.553247 GCTATGTGCCCCCTTTATCTCC 60.553 54.545 0.00 0.00 35.15 3.71
5009 9030 2.106511 TGCTATGTGCCCCCTTTATCTC 59.893 50.000 0.00 0.00 42.00 2.75
5010 9031 2.135189 TGCTATGTGCCCCCTTTATCT 58.865 47.619 0.00 0.00 42.00 1.98
5011 9032 2.230660 GTGCTATGTGCCCCCTTTATC 58.769 52.381 0.00 0.00 42.00 1.75
5012 9033 1.476833 CGTGCTATGTGCCCCCTTTAT 60.477 52.381 0.00 0.00 42.00 1.40
5013 9034 0.107410 CGTGCTATGTGCCCCCTTTA 60.107 55.000 0.00 0.00 42.00 1.85
5014 9035 1.378514 CGTGCTATGTGCCCCCTTT 60.379 57.895 0.00 0.00 42.00 3.11
5015 9036 2.257409 CTCGTGCTATGTGCCCCCTT 62.257 60.000 0.00 0.00 42.00 3.95
5016 9037 2.687200 TCGTGCTATGTGCCCCCT 60.687 61.111 0.00 0.00 42.00 4.79
5017 9038 2.203070 CTCGTGCTATGTGCCCCC 60.203 66.667 0.00 0.00 42.00 5.40
5018 9039 0.392461 TTTCTCGTGCTATGTGCCCC 60.392 55.000 0.00 0.00 42.00 5.80
5019 9040 1.668419 ATTTCTCGTGCTATGTGCCC 58.332 50.000 0.00 0.00 42.00 5.36
5020 9041 2.223340 CCAATTTCTCGTGCTATGTGCC 60.223 50.000 0.00 0.00 42.00 5.01
5021 9042 2.677836 TCCAATTTCTCGTGCTATGTGC 59.322 45.455 0.00 0.00 43.25 4.57
5022 9043 3.242091 CGTCCAATTTCTCGTGCTATGTG 60.242 47.826 0.00 0.00 0.00 3.21
5023 9044 2.930040 CGTCCAATTTCTCGTGCTATGT 59.070 45.455 0.00 0.00 0.00 2.29
5024 9045 2.285220 CCGTCCAATTTCTCGTGCTATG 59.715 50.000 0.00 0.00 0.00 2.23
5025 9046 2.550978 CCGTCCAATTTCTCGTGCTAT 58.449 47.619 0.00 0.00 0.00 2.97
5026 9047 1.404986 CCCGTCCAATTTCTCGTGCTA 60.405 52.381 0.00 0.00 0.00 3.49
5027 9048 0.673644 CCCGTCCAATTTCTCGTGCT 60.674 55.000 0.00 0.00 0.00 4.40
5028 9049 0.672401 TCCCGTCCAATTTCTCGTGC 60.672 55.000 0.00 0.00 0.00 5.34
5029 9050 1.076332 GTCCCGTCCAATTTCTCGTG 58.924 55.000 0.00 0.00 0.00 4.35
5030 9051 0.682852 TGTCCCGTCCAATTTCTCGT 59.317 50.000 0.00 0.00 0.00 4.18
5031 9052 1.337823 ACTGTCCCGTCCAATTTCTCG 60.338 52.381 0.00 0.00 0.00 4.04
5032 9053 2.474410 ACTGTCCCGTCCAATTTCTC 57.526 50.000 0.00 0.00 0.00 2.87
5033 9054 2.951229 AACTGTCCCGTCCAATTTCT 57.049 45.000 0.00 0.00 0.00 2.52
5034 9055 3.316868 TCAAAACTGTCCCGTCCAATTTC 59.683 43.478 0.00 0.00 0.00 2.17
5035 9056 3.292460 TCAAAACTGTCCCGTCCAATTT 58.708 40.909 0.00 0.00 0.00 1.82
5036 9057 2.938838 TCAAAACTGTCCCGTCCAATT 58.061 42.857 0.00 0.00 0.00 2.32
5037 9058 2.649531 TCAAAACTGTCCCGTCCAAT 57.350 45.000 0.00 0.00 0.00 3.16
5038 9059 2.294074 CTTCAAAACTGTCCCGTCCAA 58.706 47.619 0.00 0.00 0.00 3.53
5039 9060 1.961793 CTTCAAAACTGTCCCGTCCA 58.038 50.000 0.00 0.00 0.00 4.02
5040 9061 0.591659 GCTTCAAAACTGTCCCGTCC 59.408 55.000 0.00 0.00 0.00 4.79
5041 9062 0.234884 CGCTTCAAAACTGTCCCGTC 59.765 55.000 0.00 0.00 0.00 4.79
5042 9063 0.179067 TCGCTTCAAAACTGTCCCGT 60.179 50.000 0.00 0.00 0.00 5.28
5043 9064 0.512952 CTCGCTTCAAAACTGTCCCG 59.487 55.000 0.00 0.00 0.00 5.14
5044 9065 1.878953 TCTCGCTTCAAAACTGTCCC 58.121 50.000 0.00 0.00 0.00 4.46
5045 9066 4.870426 TGATATCTCGCTTCAAAACTGTCC 59.130 41.667 3.98 0.00 0.00 4.02
5046 9067 5.006165 CCTGATATCTCGCTTCAAAACTGTC 59.994 44.000 3.98 0.00 0.00 3.51
5047 9068 4.872691 CCTGATATCTCGCTTCAAAACTGT 59.127 41.667 3.98 0.00 0.00 3.55
5048 9069 4.872691 ACCTGATATCTCGCTTCAAAACTG 59.127 41.667 3.98 0.00 0.00 3.16
5049 9070 5.091261 ACCTGATATCTCGCTTCAAAACT 57.909 39.130 3.98 0.00 0.00 2.66
5050 9071 5.803020 AACCTGATATCTCGCTTCAAAAC 57.197 39.130 3.98 0.00 0.00 2.43
5051 9072 5.705441 ACAAACCTGATATCTCGCTTCAAAA 59.295 36.000 3.98 0.00 0.00 2.44
5052 9073 5.245531 ACAAACCTGATATCTCGCTTCAAA 58.754 37.500 3.98 0.00 0.00 2.69
5053 9074 4.832248 ACAAACCTGATATCTCGCTTCAA 58.168 39.130 3.98 0.00 0.00 2.69
5054 9075 4.471904 ACAAACCTGATATCTCGCTTCA 57.528 40.909 3.98 0.00 0.00 3.02
5055 9076 5.635700 GGATACAAACCTGATATCTCGCTTC 59.364 44.000 3.98 0.00 0.00 3.86
5056 9077 5.305644 AGGATACAAACCTGATATCTCGCTT 59.694 40.000 3.98 0.00 36.30 4.68
5057 9078 4.835615 AGGATACAAACCTGATATCTCGCT 59.164 41.667 3.98 0.00 36.30 4.93
5058 9079 5.140747 AGGATACAAACCTGATATCTCGC 57.859 43.478 3.98 0.00 36.30 5.03
5068 9089 3.130734 TCCTAGGCAGGATACAAACCT 57.869 47.619 2.96 0.00 46.58 3.50
5082 9103 1.797211 CGCCGTCTAGCCTTCCTAGG 61.797 65.000 0.82 0.82 43.14 3.02
5083 9104 1.655329 CGCCGTCTAGCCTTCCTAG 59.345 63.158 0.00 0.00 44.09 3.02
5084 9105 1.826921 CCGCCGTCTAGCCTTCCTA 60.827 63.158 0.00 0.00 0.00 2.94
5085 9106 3.148279 CCGCCGTCTAGCCTTCCT 61.148 66.667 0.00 0.00 0.00 3.36
5086 9107 4.893601 GCCGCCGTCTAGCCTTCC 62.894 72.222 0.00 0.00 0.00 3.46
5098 9119 4.760047 TTTCAGAGAGCCGCCGCC 62.760 66.667 0.00 0.00 34.57 6.13
5109 9130 7.094377 CCGGGAGAACTTTATTCAATTTTCAGA 60.094 37.037 0.00 0.00 0.00 3.27
5118 9139 3.431766 GCTAGCCGGGAGAACTTTATTCA 60.432 47.826 2.29 0.00 0.00 2.57
5142 9163 1.086696 AAATGCAACATCGAGACGGG 58.913 50.000 0.00 0.00 0.00 5.28
5143 9164 2.285834 GCTAAATGCAACATCGAGACGG 60.286 50.000 0.00 0.00 42.31 4.79
5170 9191 1.217882 CAACCTCCACACGTTCACTC 58.782 55.000 0.00 0.00 0.00 3.51
5193 9214 2.617308 CCGCTAAAGACAGATCTACCGA 59.383 50.000 0.00 0.00 33.57 4.69
5197 9218 5.050490 GCAAATCCGCTAAAGACAGATCTA 58.950 41.667 0.00 0.00 33.57 1.98
5203 9224 1.999735 CGAGCAAATCCGCTAAAGACA 59.000 47.619 0.00 0.00 44.01 3.41
5212 9233 1.064060 GACCAAATCCGAGCAAATCCG 59.936 52.381 0.00 0.00 0.00 4.18
5214 9235 1.737793 ACGACCAAATCCGAGCAAATC 59.262 47.619 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.