Multiple sequence alignment - TraesCS6D01G315100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G315100 chr6D 100.000 3074 0 0 1 3074 423654461 423657534 0.000000e+00 5677.0
1 TraesCS6D01G315100 chr6D 90.909 99 7 2 156 254 342827493 342827397 6.920000e-27 132.0
2 TraesCS6D01G315100 chr6D 92.391 92 5 2 165 254 429084340 429084249 2.490000e-26 130.0
3 TraesCS6D01G315100 chr6B 94.189 2392 116 9 537 2908 638956002 638953614 0.000000e+00 3626.0
4 TraesCS6D01G315100 chr6B 90.476 168 10 6 8 171 639147201 639147036 1.860000e-52 217.0
5 TraesCS6D01G315100 chr6B 87.709 179 8 7 1 171 638956455 638956283 2.420000e-46 196.0
6 TraesCS6D01G315100 chr6B 93.333 90 5 1 166 254 508172190 508172279 6.920000e-27 132.0
7 TraesCS6D01G315100 chr6B 89.024 82 7 2 257 336 511426934 511427015 1.950000e-17 100.0
8 TraesCS6D01G315100 chr6B 92.537 67 5 0 425 491 639146929 639146863 2.520000e-16 97.1
9 TraesCS6D01G315100 chr6A 93.069 1212 62 10 937 2139 568047735 568046537 0.000000e+00 1753.0
10 TraesCS6D01G315100 chr6A 93.216 398 19 4 498 893 568048137 568047746 2.060000e-161 579.0
11 TraesCS6D01G315100 chr6A 93.651 126 5 2 2348 2473 568045020 568044898 5.230000e-43 185.0
12 TraesCS6D01G315100 chr6A 89.916 119 7 4 1 117 568140256 568140371 6.870000e-32 148.0
13 TraesCS6D01G315100 chr6A 91.089 101 9 0 69 169 568272019 568271919 1.490000e-28 137.0
14 TraesCS6D01G315100 chr6A 90.099 101 10 0 69 169 553467912 553467812 6.920000e-27 132.0
15 TraesCS6D01G315100 chr6A 88.889 99 11 0 71 169 553453922 553453824 4.160000e-24 122.0
16 TraesCS6D01G315100 chr6A 81.481 162 16 6 8 169 553546883 553546736 1.500000e-23 121.0
17 TraesCS6D01G315100 chr6A 87.736 106 9 4 154 256 571651730 571651626 1.500000e-23 121.0
18 TraesCS6D01G315100 chr1B 77.760 634 85 33 1378 1981 42309626 42309019 3.800000e-89 339.0
19 TraesCS6D01G315100 chr1B 80.120 166 19 10 323 476 113872985 113873148 9.010000e-21 111.0
20 TraesCS6D01G315100 chr1B 88.525 61 7 0 1921 1981 514308020 514308080 1.180000e-09 75.0
21 TraesCS6D01G315100 chr7B 89.143 175 13 5 1 170 593129213 593129386 2.400000e-51 213.0
22 TraesCS6D01G315100 chr7B 79.518 166 20 10 323 476 733719412 733719575 4.190000e-19 106.0
23 TraesCS6D01G315100 chr5D 93.333 90 5 1 166 254 423186883 423186794 6.920000e-27 132.0
24 TraesCS6D01G315100 chr5D 95.312 64 3 0 261 324 491769161 491769098 5.420000e-18 102.0
25 TraesCS6D01G315100 chr3D 94.253 87 3 2 169 254 39924041 39924126 6.920000e-27 132.0
26 TraesCS6D01G315100 chrUn 94.186 86 4 1 169 254 383416027 383415943 2.490000e-26 130.0
27 TraesCS6D01G315100 chr5B 92.391 92 5 2 164 254 8364314 8364224 2.490000e-26 130.0
28 TraesCS6D01G315100 chr4A 90.000 100 6 4 156 254 559496910 559496814 3.220000e-25 126.0
29 TraesCS6D01G315100 chr4D 97.015 67 2 0 257 323 20141566 20141632 2.510000e-21 113.0
30 TraesCS6D01G315100 chr4D 95.522 67 3 0 257 323 20077350 20077416 1.170000e-19 108.0
31 TraesCS6D01G315100 chr4D 94.444 36 2 0 2973 3008 497060286 497060321 4.280000e-04 56.5
32 TraesCS6D01G315100 chr2D 91.463 82 7 0 245 326 513363222 513363303 2.510000e-21 113.0
33 TraesCS6D01G315100 chr1D 94.286 70 3 1 257 325 287170617 287170548 4.190000e-19 106.0
34 TraesCS6D01G315100 chr2B 94.118 68 4 0 257 324 86681290 86681223 1.510000e-18 104.0
35 TraesCS6D01G315100 chr7D 93.846 65 4 0 257 321 133500429 133500365 7.010000e-17 99.0
36 TraesCS6D01G315100 chr7D 93.846 65 4 0 257 321 133604072 133604136 7.010000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G315100 chr6D 423654461 423657534 3073 False 5677 5677 100.000 1 3074 1 chr6D.!!$F1 3073
1 TraesCS6D01G315100 chr6B 638953614 638956455 2841 True 1911 3626 90.949 1 2908 2 chr6B.!!$R1 2907
2 TraesCS6D01G315100 chr6A 568044898 568048137 3239 True 839 1753 93.312 498 2473 3 chr6A.!!$R6 1975
3 TraesCS6D01G315100 chr1B 42309019 42309626 607 True 339 339 77.760 1378 1981 1 chr1B.!!$R1 603

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 230 0.036483 ACATGCGCATACACTCACCA 60.036 50.0 24.84 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2207 2343 1.051812 ATTCGGGCCATAGAGGAGTG 58.948 55.0 4.39 0.0 41.22 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.854062 TTTCGTCGCAAACAGTACCG 59.146 50.000 0.00 0.00 0.00 4.02
36 37 1.271102 GTACCGAAAAAGGGCATGCAA 59.729 47.619 21.36 0.00 35.02 4.08
76 79 2.552315 GGTAGTTTTGCTAGCAGTGCAA 59.448 45.455 18.45 6.49 46.90 4.08
89 92 3.575687 AGCAGTGCAATTCTTTTAGCCTT 59.424 39.130 19.20 0.00 0.00 4.35
94 97 3.440173 TGCAATTCTTTTAGCCTTCGGAG 59.560 43.478 0.00 0.00 0.00 4.63
95 98 3.181496 GCAATTCTTTTAGCCTTCGGAGG 60.181 47.826 4.95 4.95 46.50 4.30
96 99 4.261801 CAATTCTTTTAGCCTTCGGAGGA 58.738 43.478 16.16 0.00 46.74 3.71
97 100 3.611766 TTCTTTTAGCCTTCGGAGGAG 57.388 47.619 16.16 0.59 46.74 3.69
98 101 1.831736 TCTTTTAGCCTTCGGAGGAGG 59.168 52.381 16.16 2.08 46.74 4.30
99 102 1.555533 CTTTTAGCCTTCGGAGGAGGT 59.444 52.381 16.16 0.00 46.74 3.85
100 103 1.652947 TTTAGCCTTCGGAGGAGGTT 58.347 50.000 16.16 1.77 46.74 3.50
135 138 7.461182 TGGAAATAACATCGACCAGAAAAAT 57.539 32.000 0.00 0.00 0.00 1.82
193 199 8.780846 TTTTTCTTTAACACAGTACAGACTCA 57.219 30.769 0.00 0.00 31.73 3.41
194 200 7.766219 TTTCTTTAACACAGTACAGACTCAC 57.234 36.000 0.00 0.00 31.73 3.51
195 201 5.516996 TCTTTAACACAGTACAGACTCACG 58.483 41.667 0.00 0.00 31.73 4.35
196 202 2.135664 AACACAGTACAGACTCACGC 57.864 50.000 0.00 0.00 31.73 5.34
197 203 0.040336 ACACAGTACAGACTCACGCG 60.040 55.000 3.53 3.53 31.73 6.01
198 204 1.081376 ACAGTACAGACTCACGCGC 60.081 57.895 5.73 0.00 31.73 6.86
199 205 1.210413 CAGTACAGACTCACGCGCT 59.790 57.895 5.73 0.00 31.73 5.92
200 206 0.794981 CAGTACAGACTCACGCGCTC 60.795 60.000 5.73 0.00 31.73 5.03
201 207 1.209383 GTACAGACTCACGCGCTCA 59.791 57.895 5.73 0.00 0.00 4.26
202 208 0.179161 GTACAGACTCACGCGCTCAT 60.179 55.000 5.73 0.00 0.00 2.90
203 209 1.063616 GTACAGACTCACGCGCTCATA 59.936 52.381 5.73 0.00 0.00 2.15
204 210 0.741326 ACAGACTCACGCGCTCATAT 59.259 50.000 5.73 0.00 0.00 1.78
205 211 1.947456 ACAGACTCACGCGCTCATATA 59.053 47.619 5.73 0.00 0.00 0.86
206 212 2.287069 ACAGACTCACGCGCTCATATAC 60.287 50.000 5.73 0.00 0.00 1.47
207 213 1.947456 AGACTCACGCGCTCATATACA 59.053 47.619 5.73 0.00 0.00 2.29
208 214 2.554462 AGACTCACGCGCTCATATACAT 59.446 45.455 5.73 0.00 0.00 2.29
209 215 2.658802 GACTCACGCGCTCATATACATG 59.341 50.000 5.73 0.00 0.00 3.21
210 216 1.388093 CTCACGCGCTCATATACATGC 59.612 52.381 5.73 0.00 31.73 4.06
216 222 3.559530 CGCTCATATACATGCGCATAC 57.440 47.619 24.84 3.31 41.94 2.39
217 223 2.923020 CGCTCATATACATGCGCATACA 59.077 45.455 24.84 14.18 41.94 2.29
218 224 3.241773 CGCTCATATACATGCGCATACAC 60.242 47.826 24.84 4.36 41.94 2.90
219 225 3.928992 GCTCATATACATGCGCATACACT 59.071 43.478 24.84 10.63 41.55 3.55
220 226 4.032217 GCTCATATACATGCGCATACACTC 59.968 45.833 24.84 2.68 41.55 3.51
221 227 5.132897 TCATATACATGCGCATACACTCA 57.867 39.130 24.84 6.80 31.73 3.41
222 228 4.923281 TCATATACATGCGCATACACTCAC 59.077 41.667 24.84 0.00 31.73 3.51
223 229 1.934589 TACATGCGCATACACTCACC 58.065 50.000 24.84 0.00 0.00 4.02
224 230 0.036483 ACATGCGCATACACTCACCA 60.036 50.000 24.84 0.00 0.00 4.17
225 231 0.374758 CATGCGCATACACTCACCAC 59.625 55.000 24.84 0.00 0.00 4.16
226 232 0.250234 ATGCGCATACACTCACCACT 59.750 50.000 24.02 0.00 0.00 4.00
227 233 0.892063 TGCGCATACACTCACCACTA 59.108 50.000 5.66 0.00 0.00 2.74
228 234 1.480545 TGCGCATACACTCACCACTAT 59.519 47.619 5.66 0.00 0.00 2.12
229 235 1.860950 GCGCATACACTCACCACTATG 59.139 52.381 0.30 0.00 0.00 2.23
230 236 2.481276 GCGCATACACTCACCACTATGA 60.481 50.000 0.30 0.00 0.00 2.15
231 237 3.780902 CGCATACACTCACCACTATGAA 58.219 45.455 0.00 0.00 0.00 2.57
232 238 3.551890 CGCATACACTCACCACTATGAAC 59.448 47.826 0.00 0.00 0.00 3.18
233 239 3.551890 GCATACACTCACCACTATGAACG 59.448 47.826 0.00 0.00 0.00 3.95
234 240 2.080286 ACACTCACCACTATGAACGC 57.920 50.000 0.00 0.00 0.00 4.84
235 241 1.343142 ACACTCACCACTATGAACGCA 59.657 47.619 0.00 0.00 0.00 5.24
236 242 1.726791 CACTCACCACTATGAACGCAC 59.273 52.381 0.00 0.00 0.00 5.34
237 243 1.343142 ACTCACCACTATGAACGCACA 59.657 47.619 0.00 0.00 0.00 4.57
238 244 1.726791 CTCACCACTATGAACGCACAC 59.273 52.381 0.00 0.00 0.00 3.82
239 245 1.069358 TCACCACTATGAACGCACACA 59.931 47.619 0.00 0.00 0.00 3.72
240 246 1.194547 CACCACTATGAACGCACACAC 59.805 52.381 0.00 0.00 0.00 3.82
241 247 0.438445 CCACTATGAACGCACACACG 59.562 55.000 0.00 0.00 39.50 4.49
242 248 0.179250 CACTATGAACGCACACACGC 60.179 55.000 0.00 0.00 36.19 5.34
243 249 0.598942 ACTATGAACGCACACACGCA 60.599 50.000 0.00 0.00 36.19 5.24
244 250 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
245 251 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
246 252 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
247 253 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
250 256 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
251 257 2.604174 GCACACACGCACACCCTAC 61.604 63.158 0.00 0.00 0.00 3.18
252 258 1.959226 CACACACGCACACCCTACC 60.959 63.158 0.00 0.00 0.00 3.18
253 259 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
254 260 2.525877 ACACGCACACCCTACCCT 60.526 61.111 0.00 0.00 0.00 4.34
255 261 2.144738 ACACGCACACCCTACCCTT 61.145 57.895 0.00 0.00 0.00 3.95
256 262 1.671054 CACGCACACCCTACCCTTG 60.671 63.158 0.00 0.00 0.00 3.61
257 263 2.046314 CGCACACCCTACCCTTGG 60.046 66.667 0.00 0.00 0.00 3.61
258 264 2.589157 CGCACACCCTACCCTTGGA 61.589 63.158 0.00 0.00 0.00 3.53
259 265 1.002502 GCACACCCTACCCTTGGAC 60.003 63.158 0.00 0.00 0.00 4.02
260 266 1.489560 GCACACCCTACCCTTGGACT 61.490 60.000 0.00 0.00 0.00 3.85
261 267 1.064825 CACACCCTACCCTTGGACTT 58.935 55.000 0.00 0.00 0.00 3.01
262 268 1.064825 ACACCCTACCCTTGGACTTG 58.935 55.000 0.00 0.00 0.00 3.16
263 269 1.358152 CACCCTACCCTTGGACTTGA 58.642 55.000 0.00 0.00 0.00 3.02
264 270 1.702957 CACCCTACCCTTGGACTTGAA 59.297 52.381 0.00 0.00 0.00 2.69
265 271 1.703513 ACCCTACCCTTGGACTTGAAC 59.296 52.381 0.00 0.00 0.00 3.18
266 272 1.004394 CCCTACCCTTGGACTTGAACC 59.996 57.143 0.00 0.00 0.00 3.62
267 273 1.004394 CCTACCCTTGGACTTGAACCC 59.996 57.143 0.00 0.00 0.00 4.11
268 274 1.985895 CTACCCTTGGACTTGAACCCT 59.014 52.381 0.00 0.00 0.00 4.34
269 275 0.478507 ACCCTTGGACTTGAACCCTG 59.521 55.000 0.00 0.00 0.00 4.45
270 276 0.251341 CCCTTGGACTTGAACCCTGG 60.251 60.000 0.00 0.00 0.00 4.45
271 277 0.478507 CCTTGGACTTGAACCCTGGT 59.521 55.000 0.00 0.00 0.00 4.00
272 278 1.609208 CTTGGACTTGAACCCTGGTG 58.391 55.000 0.00 0.00 0.00 4.17
273 279 0.184933 TTGGACTTGAACCCTGGTGG 59.815 55.000 0.00 0.00 41.37 4.61
284 290 3.728373 CTGGTGGGCTGGGGGTAC 61.728 72.222 0.00 0.00 0.00 3.34
300 306 1.829849 GGTACCACAGTCCCTCTAACC 59.170 57.143 7.15 0.00 0.00 2.85
301 307 2.532843 GTACCACAGTCCCTCTAACCA 58.467 52.381 0.00 0.00 0.00 3.67
302 308 1.349067 ACCACAGTCCCTCTAACCAC 58.651 55.000 0.00 0.00 0.00 4.16
303 309 0.613777 CCACAGTCCCTCTAACCACC 59.386 60.000 0.00 0.00 0.00 4.61
304 310 0.613777 CACAGTCCCTCTAACCACCC 59.386 60.000 0.00 0.00 0.00 4.61
305 311 0.192566 ACAGTCCCTCTAACCACCCA 59.807 55.000 0.00 0.00 0.00 4.51
306 312 1.358152 CAGTCCCTCTAACCACCCAA 58.642 55.000 0.00 0.00 0.00 4.12
307 313 1.003233 CAGTCCCTCTAACCACCCAAC 59.997 57.143 0.00 0.00 0.00 3.77
308 314 0.327259 GTCCCTCTAACCACCCAACC 59.673 60.000 0.00 0.00 0.00 3.77
309 315 0.104356 TCCCTCTAACCACCCAACCA 60.104 55.000 0.00 0.00 0.00 3.67
310 316 0.037734 CCCTCTAACCACCCAACCAC 59.962 60.000 0.00 0.00 0.00 4.16
311 317 1.064825 CCTCTAACCACCCAACCACT 58.935 55.000 0.00 0.00 0.00 4.00
312 318 1.271379 CCTCTAACCACCCAACCACTG 60.271 57.143 0.00 0.00 0.00 3.66
313 319 0.768622 TCTAACCACCCAACCACTGG 59.231 55.000 0.00 0.00 45.97 4.00
314 320 0.476771 CTAACCACCCAACCACTGGT 59.523 55.000 0.00 0.00 44.76 4.00
340 346 6.017026 TGGTTCGCACAGTAATTGTTTTATGA 60.017 34.615 0.00 0.00 38.16 2.15
347 353 7.275560 GCACAGTAATTGTTTTATGATTGGGTC 59.724 37.037 0.00 0.00 38.16 4.46
366 372 4.989168 GGGTCGCTTAGATTTACTACATGG 59.011 45.833 0.00 0.00 0.00 3.66
372 378 9.256477 TCGCTTAGATTTACTACATGGTAATTG 57.744 33.333 0.00 0.00 32.64 2.32
384 390 6.730960 ACATGGTAATTGGTTTACTACACG 57.269 37.500 0.00 0.00 40.14 4.49
400 406 5.114081 ACTACACGTTGCTTCACTTTTACT 58.886 37.500 0.00 0.00 0.00 2.24
417 423 7.538678 CACTTTTACTATCAATGAAGTGGTTGC 59.461 37.037 6.23 0.00 39.93 4.17
422 428 7.759489 ACTATCAATGAAGTGGTTGCTTTTA 57.241 32.000 0.00 0.00 0.00 1.52
463 469 5.749588 GGTTTAGTTTAATTTGTTGGTGCGT 59.250 36.000 0.00 0.00 0.00 5.24
465 471 3.120041 AGTTTAATTTGTTGGTGCGTGC 58.880 40.909 0.00 0.00 0.00 5.34
472 478 4.237207 TTGGTGCGTGCGGTGGTA 62.237 61.111 0.00 0.00 0.00 3.25
491 497 9.132521 CGGTGGTAGGAACGTAAAATTATATAG 57.867 37.037 0.00 0.00 0.00 1.31
492 498 9.428097 GGTGGTAGGAACGTAAAATTATATAGG 57.572 37.037 0.00 0.00 0.00 2.57
552 644 6.944234 GGTGTAGCCTTATTGCTTCTATTT 57.056 37.500 0.00 0.00 42.75 1.40
557 649 8.482943 TGTAGCCTTATTGCTTCTATTTCTACA 58.517 33.333 0.00 0.00 42.75 2.74
593 685 1.203038 TGGCCAACACCATCATGAACT 60.203 47.619 0.61 0.00 33.75 3.01
636 728 6.481643 TCTTTGGGTATCTTACAAGGAAAGG 58.518 40.000 0.00 0.00 29.03 3.11
745 838 6.553100 TGGTACCCTTGATGAAAAACAAATCT 59.447 34.615 10.07 0.00 0.00 2.40
760 857 6.980051 AACAAATCTACCACTAATTCCGTC 57.020 37.500 0.00 0.00 0.00 4.79
893 991 2.268920 CCGCTGGCCTCTGCTTTA 59.731 61.111 3.32 0.00 37.74 1.85
919 1017 1.129809 CGCGCAACAAACTCCGTAG 59.870 57.895 8.75 0.00 0.00 3.51
929 1027 0.798776 AACTCCGTAGTACGTCGTGG 59.201 55.000 20.60 5.82 40.58 4.94
964 1062 2.804931 GTGCGGCGCCATGTTTTC 60.805 61.111 30.82 6.16 0.00 2.29
1474 1581 3.939837 ATATCGATGCCAGCGCCGG 62.940 63.158 8.54 4.93 0.00 6.13
1534 1641 1.355066 GAAGAGAAGCAAGTCGGCGG 61.355 60.000 7.21 0.00 39.27 6.13
1725 1852 2.046217 GGCGGGTTTCTGACTCCC 60.046 66.667 6.34 6.34 37.98 4.30
2079 2210 3.314635 ACGAGATGGTTGTATAGTCGTCC 59.685 47.826 0.00 0.00 34.23 4.79
2119 2250 1.337728 TGGTGTGATCGTGTGATGGAC 60.338 52.381 0.00 0.00 34.09 4.02
2194 2329 7.490962 TCAAAGTAAAGTTGTCCTACACATG 57.509 36.000 0.00 0.00 33.90 3.21
2195 2330 7.276658 TCAAAGTAAAGTTGTCCTACACATGA 58.723 34.615 0.00 0.00 33.90 3.07
2207 2343 4.284490 TCCTACACATGATTCCATCCTAGC 59.716 45.833 0.00 0.00 0.00 3.42
2223 3337 0.827925 TAGCACTCCTCTATGGCCCG 60.828 60.000 0.00 0.00 35.26 6.13
2306 3420 6.808212 CGAAACAAGGCATAGAAACATCATTT 59.192 34.615 0.00 0.00 0.00 2.32
2335 3449 6.547510 ACTTAGGCTATCATCACATTTTTCCC 59.452 38.462 0.00 0.00 0.00 3.97
2338 3452 4.498009 GGCTATCATCACATTTTTCCCACG 60.498 45.833 0.00 0.00 0.00 4.94
2362 3801 7.117812 ACGTCTATTGTGTCAAAGGTCATTTAG 59.882 37.037 0.00 0.00 0.00 1.85
2528 3974 6.040166 AGGAAGCATTAAGGAGCAACATATTG 59.960 38.462 0.00 0.00 38.99 1.90
2539 3985 6.820656 AGGAGCAACATATTGACAAACTCTAG 59.179 38.462 0.00 0.00 38.15 2.43
2600 4046 3.055385 AGCCACCATAACGTGTATCAAGT 60.055 43.478 0.00 0.00 31.47 3.16
2606 4052 4.804139 CCATAACGTGTATCAAGTGTCCTC 59.196 45.833 0.00 0.00 0.00 3.71
2616 4062 8.184192 GTGTATCAAGTGTCCTCCATAATTTTG 58.816 37.037 0.00 0.00 0.00 2.44
2620 4066 7.685481 TCAAGTGTCCTCCATAATTTTGTAGA 58.315 34.615 0.00 0.00 0.00 2.59
2621 4067 7.824289 TCAAGTGTCCTCCATAATTTTGTAGAG 59.176 37.037 0.00 0.00 0.00 2.43
2633 4079 3.963428 TTTGTAGAGACTCTTGAGGCC 57.037 47.619 10.96 0.00 0.00 5.19
2636 4082 3.445008 TGTAGAGACTCTTGAGGCCATT 58.555 45.455 10.96 0.00 0.00 3.16
2662 4108 6.646653 TGCAAACACAAAATCGCCATAAATAA 59.353 30.769 0.00 0.00 0.00 1.40
2664 4110 7.687757 GCAAACACAAAATCGCCATAAATAAAG 59.312 33.333 0.00 0.00 0.00 1.85
2672 4118 8.871686 AAATCGCCATAAATAAAGCCTAAAAG 57.128 30.769 0.00 0.00 0.00 2.27
2689 4135 5.716703 CCTAAAAGAAATTCATGTGGGTCCT 59.283 40.000 0.00 0.00 0.00 3.85
2690 4136 5.473066 AAAAGAAATTCATGTGGGTCCTG 57.527 39.130 0.00 0.00 0.00 3.86
2715 4161 5.367945 TGTCTTTGGTTAACAAGACCTCT 57.632 39.130 24.84 0.00 40.82 3.69
2796 4242 2.362077 GTCGCATATGGGCCAAAAGAAT 59.638 45.455 11.89 0.00 0.00 2.40
2797 4243 3.568007 GTCGCATATGGGCCAAAAGAATA 59.432 43.478 11.89 0.00 0.00 1.75
2834 4280 0.322456 TTGAAAGACCCATGAGCCGG 60.322 55.000 0.00 0.00 0.00 6.13
2835 4281 2.044946 AAAGACCCATGAGCCGGC 60.045 61.111 21.89 21.89 0.00 6.13
2923 4369 9.674824 ATTATTCTACTACGATTTCAACTACGG 57.325 33.333 0.00 0.00 0.00 4.02
2924 4370 5.490139 TCTACTACGATTTCAACTACGGG 57.510 43.478 0.00 0.00 0.00 5.28
2925 4371 2.884827 ACTACGATTTCAACTACGGGC 58.115 47.619 0.00 0.00 0.00 6.13
2926 4372 1.850441 CTACGATTTCAACTACGGGCG 59.150 52.381 0.00 0.00 0.00 6.13
2927 4373 1.347221 CGATTTCAACTACGGGCGC 59.653 57.895 0.00 0.00 0.00 6.53
2928 4374 1.082117 CGATTTCAACTACGGGCGCT 61.082 55.000 7.64 0.00 0.00 5.92
2929 4375 0.651031 GATTTCAACTACGGGCGCTC 59.349 55.000 7.64 0.06 0.00 5.03
2930 4376 0.743345 ATTTCAACTACGGGCGCTCC 60.743 55.000 7.64 6.04 0.00 4.70
2941 4387 3.774702 GCGCTCCGTCCGTTTGAC 61.775 66.667 0.00 0.00 40.81 3.18
2942 4388 2.049433 CGCTCCGTCCGTTTGACT 60.049 61.111 0.00 0.00 42.13 3.41
2943 4389 1.663702 CGCTCCGTCCGTTTGACTT 60.664 57.895 0.00 0.00 42.13 3.01
2944 4390 1.860078 GCTCCGTCCGTTTGACTTG 59.140 57.895 0.00 0.00 42.13 3.16
2945 4391 0.878961 GCTCCGTCCGTTTGACTTGT 60.879 55.000 0.00 0.00 42.13 3.16
2946 4392 0.859232 CTCCGTCCGTTTGACTTGTG 59.141 55.000 0.00 0.00 42.13 3.33
2947 4393 0.531090 TCCGTCCGTTTGACTTGTGG 60.531 55.000 0.00 0.00 42.13 4.17
2948 4394 1.503818 CCGTCCGTTTGACTTGTGGG 61.504 60.000 0.00 0.00 42.13 4.61
2949 4395 1.652563 GTCCGTTTGACTTGTGGGC 59.347 57.895 0.00 0.00 41.03 5.36
2950 4396 1.890041 TCCGTTTGACTTGTGGGCG 60.890 57.895 0.00 0.00 0.00 6.13
2951 4397 1.890041 CCGTTTGACTTGTGGGCGA 60.890 57.895 0.00 0.00 0.00 5.54
2952 4398 1.569493 CGTTTGACTTGTGGGCGAG 59.431 57.895 0.00 0.00 0.00 5.03
2953 4399 1.841663 CGTTTGACTTGTGGGCGAGG 61.842 60.000 0.00 0.00 0.00 4.63
2954 4400 1.228124 TTTGACTTGTGGGCGAGGG 60.228 57.895 0.00 0.00 0.00 4.30
2955 4401 1.701031 TTTGACTTGTGGGCGAGGGA 61.701 55.000 0.00 0.00 0.00 4.20
2956 4402 1.488705 TTGACTTGTGGGCGAGGGAT 61.489 55.000 0.00 0.00 0.00 3.85
2957 4403 1.450312 GACTTGTGGGCGAGGGATG 60.450 63.158 0.00 0.00 0.00 3.51
2958 4404 2.825836 CTTGTGGGCGAGGGATGC 60.826 66.667 0.00 0.00 0.00 3.91
2959 4405 3.329889 TTGTGGGCGAGGGATGCT 61.330 61.111 0.00 0.00 0.00 3.79
2960 4406 2.826777 CTTGTGGGCGAGGGATGCTT 62.827 60.000 0.00 0.00 0.00 3.91
2961 4407 2.514824 GTGGGCGAGGGATGCTTC 60.515 66.667 0.00 0.00 0.00 3.86
2962 4408 4.161295 TGGGCGAGGGATGCTTCG 62.161 66.667 14.46 14.46 39.69 3.79
2963 4409 4.918201 GGGCGAGGGATGCTTCGG 62.918 72.222 19.76 2.71 37.30 4.30
2965 4411 4.537433 GCGAGGGATGCTTCGGCT 62.537 66.667 19.76 0.00 42.37 5.52
2966 4412 3.129300 CGAGGGATGCTTCGGCTA 58.871 61.111 10.99 0.00 42.37 3.93
2967 4413 1.300233 CGAGGGATGCTTCGGCTAC 60.300 63.158 10.99 0.00 42.37 3.58
2968 4414 1.739338 CGAGGGATGCTTCGGCTACT 61.739 60.000 10.99 0.00 42.37 2.57
2969 4415 0.466124 GAGGGATGCTTCGGCTACTT 59.534 55.000 0.00 0.00 42.37 2.24
2970 4416 0.912486 AGGGATGCTTCGGCTACTTT 59.088 50.000 0.00 0.00 42.37 2.66
2971 4417 1.134371 AGGGATGCTTCGGCTACTTTC 60.134 52.381 0.00 0.00 42.37 2.62
2972 4418 1.406887 GGGATGCTTCGGCTACTTTCA 60.407 52.381 0.00 0.00 42.37 2.69
2973 4419 1.666189 GGATGCTTCGGCTACTTTCAC 59.334 52.381 0.00 0.00 42.37 3.18
2974 4420 2.622436 GATGCTTCGGCTACTTTCACT 58.378 47.619 0.00 0.00 42.37 3.41
2975 4421 2.543777 TGCTTCGGCTACTTTCACTT 57.456 45.000 0.00 0.00 42.37 3.16
2976 4422 2.413837 TGCTTCGGCTACTTTCACTTC 58.586 47.619 0.00 0.00 42.37 3.01
2977 4423 1.732809 GCTTCGGCTACTTTCACTTCC 59.267 52.381 0.00 0.00 38.08 3.46
2978 4424 2.870435 GCTTCGGCTACTTTCACTTCCA 60.870 50.000 0.00 0.00 38.08 3.53
2979 4425 2.450609 TCGGCTACTTTCACTTCCAC 57.549 50.000 0.00 0.00 0.00 4.02
2980 4426 1.068474 CGGCTACTTTCACTTCCACG 58.932 55.000 0.00 0.00 0.00 4.94
2981 4427 1.439679 GGCTACTTTCACTTCCACGG 58.560 55.000 0.00 0.00 0.00 4.94
2982 4428 1.270678 GGCTACTTTCACTTCCACGGT 60.271 52.381 0.00 0.00 0.00 4.83
2983 4429 2.067013 GCTACTTTCACTTCCACGGTC 58.933 52.381 0.00 0.00 0.00 4.79
2984 4430 2.547218 GCTACTTTCACTTCCACGGTCA 60.547 50.000 0.00 0.00 0.00 4.02
2985 4431 1.949465 ACTTTCACTTCCACGGTCAC 58.051 50.000 0.00 0.00 0.00 3.67
2986 4432 1.208535 ACTTTCACTTCCACGGTCACA 59.791 47.619 0.00 0.00 0.00 3.58
2987 4433 1.597663 CTTTCACTTCCACGGTCACAC 59.402 52.381 0.00 0.00 0.00 3.82
2988 4434 0.537653 TTCACTTCCACGGTCACACA 59.462 50.000 0.00 0.00 0.00 3.72
2989 4435 0.104120 TCACTTCCACGGTCACACAG 59.896 55.000 0.00 0.00 0.00 3.66
2990 4436 0.179084 CACTTCCACGGTCACACAGT 60.179 55.000 0.00 0.00 0.00 3.55
2991 4437 0.104304 ACTTCCACGGTCACACAGTC 59.896 55.000 0.00 0.00 0.00 3.51
2992 4438 0.939577 CTTCCACGGTCACACAGTCG 60.940 60.000 0.00 0.00 0.00 4.18
2993 4439 1.385756 TTCCACGGTCACACAGTCGA 61.386 55.000 0.00 0.00 0.00 4.20
2994 4440 1.660575 CCACGGTCACACAGTCGAC 60.661 63.158 7.70 7.70 0.00 4.20
2995 4441 2.009226 CACGGTCACACAGTCGACG 61.009 63.158 10.46 7.86 32.74 5.12
2996 4442 2.182181 ACGGTCACACAGTCGACGA 61.182 57.895 10.46 0.00 32.74 4.20
2997 4443 1.009335 CGGTCACACAGTCGACGAA 60.009 57.895 10.46 0.00 32.74 3.85
2998 4444 1.266786 CGGTCACACAGTCGACGAAC 61.267 60.000 10.46 2.50 32.74 3.95
2999 4445 1.266786 GGTCACACAGTCGACGAACG 61.267 60.000 10.46 2.86 44.09 3.95
3000 4446 1.656263 TCACACAGTCGACGAACGC 60.656 57.895 10.46 0.00 42.26 4.84
3001 4447 1.942223 CACACAGTCGACGAACGCA 60.942 57.895 10.46 0.00 42.26 5.24
3002 4448 1.007734 ACACAGTCGACGAACGCAT 60.008 52.632 10.46 0.00 42.26 4.73
3003 4449 1.275471 ACACAGTCGACGAACGCATG 61.275 55.000 10.46 3.43 42.26 4.06
3004 4450 1.007734 ACAGTCGACGAACGCATGT 60.008 52.632 10.46 4.13 42.26 3.21
3005 4451 1.275471 ACAGTCGACGAACGCATGTG 61.275 55.000 10.46 4.30 42.26 3.21
3006 4452 2.093983 GTCGACGAACGCATGTGC 59.906 61.111 6.08 0.00 42.26 4.57
3018 4464 2.584166 GCATGTGCGATCTTAATCCG 57.416 50.000 0.00 0.00 0.00 4.18
3019 4465 1.195448 GCATGTGCGATCTTAATCCGG 59.805 52.381 0.00 0.00 0.00 5.14
3020 4466 1.800586 CATGTGCGATCTTAATCCGGG 59.199 52.381 0.00 0.00 0.00 5.73
3021 4467 1.116308 TGTGCGATCTTAATCCGGGA 58.884 50.000 0.00 0.00 0.00 5.14
3022 4468 1.068588 TGTGCGATCTTAATCCGGGAG 59.931 52.381 0.00 0.00 0.00 4.30
3023 4469 1.340248 GTGCGATCTTAATCCGGGAGA 59.660 52.381 0.00 0.51 0.00 3.71
3024 4470 2.036387 TGCGATCTTAATCCGGGAGAA 58.964 47.619 0.00 0.00 0.00 2.87
3025 4471 2.035961 TGCGATCTTAATCCGGGAGAAG 59.964 50.000 0.00 12.98 0.00 2.85
3026 4472 2.610727 GCGATCTTAATCCGGGAGAAGG 60.611 54.545 17.09 3.62 0.00 3.46
3027 4473 2.610727 CGATCTTAATCCGGGAGAAGGC 60.611 54.545 17.09 10.98 0.00 4.35
3028 4474 1.129058 TCTTAATCCGGGAGAAGGCC 58.871 55.000 17.09 0.00 0.00 5.19
3029 4475 0.837272 CTTAATCCGGGAGAAGGCCA 59.163 55.000 5.01 0.00 0.00 5.36
3030 4476 0.544697 TTAATCCGGGAGAAGGCCAC 59.455 55.000 5.01 0.00 0.00 5.01
3031 4477 0.619255 TAATCCGGGAGAAGGCCACA 60.619 55.000 5.01 0.00 0.00 4.17
3032 4478 1.497309 AATCCGGGAGAAGGCCACAA 61.497 55.000 5.01 0.00 0.00 3.33
3033 4479 2.198304 ATCCGGGAGAAGGCCACAAC 62.198 60.000 5.01 0.00 0.00 3.32
3034 4480 2.750350 CGGGAGAAGGCCACAACT 59.250 61.111 5.01 0.00 0.00 3.16
3035 4481 1.073199 CGGGAGAAGGCCACAACTT 59.927 57.895 5.01 0.00 0.00 2.66
3036 4482 0.537371 CGGGAGAAGGCCACAACTTT 60.537 55.000 5.01 0.00 0.00 2.66
3037 4483 1.271163 CGGGAGAAGGCCACAACTTTA 60.271 52.381 5.01 0.00 0.00 1.85
3038 4484 2.618045 CGGGAGAAGGCCACAACTTTAT 60.618 50.000 5.01 0.00 0.00 1.40
3039 4485 3.370103 CGGGAGAAGGCCACAACTTTATA 60.370 47.826 5.01 0.00 0.00 0.98
3040 4486 4.686122 CGGGAGAAGGCCACAACTTTATAT 60.686 45.833 5.01 0.00 0.00 0.86
3041 4487 4.822350 GGGAGAAGGCCACAACTTTATATC 59.178 45.833 5.01 0.00 0.00 1.63
3042 4488 4.822350 GGAGAAGGCCACAACTTTATATCC 59.178 45.833 5.01 0.00 0.00 2.59
3043 4489 4.793201 AGAAGGCCACAACTTTATATCCC 58.207 43.478 5.01 0.00 0.00 3.85
3044 4490 4.478686 AGAAGGCCACAACTTTATATCCCT 59.521 41.667 5.01 0.00 0.00 4.20
3045 4491 4.439253 AGGCCACAACTTTATATCCCTC 57.561 45.455 5.01 0.00 0.00 4.30
3046 4492 4.047883 AGGCCACAACTTTATATCCCTCT 58.952 43.478 5.01 0.00 0.00 3.69
3047 4493 5.224441 AGGCCACAACTTTATATCCCTCTA 58.776 41.667 5.01 0.00 0.00 2.43
3048 4494 5.852250 AGGCCACAACTTTATATCCCTCTAT 59.148 40.000 5.01 0.00 0.00 1.98
3049 4495 6.332901 AGGCCACAACTTTATATCCCTCTATT 59.667 38.462 5.01 0.00 0.00 1.73
3050 4496 7.516209 AGGCCACAACTTTATATCCCTCTATTA 59.484 37.037 5.01 0.00 0.00 0.98
3051 4497 7.606839 GGCCACAACTTTATATCCCTCTATTAC 59.393 40.741 0.00 0.00 0.00 1.89
3052 4498 7.606839 GCCACAACTTTATATCCCTCTATTACC 59.393 40.741 0.00 0.00 0.00 2.85
3053 4499 7.817962 CCACAACTTTATATCCCTCTATTACCG 59.182 40.741 0.00 0.00 0.00 4.02
3054 4500 8.365647 CACAACTTTATATCCCTCTATTACCGT 58.634 37.037 0.00 0.00 0.00 4.83
3055 4501 8.365647 ACAACTTTATATCCCTCTATTACCGTG 58.634 37.037 0.00 0.00 0.00 4.94
3056 4502 6.932947 ACTTTATATCCCTCTATTACCGTGC 58.067 40.000 0.00 0.00 0.00 5.34
3057 4503 5.927281 TTATATCCCTCTATTACCGTGCC 57.073 43.478 0.00 0.00 0.00 5.01
3058 4504 0.966920 ATCCCTCTATTACCGTGCCG 59.033 55.000 0.00 0.00 0.00 5.69
3059 4505 0.396139 TCCCTCTATTACCGTGCCGT 60.396 55.000 0.00 0.00 0.00 5.68
3060 4506 0.031721 CCCTCTATTACCGTGCCGTC 59.968 60.000 0.00 0.00 0.00 4.79
3061 4507 0.031721 CCTCTATTACCGTGCCGTCC 59.968 60.000 0.00 0.00 0.00 4.79
3062 4508 0.317603 CTCTATTACCGTGCCGTCCG 60.318 60.000 0.00 0.00 0.00 4.79
3063 4509 1.031571 TCTATTACCGTGCCGTCCGT 61.032 55.000 0.00 0.00 0.00 4.69
3064 4510 0.179129 CTATTACCGTGCCGTCCGTT 60.179 55.000 0.00 0.00 0.00 4.44
3065 4511 0.246086 TATTACCGTGCCGTCCGTTT 59.754 50.000 0.00 0.00 0.00 3.60
3066 4512 1.015607 ATTACCGTGCCGTCCGTTTC 61.016 55.000 0.00 0.00 0.00 2.78
3067 4513 2.086251 TTACCGTGCCGTCCGTTTCT 62.086 55.000 0.00 0.00 0.00 2.52
3068 4514 2.752322 TACCGTGCCGTCCGTTTCTG 62.752 60.000 0.00 0.00 0.00 3.02
3069 4515 4.072088 CGTGCCGTCCGTTTCTGC 62.072 66.667 0.00 0.00 0.00 4.26
3070 4516 3.723348 GTGCCGTCCGTTTCTGCC 61.723 66.667 0.00 0.00 0.00 4.85
3071 4517 3.936203 TGCCGTCCGTTTCTGCCT 61.936 61.111 0.00 0.00 0.00 4.75
3072 4518 2.263540 GCCGTCCGTTTCTGCCTA 59.736 61.111 0.00 0.00 0.00 3.93
3073 4519 1.375013 GCCGTCCGTTTCTGCCTAA 60.375 57.895 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.070001 AGCAAAACTACCTGCAATGTTAGA 58.930 37.500 0.00 0.00 41.17 2.10
71 74 3.501950 CCGAAGGCTAAAAGAATTGCAC 58.498 45.455 0.00 0.00 46.14 4.57
89 92 5.105064 CCATAAACTTCTAAACCTCCTCCGA 60.105 44.000 0.00 0.00 0.00 4.55
168 174 8.662141 GTGAGTCTGTACTGTGTTAAAGAAAAA 58.338 33.333 0.00 0.00 35.56 1.94
169 175 7.009815 CGTGAGTCTGTACTGTGTTAAAGAAAA 59.990 37.037 0.00 0.00 35.56 2.29
170 176 6.474427 CGTGAGTCTGTACTGTGTTAAAGAAA 59.526 38.462 0.00 0.00 35.56 2.52
171 177 5.975344 CGTGAGTCTGTACTGTGTTAAAGAA 59.025 40.000 0.00 0.00 35.56 2.52
172 178 5.516996 CGTGAGTCTGTACTGTGTTAAAGA 58.483 41.667 0.00 0.00 35.56 2.52
173 179 4.148348 GCGTGAGTCTGTACTGTGTTAAAG 59.852 45.833 0.00 0.00 35.56 1.85
174 180 4.046462 GCGTGAGTCTGTACTGTGTTAAA 58.954 43.478 0.00 0.00 35.56 1.52
175 181 3.635331 GCGTGAGTCTGTACTGTGTTAA 58.365 45.455 0.00 0.00 35.56 2.01
176 182 2.350102 CGCGTGAGTCTGTACTGTGTTA 60.350 50.000 0.00 0.00 35.56 2.41
177 183 1.599667 CGCGTGAGTCTGTACTGTGTT 60.600 52.381 0.00 0.00 35.56 3.32
178 184 0.040336 CGCGTGAGTCTGTACTGTGT 60.040 55.000 0.00 0.00 35.56 3.72
179 185 1.337817 GCGCGTGAGTCTGTACTGTG 61.338 60.000 8.43 0.00 35.56 3.66
180 186 1.081376 GCGCGTGAGTCTGTACTGT 60.081 57.895 8.43 0.00 35.56 3.55
181 187 0.794981 GAGCGCGTGAGTCTGTACTG 60.795 60.000 8.43 0.00 35.56 2.74
182 188 1.235281 TGAGCGCGTGAGTCTGTACT 61.235 55.000 8.43 0.00 39.21 2.73
183 189 0.179161 ATGAGCGCGTGAGTCTGTAC 60.179 55.000 8.43 0.00 0.00 2.90
184 190 1.375551 TATGAGCGCGTGAGTCTGTA 58.624 50.000 8.43 0.00 0.00 2.74
185 191 0.741326 ATATGAGCGCGTGAGTCTGT 59.259 50.000 8.43 0.00 0.00 3.41
186 192 2.287009 TGTATATGAGCGCGTGAGTCTG 60.287 50.000 8.43 0.00 0.00 3.51
187 193 1.947456 TGTATATGAGCGCGTGAGTCT 59.053 47.619 8.43 0.00 0.00 3.24
188 194 2.401017 TGTATATGAGCGCGTGAGTC 57.599 50.000 8.43 0.05 0.00 3.36
189 195 2.666026 CATGTATATGAGCGCGTGAGT 58.334 47.619 8.43 0.00 36.36 3.41
190 196 1.388093 GCATGTATATGAGCGCGTGAG 59.612 52.381 8.43 0.00 36.36 3.51
191 197 1.418373 GCATGTATATGAGCGCGTGA 58.582 50.000 8.43 0.00 36.36 4.35
192 198 0.091846 CGCATGTATATGAGCGCGTG 59.908 55.000 8.43 0.00 43.80 5.34
193 199 2.434688 CGCATGTATATGAGCGCGT 58.565 52.632 8.43 0.00 43.80 6.01
198 204 5.061435 GTGAGTGTATGCGCATGTATATGAG 59.939 44.000 32.48 0.87 36.36 2.90
199 205 4.923281 GTGAGTGTATGCGCATGTATATGA 59.077 41.667 32.48 8.02 36.36 2.15
200 206 4.091945 GGTGAGTGTATGCGCATGTATATG 59.908 45.833 32.48 0.00 37.36 1.78
201 207 4.245660 GGTGAGTGTATGCGCATGTATAT 58.754 43.478 32.48 14.31 0.00 0.86
202 208 3.068873 TGGTGAGTGTATGCGCATGTATA 59.931 43.478 32.48 10.12 0.00 1.47
203 209 2.158971 TGGTGAGTGTATGCGCATGTAT 60.159 45.455 32.48 15.41 0.00 2.29
204 210 1.205893 TGGTGAGTGTATGCGCATGTA 59.794 47.619 32.48 17.97 0.00 2.29
205 211 0.036483 TGGTGAGTGTATGCGCATGT 60.036 50.000 32.48 11.40 0.00 3.21
206 212 0.374758 GTGGTGAGTGTATGCGCATG 59.625 55.000 32.48 0.00 0.00 4.06
207 213 0.250234 AGTGGTGAGTGTATGCGCAT 59.750 50.000 28.23 28.23 0.00 4.73
208 214 0.892063 TAGTGGTGAGTGTATGCGCA 59.108 50.000 14.96 14.96 0.00 6.09
209 215 1.860950 CATAGTGGTGAGTGTATGCGC 59.139 52.381 0.00 0.00 0.00 6.09
210 216 3.436700 TCATAGTGGTGAGTGTATGCG 57.563 47.619 0.00 0.00 0.00 4.73
211 217 3.551890 CGTTCATAGTGGTGAGTGTATGC 59.448 47.826 0.00 0.00 0.00 3.14
212 218 3.551890 GCGTTCATAGTGGTGAGTGTATG 59.448 47.826 0.00 0.00 0.00 2.39
213 219 3.194755 TGCGTTCATAGTGGTGAGTGTAT 59.805 43.478 0.00 0.00 0.00 2.29
214 220 2.559231 TGCGTTCATAGTGGTGAGTGTA 59.441 45.455 0.00 0.00 0.00 2.90
215 221 1.343142 TGCGTTCATAGTGGTGAGTGT 59.657 47.619 0.00 0.00 0.00 3.55
216 222 1.726791 GTGCGTTCATAGTGGTGAGTG 59.273 52.381 0.00 0.00 0.00 3.51
217 223 1.343142 TGTGCGTTCATAGTGGTGAGT 59.657 47.619 0.00 0.00 0.00 3.41
218 224 1.726791 GTGTGCGTTCATAGTGGTGAG 59.273 52.381 0.00 0.00 0.00 3.51
219 225 1.069358 TGTGTGCGTTCATAGTGGTGA 59.931 47.619 0.00 0.00 0.00 4.02
220 226 1.194547 GTGTGTGCGTTCATAGTGGTG 59.805 52.381 0.00 0.00 0.00 4.17
221 227 1.508632 GTGTGTGCGTTCATAGTGGT 58.491 50.000 0.00 0.00 0.00 4.16
222 228 0.438445 CGTGTGTGCGTTCATAGTGG 59.562 55.000 0.00 0.00 0.00 4.00
223 229 0.179250 GCGTGTGTGCGTTCATAGTG 60.179 55.000 0.00 0.00 0.00 2.74
224 230 0.598942 TGCGTGTGTGCGTTCATAGT 60.599 50.000 0.00 0.00 37.81 2.12
225 231 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
226 232 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
227 233 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
228 234 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
229 235 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
230 236 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
233 239 2.280524 TAGGGTGTGCGTGTGTGC 60.281 61.111 0.00 0.00 0.00 4.57
234 240 1.959226 GGTAGGGTGTGCGTGTGTG 60.959 63.158 0.00 0.00 0.00 3.82
235 241 2.424302 GGTAGGGTGTGCGTGTGT 59.576 61.111 0.00 0.00 0.00 3.72
236 242 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
237 243 2.144738 AAGGGTAGGGTGTGCGTGT 61.145 57.895 0.00 0.00 0.00 4.49
238 244 1.671054 CAAGGGTAGGGTGTGCGTG 60.671 63.158 0.00 0.00 0.00 5.34
239 245 2.747686 CAAGGGTAGGGTGTGCGT 59.252 61.111 0.00 0.00 0.00 5.24
240 246 2.046314 CCAAGGGTAGGGTGTGCG 60.046 66.667 0.00 0.00 0.00 5.34
241 247 1.002502 GTCCAAGGGTAGGGTGTGC 60.003 63.158 0.00 0.00 0.00 4.57
242 248 1.064825 AAGTCCAAGGGTAGGGTGTG 58.935 55.000 0.00 0.00 0.00 3.82
243 249 1.064825 CAAGTCCAAGGGTAGGGTGT 58.935 55.000 0.00 0.00 0.00 4.16
244 250 1.358152 TCAAGTCCAAGGGTAGGGTG 58.642 55.000 0.00 0.00 0.00 4.61
245 251 1.703513 GTTCAAGTCCAAGGGTAGGGT 59.296 52.381 0.00 0.00 0.00 4.34
246 252 1.004394 GGTTCAAGTCCAAGGGTAGGG 59.996 57.143 0.00 0.00 0.00 3.53
247 253 1.004394 GGGTTCAAGTCCAAGGGTAGG 59.996 57.143 0.00 0.00 0.00 3.18
248 254 1.985895 AGGGTTCAAGTCCAAGGGTAG 59.014 52.381 0.00 0.00 0.00 3.18
249 255 1.702957 CAGGGTTCAAGTCCAAGGGTA 59.297 52.381 0.00 0.00 0.00 3.69
250 256 0.478507 CAGGGTTCAAGTCCAAGGGT 59.521 55.000 0.00 0.00 0.00 4.34
251 257 0.251341 CCAGGGTTCAAGTCCAAGGG 60.251 60.000 0.00 0.00 0.00 3.95
252 258 0.478507 ACCAGGGTTCAAGTCCAAGG 59.521 55.000 0.00 0.00 0.00 3.61
253 259 1.609208 CACCAGGGTTCAAGTCCAAG 58.391 55.000 0.00 0.00 0.00 3.61
254 260 0.184933 CCACCAGGGTTCAAGTCCAA 59.815 55.000 0.00 0.00 0.00 3.53
255 261 1.843421 CCACCAGGGTTCAAGTCCA 59.157 57.895 0.00 0.00 0.00 4.02
256 262 4.821935 CCACCAGGGTTCAAGTCC 57.178 61.111 0.00 0.00 0.00 3.85
267 273 3.728373 GTACCCCCAGCCCACCAG 61.728 72.222 0.00 0.00 0.00 4.00
270 276 4.043100 GTGGTACCCCCAGCCCAC 62.043 72.222 10.07 0.00 46.45 4.61
271 277 4.601297 TGTGGTACCCCCAGCCCA 62.601 66.667 10.07 0.00 46.45 5.36
272 278 3.728373 CTGTGGTACCCCCAGCCC 61.728 72.222 10.07 0.00 46.45 5.19
273 279 2.933834 ACTGTGGTACCCCCAGCC 60.934 66.667 22.28 1.42 46.45 4.85
274 280 2.669240 GACTGTGGTACCCCCAGC 59.331 66.667 22.28 14.23 46.45 4.85
275 281 2.298661 GGGACTGTGGTACCCCCAG 61.299 68.421 21.25 21.25 46.45 4.45
276 282 2.204029 GGGACTGTGGTACCCCCA 60.204 66.667 16.16 9.28 40.57 4.96
280 286 1.829849 GGTTAGAGGGACTGTGGTACC 59.170 57.143 4.43 4.43 46.75 3.34
281 287 2.233186 GTGGTTAGAGGGACTGTGGTAC 59.767 54.545 0.00 0.00 41.55 3.34
282 288 2.532843 GTGGTTAGAGGGACTGTGGTA 58.467 52.381 0.00 0.00 41.55 3.25
283 289 1.349067 GTGGTTAGAGGGACTGTGGT 58.651 55.000 0.00 0.00 41.55 4.16
284 290 0.613777 GGTGGTTAGAGGGACTGTGG 59.386 60.000 0.00 0.00 41.55 4.17
285 291 0.613777 GGGTGGTTAGAGGGACTGTG 59.386 60.000 0.00 0.00 41.55 3.66
286 292 0.192566 TGGGTGGTTAGAGGGACTGT 59.807 55.000 0.00 0.00 41.55 3.55
287 293 1.003233 GTTGGGTGGTTAGAGGGACTG 59.997 57.143 0.00 0.00 41.55 3.51
289 295 0.327259 GGTTGGGTGGTTAGAGGGAC 59.673 60.000 0.00 0.00 0.00 4.46
290 296 0.104356 TGGTTGGGTGGTTAGAGGGA 60.104 55.000 0.00 0.00 0.00 4.20
291 297 0.037734 GTGGTTGGGTGGTTAGAGGG 59.962 60.000 0.00 0.00 0.00 4.30
292 298 1.064825 AGTGGTTGGGTGGTTAGAGG 58.935 55.000 0.00 0.00 0.00 3.69
293 299 1.271379 CCAGTGGTTGGGTGGTTAGAG 60.271 57.143 0.00 0.00 43.75 2.43
294 300 0.768622 CCAGTGGTTGGGTGGTTAGA 59.231 55.000 0.00 0.00 43.75 2.10
295 301 3.339547 CCAGTGGTTGGGTGGTTAG 57.660 57.895 0.00 0.00 43.75 2.34
308 314 1.095228 ACTGTGCGAACCAACCAGTG 61.095 55.000 0.00 0.00 35.20 3.66
309 315 0.466543 TACTGTGCGAACCAACCAGT 59.533 50.000 0.00 0.00 39.53 4.00
310 316 1.588674 TTACTGTGCGAACCAACCAG 58.411 50.000 0.00 0.00 0.00 4.00
311 317 2.264005 ATTACTGTGCGAACCAACCA 57.736 45.000 0.00 0.00 0.00 3.67
312 318 2.292292 ACAATTACTGTGCGAACCAACC 59.708 45.455 0.00 0.00 36.69 3.77
313 319 3.619233 ACAATTACTGTGCGAACCAAC 57.381 42.857 0.00 0.00 36.69 3.77
314 320 4.640789 AAACAATTACTGTGCGAACCAA 57.359 36.364 0.00 0.00 38.67 3.67
315 321 4.640789 AAAACAATTACTGTGCGAACCA 57.359 36.364 0.00 0.00 38.67 3.67
316 322 6.375377 TCATAAAACAATTACTGTGCGAACC 58.625 36.000 0.00 0.00 38.67 3.62
317 323 8.365210 CAATCATAAAACAATTACTGTGCGAAC 58.635 33.333 0.00 0.00 38.67 3.95
318 324 7.540400 CCAATCATAAAACAATTACTGTGCGAA 59.460 33.333 0.00 0.00 38.67 4.70
319 325 7.026562 CCAATCATAAAACAATTACTGTGCGA 58.973 34.615 0.00 0.00 38.67 5.10
320 326 6.253298 CCCAATCATAAAACAATTACTGTGCG 59.747 38.462 0.00 0.00 38.67 5.34
321 327 7.096551 ACCCAATCATAAAACAATTACTGTGC 58.903 34.615 0.00 0.00 38.67 4.57
340 346 6.229936 TGTAGTAAATCTAAGCGACCCAAT 57.770 37.500 0.00 0.00 0.00 3.16
347 353 8.495949 CCAATTACCATGTAGTAAATCTAAGCG 58.504 37.037 0.00 0.00 35.90 4.68
366 372 6.232139 AGCAACGTGTAGTAAACCAATTAC 57.768 37.500 0.00 0.00 43.56 1.89
372 378 3.805971 AGTGAAGCAACGTGTAGTAAACC 59.194 43.478 0.00 0.00 0.00 3.27
380 386 5.756347 TGATAGTAAAAGTGAAGCAACGTGT 59.244 36.000 0.00 0.00 0.00 4.49
384 390 9.334693 CTTCATTGATAGTAAAAGTGAAGCAAC 57.665 33.333 0.00 0.00 36.02 4.17
400 406 8.121305 ACATAAAAGCAACCACTTCATTGATA 57.879 30.769 0.00 0.00 0.00 2.15
417 423 3.181534 CGTCACACGTGCCTACATAAAAG 60.182 47.826 17.22 0.00 36.74 2.27
422 428 1.080093 CCGTCACACGTGCCTACAT 60.080 57.895 17.22 0.00 40.58 2.29
441 447 5.232414 GCACGCACCAACAAATTAAACTAAA 59.768 36.000 0.00 0.00 0.00 1.85
442 448 4.740695 GCACGCACCAACAAATTAAACTAA 59.259 37.500 0.00 0.00 0.00 2.24
443 449 4.291783 GCACGCACCAACAAATTAAACTA 58.708 39.130 0.00 0.00 0.00 2.24
444 450 3.120041 GCACGCACCAACAAATTAAACT 58.880 40.909 0.00 0.00 0.00 2.66
445 451 2.097637 CGCACGCACCAACAAATTAAAC 60.098 45.455 0.00 0.00 0.00 2.01
463 469 0.678395 TTTACGTTCCTACCACCGCA 59.322 50.000 0.00 0.00 0.00 5.69
465 471 7.951530 ATATAATTTTACGTTCCTACCACCG 57.048 36.000 0.00 0.00 0.00 4.94
504 510 7.445402 CCTACAATTACTAATTCTCACCCATGG 59.555 40.741 4.14 4.14 0.00 3.66
593 685 1.655099 GATCGCGCTTTTGTAACCGTA 59.345 47.619 5.56 0.00 0.00 4.02
646 738 2.359354 TTCCACGGATGCAACGGG 60.359 61.111 16.85 13.25 35.23 5.28
655 747 0.387622 CGTAGCTTTCGTTCCACGGA 60.388 55.000 0.00 0.00 42.81 4.69
745 838 2.945447 CGTGGACGGAATTAGTGGTA 57.055 50.000 0.00 0.00 35.37 3.25
760 857 4.498520 ATCGCTGTCGCTCCGTGG 62.499 66.667 0.00 0.00 35.26 4.94
919 1017 2.488087 AAGCAGAGGCCACGACGTAC 62.488 60.000 5.01 0.00 42.56 3.67
964 1062 2.610232 CCGGTGGCTTGATTTGAAAAGG 60.610 50.000 0.00 0.00 0.00 3.11
1010 1108 4.081198 GGAGGGAATGATGGCTAGATACTG 60.081 50.000 0.00 0.00 0.00 2.74
1426 1533 2.430921 CGGCAAGAGAAGCGACGT 60.431 61.111 0.00 0.00 0.00 4.34
1449 1556 2.509336 GGCATCGATATCGGCGGG 60.509 66.667 24.12 12.36 40.29 6.13
1474 1581 1.372128 CTTTGCTTTCCACGGCTGC 60.372 57.895 0.00 0.00 0.00 5.25
1534 1641 4.430423 CAGAAGGCACGCGAACGC 62.430 66.667 15.93 12.60 45.53 4.84
1981 2109 2.126071 CAACTCGGTGTCGGCGAT 60.126 61.111 14.79 0.00 36.95 4.58
2079 2210 1.202734 ACCAAGGCAGGATCATCGATG 60.203 52.381 19.61 19.61 0.00 3.84
2119 2250 3.777465 CACAAATGCTCCATTGAGAGG 57.223 47.619 0.00 0.00 41.42 3.69
2174 2309 6.879458 GGAATCATGTGTAGGACAACTTTACT 59.121 38.462 0.00 0.00 38.36 2.24
2175 2310 6.653320 TGGAATCATGTGTAGGACAACTTTAC 59.347 38.462 0.00 0.00 38.36 2.01
2194 2329 3.238597 AGAGGAGTGCTAGGATGGAATC 58.761 50.000 0.00 0.00 44.55 2.52
2195 2330 3.342926 AGAGGAGTGCTAGGATGGAAT 57.657 47.619 0.00 0.00 0.00 3.01
2207 2343 1.051812 ATTCGGGCCATAGAGGAGTG 58.948 55.000 4.39 0.00 41.22 3.51
2281 3395 5.295431 TGATGTTTCTATGCCTTGTTTCG 57.705 39.130 0.00 0.00 0.00 3.46
2306 3420 4.486125 TGTGATGATAGCCTAAGTGCAA 57.514 40.909 0.00 0.00 0.00 4.08
2335 3449 4.055360 TGACCTTTGACACAATAGACGTG 58.945 43.478 0.00 0.00 40.32 4.49
2338 3452 8.230486 CACTAAATGACCTTTGACACAATAGAC 58.770 37.037 0.00 0.00 0.00 2.59
2362 3801 3.214328 ACCACAAGAAATCCTCACACAC 58.786 45.455 0.00 0.00 0.00 3.82
2491 3937 6.481644 CCTTAATGCTTCCTGATAGAAGTGAC 59.518 42.308 3.47 0.00 44.27 3.67
2528 3974 4.429108 CTCTAAGCAGCCTAGAGTTTGTC 58.571 47.826 17.17 0.00 34.27 3.18
2569 4015 2.030893 CGTTATGGTGGCTGCCAATATG 60.031 50.000 25.23 10.23 42.48 1.78
2600 4046 7.400339 AGAGTCTCTACAAAATTATGGAGGACA 59.600 37.037 0.00 0.00 35.55 4.02
2606 4052 7.011857 GCCTCAAGAGTCTCTACAAAATTATGG 59.988 40.741 1.88 0.00 0.00 2.74
2616 4062 4.187694 CAAATGGCCTCAAGAGTCTCTAC 58.812 47.826 3.32 0.00 0.00 2.59
2620 4066 1.074405 TGCAAATGGCCTCAAGAGTCT 59.926 47.619 3.32 0.00 43.89 3.24
2621 4067 1.538047 TGCAAATGGCCTCAAGAGTC 58.462 50.000 3.32 0.00 43.89 3.36
2633 4079 3.002042 TGGCGATTTTGTGTTTGCAAATG 59.998 39.130 16.21 0.00 38.05 2.32
2636 4082 2.299993 TGGCGATTTTGTGTTTGCAA 57.700 40.000 0.00 0.00 0.00 4.08
2662 4108 5.543790 ACCCACATGAATTTCTTTTAGGCTT 59.456 36.000 0.00 0.00 0.00 4.35
2664 4110 5.405935 ACCCACATGAATTTCTTTTAGGC 57.594 39.130 0.00 0.00 0.00 3.93
2672 4118 4.039124 ACAAACAGGACCCACATGAATTTC 59.961 41.667 0.00 0.00 34.19 2.17
2689 4135 5.712917 AGGTCTTGTTAACCAAAGACAAACA 59.287 36.000 27.12 0.00 39.39 2.83
2690 4136 6.095021 AGAGGTCTTGTTAACCAAAGACAAAC 59.905 38.462 27.12 20.15 39.39 2.93
2741 4187 5.873179 TTCGGCTCGAAGTTTAAATTCAT 57.127 34.783 5.99 0.00 41.05 2.57
2748 4194 3.062042 GTTCCTTTCGGCTCGAAGTTTA 58.938 45.455 9.43 0.00 46.43 2.01
2755 4201 0.673644 ACATGGTTCCTTTCGGCTCG 60.674 55.000 0.00 0.00 0.00 5.03
2757 4203 0.110486 ACACATGGTTCCTTTCGGCT 59.890 50.000 0.00 0.00 0.00 5.52
2778 4224 5.702209 CCATTTATTCTTTTGGCCCATATGC 59.298 40.000 0.00 0.00 0.00 3.14
2796 4242 8.325787 TCTTTCAAGCTAAGTATGACCCATTTA 58.674 33.333 0.00 0.00 0.00 1.40
2797 4243 7.121315 GTCTTTCAAGCTAAGTATGACCCATTT 59.879 37.037 0.00 0.00 0.00 2.32
2908 4354 1.356527 GCGCCCGTAGTTGAAATCGT 61.357 55.000 0.00 0.00 0.00 3.73
2909 4355 1.082117 AGCGCCCGTAGTTGAAATCG 61.082 55.000 2.29 0.00 0.00 3.34
2910 4356 0.651031 GAGCGCCCGTAGTTGAAATC 59.349 55.000 2.29 0.00 0.00 2.17
2911 4357 0.743345 GGAGCGCCCGTAGTTGAAAT 60.743 55.000 2.29 0.00 0.00 2.17
2912 4358 1.375013 GGAGCGCCCGTAGTTGAAA 60.375 57.895 2.29 0.00 0.00 2.69
2913 4359 2.263540 GGAGCGCCCGTAGTTGAA 59.736 61.111 2.29 0.00 0.00 2.69
2924 4370 3.774702 GTCAAACGGACGGAGCGC 61.775 66.667 0.00 0.00 36.65 5.92
2932 4378 1.890041 CGCCCACAAGTCAAACGGA 60.890 57.895 0.00 0.00 0.00 4.69
2933 4379 1.841663 CTCGCCCACAAGTCAAACGG 61.842 60.000 0.00 0.00 0.00 4.44
2934 4380 1.569493 CTCGCCCACAAGTCAAACG 59.431 57.895 0.00 0.00 0.00 3.60
2935 4381 1.515521 CCCTCGCCCACAAGTCAAAC 61.516 60.000 0.00 0.00 0.00 2.93
2936 4382 1.228124 CCCTCGCCCACAAGTCAAA 60.228 57.895 0.00 0.00 0.00 2.69
2937 4383 1.488705 ATCCCTCGCCCACAAGTCAA 61.489 55.000 0.00 0.00 0.00 3.18
2938 4384 1.918293 ATCCCTCGCCCACAAGTCA 60.918 57.895 0.00 0.00 0.00 3.41
2939 4385 1.450312 CATCCCTCGCCCACAAGTC 60.450 63.158 0.00 0.00 0.00 3.01
2940 4386 2.671070 CATCCCTCGCCCACAAGT 59.329 61.111 0.00 0.00 0.00 3.16
2941 4387 2.825836 GCATCCCTCGCCCACAAG 60.826 66.667 0.00 0.00 0.00 3.16
2942 4388 2.819984 GAAGCATCCCTCGCCCACAA 62.820 60.000 0.00 0.00 0.00 3.33
2943 4389 3.329542 GAAGCATCCCTCGCCCACA 62.330 63.158 0.00 0.00 0.00 4.17
2944 4390 2.514824 GAAGCATCCCTCGCCCAC 60.515 66.667 0.00 0.00 0.00 4.61
2945 4391 4.161295 CGAAGCATCCCTCGCCCA 62.161 66.667 0.00 0.00 0.00 5.36
2946 4392 4.918201 CCGAAGCATCCCTCGCCC 62.918 72.222 0.00 0.00 0.00 6.13
2948 4394 3.151958 TAGCCGAAGCATCCCTCGC 62.152 63.158 0.00 0.00 43.56 5.03
2949 4395 1.300233 GTAGCCGAAGCATCCCTCG 60.300 63.158 0.00 0.00 43.56 4.63
2950 4396 0.466124 AAGTAGCCGAAGCATCCCTC 59.534 55.000 0.00 0.00 43.56 4.30
2951 4397 0.912486 AAAGTAGCCGAAGCATCCCT 59.088 50.000 0.00 0.00 43.56 4.20
2952 4398 1.300481 GAAAGTAGCCGAAGCATCCC 58.700 55.000 0.00 0.00 43.56 3.85
2953 4399 1.666189 GTGAAAGTAGCCGAAGCATCC 59.334 52.381 0.00 0.00 43.56 3.51
2954 4400 2.622436 AGTGAAAGTAGCCGAAGCATC 58.378 47.619 0.00 0.00 43.56 3.91
2955 4401 2.770164 AGTGAAAGTAGCCGAAGCAT 57.230 45.000 0.00 0.00 43.56 3.79
2956 4402 2.413837 GAAGTGAAAGTAGCCGAAGCA 58.586 47.619 0.00 0.00 43.56 3.91
2957 4403 1.732809 GGAAGTGAAAGTAGCCGAAGC 59.267 52.381 0.00 0.00 40.32 3.86
2958 4404 2.737252 GTGGAAGTGAAAGTAGCCGAAG 59.263 50.000 0.00 0.00 0.00 3.79
2959 4405 2.762745 GTGGAAGTGAAAGTAGCCGAA 58.237 47.619 0.00 0.00 0.00 4.30
2960 4406 1.336517 CGTGGAAGTGAAAGTAGCCGA 60.337 52.381 0.00 0.00 0.00 5.54
2961 4407 1.068474 CGTGGAAGTGAAAGTAGCCG 58.932 55.000 0.00 0.00 0.00 5.52
2962 4408 1.270678 ACCGTGGAAGTGAAAGTAGCC 60.271 52.381 0.00 0.00 0.00 3.93
2963 4409 2.067013 GACCGTGGAAGTGAAAGTAGC 58.933 52.381 0.00 0.00 0.00 3.58
2964 4410 3.057734 GTGACCGTGGAAGTGAAAGTAG 58.942 50.000 0.00 0.00 0.00 2.57
2965 4411 2.431419 TGTGACCGTGGAAGTGAAAGTA 59.569 45.455 0.00 0.00 0.00 2.24
2966 4412 1.208535 TGTGACCGTGGAAGTGAAAGT 59.791 47.619 0.00 0.00 0.00 2.66
2967 4413 1.597663 GTGTGACCGTGGAAGTGAAAG 59.402 52.381 0.00 0.00 0.00 2.62
2968 4414 1.066071 TGTGTGACCGTGGAAGTGAAA 60.066 47.619 0.00 0.00 0.00 2.69
2969 4415 0.537653 TGTGTGACCGTGGAAGTGAA 59.462 50.000 0.00 0.00 0.00 3.18
2970 4416 0.104120 CTGTGTGACCGTGGAAGTGA 59.896 55.000 0.00 0.00 0.00 3.41
2971 4417 0.179084 ACTGTGTGACCGTGGAAGTG 60.179 55.000 0.00 0.00 0.00 3.16
2972 4418 0.104304 GACTGTGTGACCGTGGAAGT 59.896 55.000 0.00 0.00 0.00 3.01
2973 4419 0.939577 CGACTGTGTGACCGTGGAAG 60.940 60.000 0.00 0.00 0.00 3.46
2974 4420 1.066752 CGACTGTGTGACCGTGGAA 59.933 57.895 0.00 0.00 0.00 3.53
2975 4421 1.824760 TCGACTGTGTGACCGTGGA 60.825 57.895 0.00 0.00 0.00 4.02
2976 4422 1.660575 GTCGACTGTGTGACCGTGG 60.661 63.158 8.70 0.00 0.00 4.94
2977 4423 2.009226 CGTCGACTGTGTGACCGTG 61.009 63.158 14.70 0.00 0.00 4.94
2978 4424 1.717791 TTCGTCGACTGTGTGACCGT 61.718 55.000 14.70 0.00 0.00 4.83
2979 4425 1.009335 TTCGTCGACTGTGTGACCG 60.009 57.895 14.70 0.00 0.00 4.79
2980 4426 1.266786 CGTTCGTCGACTGTGTGACC 61.267 60.000 14.70 0.00 42.86 4.02
2981 4427 1.863110 GCGTTCGTCGACTGTGTGAC 61.863 60.000 14.70 2.37 42.86 3.67
2982 4428 1.656263 GCGTTCGTCGACTGTGTGA 60.656 57.895 14.70 0.00 42.86 3.58
2983 4429 1.275471 ATGCGTTCGTCGACTGTGTG 61.275 55.000 14.70 0.00 42.86 3.82
2984 4430 1.007734 ATGCGTTCGTCGACTGTGT 60.008 52.632 14.70 0.00 42.86 3.72
2985 4431 1.275471 ACATGCGTTCGTCGACTGTG 61.275 55.000 14.70 0.00 42.86 3.66
2986 4432 1.007734 ACATGCGTTCGTCGACTGT 60.008 52.632 14.70 6.26 42.86 3.55
2987 4433 1.412226 CACATGCGTTCGTCGACTG 59.588 57.895 14.70 7.51 42.86 3.51
2988 4434 2.372690 GCACATGCGTTCGTCGACT 61.373 57.895 14.70 0.00 42.86 4.18
2989 4435 2.093983 GCACATGCGTTCGTCGAC 59.906 61.111 5.18 5.18 42.86 4.20
2999 4445 1.195448 CCGGATTAAGATCGCACATGC 59.805 52.381 0.00 0.00 32.84 4.06
3000 4446 1.800586 CCCGGATTAAGATCGCACATG 59.199 52.381 0.73 0.00 32.84 3.21
3001 4447 1.691976 TCCCGGATTAAGATCGCACAT 59.308 47.619 0.73 0.00 32.84 3.21
3002 4448 1.068588 CTCCCGGATTAAGATCGCACA 59.931 52.381 0.73 0.00 32.84 4.57
3003 4449 1.340248 TCTCCCGGATTAAGATCGCAC 59.660 52.381 0.73 0.00 32.84 5.34
3004 4450 1.699730 TCTCCCGGATTAAGATCGCA 58.300 50.000 0.73 0.00 32.84 5.10
3005 4451 2.610727 CCTTCTCCCGGATTAAGATCGC 60.611 54.545 0.73 0.00 32.84 4.58
3006 4452 2.610727 GCCTTCTCCCGGATTAAGATCG 60.611 54.545 0.73 0.00 32.84 3.69
3007 4453 2.289756 GGCCTTCTCCCGGATTAAGATC 60.290 54.545 0.73 0.00 0.00 2.75
3008 4454 1.700186 GGCCTTCTCCCGGATTAAGAT 59.300 52.381 0.73 0.00 0.00 2.40
3009 4455 1.129058 GGCCTTCTCCCGGATTAAGA 58.871 55.000 0.73 0.00 0.00 2.10
3010 4456 0.837272 TGGCCTTCTCCCGGATTAAG 59.163 55.000 0.73 2.56 0.00 1.85
3011 4457 0.544697 GTGGCCTTCTCCCGGATTAA 59.455 55.000 0.73 0.00 0.00 1.40
3012 4458 0.619255 TGTGGCCTTCTCCCGGATTA 60.619 55.000 0.73 0.00 0.00 1.75
3013 4459 1.497309 TTGTGGCCTTCTCCCGGATT 61.497 55.000 0.73 0.00 0.00 3.01
3014 4460 1.923395 TTGTGGCCTTCTCCCGGAT 60.923 57.895 0.73 0.00 0.00 4.18
3015 4461 2.528127 TTGTGGCCTTCTCCCGGA 60.528 61.111 0.73 0.00 0.00 5.14
3016 4462 2.359975 GTTGTGGCCTTCTCCCGG 60.360 66.667 3.32 0.00 0.00 5.73
3017 4463 0.537371 AAAGTTGTGGCCTTCTCCCG 60.537 55.000 3.32 0.00 0.00 5.14
3018 4464 2.579410 TAAAGTTGTGGCCTTCTCCC 57.421 50.000 3.32 0.00 0.00 4.30
3019 4465 4.822350 GGATATAAAGTTGTGGCCTTCTCC 59.178 45.833 3.32 0.00 0.00 3.71
3020 4466 4.822350 GGGATATAAAGTTGTGGCCTTCTC 59.178 45.833 3.32 0.00 0.00 2.87
3021 4467 4.478686 AGGGATATAAAGTTGTGGCCTTCT 59.521 41.667 3.32 0.00 0.00 2.85
3022 4468 4.793201 AGGGATATAAAGTTGTGGCCTTC 58.207 43.478 3.32 0.00 0.00 3.46
3023 4469 4.478686 AGAGGGATATAAAGTTGTGGCCTT 59.521 41.667 3.32 0.00 0.00 4.35
3024 4470 4.047883 AGAGGGATATAAAGTTGTGGCCT 58.952 43.478 3.32 0.00 0.00 5.19
3025 4471 4.439253 AGAGGGATATAAAGTTGTGGCC 57.561 45.455 0.00 0.00 0.00 5.36
3026 4472 7.606839 GGTAATAGAGGGATATAAAGTTGTGGC 59.393 40.741 0.00 0.00 0.00 5.01
3027 4473 7.817962 CGGTAATAGAGGGATATAAAGTTGTGG 59.182 40.741 0.00 0.00 0.00 4.17
3028 4474 8.365647 ACGGTAATAGAGGGATATAAAGTTGTG 58.634 37.037 0.00 0.00 0.00 3.33
3029 4475 8.365647 CACGGTAATAGAGGGATATAAAGTTGT 58.634 37.037 0.00 0.00 0.00 3.32
3030 4476 7.331193 GCACGGTAATAGAGGGATATAAAGTTG 59.669 40.741 0.00 0.00 0.00 3.16
3031 4477 7.384477 GCACGGTAATAGAGGGATATAAAGTT 58.616 38.462 0.00 0.00 0.00 2.66
3032 4478 6.070938 GGCACGGTAATAGAGGGATATAAAGT 60.071 42.308 0.00 0.00 0.00 2.66
3033 4479 6.338937 GGCACGGTAATAGAGGGATATAAAG 58.661 44.000 0.00 0.00 0.00 1.85
3034 4480 6.290294 GGCACGGTAATAGAGGGATATAAA 57.710 41.667 0.00 0.00 0.00 1.40
3035 4481 5.927281 GGCACGGTAATAGAGGGATATAA 57.073 43.478 0.00 0.00 0.00 0.98
3053 4499 2.775032 TAGGCAGAAACGGACGGCAC 62.775 60.000 0.00 0.00 0.00 5.01
3054 4500 2.102109 TTAGGCAGAAACGGACGGCA 62.102 55.000 0.00 0.00 0.00 5.69
3055 4501 1.375013 TTAGGCAGAAACGGACGGC 60.375 57.895 0.00 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.