Multiple sequence alignment - TraesCS6D01G314600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G314600 chr6D 100.000 2858 0 0 1 2858 423169838 423172695 0.000000e+00 5278.0
1 TraesCS6D01G314600 chr6D 92.553 94 7 0 433 526 2103633 2103726 4.970000e-28 135.0
2 TraesCS6D01G314600 chr6B 90.019 2114 91 42 526 2561 637862854 637860783 0.000000e+00 2625.0
3 TraesCS6D01G314600 chr6B 89.593 442 32 9 1 436 637863289 637862856 1.500000e-152 549.0
4 TraesCS6D01G314600 chr6A 89.990 2088 77 44 535 2561 566431126 566429110 0.000000e+00 2577.0
5 TraesCS6D01G314600 chr6A 85.193 466 28 17 1 430 566433666 566433206 9.400000e-120 440.0
6 TraesCS6D01G314600 chr3B 84.971 346 34 10 99 442 782682702 782682373 4.560000e-88 335.0
7 TraesCS6D01G314600 chr3B 86.170 188 14 5 577 764 782682341 782682166 2.910000e-45 193.0
8 TraesCS6D01G314600 chr5A 83.807 352 39 9 93 442 652659310 652659645 4.590000e-83 318.0
9 TraesCS6D01G314600 chr5A 83.904 292 15 10 564 854 687294816 687295076 1.700000e-62 250.0
10 TraesCS6D01G314600 chr5A 84.286 280 14 11 577 854 652659677 652659928 2.200000e-61 246.0
11 TraesCS6D01G314600 chr5A 81.500 200 22 10 2674 2858 476665006 476664807 1.770000e-32 150.0
12 TraesCS6D01G314600 chr5B 83.573 347 39 9 98 442 529228259 529227929 2.770000e-80 309.0
13 TraesCS6D01G314600 chr5B 85.000 280 12 11 577 854 420374538 420374789 1.020000e-64 257.0
14 TraesCS6D01G314600 chr5B 84.286 280 14 11 577 854 529227897 529227646 2.200000e-61 246.0
15 TraesCS6D01G314600 chr5B 88.288 111 12 1 441 550 547268527 547268417 6.430000e-27 132.0
16 TraesCS6D01G314600 chr5B 77.982 218 33 11 2655 2857 706023340 706023557 3.870000e-24 122.0
17 TraesCS6D01G314600 chr7B 84.838 277 26 7 93 369 701325197 701324937 6.070000e-67 265.0
18 TraesCS6D01G314600 chr7B 85.283 265 11 10 592 854 472330921 472331159 6.110000e-62 248.0
19 TraesCS6D01G314600 chr7B 84.358 179 25 2 1274 1452 79051418 79051593 3.790000e-39 172.0
20 TraesCS6D01G314600 chr1B 84.643 280 13 13 577 854 593493159 593493410 4.730000e-63 252.0
21 TraesCS6D01G314600 chr7A 86.111 180 20 4 1274 1452 122207641 122207816 3.760000e-44 189.0
22 TraesCS6D01G314600 chr7A 91.753 97 7 1 434 529 238816403 238816499 1.790000e-27 134.0
23 TraesCS6D01G314600 chr7D 80.321 249 40 6 1274 1522 117792106 117792345 2.260000e-41 180.0
24 TraesCS6D01G314600 chr2D 92.784 97 6 1 434 529 650957647 650957743 3.840000e-29 139.0
25 TraesCS6D01G314600 chr2D 90.000 100 10 0 436 535 367218189 367218090 2.310000e-26 130.0
26 TraesCS6D01G314600 chr2D 91.579 95 6 2 433 526 367218091 367218184 2.310000e-26 130.0
27 TraesCS6D01G314600 chr3A 94.444 90 4 1 437 526 648870442 648870530 1.380000e-28 137.0
28 TraesCS6D01G314600 chr2B 91.753 97 8 0 430 526 37711080 37710984 4.970000e-28 135.0
29 TraesCS6D01G314600 chr1D 90.291 103 7 3 429 530 481558678 481558778 6.430000e-27 132.0
30 TraesCS6D01G314600 chr1D 95.556 45 2 0 1325 1369 212526729 212526773 3.950000e-09 73.1
31 TraesCS6D01G314600 chr1D 95.556 45 2 0 1325 1369 239620931 239620887 3.950000e-09 73.1
32 TraesCS6D01G314600 chr4D 95.082 61 1 2 1325 1384 51296327 51296268 8.430000e-16 95.3
33 TraesCS6D01G314600 chr4A 95.000 60 1 2 1325 1383 545215491 545215549 3.030000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G314600 chr6D 423169838 423172695 2857 False 5278.0 5278 100.0000 1 2858 1 chr6D.!!$F2 2857
1 TraesCS6D01G314600 chr6B 637860783 637863289 2506 True 1587.0 2625 89.8060 1 2561 2 chr6B.!!$R1 2560
2 TraesCS6D01G314600 chr6A 566429110 566433666 4556 True 1508.5 2577 87.5915 1 2561 2 chr6A.!!$R1 2560
3 TraesCS6D01G314600 chr3B 782682166 782682702 536 True 264.0 335 85.5705 99 764 2 chr3B.!!$R1 665
4 TraesCS6D01G314600 chr5A 652659310 652659928 618 False 282.0 318 84.0465 93 854 2 chr5A.!!$F2 761
5 TraesCS6D01G314600 chr5B 529227646 529228259 613 True 277.5 309 83.9295 98 854 2 chr5B.!!$R2 756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 2639 0.106619 ACGGAGGGAGTACTAGGCAG 60.107 60.0 0.0 0.0 0.00 4.85 F
567 2673 0.465097 GGGCTGACCATGAGTCCATG 60.465 60.0 0.0 0.0 45.68 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1716 3885 0.035458 CCTTCTCGTCCTTGCAGGTT 59.965 55.0 0.0 0.0 36.53 3.50 R
2373 4601 0.541392 ACATCGCATACCTGGCTTGA 59.459 50.0 0.0 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 3.303351 AGCCAACCTCCCATAAAGATG 57.697 47.619 0.00 0.00 0.00 2.90
75 76 0.698818 AAGAACAACCCTAGGGCCAG 59.301 55.000 28.88 19.38 39.32 4.85
159 160 3.755628 TCACAGGAGCCCGTACGC 61.756 66.667 10.49 0.00 0.00 4.42
160 161 4.814294 CACAGGAGCCCGTACGCC 62.814 72.222 10.49 5.57 0.00 5.68
209 215 2.501128 CATCGGTCGATGGGCACT 59.499 61.111 21.51 0.00 45.89 4.40
249 255 5.319140 TCATTGTGCATGAAGATGAAAGG 57.681 39.130 0.00 0.00 39.11 3.11
254 260 3.314635 GTGCATGAAGATGAAAGGCTAGG 59.685 47.826 0.00 0.00 0.00 3.02
271 290 4.560128 GCTAGGCCCAAAAGAAAAGAAAG 58.440 43.478 0.00 0.00 0.00 2.62
283 302 7.792374 AAAGAAAAGAAAGGAAATTTGCCTC 57.208 32.000 6.02 3.87 33.76 4.70
286 305 2.540383 AGAAAGGAAATTTGCCTCCCC 58.460 47.619 6.02 0.00 33.76 4.81
290 309 2.573463 AGGAAATTTGCCTCCCCTCTA 58.427 47.619 6.02 0.00 31.50 2.43
316 341 5.228945 CTAGCCTAGCTTTAAGCCCATAA 57.771 43.478 13.84 0.00 43.77 1.90
319 344 4.079730 AGCCTAGCTTTAAGCCCATAACTT 60.080 41.667 13.84 0.00 43.77 2.66
323 348 6.998673 CCTAGCTTTAAGCCCATAACTTGTAT 59.001 38.462 13.84 0.00 43.77 2.29
324 349 6.699575 AGCTTTAAGCCCATAACTTGTATG 57.300 37.500 13.84 0.00 43.77 2.39
336 372 1.490693 CTTGTATGGTAGCTGCGCGG 61.491 60.000 13.18 13.18 0.00 6.46
366 402 5.387342 CGATGCGTGTGTGTACATATATGTG 60.387 44.000 25.48 9.40 41.89 3.21
405 447 1.863454 CGAGAGTTATGTCATGCCTGC 59.137 52.381 0.00 0.00 0.00 4.85
407 449 0.940126 GAGTTATGTCATGCCTGCGG 59.060 55.000 0.00 0.00 0.00 5.69
436 2542 3.891977 TGATCGAGCTATTTCTGGCTACT 59.108 43.478 0.90 0.00 39.63 2.57
438 2544 5.535030 TGATCGAGCTATTTCTGGCTACTAA 59.465 40.000 0.90 0.00 39.63 2.24
439 2545 5.184340 TCGAGCTATTTCTGGCTACTAAC 57.816 43.478 0.00 0.00 39.63 2.34
440 2546 4.888239 TCGAGCTATTTCTGGCTACTAACT 59.112 41.667 0.00 0.00 39.63 2.24
441 2547 6.060136 TCGAGCTATTTCTGGCTACTAACTA 58.940 40.000 0.00 0.00 39.63 2.24
444 2550 7.279750 AGCTATTTCTGGCTACTAACTACTC 57.720 40.000 0.00 0.00 37.45 2.59
445 2551 7.064229 AGCTATTTCTGGCTACTAACTACTCT 58.936 38.462 0.00 0.00 37.45 3.24
447 2553 7.229907 GCTATTTCTGGCTACTAACTACTCTCT 59.770 40.741 0.00 0.00 0.00 3.10
448 2554 7.576861 ATTTCTGGCTACTAACTACTCTCTC 57.423 40.000 0.00 0.00 0.00 3.20
449 2555 5.038651 TCTGGCTACTAACTACTCTCTCC 57.961 47.826 0.00 0.00 0.00 3.71
450 2556 3.806380 TGGCTACTAACTACTCTCTCCG 58.194 50.000 0.00 0.00 0.00 4.63
451 2557 3.199508 TGGCTACTAACTACTCTCTCCGT 59.800 47.826 0.00 0.00 0.00 4.69
452 2558 4.198530 GGCTACTAACTACTCTCTCCGTT 58.801 47.826 0.00 0.00 0.00 4.44
453 2559 4.639755 GGCTACTAACTACTCTCTCCGTTT 59.360 45.833 0.00 0.00 0.00 3.60
454 2560 5.220835 GGCTACTAACTACTCTCTCCGTTTC 60.221 48.000 0.00 0.00 0.00 2.78
455 2561 5.353678 GCTACTAACTACTCTCTCCGTTTCA 59.646 44.000 0.00 0.00 0.00 2.69
456 2562 6.128063 GCTACTAACTACTCTCTCCGTTTCAA 60.128 42.308 0.00 0.00 0.00 2.69
457 2563 6.645790 ACTAACTACTCTCTCCGTTTCAAA 57.354 37.500 0.00 0.00 0.00 2.69
458 2564 7.047460 ACTAACTACTCTCTCCGTTTCAAAA 57.953 36.000 0.00 0.00 0.00 2.44
459 2565 7.668492 ACTAACTACTCTCTCCGTTTCAAAAT 58.332 34.615 0.00 0.00 0.00 1.82
460 2566 8.800332 ACTAACTACTCTCTCCGTTTCAAAATA 58.200 33.333 0.00 0.00 0.00 1.40
461 2567 9.635520 CTAACTACTCTCTCCGTTTCAAAATAA 57.364 33.333 0.00 0.00 0.00 1.40
462 2568 8.897872 AACTACTCTCTCCGTTTCAAAATAAA 57.102 30.769 0.00 0.00 0.00 1.40
463 2569 9.503399 AACTACTCTCTCCGTTTCAAAATAAAT 57.497 29.630 0.00 0.00 0.00 1.40
464 2570 8.936864 ACTACTCTCTCCGTTTCAAAATAAATG 58.063 33.333 0.00 0.00 0.00 2.32
465 2571 7.979444 ACTCTCTCCGTTTCAAAATAAATGA 57.021 32.000 0.00 0.00 0.00 2.57
466 2572 7.807680 ACTCTCTCCGTTTCAAAATAAATGAC 58.192 34.615 0.00 0.00 0.00 3.06
467 2573 7.094762 ACTCTCTCCGTTTCAAAATAAATGACC 60.095 37.037 0.00 0.00 0.00 4.02
468 2574 6.150474 TCTCTCCGTTTCAAAATAAATGACCC 59.850 38.462 0.00 0.00 0.00 4.46
469 2575 5.770663 TCTCCGTTTCAAAATAAATGACCCA 59.229 36.000 0.00 0.00 0.00 4.51
470 2576 6.265649 TCTCCGTTTCAAAATAAATGACCCAA 59.734 34.615 0.00 0.00 0.00 4.12
471 2577 6.217294 TCCGTTTCAAAATAAATGACCCAAC 58.783 36.000 0.00 0.00 0.00 3.77
472 2578 6.041069 TCCGTTTCAAAATAAATGACCCAACT 59.959 34.615 0.00 0.00 0.00 3.16
473 2579 6.704050 CCGTTTCAAAATAAATGACCCAACTT 59.296 34.615 0.00 0.00 0.00 2.66
474 2580 7.225734 CCGTTTCAAAATAAATGACCCAACTTT 59.774 33.333 0.00 0.00 0.00 2.66
475 2581 8.061268 CGTTTCAAAATAAATGACCCAACTTTG 58.939 33.333 0.00 0.00 0.00 2.77
476 2582 8.888716 GTTTCAAAATAAATGACCCAACTTTGT 58.111 29.630 0.00 0.00 0.00 2.83
479 2585 9.921637 TCAAAATAAATGACCCAACTTTGTATC 57.078 29.630 0.00 0.00 0.00 2.24
480 2586 9.703892 CAAAATAAATGACCCAACTTTGTATCA 57.296 29.630 0.00 0.00 0.00 2.15
487 2593 9.927668 AATGACCCAACTTTGTATCAAAATTAG 57.072 29.630 0.00 0.00 0.00 1.73
488 2594 8.472007 TGACCCAACTTTGTATCAAAATTAGT 57.528 30.769 0.00 0.00 0.00 2.24
489 2595 9.575868 TGACCCAACTTTGTATCAAAATTAGTA 57.424 29.630 0.00 0.00 0.00 1.82
490 2596 9.836076 GACCCAACTTTGTATCAAAATTAGTAC 57.164 33.333 0.00 0.00 0.00 2.73
491 2597 9.357161 ACCCAACTTTGTATCAAAATTAGTACA 57.643 29.630 0.00 0.00 0.00 2.90
500 2606 9.357161 TGTATCAAAATTAGTACAAAGTTGGGT 57.643 29.630 0.00 0.00 0.00 4.51
501 2607 9.836076 GTATCAAAATTAGTACAAAGTTGGGTC 57.164 33.333 0.00 0.00 0.00 4.46
502 2608 7.883391 TCAAAATTAGTACAAAGTTGGGTCA 57.117 32.000 0.00 0.00 0.00 4.02
503 2609 8.472007 TCAAAATTAGTACAAAGTTGGGTCAT 57.528 30.769 0.00 0.00 0.00 3.06
504 2610 8.573035 TCAAAATTAGTACAAAGTTGGGTCATC 58.427 33.333 0.00 0.00 0.00 2.92
505 2611 8.576442 CAAAATTAGTACAAAGTTGGGTCATCT 58.424 33.333 0.00 0.00 0.00 2.90
506 2612 9.802039 AAAATTAGTACAAAGTTGGGTCATCTA 57.198 29.630 0.00 0.00 0.00 1.98
507 2613 9.975218 AAATTAGTACAAAGTTGGGTCATCTAT 57.025 29.630 0.00 0.00 0.00 1.98
508 2614 9.975218 AATTAGTACAAAGTTGGGTCATCTATT 57.025 29.630 0.00 0.00 0.00 1.73
509 2615 9.975218 ATTAGTACAAAGTTGGGTCATCTATTT 57.025 29.630 0.00 0.00 0.00 1.40
510 2616 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
511 2617 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
512 2618 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
513 2619 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
514 2620 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
515 2621 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
516 2622 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
517 2623 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
518 2624 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
519 2625 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
520 2626 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
521 2627 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
522 2628 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
523 2629 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
524 2630 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
525 2631 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
526 2632 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
527 2633 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
528 2634 2.905415 TTGGAACGGAGGGAGTACTA 57.095 50.000 0.00 0.00 0.00 1.82
529 2635 2.431954 TGGAACGGAGGGAGTACTAG 57.568 55.000 0.00 0.00 0.00 2.57
530 2636 1.064166 TGGAACGGAGGGAGTACTAGG 60.064 57.143 0.00 0.00 0.00 3.02
531 2637 1.031235 GAACGGAGGGAGTACTAGGC 58.969 60.000 0.00 0.00 0.00 3.93
532 2638 0.333993 AACGGAGGGAGTACTAGGCA 59.666 55.000 0.00 0.00 0.00 4.75
533 2639 0.106619 ACGGAGGGAGTACTAGGCAG 60.107 60.000 0.00 0.00 0.00 4.85
561 2667 2.124983 CACCGGGCTGACCATGAG 60.125 66.667 6.32 0.00 40.22 2.90
562 2668 2.607750 ACCGGGCTGACCATGAGT 60.608 61.111 6.32 0.00 40.22 3.41
563 2669 2.187946 CCGGGCTGACCATGAGTC 59.812 66.667 0.00 0.39 46.51 3.36
564 2670 2.187946 CGGGCTGACCATGAGTCC 59.812 66.667 0.00 3.17 45.68 3.85
565 2671 2.659063 CGGGCTGACCATGAGTCCA 61.659 63.158 0.00 0.00 45.68 4.02
566 2672 1.918253 GGGCTGACCATGAGTCCAT 59.082 57.895 0.00 0.00 45.68 3.41
567 2673 0.465097 GGGCTGACCATGAGTCCATG 60.465 60.000 0.00 0.00 45.68 3.66
758 2871 1.819288 GTTTTAAGCTGGCCCTTCCTC 59.181 52.381 0.00 0.00 35.26 3.71
773 2886 3.359523 CTCGCTTGCCTGCTTGCA 61.360 61.111 0.00 0.00 40.07 4.08
810 2941 1.695114 TACATGCATGGTCCCCCTCG 61.695 60.000 29.41 1.63 0.00 4.63
823 2954 3.827898 CCTCGGCTCCGACCTCAC 61.828 72.222 6.95 0.00 44.01 3.51
824 2955 3.062466 CTCGGCTCCGACCTCACA 61.062 66.667 6.95 0.00 44.01 3.58
825 2956 2.599281 TCGGCTCCGACCTCACAA 60.599 61.111 6.95 0.00 44.01 3.33
900 3035 1.001974 TCCTCACATAGCGCACAAACT 59.998 47.619 11.47 0.00 0.00 2.66
1041 3186 1.507174 CAGGGTCGACTCGTTCTCC 59.493 63.158 16.46 6.07 0.00 3.71
1065 3210 4.473520 CCGTTCATCAGGCCGGCT 62.474 66.667 28.56 9.77 33.20 5.52
1145 3302 3.276091 CAACAACGACGCCCTGCA 61.276 61.111 0.00 0.00 0.00 4.41
1230 3387 4.648626 ACCGTCACGTCCGAGGGA 62.649 66.667 18.35 0.00 42.40 4.20
1716 3885 2.445845 CAGCCCGGGGAGGTGATA 60.446 66.667 25.28 0.00 38.74 2.15
1755 3924 1.227205 GGTGATGAGCCTGCTCTCG 60.227 63.158 19.07 0.00 43.12 4.04
1767 3936 4.847585 CTCTCGTCGTCGCCGTCG 62.848 72.222 0.00 0.00 44.86 5.12
1863 4032 4.168101 TGGACCTCCATTTGTAACTCTCT 58.832 43.478 0.00 0.00 42.01 3.10
1864 4033 4.597507 TGGACCTCCATTTGTAACTCTCTT 59.402 41.667 0.00 0.00 42.01 2.85
1865 4034 5.073144 TGGACCTCCATTTGTAACTCTCTTT 59.927 40.000 0.00 0.00 42.01 2.52
2044 4219 6.662865 TCAAAATGGCTTCCTGTAATTTGA 57.337 33.333 0.00 0.00 34.30 2.69
2045 4220 7.060383 TCAAAATGGCTTCCTGTAATTTGAA 57.940 32.000 0.00 0.00 33.91 2.69
2046 4221 7.678837 TCAAAATGGCTTCCTGTAATTTGAAT 58.321 30.769 0.00 0.00 33.91 2.57
2047 4222 8.156165 TCAAAATGGCTTCCTGTAATTTGAATT 58.844 29.630 0.00 0.00 33.91 2.17
2048 4223 8.785946 CAAAATGGCTTCCTGTAATTTGAATTT 58.214 29.630 0.00 0.00 0.00 1.82
2049 4224 8.922931 AAATGGCTTCCTGTAATTTGAATTTT 57.077 26.923 0.00 0.00 0.00 1.82
2050 4225 7.910441 ATGGCTTCCTGTAATTTGAATTTTG 57.090 32.000 0.00 0.00 0.00 2.44
2051 4226 5.700373 TGGCTTCCTGTAATTTGAATTTTGC 59.300 36.000 0.00 0.00 0.00 3.68
2052 4227 5.700373 GGCTTCCTGTAATTTGAATTTTGCA 59.300 36.000 0.00 0.00 0.00 4.08
2053 4228 6.204495 GGCTTCCTGTAATTTGAATTTTGCAA 59.796 34.615 0.00 0.00 0.00 4.08
2054 4229 7.293018 GCTTCCTGTAATTTGAATTTTGCAAG 58.707 34.615 0.00 0.00 0.00 4.01
2059 4234 8.490355 CCTGTAATTTGAATTTTGCAAGAAGAC 58.510 33.333 0.00 0.00 0.00 3.01
2064 4239 5.759506 TGAATTTTGCAAGAAGACGGTAA 57.240 34.783 0.00 0.00 0.00 2.85
2085 4264 7.992008 GGTAACGATTCCAAAATTTCCATCTA 58.008 34.615 0.00 0.00 0.00 1.98
2090 4269 7.281100 ACGATTCCAAAATTTCCATCTAGACTC 59.719 37.037 0.00 0.00 0.00 3.36
2102 4281 7.609097 TCCATCTAGACTCATTGAGCTTATT 57.391 36.000 13.64 0.00 32.04 1.40
2104 4283 9.319060 TCCATCTAGACTCATTGAGCTTATTAT 57.681 33.333 13.64 0.00 32.04 1.28
2227 4455 7.617041 TCATCATCATACGGTAGATGTAGAG 57.383 40.000 18.49 11.66 41.74 2.43
2417 4645 5.129650 ACTTTCTGGGCTTCCTCTTATAGAC 59.870 44.000 0.00 0.00 0.00 2.59
2518 4749 8.131731 GTGAAGTGAGTTCTTTTTATTTGAGCT 58.868 33.333 1.30 0.00 35.99 4.09
2527 4758 6.443792 TCTTTTTATTTGAGCTTTCGGGAAC 58.556 36.000 0.00 0.00 0.00 3.62
2552 4783 3.057315 CGGGCAGAATGTTTGTTCTCATT 60.057 43.478 0.00 0.00 36.33 2.57
2553 4784 4.240096 GGGCAGAATGTTTGTTCTCATTG 58.760 43.478 0.00 0.00 36.33 2.82
2561 4792 8.509690 AGAATGTTTGTTCTCATTGATGTACTG 58.490 33.333 0.00 0.00 33.24 2.74
2562 4793 7.750229 ATGTTTGTTCTCATTGATGTACTGT 57.250 32.000 0.00 0.00 0.00 3.55
2563 4794 8.846943 ATGTTTGTTCTCATTGATGTACTGTA 57.153 30.769 0.00 0.00 0.00 2.74
2564 4795 8.083462 TGTTTGTTCTCATTGATGTACTGTAC 57.917 34.615 10.98 10.98 0.00 2.90
2565 4796 6.944557 TTGTTCTCATTGATGTACTGTACG 57.055 37.500 12.87 0.00 0.00 3.67
2566 4797 6.262193 TGTTCTCATTGATGTACTGTACGA 57.738 37.500 12.87 3.48 0.00 3.43
2567 4798 6.322491 TGTTCTCATTGATGTACTGTACGAG 58.678 40.000 12.87 11.38 0.00 4.18
2568 4799 4.921547 TCTCATTGATGTACTGTACGAGC 58.078 43.478 12.87 6.18 0.00 5.03
2569 4800 4.398044 TCTCATTGATGTACTGTACGAGCA 59.602 41.667 12.87 8.43 0.00 4.26
2570 4801 4.421058 TCATTGATGTACTGTACGAGCAC 58.579 43.478 12.87 3.83 0.00 4.40
2571 4802 3.926821 TTGATGTACTGTACGAGCACA 57.073 42.857 12.87 6.03 0.00 4.57
2572 4803 4.450082 TTGATGTACTGTACGAGCACAT 57.550 40.909 12.87 9.54 32.70 3.21
2573 4804 5.570234 TTGATGTACTGTACGAGCACATA 57.430 39.130 12.87 0.00 30.25 2.29
2574 4805 5.570234 TGATGTACTGTACGAGCACATAA 57.430 39.130 12.87 2.95 30.25 1.90
2575 4806 5.337554 TGATGTACTGTACGAGCACATAAC 58.662 41.667 12.87 2.88 30.25 1.89
2576 4807 5.124936 TGATGTACTGTACGAGCACATAACT 59.875 40.000 12.87 0.00 30.25 2.24
2577 4808 4.978186 TGTACTGTACGAGCACATAACTC 58.022 43.478 12.87 0.00 0.00 3.01
2586 4817 3.975992 CACATAACTCGTGCTTGCC 57.024 52.632 0.00 0.00 0.00 4.52
2587 4818 1.442769 CACATAACTCGTGCTTGCCT 58.557 50.000 0.00 0.00 0.00 4.75
2588 4819 1.394917 CACATAACTCGTGCTTGCCTC 59.605 52.381 0.00 0.00 0.00 4.70
2589 4820 1.001974 ACATAACTCGTGCTTGCCTCA 59.998 47.619 0.00 0.00 0.00 3.86
2590 4821 2.076100 CATAACTCGTGCTTGCCTCAA 58.924 47.619 0.00 0.00 0.00 3.02
2591 4822 2.472695 TAACTCGTGCTTGCCTCAAT 57.527 45.000 0.00 0.00 0.00 2.57
2592 4823 0.877071 AACTCGTGCTTGCCTCAATG 59.123 50.000 0.00 0.00 0.00 2.82
2593 4824 0.035317 ACTCGTGCTTGCCTCAATGA 59.965 50.000 0.00 0.00 0.00 2.57
2594 4825 1.339438 ACTCGTGCTTGCCTCAATGAT 60.339 47.619 0.00 0.00 0.00 2.45
2595 4826 2.093500 ACTCGTGCTTGCCTCAATGATA 60.093 45.455 0.00 0.00 0.00 2.15
2596 4827 3.136763 CTCGTGCTTGCCTCAATGATAT 58.863 45.455 0.00 0.00 0.00 1.63
2597 4828 3.133691 TCGTGCTTGCCTCAATGATATC 58.866 45.455 0.00 0.00 0.00 1.63
2598 4829 3.136763 CGTGCTTGCCTCAATGATATCT 58.863 45.455 3.98 0.00 0.00 1.98
2599 4830 3.562973 CGTGCTTGCCTCAATGATATCTT 59.437 43.478 3.98 0.00 0.00 2.40
2600 4831 4.036027 CGTGCTTGCCTCAATGATATCTTT 59.964 41.667 3.98 0.85 0.00 2.52
2601 4832 5.279384 GTGCTTGCCTCAATGATATCTTTG 58.721 41.667 20.16 20.16 33.75 2.77
2602 4833 5.066893 GTGCTTGCCTCAATGATATCTTTGA 59.933 40.000 24.65 24.65 37.58 2.69
2603 4834 5.831525 TGCTTGCCTCAATGATATCTTTGAT 59.168 36.000 25.79 1.60 38.68 2.57
2604 4835 6.150318 GCTTGCCTCAATGATATCTTTGATG 58.850 40.000 25.79 23.72 38.68 3.07
2605 4836 6.238953 GCTTGCCTCAATGATATCTTTGATGT 60.239 38.462 25.79 0.00 38.68 3.06
2606 4837 6.628919 TGCCTCAATGATATCTTTGATGTG 57.371 37.500 25.79 19.62 38.68 3.21
2607 4838 5.533528 TGCCTCAATGATATCTTTGATGTGG 59.466 40.000 25.79 23.60 38.68 4.17
2608 4839 5.564259 GCCTCAATGATATCTTTGATGTGGC 60.564 44.000 28.30 28.30 39.38 5.01
2609 4840 5.533528 CCTCAATGATATCTTTGATGTGGCA 59.466 40.000 25.79 9.36 38.68 4.92
2610 4841 6.381481 TCAATGATATCTTTGATGTGGCAC 57.619 37.500 23.27 11.55 35.81 5.01
2611 4842 5.887035 TCAATGATATCTTTGATGTGGCACA 59.113 36.000 24.36 24.36 35.81 4.57
2612 4843 6.377712 TCAATGATATCTTTGATGTGGCACAA 59.622 34.615 25.95 6.10 36.23 3.33
2613 4844 6.971726 ATGATATCTTTGATGTGGCACAAT 57.028 33.333 25.95 14.54 44.16 2.71
2614 4845 6.778834 TGATATCTTTGATGTGGCACAATT 57.221 33.333 25.95 9.26 44.16 2.32
2615 4846 7.172868 TGATATCTTTGATGTGGCACAATTT 57.827 32.000 25.95 8.39 44.16 1.82
2616 4847 7.613585 TGATATCTTTGATGTGGCACAATTTT 58.386 30.769 25.95 7.95 44.16 1.82
2617 4848 8.747471 TGATATCTTTGATGTGGCACAATTTTA 58.253 29.630 25.95 9.27 44.16 1.52
2618 4849 9.754382 GATATCTTTGATGTGGCACAATTTTAT 57.246 29.630 25.95 15.48 44.16 1.40
2620 4851 8.851541 ATCTTTGATGTGGCACAATTTTATTT 57.148 26.923 25.95 4.92 44.16 1.40
2621 4852 9.941325 ATCTTTGATGTGGCACAATTTTATTTA 57.059 25.926 25.95 0.00 44.16 1.40
2622 4853 9.421806 TCTTTGATGTGGCACAATTTTATTTAG 57.578 29.630 25.95 11.78 44.16 1.85
2623 4854 9.206870 CTTTGATGTGGCACAATTTTATTTAGT 57.793 29.630 25.95 2.62 44.16 2.24
2624 4855 9.553064 TTTGATGTGGCACAATTTTATTTAGTT 57.447 25.926 25.95 2.39 44.16 2.24
2625 4856 9.553064 TTGATGTGGCACAATTTTATTTAGTTT 57.447 25.926 25.95 1.88 44.16 2.66
2626 4857 8.986847 TGATGTGGCACAATTTTATTTAGTTTG 58.013 29.630 25.95 0.00 44.16 2.93
2627 4858 7.183580 TGTGGCACAATTTTATTTAGTTTGC 57.816 32.000 19.74 0.00 44.16 3.68
2628 4859 6.074088 TGTGGCACAATTTTATTTAGTTTGCG 60.074 34.615 19.74 0.00 44.16 4.85
2629 4860 6.144724 GTGGCACAATTTTATTTAGTTTGCGA 59.855 34.615 13.86 0.00 44.16 5.10
2630 4861 6.701841 TGGCACAATTTTATTTAGTTTGCGAA 59.298 30.769 0.00 0.00 31.92 4.70
2631 4862 7.224753 TGGCACAATTTTATTTAGTTTGCGAAA 59.775 29.630 0.00 0.00 31.92 3.46
2632 4863 8.064814 GGCACAATTTTATTTAGTTTGCGAAAA 58.935 29.630 0.00 0.00 0.00 2.29
2633 4864 9.091255 GCACAATTTTATTTAGTTTGCGAAAAG 57.909 29.630 0.00 0.00 0.00 2.27
2634 4865 9.579610 CACAATTTTATTTAGTTTGCGAAAAGG 57.420 29.630 0.00 0.00 0.00 3.11
2635 4866 8.279800 ACAATTTTATTTAGTTTGCGAAAAGGC 58.720 29.630 0.00 0.00 0.00 4.35
2636 4867 7.954788 ATTTTATTTAGTTTGCGAAAAGGCA 57.045 28.000 0.00 0.00 42.12 4.75
2637 4868 6.757026 TTTATTTAGTTTGCGAAAAGGCAC 57.243 33.333 0.00 0.00 43.82 5.01
2638 4869 3.784701 TTTAGTTTGCGAAAAGGCACA 57.215 38.095 0.00 0.00 43.82 4.57
2639 4870 3.784701 TTAGTTTGCGAAAAGGCACAA 57.215 38.095 0.00 0.00 43.82 3.33
2640 4871 2.208326 AGTTTGCGAAAAGGCACAAG 57.792 45.000 0.00 0.00 43.82 3.16
2641 4872 1.202405 AGTTTGCGAAAAGGCACAAGG 60.202 47.619 0.00 0.00 43.82 3.61
2642 4873 0.529555 TTTGCGAAAAGGCACAAGGC 60.530 50.000 0.00 0.00 43.82 4.35
2653 4884 2.442413 GGCACAAGGCTAAATACACCA 58.558 47.619 0.00 0.00 44.01 4.17
2654 4885 3.023832 GGCACAAGGCTAAATACACCAT 58.976 45.455 0.00 0.00 44.01 3.55
2655 4886 3.066760 GGCACAAGGCTAAATACACCATC 59.933 47.826 0.00 0.00 44.01 3.51
2656 4887 3.066760 GCACAAGGCTAAATACACCATCC 59.933 47.826 0.00 0.00 40.25 3.51
2657 4888 3.312421 CACAAGGCTAAATACACCATCCG 59.688 47.826 0.00 0.00 0.00 4.18
2658 4889 3.054655 ACAAGGCTAAATACACCATCCGT 60.055 43.478 0.00 0.00 0.00 4.69
2659 4890 3.470645 AGGCTAAATACACCATCCGTC 57.529 47.619 0.00 0.00 0.00 4.79
2660 4891 2.104281 AGGCTAAATACACCATCCGTCC 59.896 50.000 0.00 0.00 0.00 4.79
2661 4892 2.158871 GGCTAAATACACCATCCGTCCA 60.159 50.000 0.00 0.00 0.00 4.02
2662 4893 3.496160 GGCTAAATACACCATCCGTCCAT 60.496 47.826 0.00 0.00 0.00 3.41
2663 4894 3.498397 GCTAAATACACCATCCGTCCATG 59.502 47.826 0.00 0.00 0.00 3.66
2664 4895 3.924114 AAATACACCATCCGTCCATGA 57.076 42.857 0.00 0.00 0.00 3.07
2665 4896 3.475566 AATACACCATCCGTCCATGAG 57.524 47.619 0.00 0.00 0.00 2.90
2666 4897 1.860641 TACACCATCCGTCCATGAGT 58.139 50.000 0.00 0.00 0.00 3.41
2667 4898 1.860641 ACACCATCCGTCCATGAGTA 58.139 50.000 0.00 0.00 0.00 2.59
2668 4899 2.184533 ACACCATCCGTCCATGAGTAA 58.815 47.619 0.00 0.00 0.00 2.24
2669 4900 2.168521 ACACCATCCGTCCATGAGTAAG 59.831 50.000 0.00 0.00 0.00 2.34
2670 4901 2.168521 CACCATCCGTCCATGAGTAAGT 59.831 50.000 0.00 0.00 0.00 2.24
2671 4902 2.168521 ACCATCCGTCCATGAGTAAGTG 59.831 50.000 0.00 0.00 0.00 3.16
2672 4903 2.168521 CCATCCGTCCATGAGTAAGTGT 59.831 50.000 0.00 0.00 0.00 3.55
2673 4904 3.383505 CCATCCGTCCATGAGTAAGTGTA 59.616 47.826 0.00 0.00 0.00 2.90
2674 4905 4.360563 CATCCGTCCATGAGTAAGTGTAC 58.639 47.826 0.00 0.00 0.00 2.90
2675 4906 2.421073 TCCGTCCATGAGTAAGTGTACG 59.579 50.000 0.00 0.00 35.20 3.67
2676 4907 2.163010 CCGTCCATGAGTAAGTGTACGT 59.837 50.000 0.00 0.00 35.20 3.57
2677 4908 3.366679 CCGTCCATGAGTAAGTGTACGTT 60.367 47.826 0.00 0.00 35.20 3.99
2678 4909 4.232221 CGTCCATGAGTAAGTGTACGTTT 58.768 43.478 0.00 0.00 35.20 3.60
2679 4910 4.089493 CGTCCATGAGTAAGTGTACGTTTG 59.911 45.833 0.00 0.00 35.20 2.93
2680 4911 5.224888 GTCCATGAGTAAGTGTACGTTTGA 58.775 41.667 0.00 0.00 35.20 2.69
2681 4912 5.118203 GTCCATGAGTAAGTGTACGTTTGAC 59.882 44.000 0.00 0.00 35.20 3.18
2682 4913 4.986034 CCATGAGTAAGTGTACGTTTGACA 59.014 41.667 0.00 0.00 35.20 3.58
2683 4914 5.637810 CCATGAGTAAGTGTACGTTTGACAT 59.362 40.000 0.00 0.00 35.20 3.06
2684 4915 6.147164 CCATGAGTAAGTGTACGTTTGACATT 59.853 38.462 0.00 0.00 35.20 2.71
2685 4916 7.329962 CCATGAGTAAGTGTACGTTTGACATTA 59.670 37.037 0.00 0.00 35.20 1.90
2686 4917 8.705134 CATGAGTAAGTGTACGTTTGACATTAA 58.295 33.333 0.00 0.00 35.20 1.40
2687 4918 8.645730 TGAGTAAGTGTACGTTTGACATTAAA 57.354 30.769 0.00 0.00 35.20 1.52
2688 4919 9.096160 TGAGTAAGTGTACGTTTGACATTAAAA 57.904 29.630 0.00 0.00 35.20 1.52
2689 4920 9.919348 GAGTAAGTGTACGTTTGACATTAAAAA 57.081 29.630 0.00 0.00 35.20 1.94
2714 4945 7.967890 AATTCCACAAAAATGTCATCTTTCC 57.032 32.000 0.00 0.00 0.00 3.13
2715 4946 6.477053 TTCCACAAAAATGTCATCTTTCCA 57.523 33.333 0.00 0.00 0.00 3.53
2716 4947 6.477053 TCCACAAAAATGTCATCTTTCCAA 57.523 33.333 0.00 0.00 0.00 3.53
2717 4948 7.065120 TCCACAAAAATGTCATCTTTCCAAT 57.935 32.000 0.00 0.00 0.00 3.16
2718 4949 7.507829 TCCACAAAAATGTCATCTTTCCAATT 58.492 30.769 0.00 0.00 0.00 2.32
2719 4950 8.646004 TCCACAAAAATGTCATCTTTCCAATTA 58.354 29.630 0.00 0.00 0.00 1.40
2720 4951 9.439500 CCACAAAAATGTCATCTTTCCAATTAT 57.561 29.630 0.00 0.00 0.00 1.28
2782 5013 6.951062 TCAAGACCAATAACATTCAACACA 57.049 33.333 0.00 0.00 0.00 3.72
2783 5014 6.969366 TCAAGACCAATAACATTCAACACAG 58.031 36.000 0.00 0.00 0.00 3.66
2784 5015 5.964958 AGACCAATAACATTCAACACAGG 57.035 39.130 0.00 0.00 0.00 4.00
2785 5016 4.766891 AGACCAATAACATTCAACACAGGG 59.233 41.667 0.00 0.00 0.00 4.45
2786 5017 4.479158 ACCAATAACATTCAACACAGGGT 58.521 39.130 0.00 0.00 0.00 4.34
2787 5018 4.522789 ACCAATAACATTCAACACAGGGTC 59.477 41.667 0.00 0.00 0.00 4.46
2788 5019 4.766891 CCAATAACATTCAACACAGGGTCT 59.233 41.667 0.00 0.00 0.00 3.85
2789 5020 5.243730 CCAATAACATTCAACACAGGGTCTT 59.756 40.000 0.00 0.00 0.00 3.01
2790 5021 6.381801 CAATAACATTCAACACAGGGTCTTC 58.618 40.000 0.00 0.00 0.00 2.87
2791 5022 3.864789 ACATTCAACACAGGGTCTTCT 57.135 42.857 0.00 0.00 0.00 2.85
2792 5023 3.744660 ACATTCAACACAGGGTCTTCTC 58.255 45.455 0.00 0.00 0.00 2.87
2793 5024 3.136443 ACATTCAACACAGGGTCTTCTCA 59.864 43.478 0.00 0.00 0.00 3.27
2794 5025 2.910688 TCAACACAGGGTCTTCTCAC 57.089 50.000 0.00 0.00 0.00 3.51
2795 5026 2.398588 TCAACACAGGGTCTTCTCACT 58.601 47.619 0.00 0.00 0.00 3.41
2796 5027 2.771943 TCAACACAGGGTCTTCTCACTT 59.228 45.455 0.00 0.00 0.00 3.16
2797 5028 3.199946 TCAACACAGGGTCTTCTCACTTT 59.800 43.478 0.00 0.00 0.00 2.66
2798 5029 3.933861 ACACAGGGTCTTCTCACTTTT 57.066 42.857 0.00 0.00 0.00 2.27
2799 5030 3.809905 ACACAGGGTCTTCTCACTTTTC 58.190 45.455 0.00 0.00 0.00 2.29
2800 5031 3.199946 ACACAGGGTCTTCTCACTTTTCA 59.800 43.478 0.00 0.00 0.00 2.69
2801 5032 3.561725 CACAGGGTCTTCTCACTTTTCAC 59.438 47.826 0.00 0.00 0.00 3.18
2802 5033 3.199946 ACAGGGTCTTCTCACTTTTCACA 59.800 43.478 0.00 0.00 0.00 3.58
2803 5034 4.141390 ACAGGGTCTTCTCACTTTTCACAT 60.141 41.667 0.00 0.00 0.00 3.21
2804 5035 5.071788 ACAGGGTCTTCTCACTTTTCACATA 59.928 40.000 0.00 0.00 0.00 2.29
2805 5036 5.409826 CAGGGTCTTCTCACTTTTCACATAC 59.590 44.000 0.00 0.00 0.00 2.39
2806 5037 5.071788 AGGGTCTTCTCACTTTTCACATACA 59.928 40.000 0.00 0.00 0.00 2.29
2807 5038 5.179555 GGGTCTTCTCACTTTTCACATACAC 59.820 44.000 0.00 0.00 0.00 2.90
2808 5039 5.992217 GGTCTTCTCACTTTTCACATACACT 59.008 40.000 0.00 0.00 0.00 3.55
2809 5040 6.483640 GGTCTTCTCACTTTTCACATACACTT 59.516 38.462 0.00 0.00 0.00 3.16
2810 5041 7.656137 GGTCTTCTCACTTTTCACATACACTTA 59.344 37.037 0.00 0.00 0.00 2.24
2811 5042 8.704234 GTCTTCTCACTTTTCACATACACTTAG 58.296 37.037 0.00 0.00 0.00 2.18
2812 5043 7.385205 TCTTCTCACTTTTCACATACACTTAGC 59.615 37.037 0.00 0.00 0.00 3.09
2813 5044 6.521162 TCTCACTTTTCACATACACTTAGCA 58.479 36.000 0.00 0.00 0.00 3.49
2814 5045 6.423905 TCTCACTTTTCACATACACTTAGCAC 59.576 38.462 0.00 0.00 0.00 4.40
2815 5046 6.052360 TCACTTTTCACATACACTTAGCACA 58.948 36.000 0.00 0.00 0.00 4.57
2816 5047 6.710295 TCACTTTTCACATACACTTAGCACAT 59.290 34.615 0.00 0.00 0.00 3.21
2817 5048 6.798476 CACTTTTCACATACACTTAGCACATG 59.202 38.462 0.00 0.00 0.00 3.21
2818 5049 6.710295 ACTTTTCACATACACTTAGCACATGA 59.290 34.615 0.00 0.00 0.00 3.07
2819 5050 6.726258 TTTCACATACACTTAGCACATGAG 57.274 37.500 0.00 0.00 0.00 2.90
2820 5051 5.405935 TCACATACACTTAGCACATGAGT 57.594 39.130 0.00 0.00 0.00 3.41
2822 5053 4.330894 CACATACACTTAGCACATGAGTGG 59.669 45.833 14.07 2.02 47.00 4.00
2833 5064 5.283060 GCACATGAGTGGTGTACTTAAAG 57.717 43.478 0.00 0.00 45.98 1.85
2834 5065 4.994852 GCACATGAGTGGTGTACTTAAAGA 59.005 41.667 0.00 0.00 45.98 2.52
2835 5066 5.120830 GCACATGAGTGGTGTACTTAAAGAG 59.879 44.000 0.00 0.00 45.98 2.85
2836 5067 5.639506 CACATGAGTGGTGTACTTAAAGAGG 59.360 44.000 0.00 0.00 40.53 3.69
2837 5068 5.542635 ACATGAGTGGTGTACTTAAAGAGGA 59.457 40.000 0.00 0.00 40.53 3.71
2838 5069 5.723672 TGAGTGGTGTACTTAAAGAGGAG 57.276 43.478 0.00 0.00 40.53 3.69
2839 5070 5.391256 TGAGTGGTGTACTTAAAGAGGAGA 58.609 41.667 0.00 0.00 40.53 3.71
2840 5071 5.477291 TGAGTGGTGTACTTAAAGAGGAGAG 59.523 44.000 0.00 0.00 40.53 3.20
2841 5072 5.395611 AGTGGTGTACTTAAAGAGGAGAGT 58.604 41.667 0.00 0.00 35.67 3.24
2842 5073 5.244178 AGTGGTGTACTTAAAGAGGAGAGTG 59.756 44.000 0.00 0.00 35.67 3.51
2843 5074 4.021368 TGGTGTACTTAAAGAGGAGAGTGC 60.021 45.833 0.00 0.00 0.00 4.40
2844 5075 4.221041 GGTGTACTTAAAGAGGAGAGTGCT 59.779 45.833 0.00 0.00 0.00 4.40
2845 5076 5.164954 GTGTACTTAAAGAGGAGAGTGCTG 58.835 45.833 0.00 0.00 0.00 4.41
2846 5077 5.047943 GTGTACTTAAAGAGGAGAGTGCTGA 60.048 44.000 0.00 0.00 0.00 4.26
2847 5078 5.717178 TGTACTTAAAGAGGAGAGTGCTGAT 59.283 40.000 0.00 0.00 0.00 2.90
2848 5079 5.083533 ACTTAAAGAGGAGAGTGCTGATG 57.916 43.478 0.00 0.00 0.00 3.07
2849 5080 4.081198 ACTTAAAGAGGAGAGTGCTGATGG 60.081 45.833 0.00 0.00 0.00 3.51
2850 5081 0.540923 AAGAGGAGAGTGCTGATGGC 59.459 55.000 0.00 0.00 42.22 4.40
2851 5082 0.325484 AGAGGAGAGTGCTGATGGCT 60.325 55.000 0.00 0.00 42.39 4.75
2852 5083 0.540923 GAGGAGAGTGCTGATGGCTT 59.459 55.000 0.00 0.00 42.39 4.35
2853 5084 0.252479 AGGAGAGTGCTGATGGCTTG 59.748 55.000 0.00 0.00 42.39 4.01
2854 5085 1.375098 GGAGAGTGCTGATGGCTTGC 61.375 60.000 0.00 0.00 42.39 4.01
2855 5086 0.675837 GAGAGTGCTGATGGCTTGCA 60.676 55.000 0.00 0.00 42.39 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.074889 TGGCCCTAGGGTTGTTCTTTC 59.925 52.381 28.96 8.66 37.65 2.62
96 97 0.250295 TCCGGACTCCTTGCTTGTTG 60.250 55.000 0.00 0.00 0.00 3.33
159 160 4.778143 CAAAGGGAGACGGGCGGG 62.778 72.222 0.00 0.00 0.00 6.13
160 161 4.778143 CCAAAGGGAGACGGGCGG 62.778 72.222 0.00 0.00 35.59 6.13
205 211 1.621301 CGTAGCTGTCAGTGCAGTGC 61.621 60.000 17.07 8.58 38.65 4.40
206 212 1.010935 CCGTAGCTGTCAGTGCAGTG 61.011 60.000 15.76 15.76 38.65 3.66
207 213 1.179174 TCCGTAGCTGTCAGTGCAGT 61.179 55.000 13.67 0.00 38.65 4.40
208 214 0.174389 ATCCGTAGCTGTCAGTGCAG 59.826 55.000 0.00 9.41 39.37 4.41
209 215 0.173481 GATCCGTAGCTGTCAGTGCA 59.827 55.000 0.00 0.00 0.00 4.57
249 255 4.560128 CTTTCTTTTCTTTTGGGCCTAGC 58.440 43.478 4.53 0.00 0.00 3.42
254 260 6.942532 AATTTCCTTTCTTTTCTTTTGGGC 57.057 33.333 0.00 0.00 0.00 5.36
266 285 2.112511 AGGGGAGGCAAATTTCCTTTCT 59.887 45.455 9.61 6.28 33.24 2.52
271 290 3.602205 ATAGAGGGGAGGCAAATTTCC 57.398 47.619 0.00 0.00 0.00 3.13
366 402 1.607801 GGCAGATTTTGGGACTGGGC 61.608 60.000 0.00 0.00 33.00 5.36
405 447 3.993234 GCTCGATCATGCGTGCCG 61.993 66.667 12.37 12.37 42.82 5.69
436 2542 9.985730 TTTATTTTGAAACGGAGAGAGTAGTTA 57.014 29.630 0.00 0.00 0.00 2.24
438 2544 8.936864 CATTTATTTTGAAACGGAGAGAGTAGT 58.063 33.333 0.00 0.00 0.00 2.73
439 2545 9.151471 TCATTTATTTTGAAACGGAGAGAGTAG 57.849 33.333 0.00 0.00 0.00 2.57
440 2546 8.932791 GTCATTTATTTTGAAACGGAGAGAGTA 58.067 33.333 0.00 0.00 0.00 2.59
441 2547 7.094762 GGTCATTTATTTTGAAACGGAGAGAGT 60.095 37.037 0.00 0.00 0.00 3.24
444 2550 6.072175 TGGGTCATTTATTTTGAAACGGAGAG 60.072 38.462 0.00 0.00 0.00 3.20
445 2551 5.770663 TGGGTCATTTATTTTGAAACGGAGA 59.229 36.000 0.00 0.00 0.00 3.71
447 2553 6.041069 AGTTGGGTCATTTATTTTGAAACGGA 59.959 34.615 0.00 0.00 0.00 4.69
448 2554 6.220201 AGTTGGGTCATTTATTTTGAAACGG 58.780 36.000 0.00 0.00 0.00 4.44
449 2555 7.707774 AAGTTGGGTCATTTATTTTGAAACG 57.292 32.000 0.00 0.00 0.00 3.60
450 2556 8.888716 ACAAAGTTGGGTCATTTATTTTGAAAC 58.111 29.630 0.00 0.00 0.00 2.78
453 2559 9.921637 GATACAAAGTTGGGTCATTTATTTTGA 57.078 29.630 0.00 0.00 0.00 2.69
454 2560 9.703892 TGATACAAAGTTGGGTCATTTATTTTG 57.296 29.630 0.00 0.00 0.00 2.44
461 2567 9.927668 CTAATTTTGATACAAAGTTGGGTCATT 57.072 29.630 12.68 4.47 0.00 2.57
462 2568 9.088987 ACTAATTTTGATACAAAGTTGGGTCAT 57.911 29.630 15.43 0.00 0.00 3.06
463 2569 8.472007 ACTAATTTTGATACAAAGTTGGGTCA 57.528 30.769 15.43 0.00 0.00 4.02
464 2570 9.836076 GTACTAATTTTGATACAAAGTTGGGTC 57.164 33.333 15.43 7.90 0.00 4.46
465 2571 9.357161 TGTACTAATTTTGATACAAAGTTGGGT 57.643 29.630 15.43 13.87 0.00 4.51
474 2580 9.357161 ACCCAACTTTGTACTAATTTTGATACA 57.643 29.630 10.91 0.00 0.00 2.29
475 2581 9.836076 GACCCAACTTTGTACTAATTTTGATAC 57.164 33.333 10.91 0.00 0.00 2.24
476 2582 9.575868 TGACCCAACTTTGTACTAATTTTGATA 57.424 29.630 10.91 0.00 0.00 2.15
477 2583 8.472007 TGACCCAACTTTGTACTAATTTTGAT 57.528 30.769 10.91 2.68 0.00 2.57
478 2584 7.883391 TGACCCAACTTTGTACTAATTTTGA 57.117 32.000 10.91 0.00 0.00 2.69
479 2585 8.576442 AGATGACCCAACTTTGTACTAATTTTG 58.424 33.333 0.00 0.11 0.00 2.44
480 2586 8.706322 AGATGACCCAACTTTGTACTAATTTT 57.294 30.769 0.00 0.00 0.00 1.82
481 2587 9.975218 ATAGATGACCCAACTTTGTACTAATTT 57.025 29.630 0.00 0.00 0.00 1.82
482 2588 9.975218 AATAGATGACCCAACTTTGTACTAATT 57.025 29.630 0.00 0.00 0.00 1.40
483 2589 9.975218 AAATAGATGACCCAACTTTGTACTAAT 57.025 29.630 0.00 0.00 0.00 1.73
484 2590 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
485 2591 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
486 2592 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
487 2593 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
488 2594 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
489 2595 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
490 2596 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
491 2597 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
492 2598 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
493 2599 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
494 2600 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
495 2601 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
496 2602 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
497 2603 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
498 2604 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
499 2605 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
500 2606 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
501 2607 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
502 2608 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
503 2609 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
504 2610 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
505 2611 4.098894 AGTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
506 2612 2.910977 AGTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
507 2613 2.332117 AGTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
508 2614 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
509 2615 2.622452 CCTAGTACTCCCTCCGTTCCAA 60.622 54.545 0.00 0.00 0.00 3.53
510 2616 1.064166 CCTAGTACTCCCTCCGTTCCA 60.064 57.143 0.00 0.00 0.00 3.53
511 2617 1.689984 CCTAGTACTCCCTCCGTTCC 58.310 60.000 0.00 0.00 0.00 3.62
512 2618 1.031235 GCCTAGTACTCCCTCCGTTC 58.969 60.000 0.00 0.00 0.00 3.95
513 2619 0.333993 TGCCTAGTACTCCCTCCGTT 59.666 55.000 0.00 0.00 0.00 4.44
514 2620 0.106619 CTGCCTAGTACTCCCTCCGT 60.107 60.000 0.00 0.00 0.00 4.69
515 2621 0.106619 ACTGCCTAGTACTCCCTCCG 60.107 60.000 0.00 0.00 34.74 4.63
516 2622 2.866351 CTACTGCCTAGTACTCCCTCC 58.134 57.143 0.00 0.00 38.36 4.30
517 2623 2.232399 GCTACTGCCTAGTACTCCCTC 58.768 57.143 0.00 0.00 38.36 4.30
518 2624 2.368311 GCTACTGCCTAGTACTCCCT 57.632 55.000 0.00 0.00 38.36 4.20
561 2667 1.746615 ATGCACGCTGGTCATGGAC 60.747 57.895 0.00 0.00 0.00 4.02
562 2668 1.746239 CATGCACGCTGGTCATGGA 60.746 57.895 0.00 0.00 35.27 3.41
563 2669 2.795973 CATGCACGCTGGTCATGG 59.204 61.111 0.00 0.00 35.27 3.66
564 2670 2.101575 GCATGCACGCTGGTCATG 59.898 61.111 14.21 0.00 40.23 3.07
565 2671 2.360225 TGCATGCACGCTGGTCAT 60.360 55.556 18.46 0.00 0.00 3.06
566 2672 3.051479 CTGCATGCACGCTGGTCA 61.051 61.111 18.46 0.00 0.00 4.02
567 2673 4.471726 GCTGCATGCACGCTGGTC 62.472 66.667 25.36 8.14 42.31 4.02
591 2697 2.170187 AGCTTCCTCAACTATCCTGCAG 59.830 50.000 6.78 6.78 0.00 4.41
592 2698 2.191400 AGCTTCCTCAACTATCCTGCA 58.809 47.619 0.00 0.00 0.00 4.41
765 2878 2.401766 GGTCGGACCATGCAAGCAG 61.402 63.158 22.10 0.00 38.42 4.24
773 2886 3.101437 TGTACATGTAAGGTCGGACCAT 58.899 45.455 27.87 19.35 41.95 3.55
810 2941 1.079750 GAGTTGTGAGGTCGGAGCC 60.080 63.158 3.13 0.00 0.00 4.70
819 2950 1.136141 GCGATGCTTGTGAGTTGTGAG 60.136 52.381 0.00 0.00 0.00 3.51
820 2951 0.867746 GCGATGCTTGTGAGTTGTGA 59.132 50.000 0.00 0.00 0.00 3.58
821 2952 0.451628 CGCGATGCTTGTGAGTTGTG 60.452 55.000 0.00 0.00 0.00 3.33
822 2953 1.862123 CGCGATGCTTGTGAGTTGT 59.138 52.632 0.00 0.00 0.00 3.32
823 2954 1.510623 GCGCGATGCTTGTGAGTTG 60.511 57.895 12.10 0.00 41.73 3.16
824 2955 2.863153 GCGCGATGCTTGTGAGTT 59.137 55.556 12.10 0.00 41.73 3.01
825 2956 3.481903 CGCGCGATGCTTGTGAGT 61.482 61.111 28.94 0.00 43.27 3.41
900 3035 2.736081 GCGTCTCTCGTCTCTCTGTAGA 60.736 54.545 0.00 0.00 42.13 2.59
1041 3186 2.110967 CCTGATGAACGGCAGCTGG 61.111 63.158 17.12 1.57 43.93 4.85
1153 3310 4.760840 CTTGCGCTGCTGCTGCTG 62.761 66.667 25.43 19.76 40.48 4.41
1156 3313 4.760840 CTGCTTGCGCTGCTGCTG 62.761 66.667 22.08 14.28 36.97 4.41
1278 3444 1.009389 GGCACTCGAACTTCCTCGTG 61.009 60.000 0.00 0.00 39.84 4.35
1563 3729 2.124570 ATGGGCTGCGACATGGAC 60.125 61.111 7.52 0.00 0.00 4.02
1700 3869 2.070650 GTTATCACCTCCCCGGGCT 61.071 63.158 17.73 0.00 36.97 5.19
1716 3885 0.035458 CCTTCTCGTCCTTGCAGGTT 59.965 55.000 0.00 0.00 36.53 3.50
1767 3936 1.079750 GGAGGAGCAGGACGACAAC 60.080 63.158 0.00 0.00 0.00 3.32
2044 4219 4.273969 TCGTTACCGTCTTCTTGCAAAATT 59.726 37.500 0.00 0.00 35.01 1.82
2045 4220 3.810941 TCGTTACCGTCTTCTTGCAAAAT 59.189 39.130 0.00 0.00 35.01 1.82
2046 4221 3.196463 TCGTTACCGTCTTCTTGCAAAA 58.804 40.909 0.00 0.00 35.01 2.44
2047 4222 2.823984 TCGTTACCGTCTTCTTGCAAA 58.176 42.857 0.00 0.00 35.01 3.68
2048 4223 2.512485 TCGTTACCGTCTTCTTGCAA 57.488 45.000 0.00 0.00 35.01 4.08
2049 4224 2.736144 ATCGTTACCGTCTTCTTGCA 57.264 45.000 0.00 0.00 35.01 4.08
2050 4225 2.347755 GGAATCGTTACCGTCTTCTTGC 59.652 50.000 0.00 0.00 35.01 4.01
2051 4226 3.581755 TGGAATCGTTACCGTCTTCTTG 58.418 45.455 0.00 0.00 35.01 3.02
2052 4227 3.947910 TGGAATCGTTACCGTCTTCTT 57.052 42.857 0.00 0.00 35.01 2.52
2053 4228 3.947910 TTGGAATCGTTACCGTCTTCT 57.052 42.857 0.00 0.00 35.01 2.85
2054 4229 4.996062 TTTTGGAATCGTTACCGTCTTC 57.004 40.909 0.00 0.00 35.01 2.87
2059 4234 5.049398 TGGAAATTTTGGAATCGTTACCG 57.951 39.130 0.00 0.00 0.00 4.02
2064 4239 7.112779 AGTCTAGATGGAAATTTTGGAATCGT 58.887 34.615 0.00 0.00 0.00 3.73
2066 4241 8.511604 TGAGTCTAGATGGAAATTTTGGAATC 57.488 34.615 0.00 0.00 0.00 2.52
2090 4269 9.252962 GTGGGAAAATTGATAATAAGCTCAATG 57.747 33.333 0.00 0.00 40.33 2.82
2107 4286 9.964303 GCAAATTTTTAATCTTTGTGGGAAAAT 57.036 25.926 0.00 0.00 33.46 1.82
2108 4287 8.960591 TGCAAATTTTTAATCTTTGTGGGAAAA 58.039 25.926 0.00 0.00 33.46 2.29
2109 4288 8.511604 TGCAAATTTTTAATCTTTGTGGGAAA 57.488 26.923 0.00 0.00 33.46 3.13
2110 4289 8.566260 CATGCAAATTTTTAATCTTTGTGGGAA 58.434 29.630 0.00 0.00 33.46 3.97
2111 4290 7.308469 GCATGCAAATTTTTAATCTTTGTGGGA 60.308 33.333 14.21 0.00 33.46 4.37
2128 4307 3.965379 TTGTTGAGATGGCATGCAAAT 57.035 38.095 21.36 12.57 0.00 2.32
2167 4372 5.288472 CGCCAAATTTTTACTACCTTGCATC 59.712 40.000 0.00 0.00 0.00 3.91
2227 4455 1.898574 CAGTGTTGGCCCCACAGAC 60.899 63.158 20.96 5.33 35.24 3.51
2373 4601 0.541392 ACATCGCATACCTGGCTTGA 59.459 50.000 0.00 0.00 0.00 3.02
2431 4659 2.027561 TCTGCCACGGCTAAGTTATTGT 60.028 45.455 9.92 0.00 42.51 2.71
2432 4660 2.627945 TCTGCCACGGCTAAGTTATTG 58.372 47.619 9.92 0.00 42.51 1.90
2443 4671 3.803082 CGTGCCAATCTGCCACGG 61.803 66.667 2.47 0.00 34.45 4.94
2474 4702 9.003658 TCACTTCACTTATTTCCTGATCTTTTC 57.996 33.333 0.00 0.00 0.00 2.29
2492 4723 8.131731 AGCTCAAATAAAAAGAACTCACTTCAC 58.868 33.333 0.00 0.00 0.00 3.18
2510 4741 2.586648 AGGTTCCCGAAAGCTCAAAT 57.413 45.000 0.00 0.00 41.91 2.32
2518 4749 3.243053 TGCCCGAGGTTCCCGAAA 61.243 61.111 0.00 0.00 0.00 3.46
2527 4758 1.200020 GAACAAACATTCTGCCCGAGG 59.800 52.381 0.00 0.00 0.00 4.63
2531 4762 4.022068 TCAATGAGAACAAACATTCTGCCC 60.022 41.667 0.00 0.00 39.08 5.36
2568 4799 1.394917 GAGGCAAGCACGAGTTATGTG 59.605 52.381 0.00 0.00 40.32 3.21
2569 4800 1.001974 TGAGGCAAGCACGAGTTATGT 59.998 47.619 0.00 0.00 0.00 2.29
2570 4801 1.725641 TGAGGCAAGCACGAGTTATG 58.274 50.000 0.00 0.00 0.00 1.90
2571 4802 2.472695 TTGAGGCAAGCACGAGTTAT 57.527 45.000 0.00 0.00 0.00 1.89
2572 4803 2.076100 CATTGAGGCAAGCACGAGTTA 58.924 47.619 0.00 0.00 0.00 2.24
2573 4804 0.877071 CATTGAGGCAAGCACGAGTT 59.123 50.000 0.00 0.00 0.00 3.01
2574 4805 0.035317 TCATTGAGGCAAGCACGAGT 59.965 50.000 0.00 0.00 0.00 4.18
2575 4806 1.376543 ATCATTGAGGCAAGCACGAG 58.623 50.000 0.00 0.00 0.00 4.18
2576 4807 2.689553 TATCATTGAGGCAAGCACGA 57.310 45.000 0.00 0.00 0.00 4.35
2577 4808 3.136763 AGATATCATTGAGGCAAGCACG 58.863 45.455 5.32 0.00 0.00 5.34
2578 4809 5.066893 TCAAAGATATCATTGAGGCAAGCAC 59.933 40.000 17.20 0.00 31.08 4.40
2579 4810 5.195185 TCAAAGATATCATTGAGGCAAGCA 58.805 37.500 17.20 0.00 31.08 3.91
2580 4811 5.762825 TCAAAGATATCATTGAGGCAAGC 57.237 39.130 17.20 0.00 31.08 4.01
2581 4812 7.139392 CACATCAAAGATATCATTGAGGCAAG 58.861 38.462 26.43 16.78 38.43 4.01
2582 4813 6.040054 CCACATCAAAGATATCATTGAGGCAA 59.960 38.462 26.43 7.99 38.43 4.52
2583 4814 5.533528 CCACATCAAAGATATCATTGAGGCA 59.466 40.000 26.43 8.30 38.43 4.75
2584 4815 5.564259 GCCACATCAAAGATATCATTGAGGC 60.564 44.000 26.43 25.44 38.43 4.70
2585 4816 5.533528 TGCCACATCAAAGATATCATTGAGG 59.466 40.000 25.43 25.43 40.01 3.86
2586 4817 6.038936 TGTGCCACATCAAAGATATCATTGAG 59.961 38.462 23.31 18.00 37.06 3.02
2587 4818 5.887035 TGTGCCACATCAAAGATATCATTGA 59.113 36.000 21.86 21.86 37.85 2.57
2588 4819 6.139048 TGTGCCACATCAAAGATATCATTG 57.861 37.500 13.32 13.32 0.00 2.82
2589 4820 6.778834 TTGTGCCACATCAAAGATATCATT 57.221 33.333 5.32 0.00 0.00 2.57
2590 4821 6.971726 ATTGTGCCACATCAAAGATATCAT 57.028 33.333 5.32 0.00 0.00 2.45
2591 4822 6.778834 AATTGTGCCACATCAAAGATATCA 57.221 33.333 5.32 0.00 0.00 2.15
2592 4823 9.754382 ATAAAATTGTGCCACATCAAAGATATC 57.246 29.630 0.00 0.00 0.00 1.63
2594 4825 9.941325 AAATAAAATTGTGCCACATCAAAGATA 57.059 25.926 0.00 0.00 0.00 1.98
2595 4826 8.851541 AAATAAAATTGTGCCACATCAAAGAT 57.148 26.923 0.00 0.00 0.00 2.40
2596 4827 9.421806 CTAAATAAAATTGTGCCACATCAAAGA 57.578 29.630 0.00 0.00 0.00 2.52
2597 4828 9.206870 ACTAAATAAAATTGTGCCACATCAAAG 57.793 29.630 0.00 0.00 0.00 2.77
2598 4829 9.553064 AACTAAATAAAATTGTGCCACATCAAA 57.447 25.926 0.00 0.00 0.00 2.69
2599 4830 9.553064 AAACTAAATAAAATTGTGCCACATCAA 57.447 25.926 0.00 0.00 0.00 2.57
2600 4831 8.986847 CAAACTAAATAAAATTGTGCCACATCA 58.013 29.630 0.00 0.00 0.00 3.07
2601 4832 7.956943 GCAAACTAAATAAAATTGTGCCACATC 59.043 33.333 0.00 0.00 0.00 3.06
2602 4833 7.359933 CGCAAACTAAATAAAATTGTGCCACAT 60.360 33.333 0.00 0.00 0.00 3.21
2603 4834 6.074088 CGCAAACTAAATAAAATTGTGCCACA 60.074 34.615 0.00 0.00 0.00 4.17
2604 4835 6.144724 TCGCAAACTAAATAAAATTGTGCCAC 59.855 34.615 0.00 0.00 32.93 5.01
2605 4836 6.216569 TCGCAAACTAAATAAAATTGTGCCA 58.783 32.000 0.00 0.00 32.93 4.92
2606 4837 6.698359 TCGCAAACTAAATAAAATTGTGCC 57.302 33.333 0.00 0.00 32.93 5.01
2607 4838 8.979817 TTTTCGCAAACTAAATAAAATTGTGC 57.020 26.923 0.00 0.00 32.93 4.57
2608 4839 9.579610 CCTTTTCGCAAACTAAATAAAATTGTG 57.420 29.630 0.00 0.00 33.89 3.33
2609 4840 8.279800 GCCTTTTCGCAAACTAAATAAAATTGT 58.720 29.630 0.00 0.00 0.00 2.71
2610 4841 8.279103 TGCCTTTTCGCAAACTAAATAAAATTG 58.721 29.630 0.00 0.00 35.32 2.32
2611 4842 8.279800 GTGCCTTTTCGCAAACTAAATAAAATT 58.720 29.630 0.00 0.00 41.30 1.82
2612 4843 7.439655 TGTGCCTTTTCGCAAACTAAATAAAAT 59.560 29.630 0.00 0.00 41.30 1.82
2613 4844 6.757010 TGTGCCTTTTCGCAAACTAAATAAAA 59.243 30.769 0.00 0.00 41.30 1.52
2614 4845 6.273825 TGTGCCTTTTCGCAAACTAAATAAA 58.726 32.000 0.00 0.00 41.30 1.40
2615 4846 5.833082 TGTGCCTTTTCGCAAACTAAATAA 58.167 33.333 0.00 0.00 41.30 1.40
2616 4847 5.440234 TGTGCCTTTTCGCAAACTAAATA 57.560 34.783 0.00 0.00 41.30 1.40
2617 4848 4.314740 TGTGCCTTTTCGCAAACTAAAT 57.685 36.364 0.00 0.00 41.30 1.40
2618 4849 3.784701 TGTGCCTTTTCGCAAACTAAA 57.215 38.095 0.00 0.00 41.30 1.85
2619 4850 3.490078 CCTTGTGCCTTTTCGCAAACTAA 60.490 43.478 0.00 0.00 41.30 2.24
2620 4851 2.034053 CCTTGTGCCTTTTCGCAAACTA 59.966 45.455 0.00 0.00 41.30 2.24
2621 4852 1.202405 CCTTGTGCCTTTTCGCAAACT 60.202 47.619 0.00 0.00 41.30 2.66
2622 4853 1.208259 CCTTGTGCCTTTTCGCAAAC 58.792 50.000 0.00 0.00 41.30 2.93
2623 4854 0.529555 GCCTTGTGCCTTTTCGCAAA 60.530 50.000 0.00 0.00 41.30 3.68
2624 4855 1.067250 GCCTTGTGCCTTTTCGCAA 59.933 52.632 0.00 0.00 41.30 4.85
2625 4856 0.536233 TAGCCTTGTGCCTTTTCGCA 60.536 50.000 0.00 0.00 42.71 5.10
2626 4857 0.596082 TTAGCCTTGTGCCTTTTCGC 59.404 50.000 0.00 0.00 42.71 4.70
2627 4858 3.575965 ATTTAGCCTTGTGCCTTTTCG 57.424 42.857 0.00 0.00 42.71 3.46
2628 4859 5.161358 GTGTATTTAGCCTTGTGCCTTTTC 58.839 41.667 0.00 0.00 42.71 2.29
2629 4860 4.021456 GGTGTATTTAGCCTTGTGCCTTTT 60.021 41.667 0.00 0.00 42.71 2.27
2630 4861 3.509967 GGTGTATTTAGCCTTGTGCCTTT 59.490 43.478 0.00 0.00 42.71 3.11
2631 4862 3.089284 GGTGTATTTAGCCTTGTGCCTT 58.911 45.455 0.00 0.00 42.71 4.35
2632 4863 2.041081 TGGTGTATTTAGCCTTGTGCCT 59.959 45.455 0.00 0.00 42.71 4.75
2633 4864 2.442413 TGGTGTATTTAGCCTTGTGCC 58.558 47.619 0.00 0.00 42.71 5.01
2634 4865 3.066760 GGATGGTGTATTTAGCCTTGTGC 59.933 47.826 0.00 0.00 41.71 4.57
2635 4866 3.312421 CGGATGGTGTATTTAGCCTTGTG 59.688 47.826 0.00 0.00 0.00 3.33
2636 4867 3.054655 ACGGATGGTGTATTTAGCCTTGT 60.055 43.478 0.00 0.00 0.00 3.16
2637 4868 3.541632 ACGGATGGTGTATTTAGCCTTG 58.458 45.455 0.00 0.00 0.00 3.61
2638 4869 3.433173 GGACGGATGGTGTATTTAGCCTT 60.433 47.826 0.00 0.00 0.00 4.35
2639 4870 2.104281 GGACGGATGGTGTATTTAGCCT 59.896 50.000 0.00 0.00 0.00 4.58
2640 4871 2.158871 TGGACGGATGGTGTATTTAGCC 60.159 50.000 0.00 0.00 0.00 3.93
2641 4872 3.188159 TGGACGGATGGTGTATTTAGC 57.812 47.619 0.00 0.00 0.00 3.09
2642 4873 4.956085 TCATGGACGGATGGTGTATTTAG 58.044 43.478 0.00 0.00 0.00 1.85
2643 4874 4.407621 ACTCATGGACGGATGGTGTATTTA 59.592 41.667 0.00 0.00 0.00 1.40
2644 4875 3.199946 ACTCATGGACGGATGGTGTATTT 59.800 43.478 0.00 0.00 0.00 1.40
2645 4876 2.771943 ACTCATGGACGGATGGTGTATT 59.228 45.455 0.00 0.00 0.00 1.89
2646 4877 2.398588 ACTCATGGACGGATGGTGTAT 58.601 47.619 0.00 0.00 0.00 2.29
2647 4878 1.860641 ACTCATGGACGGATGGTGTA 58.139 50.000 0.00 0.00 0.00 2.90
2648 4879 1.860641 TACTCATGGACGGATGGTGT 58.139 50.000 0.00 0.00 0.00 4.16
2649 4880 2.168521 ACTTACTCATGGACGGATGGTG 59.831 50.000 0.00 0.00 0.00 4.17
2650 4881 2.168521 CACTTACTCATGGACGGATGGT 59.831 50.000 0.00 0.00 0.00 3.55
2651 4882 2.168521 ACACTTACTCATGGACGGATGG 59.831 50.000 0.00 0.00 0.00 3.51
2652 4883 3.526931 ACACTTACTCATGGACGGATG 57.473 47.619 0.00 0.00 0.00 3.51
2653 4884 4.650754 GTACACTTACTCATGGACGGAT 57.349 45.455 0.00 0.00 0.00 4.18
2657 4888 5.118203 GTCAAACGTACACTTACTCATGGAC 59.882 44.000 0.00 0.00 0.00 4.02
2658 4889 5.221283 TGTCAAACGTACACTTACTCATGGA 60.221 40.000 0.00 0.00 0.00 3.41
2659 4890 4.986034 TGTCAAACGTACACTTACTCATGG 59.014 41.667 0.00 0.00 0.00 3.66
2660 4891 6.706055 ATGTCAAACGTACACTTACTCATG 57.294 37.500 0.00 0.00 0.00 3.07
2661 4892 8.821147 TTAATGTCAAACGTACACTTACTCAT 57.179 30.769 0.00 0.00 0.00 2.90
2662 4893 8.645730 TTTAATGTCAAACGTACACTTACTCA 57.354 30.769 0.00 0.00 0.00 3.41
2663 4894 9.919348 TTTTTAATGTCAAACGTACACTTACTC 57.081 29.630 0.00 0.00 0.00 2.59
2688 4919 8.839343 GGAAAGATGACATTTTTGTGGAATTTT 58.161 29.630 8.57 0.00 0.00 1.82
2689 4920 7.992033 TGGAAAGATGACATTTTTGTGGAATTT 59.008 29.630 8.57 0.00 0.00 1.82
2690 4921 7.507829 TGGAAAGATGACATTTTTGTGGAATT 58.492 30.769 8.57 0.00 0.00 2.17
2691 4922 7.065120 TGGAAAGATGACATTTTTGTGGAAT 57.935 32.000 8.57 0.00 0.00 3.01
2692 4923 6.477053 TGGAAAGATGACATTTTTGTGGAA 57.523 33.333 8.57 0.00 0.00 3.53
2693 4924 6.477053 TTGGAAAGATGACATTTTTGTGGA 57.523 33.333 8.57 0.00 0.00 4.02
2694 4925 7.733402 AATTGGAAAGATGACATTTTTGTGG 57.267 32.000 8.57 0.00 0.00 4.17
2756 4987 9.072375 TGTGTTGAATGTTATTGGTCTTGATTA 57.928 29.630 0.00 0.00 0.00 1.75
2757 4988 7.950512 TGTGTTGAATGTTATTGGTCTTGATT 58.049 30.769 0.00 0.00 0.00 2.57
2758 4989 7.309377 CCTGTGTTGAATGTTATTGGTCTTGAT 60.309 37.037 0.00 0.00 0.00 2.57
2759 4990 6.016360 CCTGTGTTGAATGTTATTGGTCTTGA 60.016 38.462 0.00 0.00 0.00 3.02
2760 4991 6.151691 CCTGTGTTGAATGTTATTGGTCTTG 58.848 40.000 0.00 0.00 0.00 3.02
2761 4992 5.243730 CCCTGTGTTGAATGTTATTGGTCTT 59.756 40.000 0.00 0.00 0.00 3.01
2762 4993 4.766891 CCCTGTGTTGAATGTTATTGGTCT 59.233 41.667 0.00 0.00 0.00 3.85
2763 4994 4.522789 ACCCTGTGTTGAATGTTATTGGTC 59.477 41.667 0.00 0.00 0.00 4.02
2764 4995 4.479158 ACCCTGTGTTGAATGTTATTGGT 58.521 39.130 0.00 0.00 0.00 3.67
2765 4996 4.766891 AGACCCTGTGTTGAATGTTATTGG 59.233 41.667 0.00 0.00 0.00 3.16
2766 4997 5.964958 AGACCCTGTGTTGAATGTTATTG 57.035 39.130 0.00 0.00 0.00 1.90
2767 4998 6.306987 AGAAGACCCTGTGTTGAATGTTATT 58.693 36.000 0.00 0.00 0.00 1.40
2768 4999 5.880901 AGAAGACCCTGTGTTGAATGTTAT 58.119 37.500 0.00 0.00 0.00 1.89
2769 5000 5.163248 TGAGAAGACCCTGTGTTGAATGTTA 60.163 40.000 0.00 0.00 0.00 2.41
2770 5001 4.137543 GAGAAGACCCTGTGTTGAATGTT 58.862 43.478 0.00 0.00 0.00 2.71
2771 5002 3.136443 TGAGAAGACCCTGTGTTGAATGT 59.864 43.478 0.00 0.00 0.00 2.71
2772 5003 3.499918 GTGAGAAGACCCTGTGTTGAATG 59.500 47.826 0.00 0.00 0.00 2.67
2773 5004 3.392616 AGTGAGAAGACCCTGTGTTGAAT 59.607 43.478 0.00 0.00 0.00 2.57
2774 5005 2.771943 AGTGAGAAGACCCTGTGTTGAA 59.228 45.455 0.00 0.00 0.00 2.69
2775 5006 2.398588 AGTGAGAAGACCCTGTGTTGA 58.601 47.619 0.00 0.00 0.00 3.18
2776 5007 2.918712 AGTGAGAAGACCCTGTGTTG 57.081 50.000 0.00 0.00 0.00 3.33
2777 5008 3.933861 AAAGTGAGAAGACCCTGTGTT 57.066 42.857 0.00 0.00 0.00 3.32
2778 5009 3.199946 TGAAAAGTGAGAAGACCCTGTGT 59.800 43.478 0.00 0.00 0.00 3.72
2779 5010 3.561725 GTGAAAAGTGAGAAGACCCTGTG 59.438 47.826 0.00 0.00 0.00 3.66
2780 5011 3.199946 TGTGAAAAGTGAGAAGACCCTGT 59.800 43.478 0.00 0.00 0.00 4.00
2781 5012 3.808728 TGTGAAAAGTGAGAAGACCCTG 58.191 45.455 0.00 0.00 0.00 4.45
2782 5013 4.713792 ATGTGAAAAGTGAGAAGACCCT 57.286 40.909 0.00 0.00 0.00 4.34
2783 5014 5.179555 GTGTATGTGAAAAGTGAGAAGACCC 59.820 44.000 0.00 0.00 0.00 4.46
2784 5015 5.992217 AGTGTATGTGAAAAGTGAGAAGACC 59.008 40.000 0.00 0.00 0.00 3.85
2785 5016 7.484035 AAGTGTATGTGAAAAGTGAGAAGAC 57.516 36.000 0.00 0.00 0.00 3.01
2786 5017 7.385205 GCTAAGTGTATGTGAAAAGTGAGAAGA 59.615 37.037 0.00 0.00 0.00 2.87
2787 5018 7.171508 TGCTAAGTGTATGTGAAAAGTGAGAAG 59.828 37.037 0.00 0.00 0.00 2.85
2788 5019 6.989759 TGCTAAGTGTATGTGAAAAGTGAGAA 59.010 34.615 0.00 0.00 0.00 2.87
2789 5020 6.423905 GTGCTAAGTGTATGTGAAAAGTGAGA 59.576 38.462 0.00 0.00 0.00 3.27
2790 5021 6.202762 TGTGCTAAGTGTATGTGAAAAGTGAG 59.797 38.462 0.00 0.00 0.00 3.51
2791 5022 6.052360 TGTGCTAAGTGTATGTGAAAAGTGA 58.948 36.000 0.00 0.00 0.00 3.41
2792 5023 6.299023 TGTGCTAAGTGTATGTGAAAAGTG 57.701 37.500 0.00 0.00 0.00 3.16
2793 5024 6.710295 TCATGTGCTAAGTGTATGTGAAAAGT 59.290 34.615 0.00 0.00 0.00 2.66
2794 5025 7.095060 ACTCATGTGCTAAGTGTATGTGAAAAG 60.095 37.037 0.00 0.00 0.00 2.27
2795 5026 6.710295 ACTCATGTGCTAAGTGTATGTGAAAA 59.290 34.615 0.00 0.00 0.00 2.29
2796 5027 6.147656 CACTCATGTGCTAAGTGTATGTGAAA 59.852 38.462 3.85 0.00 37.38 2.69
2797 5028 5.639082 CACTCATGTGCTAAGTGTATGTGAA 59.361 40.000 3.85 0.00 37.38 3.18
2798 5029 5.170748 CACTCATGTGCTAAGTGTATGTGA 58.829 41.667 3.85 0.00 37.38 3.58
2799 5030 4.330894 CCACTCATGTGCTAAGTGTATGTG 59.669 45.833 9.80 0.00 42.54 3.21
2800 5031 4.020218 ACCACTCATGTGCTAAGTGTATGT 60.020 41.667 9.80 0.30 42.54 2.29
2801 5032 4.330894 CACCACTCATGTGCTAAGTGTATG 59.669 45.833 9.80 5.21 42.54 2.39
2802 5033 4.020218 ACACCACTCATGTGCTAAGTGTAT 60.020 41.667 9.80 0.00 40.98 2.29
2803 5034 3.323691 ACACCACTCATGTGCTAAGTGTA 59.676 43.478 9.80 0.00 40.98 2.90
2804 5035 2.104792 ACACCACTCATGTGCTAAGTGT 59.895 45.455 9.80 8.21 42.54 3.55
2805 5036 2.771089 ACACCACTCATGTGCTAAGTG 58.229 47.619 4.84 4.84 42.54 3.16
2806 5037 3.578716 AGTACACCACTCATGTGCTAAGT 59.421 43.478 0.00 0.00 40.67 2.24
2807 5038 4.193826 AGTACACCACTCATGTGCTAAG 57.806 45.455 0.00 0.00 40.67 2.18
2808 5039 4.617253 AAGTACACCACTCATGTGCTAA 57.383 40.909 0.00 0.00 41.47 3.09
2809 5040 5.731957 TTAAGTACACCACTCATGTGCTA 57.268 39.130 0.00 0.00 41.47 3.49
2810 5041 4.617253 TTAAGTACACCACTCATGTGCT 57.383 40.909 0.00 0.00 43.79 4.40
2811 5042 4.994852 TCTTTAAGTACACCACTCATGTGC 59.005 41.667 0.00 0.00 42.54 4.57
2812 5043 5.639506 CCTCTTTAAGTACACCACTCATGTG 59.360 44.000 0.00 0.00 43.45 3.21
2813 5044 5.542635 TCCTCTTTAAGTACACCACTCATGT 59.457 40.000 0.00 0.00 36.04 3.21
2814 5045 6.037786 TCCTCTTTAAGTACACCACTCATG 57.962 41.667 0.00 0.00 36.04 3.07
2815 5046 6.017192 TCTCCTCTTTAAGTACACCACTCAT 58.983 40.000 0.00 0.00 36.04 2.90
2816 5047 5.391256 TCTCCTCTTTAAGTACACCACTCA 58.609 41.667 0.00 0.00 36.04 3.41
2817 5048 5.477637 ACTCTCCTCTTTAAGTACACCACTC 59.522 44.000 0.00 0.00 36.04 3.51
2818 5049 5.244178 CACTCTCCTCTTTAAGTACACCACT 59.756 44.000 0.00 0.00 40.05 4.00
2819 5050 5.471257 CACTCTCCTCTTTAAGTACACCAC 58.529 45.833 0.00 0.00 0.00 4.16
2820 5051 4.021368 GCACTCTCCTCTTTAAGTACACCA 60.021 45.833 0.00 0.00 0.00 4.17
2821 5052 4.221041 AGCACTCTCCTCTTTAAGTACACC 59.779 45.833 0.00 0.00 0.00 4.16
2822 5053 5.047943 TCAGCACTCTCCTCTTTAAGTACAC 60.048 44.000 0.00 0.00 0.00 2.90
2823 5054 5.077564 TCAGCACTCTCCTCTTTAAGTACA 58.922 41.667 0.00 0.00 0.00 2.90
2824 5055 5.646577 TCAGCACTCTCCTCTTTAAGTAC 57.353 43.478 0.00 0.00 0.00 2.73
2825 5056 5.127845 CCATCAGCACTCTCCTCTTTAAGTA 59.872 44.000 0.00 0.00 0.00 2.24
2826 5057 4.081198 CCATCAGCACTCTCCTCTTTAAGT 60.081 45.833 0.00 0.00 0.00 2.24
2827 5058 4.440880 CCATCAGCACTCTCCTCTTTAAG 58.559 47.826 0.00 0.00 0.00 1.85
2828 5059 3.369892 GCCATCAGCACTCTCCTCTTTAA 60.370 47.826 0.00 0.00 42.97 1.52
2829 5060 2.169352 GCCATCAGCACTCTCCTCTTTA 59.831 50.000 0.00 0.00 42.97 1.85
2830 5061 1.065564 GCCATCAGCACTCTCCTCTTT 60.066 52.381 0.00 0.00 42.97 2.52
2831 5062 0.540923 GCCATCAGCACTCTCCTCTT 59.459 55.000 0.00 0.00 42.97 2.85
2832 5063 2.210424 GCCATCAGCACTCTCCTCT 58.790 57.895 0.00 0.00 42.97 3.69
2833 5064 4.852962 GCCATCAGCACTCTCCTC 57.147 61.111 0.00 0.00 42.97 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.