Multiple sequence alignment - TraesCS6D01G314300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G314300 chr6D 100.000 3129 0 0 1 3129 422610040 422613168 0.000000e+00 5779.0
1 TraesCS6D01G314300 chr6B 88.828 2730 149 70 438 3125 636877714 636880329 0.000000e+00 3208.0
2 TraesCS6D01G314300 chr6B 85.171 263 27 6 86 342 636877420 636877676 3.100000e-65 259.0
3 TraesCS6D01G314300 chr6A 86.852 1833 92 54 419 2164 565391141 565392911 0.000000e+00 1912.0
4 TraesCS6D01G314300 chr6A 85.714 714 67 15 2134 2840 565393105 565393790 0.000000e+00 721.0
5 TraesCS6D01G314300 chr6A 82.024 751 77 28 2077 2796 565415670 565416393 1.250000e-163 586.0
6 TraesCS6D01G314300 chr7A 90.476 63 5 1 356 417 134616485 134616423 7.190000e-12 82.4
7 TraesCS6D01G314300 chr7A 83.117 77 9 2 351 423 28447081 28447157 2.010000e-07 67.6
8 TraesCS6D01G314300 chr7B 84.524 84 7 4 337 414 18081126 18081209 9.300000e-11 78.7
9 TraesCS6D01G314300 chr7B 85.714 70 10 0 349 418 620597827 620597896 1.200000e-09 75.0
10 TraesCS6D01G314300 chr3B 89.062 64 3 2 354 413 820459927 820459864 3.350000e-10 76.8
11 TraesCS6D01G314300 chr7D 84.615 78 7 3 341 413 236822603 236822680 4.330000e-09 73.1
12 TraesCS6D01G314300 chr2D 85.915 71 5 3 344 413 537496579 537496645 1.560000e-08 71.3
13 TraesCS6D01G314300 chr3D 84.000 75 7 4 347 418 532342024 532341952 2.010000e-07 67.6
14 TraesCS6D01G314300 chr3D 84.000 75 7 4 347 418 532342796 532342724 2.010000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G314300 chr6D 422610040 422613168 3128 False 5779.0 5779 100.0000 1 3129 1 chr6D.!!$F1 3128
1 TraesCS6D01G314300 chr6B 636877420 636880329 2909 False 1733.5 3208 86.9995 86 3125 2 chr6B.!!$F1 3039
2 TraesCS6D01G314300 chr6A 565391141 565393790 2649 False 1316.5 1912 86.2830 419 2840 2 chr6A.!!$F2 2421
3 TraesCS6D01G314300 chr6A 565415670 565416393 723 False 586.0 586 82.0240 2077 2796 1 chr6A.!!$F1 719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
156 157 0.451783 GTTGCTTTGGGGATAGCACG 59.548 55.000 0.0 0.0 46.28 5.34 F
659 667 1.543871 GGTTGCCTTTTCACTCCGGTA 60.544 52.381 0.0 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 1483 0.605589 ACAGAACAGAGGAAGGAGCG 59.394 55.0 0.0 0.0 0.0 5.03 R
2281 2614 0.386476 TAGTGGCGGTTACTATGGCG 59.614 55.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 4.372656 TGTGTGTGTGTGTGATATTTCGA 58.627 39.130 0.00 0.00 0.00 3.71
98 99 4.811557 TGTGTGTGTGTGTGATATTTCGAA 59.188 37.500 0.00 0.00 0.00 3.71
100 101 4.450757 TGTGTGTGTGTGATATTTCGAAGG 59.549 41.667 0.00 0.00 0.00 3.46
102 103 4.250464 GTGTGTGTGATATTTCGAAGGGA 58.750 43.478 0.00 0.00 0.00 4.20
108 109 5.122396 GTGTGATATTTCGAAGGGATATGCC 59.878 44.000 4.83 4.83 0.00 4.40
110 111 5.882557 GTGATATTTCGAAGGGATATGCCAT 59.117 40.000 16.46 2.73 38.95 4.40
113 114 8.106462 TGATATTTCGAAGGGATATGCCATAAA 58.894 33.333 16.46 9.82 38.95 1.40
139 140 4.023193 CCGAGGTAAACTGCTTGAATTGTT 60.023 41.667 0.00 0.00 0.00 2.83
141 142 4.620982 AGGTAAACTGCTTGAATTGTTGC 58.379 39.130 0.00 0.00 0.00 4.17
146 147 3.460103 ACTGCTTGAATTGTTGCTTTGG 58.540 40.909 0.00 0.00 0.00 3.28
149 150 2.224257 GCTTGAATTGTTGCTTTGGGGA 60.224 45.455 0.00 0.00 0.00 4.81
155 156 1.544724 TGTTGCTTTGGGGATAGCAC 58.455 50.000 0.00 0.00 46.28 4.40
156 157 0.451783 GTTGCTTTGGGGATAGCACG 59.548 55.000 0.00 0.00 46.28 5.34
172 174 7.066645 GGGATAGCACGTTTTTCCTTATTTAGT 59.933 37.037 0.00 0.00 0.00 2.24
176 178 7.293018 AGCACGTTTTTCCTTATTTAGTAACG 58.707 34.615 0.00 0.00 41.81 3.18
227 232 5.989477 AGCTGTCAATTGTACTAGGCATAA 58.011 37.500 5.13 0.00 0.00 1.90
228 233 6.051717 AGCTGTCAATTGTACTAGGCATAAG 58.948 40.000 5.13 0.00 0.00 1.73
229 234 5.237344 GCTGTCAATTGTACTAGGCATAAGG 59.763 44.000 5.13 0.00 0.00 2.69
230 235 5.123227 TGTCAATTGTACTAGGCATAAGGC 58.877 41.667 5.13 0.00 43.74 4.35
291 296 7.435068 TTGTATGAAGGTAGAGAAACAAAGC 57.565 36.000 0.00 0.00 0.00 3.51
297 302 3.149981 GGTAGAGAAACAAAGCAAGGCT 58.850 45.455 0.00 0.00 42.56 4.58
314 320 2.556534 GCTACAAGAAGCCAAGCATG 57.443 50.000 0.00 0.00 36.45 4.06
333 339 2.176045 TGCCCGATGAGTCAACTCTTA 58.824 47.619 11.23 0.00 43.25 2.10
334 340 2.166459 TGCCCGATGAGTCAACTCTTAG 59.834 50.000 11.23 5.65 43.25 2.18
336 342 3.119101 GCCCGATGAGTCAACTCTTAGAA 60.119 47.826 11.23 0.00 43.25 2.10
342 348 8.812329 CCGATGAGTCAACTCTTAGAAAATAAG 58.188 37.037 11.23 0.00 43.25 1.73
361 367 9.916360 AAAATAAGAAAATACTATTCCCTCCGT 57.084 29.630 0.00 0.00 0.00 4.69
362 368 9.557061 AAATAAGAAAATACTATTCCCTCCGTC 57.443 33.333 0.00 0.00 0.00 4.79
363 369 5.548181 AGAAAATACTATTCCCTCCGTCC 57.452 43.478 0.00 0.00 0.00 4.79
364 370 4.347292 AGAAAATACTATTCCCTCCGTCCC 59.653 45.833 0.00 0.00 0.00 4.46
365 371 3.339713 AATACTATTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
366 372 3.562108 ATACTATTCCCTCCGTCCCAT 57.438 47.619 0.00 0.00 0.00 4.00
367 373 4.687262 ATACTATTCCCTCCGTCCCATA 57.313 45.455 0.00 0.00 0.00 2.74
368 374 3.339713 ACTATTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
369 375 3.870559 ACTATTCCCTCCGTCCCATAAT 58.129 45.455 0.00 0.00 0.00 1.28
370 376 5.019657 ACTATTCCCTCCGTCCCATAATA 57.980 43.478 0.00 0.00 0.00 0.98
371 377 5.600749 ACTATTCCCTCCGTCCCATAATAT 58.399 41.667 0.00 0.00 0.00 1.28
372 378 6.748969 ACTATTCCCTCCGTCCCATAATATA 58.251 40.000 0.00 0.00 0.00 0.86
373 379 7.194050 ACTATTCCCTCCGTCCCATAATATAA 58.806 38.462 0.00 0.00 0.00 0.98
374 380 6.561519 ATTCCCTCCGTCCCATAATATAAG 57.438 41.667 0.00 0.00 0.00 1.73
375 381 5.279562 TCCCTCCGTCCCATAATATAAGA 57.720 43.478 0.00 0.00 0.00 2.10
376 382 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
377 383 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
378 384 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
379 385 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
380 386 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
381 387 5.711506 TCCGTCCCATAATATAAGAGCGTTA 59.288 40.000 0.00 0.00 0.00 3.18
382 388 6.209192 TCCGTCCCATAATATAAGAGCGTTAA 59.791 38.462 0.00 0.00 0.00 2.01
383 389 6.309737 CCGTCCCATAATATAAGAGCGTTAAC 59.690 42.308 0.00 0.00 0.00 2.01
384 390 6.309737 CGTCCCATAATATAAGAGCGTTAACC 59.690 42.308 0.00 0.00 0.00 2.85
385 391 6.309737 GTCCCATAATATAAGAGCGTTAACCG 59.690 42.308 0.00 0.00 40.40 4.44
402 408 8.912787 CGTTAACCGCTCTTATATTATGAGAT 57.087 34.615 0.00 0.00 33.20 2.75
403 409 8.799091 CGTTAACCGCTCTTATATTATGAGATG 58.201 37.037 0.00 0.00 33.20 2.90
404 410 9.856488 GTTAACCGCTCTTATATTATGAGATGA 57.144 33.333 0.00 0.00 33.20 2.92
406 412 8.994429 AACCGCTCTTATATTATGAGATGAAG 57.006 34.615 0.00 0.00 33.20 3.02
407 413 7.551585 ACCGCTCTTATATTATGAGATGAAGG 58.448 38.462 0.00 3.93 33.20 3.46
408 414 6.983307 CCGCTCTTATATTATGAGATGAAGGG 59.017 42.308 0.00 0.00 33.20 3.95
409 415 7.147828 CCGCTCTTATATTATGAGATGAAGGGA 60.148 40.741 0.00 0.00 33.20 4.20
410 416 7.920151 CGCTCTTATATTATGAGATGAAGGGAG 59.080 40.741 0.00 0.00 33.20 4.30
411 417 8.757877 GCTCTTATATTATGAGATGAAGGGAGT 58.242 37.037 0.00 0.00 33.20 3.85
453 459 1.654105 CGTGAGAATGCGGTTAGTGAC 59.346 52.381 0.00 0.00 0.00 3.67
466 472 4.152402 CGGTTAGTGACTGATTGTGAAAGG 59.848 45.833 0.00 0.00 36.72 3.11
471 477 4.576463 AGTGACTGATTGTGAAAGGAACAC 59.424 41.667 0.00 0.00 38.55 3.32
472 478 4.576463 GTGACTGATTGTGAAAGGAACACT 59.424 41.667 0.00 0.00 38.81 3.55
473 479 4.816385 TGACTGATTGTGAAAGGAACACTC 59.184 41.667 0.00 0.00 38.81 3.51
474 480 4.137543 ACTGATTGTGAAAGGAACACTCC 58.862 43.478 0.00 0.00 42.81 3.85
475 481 4.136796 CTGATTGTGAAAGGAACACTCCA 58.863 43.478 0.00 0.00 45.24 3.86
611 618 3.938963 GGCATTTACCGTCTGATCTTTCA 59.061 43.478 0.00 0.00 0.00 2.69
656 664 1.574428 CGGTTGCCTTTTCACTCCG 59.426 57.895 0.00 0.00 0.00 4.63
657 665 1.852067 CGGTTGCCTTTTCACTCCGG 61.852 60.000 0.00 0.00 33.31 5.14
659 667 1.543871 GGTTGCCTTTTCACTCCGGTA 60.544 52.381 0.00 0.00 0.00 4.02
691 699 5.174579 GGCTGGATTTTAATCGTCGTAGTAC 59.825 44.000 0.00 0.00 36.27 2.73
692 700 5.745294 GCTGGATTTTAATCGTCGTAGTACA 59.255 40.000 0.38 0.00 36.27 2.90
715 741 4.967437 AGACTATGAGTTTCGTCGTACAC 58.033 43.478 0.00 0.00 0.00 2.90
724 752 2.993449 TCGTCGTACACATAGCACAA 57.007 45.000 0.00 0.00 0.00 3.33
750 778 7.831691 TCAAAACTGAATATTTCCTGGTTGA 57.168 32.000 0.00 0.00 0.00 3.18
943 983 2.813908 CTCGCGCACCACCTAACC 60.814 66.667 8.75 0.00 0.00 2.85
948 988 2.434331 GCACCACCTAACCCAGCA 59.566 61.111 0.00 0.00 0.00 4.41
980 1020 2.919228 AGGCGTGCTTAAATAAGGAGG 58.081 47.619 9.23 9.23 40.80 4.30
981 1021 2.504175 AGGCGTGCTTAAATAAGGAGGA 59.496 45.455 15.57 0.00 40.46 3.71
982 1022 2.612672 GGCGTGCTTAAATAAGGAGGAC 59.387 50.000 15.57 10.54 40.46 3.85
983 1023 3.267483 GCGTGCTTAAATAAGGAGGACA 58.733 45.455 15.57 0.00 40.46 4.02
984 1024 3.309954 GCGTGCTTAAATAAGGAGGACAG 59.690 47.826 15.57 0.03 40.46 3.51
1072 1118 4.250305 GTCGCCACCACCACCAGT 62.250 66.667 0.00 0.00 0.00 4.00
1435 1481 3.937706 AGTGATGAATCTTTCTTGCTCCG 59.062 43.478 0.00 0.00 0.00 4.63
1436 1482 3.686726 GTGATGAATCTTTCTTGCTCCGT 59.313 43.478 0.00 0.00 0.00 4.69
1437 1483 3.935203 TGATGAATCTTTCTTGCTCCGTC 59.065 43.478 0.00 0.00 0.00 4.79
1438 1484 2.337583 TGAATCTTTCTTGCTCCGTCG 58.662 47.619 0.00 0.00 0.00 5.12
1439 1485 1.061276 GAATCTTTCTTGCTCCGTCGC 59.939 52.381 0.00 0.00 0.00 5.19
1440 1486 0.247736 ATCTTTCTTGCTCCGTCGCT 59.752 50.000 0.00 0.00 0.00 4.93
1441 1487 0.388649 TCTTTCTTGCTCCGTCGCTC 60.389 55.000 0.00 0.00 0.00 5.03
1442 1488 1.355066 CTTTCTTGCTCCGTCGCTCC 61.355 60.000 0.00 0.00 0.00 4.70
1454 1500 0.892063 GTCGCTCCTTCCTCTGTTCT 59.108 55.000 0.00 0.00 0.00 3.01
1641 1701 2.954868 GCGACTACGGCCACATCG 60.955 66.667 2.24 7.47 40.15 3.84
1818 1878 2.396955 CCAAAGGAGCTGCTCTGCG 61.397 63.158 27.09 13.99 38.29 5.18
1819 1879 2.745492 AAAGGAGCTGCTCTGCGC 60.745 61.111 27.09 12.02 38.29 6.09
1894 1957 3.807538 GCCACACGCATGCCTCAG 61.808 66.667 13.15 0.00 37.47 3.35
1938 2017 7.990055 ACCTTAGCTTAGCCCAAAATATCTAT 58.010 34.615 0.00 0.00 0.00 1.98
2042 2125 6.816640 GCAGCCCAAAATATATCTATGTACGA 59.183 38.462 0.00 0.00 0.00 3.43
2044 2127 7.277981 CAGCCCAAAATATATCTATGTACGACC 59.722 40.741 0.00 0.00 0.00 4.79
2057 2140 3.929094 TGTACGACCAATTCCTTGTACC 58.071 45.455 0.00 0.00 33.12 3.34
2058 2141 3.324268 TGTACGACCAATTCCTTGTACCA 59.676 43.478 0.00 0.00 33.12 3.25
2109 2208 7.094506 GGTGGAATAATTTCAAGTACGGAAACT 60.095 37.037 15.07 9.23 37.10 2.66
2161 2486 5.576563 TTGTTACTCCCTCTGATCCAAAA 57.423 39.130 0.00 0.00 0.00 2.44
2162 2487 5.779241 TGTTACTCCCTCTGATCCAAAAT 57.221 39.130 0.00 0.00 0.00 1.82
2163 2488 6.884472 TGTTACTCCCTCTGATCCAAAATA 57.116 37.500 0.00 0.00 0.00 1.40
2164 2489 7.265599 TGTTACTCCCTCTGATCCAAAATAA 57.734 36.000 0.00 0.00 0.00 1.40
2165 2490 7.695055 TGTTACTCCCTCTGATCCAAAATAAA 58.305 34.615 0.00 0.00 0.00 1.40
2173 2498 7.922811 CCCTCTGATCCAAAATAAAATAAGTGC 59.077 37.037 0.00 0.00 0.00 4.40
2175 2500 8.359875 TCTGATCCAAAATAAAATAAGTGCCA 57.640 30.769 0.00 0.00 0.00 4.92
2228 2554 8.385858 ACTACGAAACTTATTTTAAATCGGAGC 58.614 33.333 14.33 0.00 32.88 4.70
2281 2614 1.812571 ACAAGTCATGTTGGCCGAATC 59.187 47.619 0.00 0.00 40.06 2.52
2322 2655 4.434483 GGGGACGGGCAAAAAGAT 57.566 55.556 0.00 0.00 0.00 2.40
2388 2721 4.632538 AATTTATAAAGCGCGCTTCCTT 57.367 36.364 42.82 30.63 34.84 3.36
2393 2726 2.443957 AAAGCGCGCTTCCTTTCACG 62.444 55.000 42.82 0.00 34.84 4.35
2409 2742 0.095245 CACGATTGTGTGCGATGGAC 59.905 55.000 4.78 0.00 41.34 4.02
2495 2830 9.678260 AATAATTATGAAGACTCTCAGTTTGCT 57.322 29.630 0.00 0.00 0.00 3.91
2597 2952 5.163322 ACAACACAAACCAATCCACATTGAT 60.163 36.000 0.00 0.00 41.97 2.57
2601 2956 4.040706 ACAAACCAATCCACATTGATTGCT 59.959 37.500 7.98 0.00 46.61 3.91
2635 2998 5.068198 TCAGGCATATCTGATTTCCTTTTGC 59.932 40.000 0.00 0.00 38.70 3.68
2637 3000 4.293415 GCATATCTGATTTCCTTTTGCGG 58.707 43.478 0.00 0.00 0.00 5.69
2643 3006 1.269448 GATTTCCTTTTGCGGCTGACA 59.731 47.619 0.00 0.00 0.00 3.58
2826 3190 3.184628 GGTATCCCATCCCTGATGATGA 58.815 50.000 5.67 2.90 43.94 2.92
2830 3194 2.444388 TCCCATCCCTGATGATGAAAGG 59.556 50.000 5.67 0.00 43.94 3.11
2856 3220 9.434559 GGTAAAATATTTTCACGTCTATGCTTC 57.565 33.333 16.56 0.00 0.00 3.86
2894 3258 4.946784 AAACAAGACTGCCATTATCGAC 57.053 40.909 0.00 0.00 0.00 4.20
2896 3260 2.165641 ACAAGACTGCCATTATCGACGA 59.834 45.455 0.00 0.00 0.00 4.20
2898 3262 2.810650 AGACTGCCATTATCGACGAAC 58.189 47.619 0.00 0.00 0.00 3.95
2899 3263 2.165641 AGACTGCCATTATCGACGAACA 59.834 45.455 0.00 0.00 0.00 3.18
2901 3265 2.930040 ACTGCCATTATCGACGAACAAG 59.070 45.455 0.00 0.00 0.00 3.16
2903 3267 1.597663 GCCATTATCGACGAACAAGGG 59.402 52.381 17.21 17.21 0.00 3.95
2904 3268 2.740580 GCCATTATCGACGAACAAGGGA 60.741 50.000 22.77 0.00 0.00 4.20
2905 3269 3.728845 CCATTATCGACGAACAAGGGAT 58.271 45.455 16.79 0.00 0.00 3.85
2906 3270 3.741344 CCATTATCGACGAACAAGGGATC 59.259 47.826 16.79 0.00 0.00 3.36
2907 3271 2.768833 TATCGACGAACAAGGGATCG 57.231 50.000 0.00 0.00 43.96 3.69
2908 3272 1.100510 ATCGACGAACAAGGGATCGA 58.899 50.000 0.00 0.00 45.01 3.59
2913 3281 3.117046 GACGAACAAGGGATCGATTCTC 58.883 50.000 3.13 0.00 41.29 2.87
2920 3288 3.320610 AGGGATCGATTCTCCTCTCAA 57.679 47.619 3.13 0.00 33.05 3.02
2949 3317 2.242926 CGCCTCCATCTCATCTTAGGA 58.757 52.381 0.00 0.00 0.00 2.94
2950 3318 2.230992 CGCCTCCATCTCATCTTAGGAG 59.769 54.545 0.00 0.00 44.26 3.69
2981 3349 5.374071 TCACTCCCTAAAACAAGGTTTCTC 58.626 41.667 0.00 0.00 34.56 2.87
3026 3394 1.834263 CTCCTGAGGACCTTTACCCTG 59.166 57.143 0.00 0.00 31.84 4.45
3037 3405 4.641868 ACCTTTACCCTGATTCTATCCCA 58.358 43.478 0.00 0.00 0.00 4.37
3046 3414 5.104982 CCCTGATTCTATCCCATAGCTTCTC 60.105 48.000 0.00 0.00 32.85 2.87
3065 3433 0.250234 CCCTCTCGATGCACCTTTCA 59.750 55.000 0.00 0.00 0.00 2.69
3084 3452 6.320672 CCTTTCACTGAGCAGGAATTTATGAT 59.679 38.462 2.20 0.00 0.00 2.45
3085 3453 6.688637 TTCACTGAGCAGGAATTTATGATG 57.311 37.500 2.20 0.00 0.00 3.07
3097 3465 8.906867 CAGGAATTTATGATGCTTTCCTCTAAA 58.093 33.333 0.00 0.00 43.27 1.85
3098 3466 8.907885 AGGAATTTATGATGCTTTCCTCTAAAC 58.092 33.333 0.00 0.00 41.79 2.01
3106 3474 2.877335 CTTTCCTCTAAACGAGTCCCG 58.123 52.381 0.00 0.00 45.44 5.14
3125 3493 1.975363 GATGCAAGCTCAGGCACGAC 61.975 60.000 9.49 2.56 43.75 4.34
3126 3494 3.426568 GCAAGCTCAGGCACGACC 61.427 66.667 0.00 0.00 41.70 4.79
3127 3495 3.114616 CAAGCTCAGGCACGACCG 61.115 66.667 0.00 0.00 46.52 4.79
3128 3496 4.379243 AAGCTCAGGCACGACCGG 62.379 66.667 0.00 0.00 46.52 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 8.764287 CGAAATATCACACACACACACATATAT 58.236 33.333 0.00 0.00 0.00 0.86
71 72 7.976734 TCGAAATATCACACACACACACATATA 59.023 33.333 0.00 0.00 0.00 0.86
72 73 6.816140 TCGAAATATCACACACACACACATAT 59.184 34.615 0.00 0.00 0.00 1.78
73 74 6.159988 TCGAAATATCACACACACACACATA 58.840 36.000 0.00 0.00 0.00 2.29
74 75 4.994217 TCGAAATATCACACACACACACAT 59.006 37.500 0.00 0.00 0.00 3.21
75 76 4.372656 TCGAAATATCACACACACACACA 58.627 39.130 0.00 0.00 0.00 3.72
76 77 4.983215 TCGAAATATCACACACACACAC 57.017 40.909 0.00 0.00 0.00 3.82
77 78 4.450757 CCTTCGAAATATCACACACACACA 59.549 41.667 0.00 0.00 0.00 3.72
78 79 4.142902 CCCTTCGAAATATCACACACACAC 60.143 45.833 0.00 0.00 0.00 3.82
79 80 4.000325 CCCTTCGAAATATCACACACACA 59.000 43.478 0.00 0.00 0.00 3.72
80 81 4.250464 TCCCTTCGAAATATCACACACAC 58.750 43.478 0.00 0.00 0.00 3.82
81 82 4.545208 TCCCTTCGAAATATCACACACA 57.455 40.909 0.00 0.00 0.00 3.72
82 83 6.347725 GCATATCCCTTCGAAATATCACACAC 60.348 42.308 0.00 0.00 0.00 3.82
83 84 5.700832 GCATATCCCTTCGAAATATCACACA 59.299 40.000 0.00 0.00 0.00 3.72
84 85 5.122396 GGCATATCCCTTCGAAATATCACAC 59.878 44.000 0.00 0.00 0.00 3.82
90 91 6.884295 CCTTTATGGCATATCCCTTCGAAATA 59.116 38.462 8.24 0.00 0.00 1.40
108 109 2.354821 GCAGTTTACCTCGGCCTTTATG 59.645 50.000 0.00 0.00 0.00 1.90
110 111 1.626825 AGCAGTTTACCTCGGCCTTTA 59.373 47.619 0.00 0.00 0.00 1.85
113 114 0.321653 CAAGCAGTTTACCTCGGCCT 60.322 55.000 0.00 0.00 0.00 5.19
117 118 4.749245 ACAATTCAAGCAGTTTACCTCG 57.251 40.909 0.00 0.00 0.00 4.63
139 140 0.037590 AACGTGCTATCCCCAAAGCA 59.962 50.000 0.00 0.00 46.11 3.91
141 142 3.366985 GGAAAAACGTGCTATCCCCAAAG 60.367 47.826 0.00 0.00 0.00 2.77
146 147 5.830000 AATAAGGAAAAACGTGCTATCCC 57.170 39.130 0.00 0.00 0.00 3.85
155 156 6.834876 AGGCGTTACTAAATAAGGAAAAACG 58.165 36.000 0.00 0.00 31.46 3.60
172 174 5.992829 TGTTTTCTTGTGAGAATAGGCGTTA 59.007 36.000 0.00 0.00 41.35 3.18
174 176 4.385825 TGTTTTCTTGTGAGAATAGGCGT 58.614 39.130 0.00 0.00 41.35 5.68
175 177 5.049405 AGTTGTTTTCTTGTGAGAATAGGCG 60.049 40.000 0.00 0.00 41.35 5.52
176 178 6.319141 AGTTGTTTTCTTGTGAGAATAGGC 57.681 37.500 0.00 0.00 41.35 3.93
206 211 5.237344 GCCTTATGCCTAGTACAATTGACAG 59.763 44.000 13.59 3.20 0.00 3.51
208 213 5.123227 TGCCTTATGCCTAGTACAATTGAC 58.877 41.667 13.59 6.20 40.16 3.18
210 215 5.048504 CCATGCCTTATGCCTAGTACAATTG 60.049 44.000 3.24 3.24 40.16 2.32
211 216 5.072741 CCATGCCTTATGCCTAGTACAATT 58.927 41.667 0.00 0.00 40.16 2.32
227 232 1.836999 TTCTGTACCGCACCATGCCT 61.837 55.000 0.00 0.00 41.12 4.75
228 233 0.958382 TTTCTGTACCGCACCATGCC 60.958 55.000 0.00 0.00 41.12 4.40
229 234 0.878416 TTTTCTGTACCGCACCATGC 59.122 50.000 0.00 0.00 40.69 4.06
230 235 1.136085 CGTTTTCTGTACCGCACCATG 60.136 52.381 0.00 0.00 0.00 3.66
231 236 1.153353 CGTTTTCTGTACCGCACCAT 58.847 50.000 0.00 0.00 0.00 3.55
272 277 4.821805 CCTTGCTTTGTTTCTCTACCTTCA 59.178 41.667 0.00 0.00 0.00 3.02
273 278 4.320567 GCCTTGCTTTGTTTCTCTACCTTC 60.321 45.833 0.00 0.00 0.00 3.46
279 284 3.820557 TGTAGCCTTGCTTTGTTTCTCT 58.179 40.909 0.00 0.00 40.44 3.10
297 302 1.176527 GGCATGCTTGGCTTCTTGTA 58.823 50.000 18.92 0.00 44.68 2.41
314 320 2.427453 TCTAAGAGTTGACTCATCGGGC 59.573 50.000 13.20 0.00 45.21 6.13
336 342 9.557061 GACGGAGGGAATAGTATTTTCTTATTT 57.443 33.333 0.00 0.00 0.00 1.40
342 348 4.102054 TGGGACGGAGGGAATAGTATTTTC 59.898 45.833 0.00 0.00 0.00 2.29
345 351 3.339713 TGGGACGGAGGGAATAGTATT 57.660 47.619 0.00 0.00 0.00 1.89
346 352 3.562108 ATGGGACGGAGGGAATAGTAT 57.438 47.619 0.00 0.00 0.00 2.12
349 355 7.563924 TCTTATATTATGGGACGGAGGGAATAG 59.436 40.741 0.00 0.00 0.00 1.73
350 356 7.424172 TCTTATATTATGGGACGGAGGGAATA 58.576 38.462 0.00 0.00 0.00 1.75
352 358 5.657446 TCTTATATTATGGGACGGAGGGAA 58.343 41.667 0.00 0.00 0.00 3.97
353 359 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
354 360 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
355 361 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
356 362 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
357 363 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
358 364 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
359 365 6.309737 GGTTAACGCTCTTATATTATGGGACG 59.690 42.308 0.00 0.00 0.00 4.79
360 366 6.309737 CGGTTAACGCTCTTATATTATGGGAC 59.690 42.308 0.00 0.00 34.82 4.46
361 367 6.392354 CGGTTAACGCTCTTATATTATGGGA 58.608 40.000 0.00 0.00 34.82 4.37
362 368 6.642683 CGGTTAACGCTCTTATATTATGGG 57.357 41.667 0.00 0.00 34.82 4.00
378 384 9.856488 TCATCTCATAATATAAGAGCGGTTAAC 57.144 33.333 0.00 0.00 0.00 2.01
381 387 8.037758 CCTTCATCTCATAATATAAGAGCGGTT 58.962 37.037 0.00 0.00 0.00 4.44
382 388 7.364232 CCCTTCATCTCATAATATAAGAGCGGT 60.364 40.741 0.00 0.00 0.00 5.68
383 389 6.983307 CCCTTCATCTCATAATATAAGAGCGG 59.017 42.308 0.00 0.00 0.00 5.52
384 390 7.776107 TCCCTTCATCTCATAATATAAGAGCG 58.224 38.462 0.00 0.00 0.00 5.03
385 391 8.757877 ACTCCCTTCATCTCATAATATAAGAGC 58.242 37.037 0.00 0.00 0.00 4.09
392 398 9.607333 ACAATCTACTCCCTTCATCTCATAATA 57.393 33.333 0.00 0.00 0.00 0.98
393 399 8.503428 ACAATCTACTCCCTTCATCTCATAAT 57.497 34.615 0.00 0.00 0.00 1.28
394 400 7.921041 ACAATCTACTCCCTTCATCTCATAA 57.079 36.000 0.00 0.00 0.00 1.90
395 401 9.607333 ATTACAATCTACTCCCTTCATCTCATA 57.393 33.333 0.00 0.00 0.00 2.15
396 402 7.921041 TTACAATCTACTCCCTTCATCTCAT 57.079 36.000 0.00 0.00 0.00 2.90
397 403 7.921041 ATTACAATCTACTCCCTTCATCTCA 57.079 36.000 0.00 0.00 0.00 3.27
398 404 8.032451 GCTATTACAATCTACTCCCTTCATCTC 58.968 40.741 0.00 0.00 0.00 2.75
399 405 7.510685 TGCTATTACAATCTACTCCCTTCATCT 59.489 37.037 0.00 0.00 0.00 2.90
400 406 7.600752 GTGCTATTACAATCTACTCCCTTCATC 59.399 40.741 0.00 0.00 0.00 2.92
401 407 7.071196 TGTGCTATTACAATCTACTCCCTTCAT 59.929 37.037 0.00 0.00 0.00 2.57
402 408 6.382859 TGTGCTATTACAATCTACTCCCTTCA 59.617 38.462 0.00 0.00 0.00 3.02
403 409 6.817184 TGTGCTATTACAATCTACTCCCTTC 58.183 40.000 0.00 0.00 0.00 3.46
404 410 6.808321 TGTGCTATTACAATCTACTCCCTT 57.192 37.500 0.00 0.00 0.00 3.95
405 411 6.554982 TCATGTGCTATTACAATCTACTCCCT 59.445 38.462 0.00 0.00 33.69 4.20
406 412 6.759272 TCATGTGCTATTACAATCTACTCCC 58.241 40.000 0.00 0.00 33.69 4.30
407 413 6.367422 GCTCATGTGCTATTACAATCTACTCC 59.633 42.308 12.42 0.00 33.69 3.85
408 414 6.367422 GGCTCATGTGCTATTACAATCTACTC 59.633 42.308 18.44 0.00 33.69 2.59
409 415 6.226787 GGCTCATGTGCTATTACAATCTACT 58.773 40.000 18.44 0.00 33.69 2.57
410 416 5.119279 CGGCTCATGTGCTATTACAATCTAC 59.881 44.000 18.44 0.00 33.69 2.59
411 417 5.221441 ACGGCTCATGTGCTATTACAATCTA 60.221 40.000 18.44 0.00 33.69 1.98
416 422 2.167487 TCACGGCTCATGTGCTATTACA 59.833 45.455 18.44 0.00 37.26 2.41
417 423 2.797156 CTCACGGCTCATGTGCTATTAC 59.203 50.000 18.44 1.76 37.26 1.89
453 459 4.136796 TGGAGTGTTCCTTTCACAATCAG 58.863 43.478 3.27 0.00 44.36 2.90
521 527 0.953960 GTTTCGGTCGACCCAGCAAT 60.954 55.000 28.52 0.00 0.00 3.56
532 538 2.344025 AGAACTAATGGCGTTTCGGTC 58.656 47.619 0.00 0.00 0.00 4.79
611 618 2.268298 GATTGCATGGTCGTAGTCGTT 58.732 47.619 0.00 0.00 38.33 3.85
657 665 3.675619 AATCCAGCCCCGCGTGTAC 62.676 63.158 4.92 0.00 0.00 2.90
659 667 2.472414 TAAAATCCAGCCCCGCGTGT 62.472 55.000 4.92 0.00 0.00 4.49
691 699 5.283247 GTGTACGACGAAACTCATAGTCTTG 59.717 44.000 0.00 0.00 0.00 3.02
692 700 5.049198 TGTGTACGACGAAACTCATAGTCTT 60.049 40.000 0.00 0.00 0.00 3.01
762 791 9.280174 TCCAGTTCGTTTGTTTCTTATAAGAAT 57.720 29.630 24.84 6.75 43.92 2.40
763 792 8.665643 TCCAGTTCGTTTGTTTCTTATAAGAA 57.334 30.769 21.46 21.46 42.91 2.52
764 793 8.717821 CATCCAGTTCGTTTGTTTCTTATAAGA 58.282 33.333 11.24 11.24 0.00 2.10
765 794 7.962918 CCATCCAGTTCGTTTGTTTCTTATAAG 59.037 37.037 6.11 6.11 0.00 1.73
766 795 7.094549 CCCATCCAGTTCGTTTGTTTCTTATAA 60.095 37.037 0.00 0.00 0.00 0.98
767 796 6.373216 CCCATCCAGTTCGTTTGTTTCTTATA 59.627 38.462 0.00 0.00 0.00 0.98
768 797 5.183140 CCCATCCAGTTCGTTTGTTTCTTAT 59.817 40.000 0.00 0.00 0.00 1.73
769 798 4.517453 CCCATCCAGTTCGTTTGTTTCTTA 59.483 41.667 0.00 0.00 0.00 2.10
781 810 2.401766 CGTGCTGCCCATCCAGTTC 61.402 63.158 0.00 0.00 35.28 3.01
812 843 2.135581 ACGAGGGGAACGTGGTGAA 61.136 57.895 0.00 0.00 42.37 3.18
948 988 2.681778 ACGCCTAGGCAGTGAGCT 60.682 61.111 32.47 7.14 44.79 4.09
980 1020 0.535797 GGTACACACCCTAGGCTGTC 59.464 60.000 6.76 0.00 39.11 3.51
981 1021 0.178915 TGGTACACACCCTAGGCTGT 60.179 55.000 2.05 2.97 45.11 4.40
982 1022 0.537188 CTGGTACACACCCTAGGCTG 59.463 60.000 2.05 2.17 45.11 4.85
983 1023 1.265454 GCTGGTACACACCCTAGGCT 61.265 60.000 2.05 0.00 45.11 4.58
984 1024 1.221021 GCTGGTACACACCCTAGGC 59.779 63.158 2.05 0.00 45.11 3.93
1071 1117 3.446570 GCTGCCATGGTGCTGGAC 61.447 66.667 14.67 0.00 38.69 4.02
1248 1294 4.758251 CTCGCGTCCATGGCCACA 62.758 66.667 8.16 0.00 0.00 4.17
1435 1481 0.892063 AGAACAGAGGAAGGAGCGAC 59.108 55.000 0.00 0.00 0.00 5.19
1436 1482 0.891373 CAGAACAGAGGAAGGAGCGA 59.109 55.000 0.00 0.00 0.00 4.93
1437 1483 0.605589 ACAGAACAGAGGAAGGAGCG 59.394 55.000 0.00 0.00 0.00 5.03
1438 1484 2.614229 GGAACAGAACAGAGGAAGGAGC 60.614 54.545 0.00 0.00 0.00 4.70
1439 1485 2.903135 AGGAACAGAACAGAGGAAGGAG 59.097 50.000 0.00 0.00 0.00 3.69
1440 1486 2.900546 GAGGAACAGAACAGAGGAAGGA 59.099 50.000 0.00 0.00 0.00 3.36
1441 1487 2.903135 AGAGGAACAGAACAGAGGAAGG 59.097 50.000 0.00 0.00 0.00 3.46
1442 1488 4.562552 GGAAGAGGAACAGAACAGAGGAAG 60.563 50.000 0.00 0.00 0.00 3.46
1454 1500 1.271054 GCAAGCAGAGGAAGAGGAACA 60.271 52.381 0.00 0.00 0.00 3.18
1894 1957 3.056465 AGGTAGCTAGTCTGTGAAGTTGC 60.056 47.826 0.00 0.00 0.00 4.17
1922 1994 8.614814 AGGAGCAATAATAGATATTTTGGGCTA 58.385 33.333 0.00 0.00 32.60 3.93
1938 2017 5.932619 TCAACTACTAGCAGGAGCAATAA 57.067 39.130 0.00 0.00 45.49 1.40
2013 2096 7.341805 ACATAGATATATTTTGGGCTGCCTAG 58.658 38.462 19.68 0.00 0.00 3.02
2018 2101 7.277981 GGTCGTACATAGATATATTTTGGGCTG 59.722 40.741 0.00 0.00 0.00 4.85
2020 2103 7.101054 TGGTCGTACATAGATATATTTTGGGC 58.899 38.462 0.00 0.00 0.00 5.36
2042 2125 3.876309 ACACTGGTACAAGGAATTGGT 57.124 42.857 1.45 0.00 38.70 3.67
2044 2127 5.766150 TTCAACACTGGTACAAGGAATTG 57.234 39.130 1.45 3.45 38.70 2.32
2049 2132 5.241506 ACATTCATTCAACACTGGTACAAGG 59.758 40.000 1.45 0.00 38.70 3.61
2057 2140 4.232221 GCAAGGACATTCATTCAACACTG 58.768 43.478 0.00 0.00 0.00 3.66
2058 2141 3.890756 TGCAAGGACATTCATTCAACACT 59.109 39.130 0.00 0.00 0.00 3.55
2130 2229 8.915057 ATCAGAGGGAGTAACAAATATGAATG 57.085 34.615 0.00 0.00 0.00 2.67
2188 2513 7.416154 AGTTTCGTAGTTTCGAATCAATTCA 57.584 32.000 8.83 0.00 46.55 2.57
2228 2554 4.386867 TTTAGACGGAGATTGCTACTGG 57.613 45.455 0.00 0.00 0.00 4.00
2239 2565 8.703604 TTGTTCTAATTCTCATTTAGACGGAG 57.296 34.615 0.00 0.00 35.86 4.63
2281 2614 0.386476 TAGTGGCGGTTACTATGGCG 59.614 55.000 0.00 0.00 0.00 5.69
2311 2644 6.864165 CGACTCTACTAGATATCTTTTTGCCC 59.136 42.308 11.25 0.00 0.00 5.36
2320 2653 6.995511 AAGATGGCGACTCTACTAGATATC 57.004 41.667 0.00 0.00 0.00 1.63
2322 2655 6.824196 CCATAAGATGGCGACTCTACTAGATA 59.176 42.308 0.00 0.00 44.70 1.98
2361 2694 9.326413 AGGAAGCGCGCTTTATAAATTATATAT 57.674 29.630 42.93 18.99 36.26 0.86
2362 2695 8.712285 AGGAAGCGCGCTTTATAAATTATATA 57.288 30.769 42.93 0.00 36.26 0.86
2363 2696 7.611213 AGGAAGCGCGCTTTATAAATTATAT 57.389 32.000 42.93 20.19 36.26 0.86
2364 2697 7.429636 AAGGAAGCGCGCTTTATAAATTATA 57.570 32.000 42.93 0.00 36.26 0.98
2365 2698 5.941948 AGGAAGCGCGCTTTATAAATTAT 57.058 34.783 42.93 20.98 36.26 1.28
2366 2699 5.744666 AAGGAAGCGCGCTTTATAAATTA 57.255 34.783 42.93 0.00 36.26 1.40
2388 2721 0.795698 CCATCGCACACAATCGTGAA 59.204 50.000 0.00 0.00 46.80 3.18
2393 2726 0.729116 CCTGTCCATCGCACACAATC 59.271 55.000 0.00 0.00 0.00 2.67
2438 2773 8.601047 TGTTATCATGGGACCAATTATTTTCA 57.399 30.769 0.00 0.00 0.00 2.69
2444 2779 8.040002 TGTCTATGTTATCATGGGACCAATTA 57.960 34.615 13.91 0.00 37.34 1.40
2487 2822 2.559440 GCCTCTAGGATGAGCAAACTG 58.441 52.381 0.00 0.00 37.39 3.16
2495 2830 3.923273 TTATGGAGGCCTCTAGGATGA 57.077 47.619 31.36 12.65 37.39 2.92
2597 2952 8.192774 CAGATATGCCTGATTTCTTTAAAGCAA 58.807 33.333 10.51 6.54 40.27 3.91
2619 2974 2.165030 CAGCCGCAAAAGGAAATCAGAT 59.835 45.455 0.00 0.00 0.00 2.90
2628 2991 1.165907 TGACTGTCAGCCGCAAAAGG 61.166 55.000 6.36 0.00 0.00 3.11
2629 2992 0.877071 ATGACTGTCAGCCGCAAAAG 59.123 50.000 16.46 0.00 0.00 2.27
2643 3006 2.894126 ACGTTGGAGAGAGACAATGACT 59.106 45.455 0.00 0.00 37.13 3.41
2670 3033 2.291209 AGCACATGACCATTTGTCCA 57.709 45.000 0.00 0.00 43.78 4.02
2687 3050 8.223769 GCTTTAATTTTTCCTCTTTGCTTAAGC 58.776 33.333 20.84 20.84 42.50 3.09
2743 3107 1.627550 GGAAGCCGAGTCGTGAAAGC 61.628 60.000 12.31 7.20 0.00 3.51
2767 3131 8.866970 AATGGCAATCTTATTTTTGTGGAAAT 57.133 26.923 0.00 0.00 33.95 2.17
2830 3194 9.434559 GAAGCATAGACGTGAAAATATTTTACC 57.565 33.333 13.34 6.37 0.00 2.85
2831 3195 9.434559 GGAAGCATAGACGTGAAAATATTTTAC 57.565 33.333 13.34 10.66 0.00 2.01
2876 3240 2.809446 TCGTCGATAATGGCAGTCTTG 58.191 47.619 0.00 0.00 0.00 3.02
2883 3247 1.597663 CCCTTGTTCGTCGATAATGGC 59.402 52.381 0.00 0.00 0.00 4.40
2891 3255 1.852895 GAATCGATCCCTTGTTCGTCG 59.147 52.381 0.00 0.00 35.64 5.12
2894 3258 2.101582 AGGAGAATCGATCCCTTGTTCG 59.898 50.000 0.00 0.00 37.57 3.95
2896 3260 3.379452 AGAGGAGAATCGATCCCTTGTT 58.621 45.455 13.15 3.30 37.57 2.83
2898 3262 2.961741 TGAGAGGAGAATCGATCCCTTG 59.038 50.000 13.15 0.00 37.57 3.61
2899 3263 3.320610 TGAGAGGAGAATCGATCCCTT 57.679 47.619 13.15 5.94 37.57 3.95
2901 3265 4.408182 TTTTGAGAGGAGAATCGATCCC 57.592 45.455 0.00 0.53 37.57 3.85
2903 3267 7.545362 TTTGATTTTGAGAGGAGAATCGATC 57.455 36.000 0.00 0.00 34.37 3.69
2904 3268 7.413438 CGTTTTGATTTTGAGAGGAGAATCGAT 60.413 37.037 0.00 0.00 34.37 3.59
2905 3269 6.128553 CGTTTTGATTTTGAGAGGAGAATCGA 60.129 38.462 0.00 0.00 34.37 3.59
2906 3270 6.017933 CGTTTTGATTTTGAGAGGAGAATCG 58.982 40.000 0.00 0.00 34.37 3.34
2907 3271 5.797434 GCGTTTTGATTTTGAGAGGAGAATC 59.203 40.000 0.00 0.00 0.00 2.52
2908 3272 5.335976 GGCGTTTTGATTTTGAGAGGAGAAT 60.336 40.000 0.00 0.00 0.00 2.40
2913 3281 3.366374 GGAGGCGTTTTGATTTTGAGAGG 60.366 47.826 0.00 0.00 0.00 3.69
2920 3288 3.420893 TGAGATGGAGGCGTTTTGATTT 58.579 40.909 0.00 0.00 0.00 2.17
2949 3317 5.762279 TGTTTTAGGGAGTGAAAGAAACCT 58.238 37.500 0.00 0.00 0.00 3.50
2950 3318 6.459670 TTGTTTTAGGGAGTGAAAGAAACC 57.540 37.500 0.00 0.00 0.00 3.27
2951 3319 6.096423 ACCTTGTTTTAGGGAGTGAAAGAAAC 59.904 38.462 0.00 0.00 39.76 2.78
2952 3320 6.192044 ACCTTGTTTTAGGGAGTGAAAGAAA 58.808 36.000 0.00 0.00 39.76 2.52
2953 3321 5.762279 ACCTTGTTTTAGGGAGTGAAAGAA 58.238 37.500 0.00 0.00 39.76 2.52
3026 3394 5.029474 AGGGAGAAGCTATGGGATAGAATC 58.971 45.833 0.00 0.00 34.77 2.52
3037 3405 1.892474 GCATCGAGAGGGAGAAGCTAT 59.108 52.381 0.00 0.00 0.00 2.97
3046 3414 0.250234 TGAAAGGTGCATCGAGAGGG 59.750 55.000 0.00 0.00 0.00 4.30
3065 3433 4.789807 AGCATCATAAATTCCTGCTCAGT 58.210 39.130 0.00 0.00 38.78 3.41
3097 3465 2.125512 GCTTGCATCGGGACTCGT 60.126 61.111 0.00 0.00 40.32 4.18
3098 3466 1.880340 GAGCTTGCATCGGGACTCG 60.880 63.158 0.00 0.00 40.90 4.18
3106 3474 1.742880 TCGTGCCTGAGCTTGCATC 60.743 57.895 9.33 4.01 40.07 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.