Multiple sequence alignment - TraesCS6D01G314200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G314200 chr6D 100.000 3449 0 0 1 3449 422604103 422607551 0.000000e+00 6370.0
1 TraesCS6D01G314200 chr6B 92.037 2675 137 44 808 3449 636795382 636798013 0.000000e+00 3690.0
2 TraesCS6D01G314200 chr6B 87.815 476 44 8 1 464 636767742 636768215 2.340000e-151 545.0
3 TraesCS6D01G314200 chr6A 92.941 1020 55 15 1667 2672 565344039 565345055 0.000000e+00 1469.0
4 TraesCS6D01G314200 chr6A 92.209 783 36 7 567 1346 565343076 565343836 0.000000e+00 1085.0
5 TraesCS6D01G314200 chr6A 86.914 619 60 18 2675 3285 565345134 565345739 0.000000e+00 675.0
6 TraesCS6D01G314200 chr2D 83.854 192 20 10 3188 3371 117250669 117250857 4.580000e-39 172.0
7 TraesCS6D01G314200 chr7D 84.024 169 12 14 3187 3348 132159528 132159688 7.710000e-32 148.0
8 TraesCS6D01G314200 chr4D 90.196 51 5 0 3098 3148 314635607 314635657 2.220000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G314200 chr6D 422604103 422607551 3448 False 6370.000000 6370 100.000 1 3449 1 chr6D.!!$F1 3448
1 TraesCS6D01G314200 chr6B 636795382 636798013 2631 False 3690.000000 3690 92.037 808 3449 1 chr6B.!!$F2 2641
2 TraesCS6D01G314200 chr6A 565343076 565345739 2663 False 1076.333333 1469 90.688 567 3285 3 chr6A.!!$F1 2718

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 631 0.028902 GAAGTTGTGTGCGTGGGTTC 59.971 55.0 0.0 0.0 0.00 3.62 F
2277 2343 0.512952 AGAGCGAATGCACAAACGTC 59.487 50.0 0.0 0.0 46.23 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2379 2445 1.447489 CTGCTCAAGCTCACTCCCG 60.447 63.158 3.32 0.0 42.66 5.14 R
3372 3540 0.039798 CGGTTGAAGACGAAGACGGA 60.040 55.000 0.00 0.0 44.46 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.081554 AGCGATCCAAACAGCCCT 58.918 55.556 0.00 0.00 0.00 5.19
18 19 2.296920 AGCGATCCAAACAGCCCTA 58.703 52.632 0.00 0.00 0.00 3.53
19 20 0.839946 AGCGATCCAAACAGCCCTAT 59.160 50.000 0.00 0.00 0.00 2.57
20 21 2.047061 AGCGATCCAAACAGCCCTATA 58.953 47.619 0.00 0.00 0.00 1.31
21 22 2.037772 AGCGATCCAAACAGCCCTATAG 59.962 50.000 0.00 0.00 0.00 1.31
22 23 2.224305 GCGATCCAAACAGCCCTATAGT 60.224 50.000 0.00 0.00 0.00 2.12
23 24 3.654414 CGATCCAAACAGCCCTATAGTC 58.346 50.000 0.00 0.00 0.00 2.59
24 25 3.069586 CGATCCAAACAGCCCTATAGTCA 59.930 47.826 0.00 0.00 0.00 3.41
25 26 4.442893 CGATCCAAACAGCCCTATAGTCAA 60.443 45.833 0.00 0.00 0.00 3.18
26 27 4.919774 TCCAAACAGCCCTATAGTCAAA 57.080 40.909 0.00 0.00 0.00 2.69
27 28 4.843728 TCCAAACAGCCCTATAGTCAAAG 58.156 43.478 0.00 0.00 0.00 2.77
28 29 4.288626 TCCAAACAGCCCTATAGTCAAAGT 59.711 41.667 0.00 0.00 0.00 2.66
29 30 4.396166 CCAAACAGCCCTATAGTCAAAGTG 59.604 45.833 0.00 0.00 0.00 3.16
30 31 4.910458 AACAGCCCTATAGTCAAAGTGT 57.090 40.909 0.00 0.00 0.00 3.55
31 32 4.473477 ACAGCCCTATAGTCAAAGTGTC 57.527 45.455 0.00 0.00 0.00 3.67
32 33 3.838317 ACAGCCCTATAGTCAAAGTGTCA 59.162 43.478 0.00 0.00 0.00 3.58
33 34 4.286032 ACAGCCCTATAGTCAAAGTGTCAA 59.714 41.667 0.00 0.00 0.00 3.18
34 35 5.221843 ACAGCCCTATAGTCAAAGTGTCAAA 60.222 40.000 0.00 0.00 0.00 2.69
35 36 5.122396 CAGCCCTATAGTCAAAGTGTCAAAC 59.878 44.000 0.00 0.00 0.00 2.93
36 37 5.013183 AGCCCTATAGTCAAAGTGTCAAACT 59.987 40.000 0.00 0.00 42.60 2.66
37 38 6.212791 AGCCCTATAGTCAAAGTGTCAAACTA 59.787 38.462 0.00 0.00 38.56 2.24
38 39 6.313164 GCCCTATAGTCAAAGTGTCAAACTAC 59.687 42.308 0.00 0.00 38.56 2.73
39 40 7.612677 CCCTATAGTCAAAGTGTCAAACTACT 58.387 38.462 0.00 0.00 38.56 2.57
40 41 8.746530 CCCTATAGTCAAAGTGTCAAACTACTA 58.253 37.037 0.00 0.00 38.56 1.82
44 45 7.304497 AGTCAAAGTGTCAAACTACTATCCT 57.696 36.000 0.00 0.00 38.56 3.24
45 46 7.736893 AGTCAAAGTGTCAAACTACTATCCTT 58.263 34.615 0.00 0.00 38.56 3.36
46 47 8.211629 AGTCAAAGTGTCAAACTACTATCCTTT 58.788 33.333 0.00 0.00 38.56 3.11
47 48 8.837389 GTCAAAGTGTCAAACTACTATCCTTTT 58.163 33.333 0.00 0.00 38.56 2.27
48 49 9.403583 TCAAAGTGTCAAACTACTATCCTTTTT 57.596 29.630 0.00 0.00 38.56 1.94
81 82 9.709600 GCAAACTATCTTTTTCTATAGTGAAGC 57.290 33.333 0.00 0.00 38.58 3.86
158 159 7.807977 TTTTGATCTATTCCACCTAATGCTC 57.192 36.000 0.00 0.00 0.00 4.26
159 160 6.499106 TTGATCTATTCCACCTAATGCTCA 57.501 37.500 0.00 0.00 0.00 4.26
160 161 6.692849 TGATCTATTCCACCTAATGCTCAT 57.307 37.500 0.00 0.00 0.00 2.90
161 162 7.083062 TGATCTATTCCACCTAATGCTCATT 57.917 36.000 0.00 0.49 34.93 2.57
162 163 8.206126 TGATCTATTCCACCTAATGCTCATTA 57.794 34.615 0.00 2.73 32.50 1.90
163 164 8.829746 TGATCTATTCCACCTAATGCTCATTAT 58.170 33.333 3.11 0.00 33.29 1.28
164 165 9.678260 GATCTATTCCACCTAATGCTCATTATT 57.322 33.333 3.11 0.00 33.29 1.40
165 166 9.678260 ATCTATTCCACCTAATGCTCATTATTC 57.322 33.333 3.11 0.00 33.29 1.75
166 167 8.103305 TCTATTCCACCTAATGCTCATTATTCC 58.897 37.037 3.11 0.00 33.29 3.01
167 168 4.985538 TCCACCTAATGCTCATTATTCCC 58.014 43.478 3.11 0.00 33.29 3.97
168 169 4.415179 TCCACCTAATGCTCATTATTCCCA 59.585 41.667 3.11 0.00 33.29 4.37
169 170 5.074929 TCCACCTAATGCTCATTATTCCCAT 59.925 40.000 3.11 0.00 33.29 4.00
170 171 5.776716 CCACCTAATGCTCATTATTCCCATT 59.223 40.000 3.11 0.00 33.29 3.16
171 172 6.268387 CCACCTAATGCTCATTATTCCCATTT 59.732 38.462 3.11 0.00 33.29 2.32
172 173 7.149973 CACCTAATGCTCATTATTCCCATTTG 58.850 38.462 3.11 0.00 33.29 2.32
173 174 7.014518 CACCTAATGCTCATTATTCCCATTTGA 59.985 37.037 3.11 0.00 33.29 2.69
174 175 7.232127 ACCTAATGCTCATTATTCCCATTTGAG 59.768 37.037 3.11 0.00 37.47 3.02
175 176 7.232127 CCTAATGCTCATTATTCCCATTTGAGT 59.768 37.037 3.11 0.00 36.91 3.41
176 177 9.288576 CTAATGCTCATTATTCCCATTTGAGTA 57.711 33.333 3.11 0.00 36.91 2.59
177 178 6.942532 TGCTCATTATTCCCATTTGAGTAC 57.057 37.500 0.00 0.00 36.91 2.73
178 179 6.422333 TGCTCATTATTCCCATTTGAGTACA 58.578 36.000 0.00 0.00 36.91 2.90
179 180 7.062322 TGCTCATTATTCCCATTTGAGTACAT 58.938 34.615 0.00 0.00 36.91 2.29
180 181 8.217111 TGCTCATTATTCCCATTTGAGTACATA 58.783 33.333 0.00 0.00 36.91 2.29
181 182 9.236006 GCTCATTATTCCCATTTGAGTACATAT 57.764 33.333 0.00 0.00 36.91 1.78
205 206 8.882557 ATAAATGAAAATTTGATTTTGGGCCT 57.117 26.923 8.31 0.00 42.15 5.19
206 207 6.578163 AATGAAAATTTGATTTTGGGCCTG 57.422 33.333 4.53 0.00 42.15 4.85
207 208 4.396522 TGAAAATTTGATTTTGGGCCTGG 58.603 39.130 4.53 0.00 42.15 4.45
208 209 2.495155 AATTTGATTTTGGGCCTGGC 57.505 45.000 11.05 11.05 0.00 4.85
209 210 4.066122 AAAATTTGATTTTGGGCCTGGCC 61.066 43.478 29.93 29.93 40.69 5.36
210 211 6.292598 AAAATTTGATTTTGGGCCTGGCCT 62.293 41.667 34.99 17.10 42.06 5.19
220 221 4.486503 CCTGGCCTCAGCTGCTCC 62.487 72.222 9.47 10.15 39.61 4.70
221 222 3.400928 CTGGCCTCAGCTGCTCCT 61.401 66.667 9.47 0.00 39.73 3.69
222 223 3.683966 CTGGCCTCAGCTGCTCCTG 62.684 68.421 9.47 9.66 39.73 3.86
223 224 3.397439 GGCCTCAGCTGCTCCTGA 61.397 66.667 9.47 6.69 39.42 3.86
224 225 2.744243 GGCCTCAGCTGCTCCTGAT 61.744 63.158 9.47 0.00 40.77 2.90
225 226 1.406065 GGCCTCAGCTGCTCCTGATA 61.406 60.000 9.47 0.00 40.77 2.15
226 227 0.686224 GCCTCAGCTGCTCCTGATAT 59.314 55.000 9.47 0.00 40.77 1.63
227 228 1.338011 GCCTCAGCTGCTCCTGATATC 60.338 57.143 9.47 0.00 40.77 1.63
228 229 1.969208 CCTCAGCTGCTCCTGATATCA 59.031 52.381 9.47 5.07 40.77 2.15
229 230 2.367894 CCTCAGCTGCTCCTGATATCAA 59.632 50.000 9.47 0.00 40.77 2.57
230 231 3.391965 CTCAGCTGCTCCTGATATCAAC 58.608 50.000 9.47 0.00 40.77 3.18
231 232 2.767960 TCAGCTGCTCCTGATATCAACA 59.232 45.455 9.47 2.51 36.96 3.33
232 233 3.390311 TCAGCTGCTCCTGATATCAACAT 59.610 43.478 9.47 0.00 36.96 2.71
233 234 3.747010 CAGCTGCTCCTGATATCAACATC 59.253 47.826 6.90 0.00 34.77 3.06
234 235 2.735663 GCTGCTCCTGATATCAACATCG 59.264 50.000 6.90 0.00 0.00 3.84
235 236 3.801638 GCTGCTCCTGATATCAACATCGT 60.802 47.826 6.90 0.00 0.00 3.73
236 237 3.982475 TGCTCCTGATATCAACATCGTC 58.018 45.455 6.90 0.00 0.00 4.20
237 238 3.243873 TGCTCCTGATATCAACATCGTCC 60.244 47.826 6.90 0.00 0.00 4.79
238 239 3.243873 GCTCCTGATATCAACATCGTCCA 60.244 47.826 6.90 0.00 0.00 4.02
239 240 4.554292 CTCCTGATATCAACATCGTCCAG 58.446 47.826 6.90 0.00 0.00 3.86
240 241 3.062763 CCTGATATCAACATCGTCCAGC 58.937 50.000 6.90 0.00 0.00 4.85
241 242 3.062763 CTGATATCAACATCGTCCAGCC 58.937 50.000 6.90 0.00 0.00 4.85
242 243 2.700371 TGATATCAACATCGTCCAGCCT 59.300 45.455 1.98 0.00 0.00 4.58
243 244 2.890808 TATCAACATCGTCCAGCCTC 57.109 50.000 0.00 0.00 0.00 4.70
244 245 0.904649 ATCAACATCGTCCAGCCTCA 59.095 50.000 0.00 0.00 0.00 3.86
245 246 0.904649 TCAACATCGTCCAGCCTCAT 59.095 50.000 0.00 0.00 0.00 2.90
246 247 1.012086 CAACATCGTCCAGCCTCATG 58.988 55.000 0.00 0.00 0.00 3.07
247 248 0.615331 AACATCGTCCAGCCTCATGT 59.385 50.000 0.00 0.00 0.00 3.21
248 249 0.107993 ACATCGTCCAGCCTCATGTG 60.108 55.000 0.00 0.00 0.00 3.21
249 250 0.176449 CATCGTCCAGCCTCATGTGA 59.824 55.000 0.00 0.00 0.00 3.58
250 251 0.904649 ATCGTCCAGCCTCATGTGAA 59.095 50.000 0.00 0.00 0.00 3.18
251 252 0.904649 TCGTCCAGCCTCATGTGAAT 59.095 50.000 0.00 0.00 0.00 2.57
252 253 1.134699 TCGTCCAGCCTCATGTGAATC 60.135 52.381 0.00 0.00 0.00 2.52
253 254 1.673168 GTCCAGCCTCATGTGAATCC 58.327 55.000 0.00 0.00 0.00 3.01
254 255 1.065199 GTCCAGCCTCATGTGAATCCA 60.065 52.381 0.00 0.00 0.00 3.41
255 256 1.065199 TCCAGCCTCATGTGAATCCAC 60.065 52.381 0.00 0.00 43.46 4.02
256 257 1.012086 CAGCCTCATGTGAATCCACG 58.988 55.000 0.00 0.00 46.06 4.94
257 258 0.745845 AGCCTCATGTGAATCCACGC 60.746 55.000 0.00 0.00 46.06 5.34
258 259 2.009108 CCTCATGTGAATCCACGCG 58.991 57.895 3.53 3.53 46.06 6.01
259 260 0.740868 CCTCATGTGAATCCACGCGT 60.741 55.000 5.58 5.58 46.06 6.01
260 261 1.078709 CTCATGTGAATCCACGCGTT 58.921 50.000 10.22 0.00 46.06 4.84
261 262 1.061131 CTCATGTGAATCCACGCGTTC 59.939 52.381 10.22 5.12 46.06 3.95
262 263 1.078709 CATGTGAATCCACGCGTTCT 58.921 50.000 10.22 0.00 46.06 3.01
263 264 1.464608 CATGTGAATCCACGCGTTCTT 59.535 47.619 10.22 2.66 46.06 2.52
264 265 2.442212 TGTGAATCCACGCGTTCTTA 57.558 45.000 10.22 0.00 46.06 2.10
265 266 2.333926 TGTGAATCCACGCGTTCTTAG 58.666 47.619 10.22 0.00 46.06 2.18
266 267 2.288579 TGTGAATCCACGCGTTCTTAGT 60.289 45.455 10.22 0.00 46.06 2.24
267 268 2.344741 GTGAATCCACGCGTTCTTAGTC 59.655 50.000 10.22 4.65 33.10 2.59
268 269 2.029739 TGAATCCACGCGTTCTTAGTCA 60.030 45.455 10.22 7.49 0.00 3.41
269 270 2.961526 ATCCACGCGTTCTTAGTCAT 57.038 45.000 10.22 0.00 0.00 3.06
270 271 4.142337 TGAATCCACGCGTTCTTAGTCATA 60.142 41.667 10.22 0.00 0.00 2.15
271 272 3.416119 TCCACGCGTTCTTAGTCATAG 57.584 47.619 10.22 0.00 0.00 2.23
272 273 1.852895 CCACGCGTTCTTAGTCATAGC 59.147 52.381 10.22 0.00 0.00 2.97
273 274 1.852895 CACGCGTTCTTAGTCATAGCC 59.147 52.381 10.22 0.00 0.00 3.93
274 275 1.121240 CGCGTTCTTAGTCATAGCCG 58.879 55.000 0.00 0.00 0.00 5.52
275 276 1.268386 CGCGTTCTTAGTCATAGCCGA 60.268 52.381 0.00 0.00 0.00 5.54
276 277 2.793585 CGCGTTCTTAGTCATAGCCGAA 60.794 50.000 0.00 0.00 0.00 4.30
277 278 2.789893 GCGTTCTTAGTCATAGCCGAAG 59.210 50.000 0.00 0.00 0.00 3.79
278 279 3.734293 GCGTTCTTAGTCATAGCCGAAGT 60.734 47.826 0.00 0.00 0.00 3.01
279 280 3.791887 CGTTCTTAGTCATAGCCGAAGTG 59.208 47.826 0.00 0.00 0.00 3.16
280 281 4.674623 CGTTCTTAGTCATAGCCGAAGTGT 60.675 45.833 0.00 0.00 0.00 3.55
281 282 5.448225 CGTTCTTAGTCATAGCCGAAGTGTA 60.448 44.000 0.00 0.00 0.00 2.90
282 283 5.752892 TCTTAGTCATAGCCGAAGTGTAG 57.247 43.478 0.00 0.00 0.00 2.74
283 284 2.873133 AGTCATAGCCGAAGTGTAGC 57.127 50.000 0.00 0.00 0.00 3.58
284 285 2.100197 AGTCATAGCCGAAGTGTAGCA 58.900 47.619 0.00 0.00 0.00 3.49
285 286 2.695666 AGTCATAGCCGAAGTGTAGCAT 59.304 45.455 0.00 0.00 0.00 3.79
286 287 3.889538 AGTCATAGCCGAAGTGTAGCATA 59.110 43.478 0.00 0.00 0.00 3.14
287 288 4.341235 AGTCATAGCCGAAGTGTAGCATAA 59.659 41.667 0.00 0.00 0.00 1.90
288 289 5.047847 GTCATAGCCGAAGTGTAGCATAAA 58.952 41.667 0.00 0.00 0.00 1.40
289 290 5.522460 GTCATAGCCGAAGTGTAGCATAAAA 59.478 40.000 0.00 0.00 0.00 1.52
290 291 6.036735 GTCATAGCCGAAGTGTAGCATAAAAA 59.963 38.462 0.00 0.00 0.00 1.94
308 309 2.394930 AAAACAAAGTGGGCCAACAC 57.605 45.000 14.26 8.68 41.63 3.32
318 319 4.857509 GTGGGCCAACACTACATTAAAA 57.142 40.909 8.40 0.00 38.32 1.52
319 320 4.805219 GTGGGCCAACACTACATTAAAAG 58.195 43.478 8.40 0.00 38.32 2.27
320 321 3.257127 TGGGCCAACACTACATTAAAAGC 59.743 43.478 2.13 0.00 0.00 3.51
321 322 3.498082 GGCCAACACTACATTAAAAGCG 58.502 45.455 0.00 0.00 0.00 4.68
322 323 3.498082 GCCAACACTACATTAAAAGCGG 58.502 45.455 0.00 0.00 0.00 5.52
323 324 3.057806 GCCAACACTACATTAAAAGCGGT 60.058 43.478 0.00 0.00 0.00 5.68
324 325 4.154556 GCCAACACTACATTAAAAGCGGTA 59.845 41.667 0.00 0.00 0.00 4.02
325 326 5.672819 GCCAACACTACATTAAAAGCGGTAG 60.673 44.000 0.00 0.00 39.23 3.18
326 327 5.163794 CCAACACTACATTAAAAGCGGTAGG 60.164 44.000 0.00 0.00 37.99 3.18
327 328 3.937079 ACACTACATTAAAAGCGGTAGGC 59.063 43.478 0.00 0.00 37.99 3.93
336 337 4.570663 GCGGTAGGCGCATCTCGT 62.571 66.667 10.83 0.00 41.07 4.18
337 338 2.655364 CGGTAGGCGCATCTCGTG 60.655 66.667 10.83 0.00 41.07 4.35
338 339 2.494918 GGTAGGCGCATCTCGTGT 59.505 61.111 10.83 0.00 41.07 4.49
339 340 1.731700 GGTAGGCGCATCTCGTGTA 59.268 57.895 10.83 0.00 41.07 2.90
340 341 0.317938 GGTAGGCGCATCTCGTGTAG 60.318 60.000 10.83 0.00 41.07 2.74
341 342 0.935366 GTAGGCGCATCTCGTGTAGC 60.935 60.000 10.83 0.00 41.07 3.58
354 355 4.959596 TCGTGTAGCGAGAACTAGAAAT 57.040 40.909 0.00 0.00 45.68 2.17
355 356 5.306532 TCGTGTAGCGAGAACTAGAAATT 57.693 39.130 0.00 0.00 45.68 1.82
356 357 5.706916 TCGTGTAGCGAGAACTAGAAATTT 58.293 37.500 0.00 0.00 45.68 1.82
357 358 6.845302 TCGTGTAGCGAGAACTAGAAATTTA 58.155 36.000 0.00 0.00 45.68 1.40
358 359 6.965500 TCGTGTAGCGAGAACTAGAAATTTAG 59.035 38.462 0.00 0.00 45.68 1.85
359 360 6.291164 CGTGTAGCGAGAACTAGAAATTTAGC 60.291 42.308 0.00 0.00 44.77 3.09
360 361 6.530534 GTGTAGCGAGAACTAGAAATTTAGCA 59.469 38.462 0.00 0.00 0.00 3.49
361 362 7.222999 GTGTAGCGAGAACTAGAAATTTAGCAT 59.777 37.037 0.00 0.00 0.00 3.79
362 363 6.595772 AGCGAGAACTAGAAATTTAGCATG 57.404 37.500 0.00 0.00 0.00 4.06
363 364 5.525378 AGCGAGAACTAGAAATTTAGCATGG 59.475 40.000 0.00 0.00 0.00 3.66
364 365 5.742446 CGAGAACTAGAAATTTAGCATGGC 58.258 41.667 0.00 0.00 0.00 4.40
365 366 5.277538 CGAGAACTAGAAATTTAGCATGGCC 60.278 44.000 0.00 0.00 0.00 5.36
366 367 4.889995 AGAACTAGAAATTTAGCATGGCCC 59.110 41.667 0.00 0.00 0.00 5.80
367 368 3.214328 ACTAGAAATTTAGCATGGCCCG 58.786 45.455 0.00 0.00 0.00 6.13
368 369 1.402787 AGAAATTTAGCATGGCCCGG 58.597 50.000 0.00 0.00 0.00 5.73
369 370 0.389025 GAAATTTAGCATGGCCCGGG 59.611 55.000 19.09 19.09 0.00 5.73
370 371 0.325203 AAATTTAGCATGGCCCGGGT 60.325 50.000 24.63 2.66 0.00 5.28
371 372 1.042559 AATTTAGCATGGCCCGGGTG 61.043 55.000 24.63 14.30 0.00 4.61
372 373 2.223464 ATTTAGCATGGCCCGGGTGT 62.223 55.000 24.63 5.34 0.00 4.16
373 374 1.563577 TTTAGCATGGCCCGGGTGTA 61.564 55.000 24.63 9.31 0.00 2.90
374 375 1.978455 TTAGCATGGCCCGGGTGTAG 61.978 60.000 24.63 11.56 0.00 2.74
375 376 4.109675 GCATGGCCCGGGTGTAGT 62.110 66.667 24.63 0.76 0.00 2.73
376 377 2.189521 CATGGCCCGGGTGTAGTC 59.810 66.667 24.63 3.18 0.00 2.59
377 378 3.087906 ATGGCCCGGGTGTAGTCC 61.088 66.667 24.63 14.34 0.00 3.85
378 379 3.635869 ATGGCCCGGGTGTAGTCCT 62.636 63.158 24.63 0.61 0.00 3.85
379 380 3.782443 GGCCCGGGTGTAGTCCTG 61.782 72.222 24.63 0.00 0.00 3.86
383 384 3.782443 CGGGTGTAGTCCTGGGCC 61.782 72.222 0.00 0.00 0.00 5.80
384 385 2.285442 GGGTGTAGTCCTGGGCCT 60.285 66.667 4.53 0.00 0.00 5.19
385 386 2.670148 GGGTGTAGTCCTGGGCCTG 61.670 68.421 4.53 3.68 0.00 4.85
386 387 2.269241 GTGTAGTCCTGGGCCTGC 59.731 66.667 4.53 0.00 0.00 4.85
387 388 3.009115 TGTAGTCCTGGGCCTGCC 61.009 66.667 4.53 0.00 0.00 4.85
388 389 2.689034 GTAGTCCTGGGCCTGCCT 60.689 66.667 4.53 5.60 36.10 4.75
389 390 2.688666 TAGTCCTGGGCCTGCCTG 60.689 66.667 4.53 1.67 36.10 4.85
390 391 3.252585 TAGTCCTGGGCCTGCCTGA 62.253 63.158 4.53 0.04 36.10 3.86
391 392 4.106925 GTCCTGGGCCTGCCTGAG 62.107 72.222 4.53 4.61 36.10 3.35
409 410 0.804989 AGCCTTCGCTACAATGTTGC 59.195 50.000 9.67 9.67 46.08 4.17
410 411 0.521291 GCCTTCGCTACAATGTTGCA 59.479 50.000 18.64 4.58 34.26 4.08
411 412 1.466360 GCCTTCGCTACAATGTTGCAG 60.466 52.381 18.64 9.76 34.26 4.41
412 413 1.466360 CCTTCGCTACAATGTTGCAGC 60.466 52.381 18.64 8.42 42.71 5.25
413 414 0.521291 TTCGCTACAATGTTGCAGCC 59.479 50.000 18.64 0.00 43.10 4.85
414 415 1.137404 CGCTACAATGTTGCAGCCC 59.863 57.895 18.64 0.00 43.10 5.19
415 416 1.308069 CGCTACAATGTTGCAGCCCT 61.308 55.000 18.64 0.00 43.10 5.19
416 417 1.750193 GCTACAATGTTGCAGCCCTA 58.250 50.000 14.44 0.00 40.80 3.53
417 418 2.091541 GCTACAATGTTGCAGCCCTAA 58.908 47.619 14.44 0.00 40.80 2.69
418 419 2.491693 GCTACAATGTTGCAGCCCTAAA 59.508 45.455 14.44 0.00 40.80 1.85
419 420 3.056891 GCTACAATGTTGCAGCCCTAAAA 60.057 43.478 14.44 0.00 40.80 1.52
420 421 3.665745 ACAATGTTGCAGCCCTAAAAG 57.334 42.857 0.00 0.00 0.00 2.27
421 422 2.289010 ACAATGTTGCAGCCCTAAAAGC 60.289 45.455 0.00 0.00 0.00 3.51
422 423 1.631405 ATGTTGCAGCCCTAAAAGCA 58.369 45.000 0.00 0.00 34.79 3.91
423 424 0.961019 TGTTGCAGCCCTAAAAGCAG 59.039 50.000 0.00 0.00 38.35 4.24
424 425 1.247567 GTTGCAGCCCTAAAAGCAGA 58.752 50.000 0.00 0.00 38.35 4.26
425 426 1.200948 GTTGCAGCCCTAAAAGCAGAG 59.799 52.381 0.00 0.00 38.35 3.35
426 427 0.962356 TGCAGCCCTAAAAGCAGAGC 60.962 55.000 0.00 0.00 32.48 4.09
427 428 1.661498 GCAGCCCTAAAAGCAGAGCC 61.661 60.000 0.00 0.00 0.00 4.70
428 429 1.034292 CAGCCCTAAAAGCAGAGCCC 61.034 60.000 0.00 0.00 0.00 5.19
429 430 1.754621 GCCCTAAAAGCAGAGCCCC 60.755 63.158 0.00 0.00 0.00 5.80
430 431 2.002625 CCCTAAAAGCAGAGCCCCT 58.997 57.895 0.00 0.00 0.00 4.79
431 432 0.332972 CCCTAAAAGCAGAGCCCCTT 59.667 55.000 0.00 0.00 0.00 3.95
432 433 1.272704 CCCTAAAAGCAGAGCCCCTTT 60.273 52.381 0.00 0.00 32.98 3.11
433 434 1.821136 CCTAAAAGCAGAGCCCCTTTG 59.179 52.381 0.00 0.00 32.06 2.77
434 435 1.203287 CTAAAAGCAGAGCCCCTTTGC 59.797 52.381 0.00 0.00 41.12 3.68
435 436 0.760189 AAAAGCAGAGCCCCTTTGCA 60.760 50.000 9.89 0.00 42.88 4.08
436 437 0.543646 AAAGCAGAGCCCCTTTGCAT 60.544 50.000 9.89 0.00 42.88 3.96
437 438 0.969409 AAGCAGAGCCCCTTTGCATC 60.969 55.000 9.89 0.00 42.88 3.91
438 439 1.679977 GCAGAGCCCCTTTGCATCA 60.680 57.895 3.23 0.00 40.62 3.07
439 440 1.041447 GCAGAGCCCCTTTGCATCAT 61.041 55.000 3.23 0.00 40.62 2.45
440 441 1.030457 CAGAGCCCCTTTGCATCATC 58.970 55.000 0.00 0.00 0.00 2.92
441 442 0.627451 AGAGCCCCTTTGCATCATCA 59.373 50.000 0.00 0.00 0.00 3.07
442 443 0.743097 GAGCCCCTTTGCATCATCAC 59.257 55.000 0.00 0.00 0.00 3.06
443 444 1.033746 AGCCCCTTTGCATCATCACG 61.034 55.000 0.00 0.00 0.00 4.35
444 445 2.008268 GCCCCTTTGCATCATCACGG 62.008 60.000 0.00 0.00 0.00 4.94
445 446 0.680921 CCCCTTTGCATCATCACGGT 60.681 55.000 0.00 0.00 0.00 4.83
446 447 0.452987 CCCTTTGCATCATCACGGTG 59.547 55.000 0.56 0.56 0.00 4.94
447 448 1.167851 CCTTTGCATCATCACGGTGT 58.832 50.000 8.17 0.00 0.00 4.16
448 449 1.131126 CCTTTGCATCATCACGGTGTC 59.869 52.381 8.17 0.00 0.00 3.67
449 450 1.131126 CTTTGCATCATCACGGTGTCC 59.869 52.381 8.17 0.00 0.00 4.02
450 451 0.324614 TTGCATCATCACGGTGTCCT 59.675 50.000 8.17 0.00 0.00 3.85
451 452 0.108186 TGCATCATCACGGTGTCCTC 60.108 55.000 8.17 0.00 0.00 3.71
452 453 0.108186 GCATCATCACGGTGTCCTCA 60.108 55.000 8.17 0.00 0.00 3.86
453 454 1.473965 GCATCATCACGGTGTCCTCAT 60.474 52.381 8.17 0.00 0.00 2.90
454 455 2.477825 CATCATCACGGTGTCCTCATC 58.522 52.381 8.17 0.00 0.00 2.92
455 456 1.852633 TCATCACGGTGTCCTCATCT 58.147 50.000 8.17 0.00 0.00 2.90
456 457 2.179427 TCATCACGGTGTCCTCATCTT 58.821 47.619 8.17 0.00 0.00 2.40
457 458 2.166459 TCATCACGGTGTCCTCATCTTC 59.834 50.000 8.17 0.00 0.00 2.87
458 459 1.924731 TCACGGTGTCCTCATCTTCT 58.075 50.000 8.17 0.00 0.00 2.85
459 460 1.819288 TCACGGTGTCCTCATCTTCTC 59.181 52.381 8.17 0.00 0.00 2.87
460 461 1.134965 CACGGTGTCCTCATCTTCTCC 60.135 57.143 0.00 0.00 0.00 3.71
461 462 0.461961 CGGTGTCCTCATCTTCTCCC 59.538 60.000 0.00 0.00 0.00 4.30
462 463 1.872773 GGTGTCCTCATCTTCTCCCT 58.127 55.000 0.00 0.00 0.00 4.20
463 464 1.760029 GGTGTCCTCATCTTCTCCCTC 59.240 57.143 0.00 0.00 0.00 4.30
464 465 2.461695 GTGTCCTCATCTTCTCCCTCA 58.538 52.381 0.00 0.00 0.00 3.86
465 466 3.037549 GTGTCCTCATCTTCTCCCTCAT 58.962 50.000 0.00 0.00 0.00 2.90
466 467 3.069443 GTGTCCTCATCTTCTCCCTCATC 59.931 52.174 0.00 0.00 0.00 2.92
467 468 2.632512 GTCCTCATCTTCTCCCTCATCC 59.367 54.545 0.00 0.00 0.00 3.51
468 469 2.248423 TCCTCATCTTCTCCCTCATCCA 59.752 50.000 0.00 0.00 0.00 3.41
469 470 3.116434 TCCTCATCTTCTCCCTCATCCAT 60.116 47.826 0.00 0.00 0.00 3.41
470 471 3.261390 CCTCATCTTCTCCCTCATCCATC 59.739 52.174 0.00 0.00 0.00 3.51
471 472 3.246301 TCATCTTCTCCCTCATCCATCC 58.754 50.000 0.00 0.00 0.00 3.51
472 473 2.109229 TCTTCTCCCTCATCCATCCC 57.891 55.000 0.00 0.00 0.00 3.85
473 474 1.063183 CTTCTCCCTCATCCATCCCC 58.937 60.000 0.00 0.00 0.00 4.81
474 475 0.649992 TTCTCCCTCATCCATCCCCT 59.350 55.000 0.00 0.00 0.00 4.79
475 476 0.649992 TCTCCCTCATCCATCCCCTT 59.350 55.000 0.00 0.00 0.00 3.95
476 477 1.063183 CTCCCTCATCCATCCCCTTC 58.937 60.000 0.00 0.00 0.00 3.46
477 478 0.401979 TCCCTCATCCATCCCCTTCC 60.402 60.000 0.00 0.00 0.00 3.46
478 479 0.402566 CCCTCATCCATCCCCTTCCT 60.403 60.000 0.00 0.00 0.00 3.36
479 480 1.132397 CCCTCATCCATCCCCTTCCTA 60.132 57.143 0.00 0.00 0.00 2.94
480 481 2.264455 CCTCATCCATCCCCTTCCTAG 58.736 57.143 0.00 0.00 0.00 3.02
481 482 2.428484 CCTCATCCATCCCCTTCCTAGT 60.428 54.545 0.00 0.00 0.00 2.57
482 483 2.903135 CTCATCCATCCCCTTCCTAGTC 59.097 54.545 0.00 0.00 0.00 2.59
483 484 2.250008 TCATCCATCCCCTTCCTAGTCA 59.750 50.000 0.00 0.00 0.00 3.41
484 485 2.176247 TCCATCCCCTTCCTAGTCAC 57.824 55.000 0.00 0.00 0.00 3.67
485 486 1.132500 CCATCCCCTTCCTAGTCACC 58.868 60.000 0.00 0.00 0.00 4.02
486 487 1.344496 CCATCCCCTTCCTAGTCACCT 60.344 57.143 0.00 0.00 0.00 4.00
487 488 2.482494 CATCCCCTTCCTAGTCACCTT 58.518 52.381 0.00 0.00 0.00 3.50
488 489 2.249309 TCCCCTTCCTAGTCACCTTC 57.751 55.000 0.00 0.00 0.00 3.46
489 490 1.722851 TCCCCTTCCTAGTCACCTTCT 59.277 52.381 0.00 0.00 0.00 2.85
490 491 2.113777 TCCCCTTCCTAGTCACCTTCTT 59.886 50.000 0.00 0.00 0.00 2.52
491 492 2.913617 CCCCTTCCTAGTCACCTTCTTT 59.086 50.000 0.00 0.00 0.00 2.52
492 493 3.330998 CCCCTTCCTAGTCACCTTCTTTT 59.669 47.826 0.00 0.00 0.00 2.27
493 494 4.327680 CCCTTCCTAGTCACCTTCTTTTG 58.672 47.826 0.00 0.00 0.00 2.44
494 495 4.202472 CCCTTCCTAGTCACCTTCTTTTGT 60.202 45.833 0.00 0.00 0.00 2.83
495 496 4.757149 CCTTCCTAGTCACCTTCTTTTGTG 59.243 45.833 0.00 0.00 0.00 3.33
496 497 4.351874 TCCTAGTCACCTTCTTTTGTGG 57.648 45.455 0.00 0.00 33.29 4.17
497 498 2.814336 CCTAGTCACCTTCTTTTGTGGC 59.186 50.000 0.00 0.00 37.36 5.01
498 499 1.692411 AGTCACCTTCTTTTGTGGCC 58.308 50.000 0.00 0.00 37.82 5.36
499 500 1.064017 AGTCACCTTCTTTTGTGGCCA 60.064 47.619 0.00 0.00 37.82 5.36
500 501 1.067060 GTCACCTTCTTTTGTGGCCAC 59.933 52.381 29.67 29.67 30.98 5.01
501 502 0.030638 CACCTTCTTTTGTGGCCACG 59.969 55.000 30.07 16.33 0.00 4.94
502 503 0.106918 ACCTTCTTTTGTGGCCACGA 60.107 50.000 30.07 26.57 0.00 4.35
503 504 0.593128 CCTTCTTTTGTGGCCACGAG 59.407 55.000 30.07 25.11 0.00 4.18
504 505 0.040067 CTTCTTTTGTGGCCACGAGC 60.040 55.000 30.07 7.85 42.60 5.03
505 506 0.465460 TTCTTTTGTGGCCACGAGCT 60.465 50.000 30.07 0.00 43.05 4.09
506 507 1.165907 TCTTTTGTGGCCACGAGCTG 61.166 55.000 30.07 20.24 43.05 4.24
507 508 2.133742 CTTTTGTGGCCACGAGCTGG 62.134 60.000 30.07 15.04 44.08 4.85
508 509 2.902423 TTTTGTGGCCACGAGCTGGT 62.902 55.000 30.07 0.00 42.99 4.00
509 510 4.624364 TGTGGCCACGAGCTGGTG 62.624 66.667 30.07 20.86 42.99 4.17
510 511 4.314440 GTGGCCACGAGCTGGTGA 62.314 66.667 28.17 7.52 42.99 4.02
511 512 3.321648 TGGCCACGAGCTGGTGAT 61.322 61.111 28.17 0.00 42.99 3.06
512 513 1.987306 TGGCCACGAGCTGGTGATA 60.987 57.895 28.17 12.07 42.99 2.15
513 514 1.220749 GGCCACGAGCTGGTGATAA 59.779 57.895 28.17 0.00 42.99 1.75
514 515 0.179045 GGCCACGAGCTGGTGATAAT 60.179 55.000 28.17 0.00 42.99 1.28
515 516 0.940126 GCCACGAGCTGGTGATAATG 59.060 55.000 28.17 13.14 42.99 1.90
516 517 1.473257 GCCACGAGCTGGTGATAATGA 60.473 52.381 28.17 0.00 42.99 2.57
517 518 2.808202 GCCACGAGCTGGTGATAATGAT 60.808 50.000 28.17 0.00 42.99 2.45
518 519 3.554960 GCCACGAGCTGGTGATAATGATA 60.555 47.826 28.17 0.00 42.99 2.15
519 520 4.240888 CCACGAGCTGGTGATAATGATAG 58.759 47.826 28.17 6.06 40.38 2.08
520 521 4.240888 CACGAGCTGGTGATAATGATAGG 58.759 47.826 23.05 0.00 40.38 2.57
521 522 3.257393 CGAGCTGGTGATAATGATAGGC 58.743 50.000 0.00 0.00 0.00 3.93
522 523 3.604582 GAGCTGGTGATAATGATAGGCC 58.395 50.000 0.00 0.00 0.00 5.19
523 524 2.981784 AGCTGGTGATAATGATAGGCCA 59.018 45.455 5.01 0.00 0.00 5.36
524 525 3.077359 GCTGGTGATAATGATAGGCCAC 58.923 50.000 5.01 0.00 0.00 5.01
525 526 3.496692 GCTGGTGATAATGATAGGCCACA 60.497 47.826 5.01 2.06 0.00 4.17
526 527 4.717877 CTGGTGATAATGATAGGCCACAA 58.282 43.478 5.01 0.00 0.00 3.33
527 528 4.717877 TGGTGATAATGATAGGCCACAAG 58.282 43.478 5.01 0.00 0.00 3.16
528 529 4.074970 GGTGATAATGATAGGCCACAAGG 58.925 47.826 5.01 0.00 38.23 3.61
529 530 4.074970 GTGATAATGATAGGCCACAAGGG 58.925 47.826 5.01 0.00 40.85 3.95
530 531 3.074390 TGATAATGATAGGCCACAAGGGG 59.926 47.826 5.01 0.00 37.04 4.79
531 532 1.607225 AATGATAGGCCACAAGGGGA 58.393 50.000 5.01 0.00 37.04 4.81
532 533 1.607225 ATGATAGGCCACAAGGGGAA 58.393 50.000 5.01 0.00 37.04 3.97
533 534 1.607225 TGATAGGCCACAAGGGGAAT 58.393 50.000 5.01 0.00 37.04 3.01
534 535 2.782922 TGATAGGCCACAAGGGGAATA 58.217 47.619 5.01 0.00 37.04 1.75
535 536 3.127250 TGATAGGCCACAAGGGGAATAA 58.873 45.455 5.01 0.00 37.04 1.40
536 537 3.138283 TGATAGGCCACAAGGGGAATAAG 59.862 47.826 5.01 0.00 37.04 1.73
537 538 0.033109 AGGCCACAAGGGGAATAAGC 60.033 55.000 5.01 0.00 37.04 3.09
538 539 1.043116 GGCCACAAGGGGAATAAGCC 61.043 60.000 0.00 0.00 37.04 4.35
539 540 0.033109 GCCACAAGGGGAATAAGCCT 60.033 55.000 0.00 0.00 37.04 4.58
540 541 1.214424 GCCACAAGGGGAATAAGCCTA 59.786 52.381 0.00 0.00 37.04 3.93
541 542 2.749800 GCCACAAGGGGAATAAGCCTAG 60.750 54.545 0.00 0.00 37.04 3.02
542 543 2.777692 CCACAAGGGGAATAAGCCTAGA 59.222 50.000 0.00 0.00 0.00 2.43
543 544 3.395941 CCACAAGGGGAATAAGCCTAGAT 59.604 47.826 0.00 0.00 0.00 1.98
544 545 4.392940 CACAAGGGGAATAAGCCTAGATG 58.607 47.826 0.00 0.00 0.00 2.90
545 546 4.047883 ACAAGGGGAATAAGCCTAGATGT 58.952 43.478 0.00 0.00 0.00 3.06
546 547 5.071788 CACAAGGGGAATAAGCCTAGATGTA 59.928 44.000 0.00 0.00 0.00 2.29
547 548 5.308237 ACAAGGGGAATAAGCCTAGATGTAG 59.692 44.000 0.00 0.00 0.00 2.74
552 553 6.410504 GGGGAATAAGCCTAGATGTAGGTTTT 60.411 42.308 20.72 15.29 45.10 2.43
553 554 7.202158 GGGGAATAAGCCTAGATGTAGGTTTTA 60.202 40.741 20.72 16.65 45.10 1.52
554 555 8.383947 GGGAATAAGCCTAGATGTAGGTTTTAT 58.616 37.037 20.72 17.83 45.10 1.40
560 561 7.715686 AAGCCTAGATGTAGGTTTTATAAGTGC 59.284 37.037 16.81 0.00 45.10 4.40
562 563 8.594881 CCTAGATGTAGGTTTTATAAGTGCAG 57.405 38.462 7.79 0.00 41.15 4.41
563 564 6.927294 AGATGTAGGTTTTATAAGTGCAGC 57.073 37.500 0.00 0.00 0.00 5.25
564 565 5.823045 AGATGTAGGTTTTATAAGTGCAGCC 59.177 40.000 0.00 0.00 0.00 4.85
565 566 4.266714 TGTAGGTTTTATAAGTGCAGCCC 58.733 43.478 0.00 0.00 0.00 5.19
585 586 4.466726 GCCCCTATATACTAGTGGTTGGAG 59.533 50.000 5.39 0.00 0.00 3.86
597 598 4.675161 TTGGAGGCCGCCATTGCA 62.675 61.111 30.16 11.73 37.86 4.08
615 616 1.134848 GCAGATCGCTTGAGAGGAAGT 60.135 52.381 2.84 0.00 37.77 3.01
624 625 0.464036 TGAGAGGAAGTTGTGTGCGT 59.536 50.000 0.00 0.00 0.00 5.24
625 626 0.861837 GAGAGGAAGTTGTGTGCGTG 59.138 55.000 0.00 0.00 0.00 5.34
626 627 0.532862 AGAGGAAGTTGTGTGCGTGG 60.533 55.000 0.00 0.00 0.00 4.94
630 631 0.028902 GAAGTTGTGTGCGTGGGTTC 59.971 55.000 0.00 0.00 0.00 3.62
671 672 5.948992 AAATTCTTCCCTTCGTCTCAAAG 57.051 39.130 0.00 0.00 0.00 2.77
676 677 3.955650 TCCCTTCGTCTCAAAGTTAGG 57.044 47.619 0.00 0.00 0.00 2.69
678 679 3.899360 TCCCTTCGTCTCAAAGTTAGGAA 59.101 43.478 0.00 0.00 0.00 3.36
712 713 6.014584 TCACATCAACCAACTAGCTTAAGAGA 60.015 38.462 6.67 0.00 0.00 3.10
890 914 2.024414 CTTCTTTCGGCCTTAATGGGG 58.976 52.381 0.00 0.00 36.00 4.96
898 922 2.793278 GCCTTAATGGGGCGTTAATG 57.207 50.000 0.00 0.00 40.19 1.90
899 923 1.339929 GCCTTAATGGGGCGTTAATGG 59.660 52.381 0.00 0.00 40.19 3.16
900 924 1.960689 CCTTAATGGGGCGTTAATGGG 59.039 52.381 0.00 0.00 0.00 4.00
984 1008 1.026718 GGGTCCTGCGGTGAAATCAG 61.027 60.000 0.00 0.00 0.00 2.90
1312 1336 1.604278 GGCTATCTTTTTAGCTGGGCG 59.396 52.381 0.00 0.00 43.37 6.13
1346 1370 1.202879 TGGTTCGAGCCACCAAATCTT 60.203 47.619 17.98 0.00 41.58 2.40
1347 1371 1.886542 GGTTCGAGCCACCAAATCTTT 59.113 47.619 14.14 0.00 34.04 2.52
1348 1372 2.296190 GGTTCGAGCCACCAAATCTTTT 59.704 45.455 14.14 0.00 34.04 2.27
1354 1378 4.217550 CGAGCCACCAAATCTTTTAGGAAA 59.782 41.667 0.00 0.00 0.00 3.13
1355 1379 5.468540 AGCCACCAAATCTTTTAGGAAAC 57.531 39.130 0.00 0.00 0.00 2.78
1357 1381 5.243954 AGCCACCAAATCTTTTAGGAAACTC 59.756 40.000 0.00 0.00 43.67 3.01
1358 1382 5.010617 GCCACCAAATCTTTTAGGAAACTCA 59.989 40.000 0.00 0.00 43.67 3.41
1359 1383 6.447162 CCACCAAATCTTTTAGGAAACTCAC 58.553 40.000 0.00 0.00 43.67 3.51
1379 1432 2.047769 CGTCTAGCTTGCTATCGCTTC 58.952 52.381 2.59 0.00 37.68 3.86
1437 1490 5.295540 GTGTTAATGTGCCCATTTGTGTTTT 59.704 36.000 0.00 0.00 41.50 2.43
1439 1492 4.897025 AATGTGCCCATTTGTGTTTTTG 57.103 36.364 0.00 0.00 38.10 2.44
1511 1565 3.118629 CCCCTCGATTGTTTCAGATCTGA 60.119 47.826 21.67 21.67 37.91 3.27
1536 1590 7.417612 ACAATTGTTCTTTGCTTGTACACTAG 58.582 34.615 4.92 0.00 0.00 2.57
1653 1708 5.958955 TGAGATCAACTACTGTCTGTCATG 58.041 41.667 0.00 0.00 0.00 3.07
1677 1732 8.613613 TGTAATGCTAAGAATTTACATTTGCG 57.386 30.769 0.00 0.00 33.31 4.85
1693 1748 6.442952 ACATTTGCGTCAGTTGCTTTTAATA 58.557 32.000 0.00 0.00 0.00 0.98
1934 1992 3.241530 AAGCCAGGTGAGGTGCGA 61.242 61.111 0.00 0.00 0.00 5.10
1943 2001 2.158871 AGGTGAGGTGCGAAACTGTTAA 60.159 45.455 0.00 0.00 0.00 2.01
1986 2044 6.364701 AGCCCTATGTTTAACATCAAGCATA 58.635 36.000 14.29 0.00 39.88 3.14
2068 2130 3.508744 AAGCAGCGGGATACAATTTTG 57.491 42.857 0.00 0.00 39.74 2.44
2071 2133 4.013728 AGCAGCGGGATACAATTTTGTTA 58.986 39.130 0.63 0.00 42.35 2.41
2139 2205 9.071276 CAAACTGATATTGCAATCTAGGGTATT 57.929 33.333 16.86 0.67 0.00 1.89
2222 2288 3.860717 CGTGATGCGCTTCAGTCA 58.139 55.556 24.61 10.47 0.00 3.41
2252 2318 0.521291 GCCTGTGATACGCAAAAGCA 59.479 50.000 0.00 0.00 0.00 3.91
2268 2334 2.892425 CACGGGGAGAGCGAATGC 60.892 66.667 0.00 0.00 43.24 3.56
2277 2343 0.512952 AGAGCGAATGCACAAACGTC 59.487 50.000 0.00 0.00 46.23 4.34
2349 2415 4.712476 GGTATCACTGGAAGCATGAGATT 58.288 43.478 0.00 0.00 37.60 2.40
2352 2418 6.939163 GGTATCACTGGAAGCATGAGATTAAT 59.061 38.462 0.00 0.00 37.60 1.40
2379 2445 0.673022 CAGGTGCTCAGCTCTGGAAC 60.673 60.000 11.31 0.00 36.98 3.62
2589 2657 4.517952 TGTTTTGGGCATGTGAATACAG 57.482 40.909 0.00 0.00 40.79 2.74
2635 2705 6.554334 TGTTGACTGTTTAGAAACTATGCC 57.446 37.500 6.69 0.00 39.59 4.40
2702 2849 4.827692 TGACGAGCAAGGTTGTAATACAT 58.172 39.130 0.00 0.00 0.00 2.29
2768 2915 9.336171 GATACTTTTTCCTTAATCAGCTGATCT 57.664 33.333 28.83 19.90 32.75 2.75
2774 2921 4.225942 TCCTTAATCAGCTGATCTTGGTGT 59.774 41.667 28.83 14.19 32.75 4.16
2775 2922 4.574013 CCTTAATCAGCTGATCTTGGTGTC 59.426 45.833 28.83 0.00 32.75 3.67
2840 2987 2.135139 TGCAAGTGTGTAGAAAGAGCG 58.865 47.619 0.00 0.00 0.00 5.03
2888 3038 2.034053 ACACGGCACACATTTTAGTTGG 59.966 45.455 0.00 0.00 0.00 3.77
2890 3040 2.691011 ACGGCACACATTTTAGTTGGTT 59.309 40.909 0.00 0.00 0.00 3.67
2905 3055 0.033601 TGGTTGCTGGTGAACTGGTT 60.034 50.000 0.00 0.00 0.00 3.67
2938 3088 1.931841 CTGAGCCTCACACATGATTCG 59.068 52.381 0.00 0.00 33.22 3.34
3008 3158 2.822399 GCGGTAGCAGGCATAGGT 59.178 61.111 0.00 0.00 44.35 3.08
3009 3159 2.046938 GCGGTAGCAGGCATAGGTA 58.953 57.895 0.00 0.00 44.35 3.08
3011 3161 1.404315 GCGGTAGCAGGCATAGGTATC 60.404 57.143 0.00 0.00 44.35 2.24
3060 3213 1.279271 GTAGTGTTGATCCCCACTGCT 59.721 52.381 19.33 6.98 41.77 4.24
3070 3223 0.904865 CCCCACTGCTACTCCTCACA 60.905 60.000 0.00 0.00 0.00 3.58
3071 3224 0.976641 CCCACTGCTACTCCTCACAA 59.023 55.000 0.00 0.00 0.00 3.33
3072 3225 1.338200 CCCACTGCTACTCCTCACAAC 60.338 57.143 0.00 0.00 0.00 3.32
3073 3226 1.338200 CCACTGCTACTCCTCACAACC 60.338 57.143 0.00 0.00 0.00 3.77
3075 3228 1.270907 CTGCTACTCCTCACAACCCT 58.729 55.000 0.00 0.00 0.00 4.34
3084 3240 1.352352 CCTCACAACCCTCATTCACCT 59.648 52.381 0.00 0.00 0.00 4.00
3092 3248 1.668419 CCTCATTCACCTTAAGGCCG 58.332 55.000 21.92 13.01 39.32 6.13
3114 3271 4.652822 GACTTCAACACTAGACCCCAAAT 58.347 43.478 0.00 0.00 0.00 2.32
3115 3272 4.398319 ACTTCAACACTAGACCCCAAATG 58.602 43.478 0.00 0.00 0.00 2.32
3116 3273 4.104102 ACTTCAACACTAGACCCCAAATGA 59.896 41.667 0.00 0.00 0.00 2.57
3118 3275 4.394729 TCAACACTAGACCCCAAATGAAC 58.605 43.478 0.00 0.00 0.00 3.18
3123 3280 0.768622 AGACCCCAAATGAACGTCCA 59.231 50.000 0.00 0.00 0.00 4.02
3131 3288 4.447389 CCCAAATGAACGTCCATTTTGTTC 59.553 41.667 10.31 0.00 42.26 3.18
3150 3307 3.507597 GGATTTTGTCCGTTTGGGC 57.492 52.632 0.00 0.00 41.64 5.36
3307 3466 2.858745 TGTCCACAAAGTCTTAAGGCC 58.141 47.619 2.75 0.00 0.00 5.19
3364 3532 0.037046 AAAAATAGGGCCGTCGTCGT 60.037 50.000 0.00 0.00 35.01 4.34
3388 3556 0.038526 GCCTCCGTCTTCGTCTTCAA 60.039 55.000 0.00 0.00 35.01 2.69
3389 3557 1.699343 CCTCCGTCTTCGTCTTCAAC 58.301 55.000 0.00 0.00 35.01 3.18
3411 3579 2.490685 GCCCTCGTCGTCCTCTTC 59.509 66.667 0.00 0.00 0.00 2.87
3437 3605 4.504864 CCTTTGTCAGGTTGATGTAGGACA 60.505 45.833 0.00 0.00 37.99 4.02
3438 3606 3.961480 TGTCAGGTTGATGTAGGACAG 57.039 47.619 0.00 0.00 32.13 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.839946 ATAGGGCTGTTTGGATCGCT 59.160 50.000 0.00 0.00 0.00 4.93
1 2 2.224305 ACTATAGGGCTGTTTGGATCGC 60.224 50.000 4.43 0.00 0.00 4.58
2 3 3.069586 TGACTATAGGGCTGTTTGGATCG 59.930 47.826 4.43 0.00 0.00 3.69
3 4 4.689612 TGACTATAGGGCTGTTTGGATC 57.310 45.455 4.43 0.00 0.00 3.36
4 5 5.044846 ACTTTGACTATAGGGCTGTTTGGAT 60.045 40.000 4.43 0.00 0.00 3.41
5 6 4.288626 ACTTTGACTATAGGGCTGTTTGGA 59.711 41.667 4.43 0.00 0.00 3.53
6 7 4.396166 CACTTTGACTATAGGGCTGTTTGG 59.604 45.833 4.43 0.00 0.00 3.28
7 8 5.003804 ACACTTTGACTATAGGGCTGTTTG 58.996 41.667 4.43 0.00 0.00 2.93
8 9 5.221843 TGACACTTTGACTATAGGGCTGTTT 60.222 40.000 4.43 0.00 0.00 2.83
9 10 4.286032 TGACACTTTGACTATAGGGCTGTT 59.714 41.667 4.43 0.00 0.00 3.16
10 11 3.838317 TGACACTTTGACTATAGGGCTGT 59.162 43.478 4.43 0.00 0.00 4.40
11 12 4.471904 TGACACTTTGACTATAGGGCTG 57.528 45.455 4.43 0.00 0.00 4.85
12 13 5.013183 AGTTTGACACTTTGACTATAGGGCT 59.987 40.000 4.43 0.00 27.32 5.19
13 14 5.246307 AGTTTGACACTTTGACTATAGGGC 58.754 41.667 4.43 0.00 27.32 5.19
14 15 7.612677 AGTAGTTTGACACTTTGACTATAGGG 58.387 38.462 4.43 0.00 36.88 3.53
18 19 9.036980 AGGATAGTAGTTTGACACTTTGACTAT 57.963 33.333 0.00 0.00 37.45 2.12
19 20 8.418597 AGGATAGTAGTTTGACACTTTGACTA 57.581 34.615 0.00 0.00 36.88 2.59
20 21 7.304497 AGGATAGTAGTTTGACACTTTGACT 57.696 36.000 0.00 0.00 36.88 3.41
21 22 7.964604 AAGGATAGTAGTTTGACACTTTGAC 57.035 36.000 0.00 0.00 36.88 3.18
22 23 8.974060 AAAAGGATAGTAGTTTGACACTTTGA 57.026 30.769 0.00 0.00 36.88 2.69
55 56 9.709600 GCTTCACTATAGAAAAAGATAGTTTGC 57.290 33.333 6.78 0.00 36.87 3.68
132 133 9.507329 GAGCATTAGGTGGAATAGATCAAAATA 57.493 33.333 0.00 0.00 0.00 1.40
133 134 8.000709 TGAGCATTAGGTGGAATAGATCAAAAT 58.999 33.333 0.00 0.00 0.00 1.82
134 135 7.345691 TGAGCATTAGGTGGAATAGATCAAAA 58.654 34.615 0.00 0.00 0.00 2.44
135 136 6.899089 TGAGCATTAGGTGGAATAGATCAAA 58.101 36.000 0.00 0.00 0.00 2.69
136 137 6.499106 TGAGCATTAGGTGGAATAGATCAA 57.501 37.500 0.00 0.00 0.00 2.57
137 138 6.692849 ATGAGCATTAGGTGGAATAGATCA 57.307 37.500 0.00 0.00 0.00 2.92
138 139 9.678260 AATAATGAGCATTAGGTGGAATAGATC 57.322 33.333 8.67 0.00 36.79 2.75
139 140 9.678260 GAATAATGAGCATTAGGTGGAATAGAT 57.322 33.333 8.67 0.00 36.79 1.98
140 141 8.103305 GGAATAATGAGCATTAGGTGGAATAGA 58.897 37.037 8.67 0.00 36.79 1.98
141 142 7.337942 GGGAATAATGAGCATTAGGTGGAATAG 59.662 40.741 8.67 0.00 36.79 1.73
142 143 7.175104 GGGAATAATGAGCATTAGGTGGAATA 58.825 38.462 8.67 0.00 36.79 1.75
143 144 6.012745 GGGAATAATGAGCATTAGGTGGAAT 58.987 40.000 8.67 0.00 36.79 3.01
144 145 5.103728 TGGGAATAATGAGCATTAGGTGGAA 60.104 40.000 8.67 0.00 36.79 3.53
145 146 4.415179 TGGGAATAATGAGCATTAGGTGGA 59.585 41.667 8.67 0.00 36.79 4.02
146 147 4.728772 TGGGAATAATGAGCATTAGGTGG 58.271 43.478 8.67 0.00 36.79 4.61
147 148 6.906157 AATGGGAATAATGAGCATTAGGTG 57.094 37.500 8.67 0.00 36.79 4.00
148 149 7.068702 TCAAATGGGAATAATGAGCATTAGGT 58.931 34.615 8.67 0.31 36.79 3.08
149 150 7.232127 ACTCAAATGGGAATAATGAGCATTAGG 59.768 37.037 8.67 0.00 40.86 2.69
150 151 8.174733 ACTCAAATGGGAATAATGAGCATTAG 57.825 34.615 8.67 0.00 40.86 1.73
151 152 9.066892 GTACTCAAATGGGAATAATGAGCATTA 57.933 33.333 5.48 5.48 40.86 1.90
152 153 7.560991 TGTACTCAAATGGGAATAATGAGCATT 59.439 33.333 0.97 0.97 40.86 3.56
153 154 7.062322 TGTACTCAAATGGGAATAATGAGCAT 58.938 34.615 0.00 0.00 40.86 3.79
154 155 6.422333 TGTACTCAAATGGGAATAATGAGCA 58.578 36.000 0.00 0.00 40.86 4.26
155 156 6.942532 TGTACTCAAATGGGAATAATGAGC 57.057 37.500 0.00 0.00 40.86 4.26
179 180 9.972106 AGGCCCAAAATCAAATTTTCATTTATA 57.028 25.926 0.00 0.00 40.27 0.98
180 181 8.741841 CAGGCCCAAAATCAAATTTTCATTTAT 58.258 29.630 0.00 0.00 40.27 1.40
181 182 7.176340 CCAGGCCCAAAATCAAATTTTCATTTA 59.824 33.333 0.00 0.00 40.27 1.40
182 183 6.015265 CCAGGCCCAAAATCAAATTTTCATTT 60.015 34.615 0.00 0.00 40.27 2.32
183 184 5.477637 CCAGGCCCAAAATCAAATTTTCATT 59.522 36.000 0.00 0.00 40.27 2.57
184 185 5.011586 CCAGGCCCAAAATCAAATTTTCAT 58.988 37.500 0.00 0.00 40.27 2.57
185 186 4.396522 CCAGGCCCAAAATCAAATTTTCA 58.603 39.130 0.00 0.00 40.27 2.69
186 187 3.191162 GCCAGGCCCAAAATCAAATTTTC 59.809 43.478 0.00 0.00 40.27 2.29
187 188 3.156293 GCCAGGCCCAAAATCAAATTTT 58.844 40.909 0.00 0.00 42.81 1.82
188 189 2.555006 GGCCAGGCCCAAAATCAAATTT 60.555 45.455 21.62 0.00 44.06 1.82
189 190 1.004628 GGCCAGGCCCAAAATCAAATT 59.995 47.619 21.62 0.00 44.06 1.82
190 191 0.620030 GGCCAGGCCCAAAATCAAAT 59.380 50.000 21.62 0.00 44.06 2.32
191 192 2.065483 GGCCAGGCCCAAAATCAAA 58.935 52.632 21.62 0.00 44.06 2.69
192 193 3.804490 GGCCAGGCCCAAAATCAA 58.196 55.556 21.62 0.00 44.06 2.57
203 204 4.486503 GGAGCAGCTGAGGCCAGG 62.487 72.222 20.43 0.00 40.72 4.45
204 205 3.400928 AGGAGCAGCTGAGGCCAG 61.401 66.667 20.43 0.00 43.22 4.85
205 206 3.714001 CAGGAGCAGCTGAGGCCA 61.714 66.667 20.43 0.00 39.73 5.36
206 207 1.406065 TATCAGGAGCAGCTGAGGCC 61.406 60.000 20.43 14.65 39.73 5.19
207 208 0.686224 ATATCAGGAGCAGCTGAGGC 59.314 55.000 20.43 1.09 39.06 4.70
208 209 1.969208 TGATATCAGGAGCAGCTGAGG 59.031 52.381 20.43 0.76 32.74 3.86
209 210 3.181468 TGTTGATATCAGGAGCAGCTGAG 60.181 47.826 20.43 0.82 32.74 3.35
210 211 2.767960 TGTTGATATCAGGAGCAGCTGA 59.232 45.455 20.43 0.00 0.00 4.26
211 212 3.189618 TGTTGATATCAGGAGCAGCTG 57.810 47.619 10.11 10.11 0.00 4.24
212 213 3.554544 CGATGTTGATATCAGGAGCAGCT 60.555 47.826 5.39 0.00 0.00 4.24
213 214 2.735663 CGATGTTGATATCAGGAGCAGC 59.264 50.000 5.39 6.25 0.00 5.25
214 215 3.986572 GACGATGTTGATATCAGGAGCAG 59.013 47.826 5.39 0.77 0.00 4.24
215 216 3.243873 GGACGATGTTGATATCAGGAGCA 60.244 47.826 5.39 4.91 0.00 4.26
216 217 3.243873 TGGACGATGTTGATATCAGGAGC 60.244 47.826 5.39 0.00 0.00 4.70
217 218 4.554292 CTGGACGATGTTGATATCAGGAG 58.446 47.826 5.39 0.58 0.00 3.69
218 219 3.243873 GCTGGACGATGTTGATATCAGGA 60.244 47.826 5.39 0.00 0.00 3.86
219 220 3.062763 GCTGGACGATGTTGATATCAGG 58.937 50.000 5.39 0.00 0.00 3.86
220 221 3.062763 GGCTGGACGATGTTGATATCAG 58.937 50.000 5.39 0.00 0.00 2.90
221 222 2.700371 AGGCTGGACGATGTTGATATCA 59.300 45.455 0.00 0.00 0.00 2.15
222 223 3.243873 TGAGGCTGGACGATGTTGATATC 60.244 47.826 0.00 0.00 0.00 1.63
223 224 2.700371 TGAGGCTGGACGATGTTGATAT 59.300 45.455 0.00 0.00 0.00 1.63
224 225 2.107366 TGAGGCTGGACGATGTTGATA 58.893 47.619 0.00 0.00 0.00 2.15
225 226 0.904649 TGAGGCTGGACGATGTTGAT 59.095 50.000 0.00 0.00 0.00 2.57
226 227 0.904649 ATGAGGCTGGACGATGTTGA 59.095 50.000 0.00 0.00 0.00 3.18
227 228 1.012086 CATGAGGCTGGACGATGTTG 58.988 55.000 0.00 0.00 0.00 3.33
228 229 0.615331 ACATGAGGCTGGACGATGTT 59.385 50.000 0.00 0.00 0.00 2.71
229 230 0.107993 CACATGAGGCTGGACGATGT 60.108 55.000 0.00 0.00 0.00 3.06
230 231 0.176449 TCACATGAGGCTGGACGATG 59.824 55.000 0.00 0.00 0.00 3.84
231 232 0.904649 TTCACATGAGGCTGGACGAT 59.095 50.000 0.00 0.00 0.00 3.73
232 233 0.904649 ATTCACATGAGGCTGGACGA 59.095 50.000 0.00 0.00 0.00 4.20
233 234 1.293924 GATTCACATGAGGCTGGACG 58.706 55.000 0.00 0.00 0.00 4.79
234 235 1.065199 TGGATTCACATGAGGCTGGAC 60.065 52.381 0.00 0.00 0.00 4.02
235 236 1.065199 GTGGATTCACATGAGGCTGGA 60.065 52.381 0.00 0.00 43.13 3.86
236 237 1.386533 GTGGATTCACATGAGGCTGG 58.613 55.000 0.00 0.00 43.13 4.85
237 238 1.012086 CGTGGATTCACATGAGGCTG 58.988 55.000 4.68 0.00 43.79 4.85
238 239 0.745845 GCGTGGATTCACATGAGGCT 60.746 55.000 4.68 0.00 43.79 4.58
239 240 1.723870 GCGTGGATTCACATGAGGC 59.276 57.895 4.68 0.00 43.79 4.70
240 241 0.740868 ACGCGTGGATTCACATGAGG 60.741 55.000 12.93 0.00 43.79 3.86
241 242 1.061131 GAACGCGTGGATTCACATGAG 59.939 52.381 14.98 0.00 43.79 2.90
242 243 1.075542 GAACGCGTGGATTCACATGA 58.924 50.000 14.98 0.00 43.79 3.07
243 244 1.078709 AGAACGCGTGGATTCACATG 58.921 50.000 14.98 0.00 43.79 3.21
244 245 1.808411 AAGAACGCGTGGATTCACAT 58.192 45.000 14.98 0.00 43.79 3.21
245 246 2.288579 ACTAAGAACGCGTGGATTCACA 60.289 45.455 14.98 0.00 43.79 3.58
246 247 2.334838 ACTAAGAACGCGTGGATTCAC 58.665 47.619 14.98 0.00 40.36 3.18
247 248 2.029739 TGACTAAGAACGCGTGGATTCA 60.030 45.455 14.98 8.50 0.00 2.57
248 249 2.602878 TGACTAAGAACGCGTGGATTC 58.397 47.619 14.98 6.52 0.00 2.52
249 250 2.736144 TGACTAAGAACGCGTGGATT 57.264 45.000 14.98 10.91 0.00 3.01
250 251 2.961526 ATGACTAAGAACGCGTGGAT 57.038 45.000 14.98 4.05 0.00 3.41
251 252 2.479049 GCTATGACTAAGAACGCGTGGA 60.479 50.000 14.98 0.00 0.00 4.02
252 253 1.852895 GCTATGACTAAGAACGCGTGG 59.147 52.381 14.98 3.60 0.00 4.94
253 254 1.852895 GGCTATGACTAAGAACGCGTG 59.147 52.381 14.98 1.17 0.00 5.34
254 255 1.533338 CGGCTATGACTAAGAACGCGT 60.533 52.381 5.58 5.58 0.00 6.01
255 256 1.121240 CGGCTATGACTAAGAACGCG 58.879 55.000 3.53 3.53 0.00 6.01
256 257 2.486951 TCGGCTATGACTAAGAACGC 57.513 50.000 0.00 0.00 0.00 4.84
257 258 3.791887 CACTTCGGCTATGACTAAGAACG 59.208 47.826 0.00 0.00 0.00 3.95
258 259 4.745649 ACACTTCGGCTATGACTAAGAAC 58.254 43.478 0.00 0.00 0.00 3.01
259 260 5.450137 GCTACACTTCGGCTATGACTAAGAA 60.450 44.000 0.00 0.00 0.00 2.52
260 261 4.036498 GCTACACTTCGGCTATGACTAAGA 59.964 45.833 0.00 0.00 0.00 2.10
261 262 4.202020 TGCTACACTTCGGCTATGACTAAG 60.202 45.833 0.00 0.00 0.00 2.18
262 263 3.697542 TGCTACACTTCGGCTATGACTAA 59.302 43.478 0.00 0.00 0.00 2.24
263 264 3.284617 TGCTACACTTCGGCTATGACTA 58.715 45.455 0.00 0.00 0.00 2.59
264 265 2.100197 TGCTACACTTCGGCTATGACT 58.900 47.619 0.00 0.00 0.00 3.41
265 266 2.579207 TGCTACACTTCGGCTATGAC 57.421 50.000 0.00 0.00 0.00 3.06
266 267 4.929819 TTATGCTACACTTCGGCTATGA 57.070 40.909 0.00 0.00 0.00 2.15
267 268 5.984233 TTTTATGCTACACTTCGGCTATG 57.016 39.130 0.00 0.00 0.00 2.23
288 289 2.304470 AGTGTTGGCCCACTTTGTTTTT 59.696 40.909 8.65 0.00 42.99 1.94
289 290 1.905894 AGTGTTGGCCCACTTTGTTTT 59.094 42.857 8.65 0.00 42.99 2.43
290 291 1.567357 AGTGTTGGCCCACTTTGTTT 58.433 45.000 8.65 0.00 42.99 2.83
291 292 2.028876 GTAGTGTTGGCCCACTTTGTT 58.971 47.619 18.30 0.00 42.99 2.83
292 293 1.064314 TGTAGTGTTGGCCCACTTTGT 60.064 47.619 18.30 0.00 42.99 2.83
293 294 1.686355 TGTAGTGTTGGCCCACTTTG 58.314 50.000 18.30 0.00 42.99 2.77
294 295 2.675658 ATGTAGTGTTGGCCCACTTT 57.324 45.000 18.30 4.74 42.99 2.66
295 296 2.675658 AATGTAGTGTTGGCCCACTT 57.324 45.000 18.30 5.08 42.99 3.16
296 297 3.799432 TTAATGTAGTGTTGGCCCACT 57.201 42.857 17.40 17.40 46.94 4.00
297 298 4.805219 CTTTTAATGTAGTGTTGGCCCAC 58.195 43.478 0.00 0.00 35.53 4.61
298 299 3.257127 GCTTTTAATGTAGTGTTGGCCCA 59.743 43.478 0.00 0.00 0.00 5.36
299 300 3.672241 CGCTTTTAATGTAGTGTTGGCCC 60.672 47.826 0.00 0.00 0.00 5.80
300 301 3.498082 CGCTTTTAATGTAGTGTTGGCC 58.502 45.455 0.00 0.00 0.00 5.36
301 302 3.057806 ACCGCTTTTAATGTAGTGTTGGC 60.058 43.478 0.00 0.00 0.00 4.52
302 303 4.759516 ACCGCTTTTAATGTAGTGTTGG 57.240 40.909 0.00 0.00 0.00 3.77
303 304 5.672819 GCCTACCGCTTTTAATGTAGTGTTG 60.673 44.000 0.00 0.00 30.98 3.33
304 305 4.393990 GCCTACCGCTTTTAATGTAGTGTT 59.606 41.667 0.00 0.00 30.98 3.32
305 306 3.937079 GCCTACCGCTTTTAATGTAGTGT 59.063 43.478 0.00 0.00 30.98 3.55
306 307 3.000925 CGCCTACCGCTTTTAATGTAGTG 59.999 47.826 0.00 0.00 34.21 2.74
307 308 3.192466 CGCCTACCGCTTTTAATGTAGT 58.808 45.455 0.00 0.00 34.21 2.73
308 309 3.854286 CGCCTACCGCTTTTAATGTAG 57.146 47.619 0.00 0.00 34.21 2.74
320 321 2.055310 TACACGAGATGCGCCTACCG 62.055 60.000 4.18 6.36 46.04 4.02
321 322 0.317938 CTACACGAGATGCGCCTACC 60.318 60.000 4.18 0.00 46.04 3.18
322 323 0.935366 GCTACACGAGATGCGCCTAC 60.935 60.000 4.18 0.00 46.04 3.18
323 324 1.359117 GCTACACGAGATGCGCCTA 59.641 57.895 4.18 0.00 46.04 3.93
324 325 2.105128 GCTACACGAGATGCGCCT 59.895 61.111 4.18 0.00 46.04 5.52
334 335 6.291164 GCTAAATTTCTAGTTCTCGCTACACG 60.291 42.308 0.00 0.00 45.62 4.49
335 336 6.530534 TGCTAAATTTCTAGTTCTCGCTACAC 59.469 38.462 0.00 0.00 0.00 2.90
336 337 6.627243 TGCTAAATTTCTAGTTCTCGCTACA 58.373 36.000 0.00 0.00 0.00 2.74
337 338 7.306866 CCATGCTAAATTTCTAGTTCTCGCTAC 60.307 40.741 0.00 0.00 0.00 3.58
338 339 6.701841 CCATGCTAAATTTCTAGTTCTCGCTA 59.298 38.462 0.00 0.00 0.00 4.26
339 340 5.525378 CCATGCTAAATTTCTAGTTCTCGCT 59.475 40.000 0.00 0.00 0.00 4.93
340 341 5.742446 CCATGCTAAATTTCTAGTTCTCGC 58.258 41.667 0.00 0.00 0.00 5.03
341 342 5.277538 GGCCATGCTAAATTTCTAGTTCTCG 60.278 44.000 0.00 0.00 0.00 4.04
342 343 5.009110 GGGCCATGCTAAATTTCTAGTTCTC 59.991 44.000 4.39 0.00 0.00 2.87
343 344 4.889995 GGGCCATGCTAAATTTCTAGTTCT 59.110 41.667 4.39 0.00 0.00 3.01
344 345 4.261197 CGGGCCATGCTAAATTTCTAGTTC 60.261 45.833 4.39 0.00 0.00 3.01
345 346 3.632145 CGGGCCATGCTAAATTTCTAGTT 59.368 43.478 4.39 0.00 0.00 2.24
346 347 3.214328 CGGGCCATGCTAAATTTCTAGT 58.786 45.455 4.39 0.00 0.00 2.57
347 348 2.554032 CCGGGCCATGCTAAATTTCTAG 59.446 50.000 4.39 0.00 0.00 2.43
348 349 2.582052 CCGGGCCATGCTAAATTTCTA 58.418 47.619 4.39 0.00 0.00 2.10
349 350 1.402787 CCGGGCCATGCTAAATTTCT 58.597 50.000 4.39 0.00 0.00 2.52
350 351 0.389025 CCCGGGCCATGCTAAATTTC 59.611 55.000 8.08 0.00 0.00 2.17
351 352 0.325203 ACCCGGGCCATGCTAAATTT 60.325 50.000 24.08 0.00 0.00 1.82
352 353 1.042559 CACCCGGGCCATGCTAAATT 61.043 55.000 24.08 0.00 0.00 1.82
353 354 1.455587 CACCCGGGCCATGCTAAAT 60.456 57.895 24.08 0.00 0.00 1.40
354 355 1.563577 TACACCCGGGCCATGCTAAA 61.564 55.000 24.08 0.00 0.00 1.85
355 356 1.978455 CTACACCCGGGCCATGCTAA 61.978 60.000 24.08 0.00 0.00 3.09
356 357 2.365768 TACACCCGGGCCATGCTA 60.366 61.111 24.08 4.21 0.00 3.49
357 358 3.797353 CTACACCCGGGCCATGCT 61.797 66.667 24.08 5.21 0.00 3.79
358 359 4.109675 ACTACACCCGGGCCATGC 62.110 66.667 24.08 0.00 0.00 4.06
359 360 2.189521 GACTACACCCGGGCCATG 59.810 66.667 24.08 15.03 0.00 3.66
360 361 3.087906 GGACTACACCCGGGCCAT 61.088 66.667 24.08 8.97 0.00 4.40
361 362 4.326227 AGGACTACACCCGGGCCA 62.326 66.667 24.08 4.45 0.00 5.36
362 363 3.782443 CAGGACTACACCCGGGCC 61.782 72.222 24.08 13.10 0.00 5.80
363 364 3.782443 CCAGGACTACACCCGGGC 61.782 72.222 24.08 1.80 32.50 6.13
364 365 3.081409 CCCAGGACTACACCCGGG 61.081 72.222 22.25 22.25 38.54 5.73
365 366 3.782443 GCCCAGGACTACACCCGG 61.782 72.222 0.00 0.00 0.00 5.73
366 367 3.782443 GGCCCAGGACTACACCCG 61.782 72.222 0.00 0.00 0.00 5.28
367 368 2.285442 AGGCCCAGGACTACACCC 60.285 66.667 0.00 0.00 0.00 4.61
368 369 2.990479 CAGGCCCAGGACTACACC 59.010 66.667 0.00 0.00 0.00 4.16
369 370 2.269241 GCAGGCCCAGGACTACAC 59.731 66.667 0.00 0.00 0.00 2.90
370 371 3.009115 GGCAGGCCCAGGACTACA 61.009 66.667 0.00 0.00 0.00 2.74
371 372 2.689034 AGGCAGGCCCAGGACTAC 60.689 66.667 6.70 0.00 36.58 2.73
372 373 2.688666 CAGGCAGGCCCAGGACTA 60.689 66.667 6.70 0.00 36.58 2.59
373 374 4.664267 TCAGGCAGGCCCAGGACT 62.664 66.667 6.70 0.00 36.58 3.85
374 375 4.106925 CTCAGGCAGGCCCAGGAC 62.107 72.222 6.70 0.00 36.58 3.85
391 392 0.521291 TGCAACATTGTAGCGAAGGC 59.479 50.000 0.00 0.00 40.37 4.35
392 393 2.532531 CTGCAACATTGTAGCGAAGG 57.467 50.000 0.00 0.00 34.26 3.46
398 399 4.737054 CTTTTAGGGCTGCAACATTGTAG 58.263 43.478 0.50 5.44 42.76 2.74
399 400 3.056891 GCTTTTAGGGCTGCAACATTGTA 60.057 43.478 0.50 0.00 0.00 2.41
400 401 2.289010 GCTTTTAGGGCTGCAACATTGT 60.289 45.455 0.50 0.00 0.00 2.71
401 402 2.288948 TGCTTTTAGGGCTGCAACATTG 60.289 45.455 0.50 0.00 32.12 2.82
402 403 1.969923 TGCTTTTAGGGCTGCAACATT 59.030 42.857 0.50 0.00 32.12 2.71
403 404 1.547372 CTGCTTTTAGGGCTGCAACAT 59.453 47.619 0.50 0.00 34.90 2.71
404 405 0.961019 CTGCTTTTAGGGCTGCAACA 59.039 50.000 0.50 0.00 34.90 3.33
405 406 1.200948 CTCTGCTTTTAGGGCTGCAAC 59.799 52.381 0.50 0.00 34.90 4.17
406 407 1.538047 CTCTGCTTTTAGGGCTGCAA 58.462 50.000 0.50 0.00 34.90 4.08
407 408 0.962356 GCTCTGCTTTTAGGGCTGCA 60.962 55.000 0.50 0.00 41.05 4.41
408 409 1.661498 GGCTCTGCTTTTAGGGCTGC 61.661 60.000 0.00 0.00 43.77 5.25
409 410 1.034292 GGGCTCTGCTTTTAGGGCTG 61.034 60.000 0.00 0.00 43.77 4.85
410 411 1.304617 GGGCTCTGCTTTTAGGGCT 59.695 57.895 0.00 0.00 43.77 5.19
411 412 1.754621 GGGGCTCTGCTTTTAGGGC 60.755 63.158 0.00 0.00 43.56 5.19
412 413 0.332972 AAGGGGCTCTGCTTTTAGGG 59.667 55.000 0.00 0.00 0.00 3.53
413 414 1.821136 CAAAGGGGCTCTGCTTTTAGG 59.179 52.381 0.00 0.00 0.00 2.69
414 415 1.203287 GCAAAGGGGCTCTGCTTTTAG 59.797 52.381 0.00 0.00 33.20 1.85
415 416 1.256812 GCAAAGGGGCTCTGCTTTTA 58.743 50.000 0.00 0.00 33.20 1.52
416 417 0.760189 TGCAAAGGGGCTCTGCTTTT 60.760 50.000 0.03 0.00 37.00 2.27
417 418 0.543646 ATGCAAAGGGGCTCTGCTTT 60.544 50.000 0.03 0.00 37.00 3.51
418 419 0.969409 GATGCAAAGGGGCTCTGCTT 60.969 55.000 0.03 0.00 37.00 3.91
419 420 1.379576 GATGCAAAGGGGCTCTGCT 60.380 57.895 0.03 0.00 37.00 4.24
420 421 1.041447 ATGATGCAAAGGGGCTCTGC 61.041 55.000 0.00 0.00 36.60 4.26
421 422 1.030457 GATGATGCAAAGGGGCTCTG 58.970 55.000 0.00 0.00 34.04 3.35
422 423 0.627451 TGATGATGCAAAGGGGCTCT 59.373 50.000 0.00 0.00 34.04 4.09
423 424 0.743097 GTGATGATGCAAAGGGGCTC 59.257 55.000 0.00 0.00 34.04 4.70
424 425 1.033746 CGTGATGATGCAAAGGGGCT 61.034 55.000 0.00 0.00 34.04 5.19
425 426 1.434696 CGTGATGATGCAAAGGGGC 59.565 57.895 0.00 0.00 0.00 5.80
426 427 0.680921 ACCGTGATGATGCAAAGGGG 60.681 55.000 0.00 0.00 0.00 4.79
427 428 0.452987 CACCGTGATGATGCAAAGGG 59.547 55.000 0.00 0.00 0.00 3.95
428 429 1.131126 GACACCGTGATGATGCAAAGG 59.869 52.381 5.28 0.00 0.00 3.11
429 430 1.131126 GGACACCGTGATGATGCAAAG 59.869 52.381 5.28 0.00 0.00 2.77
430 431 1.164411 GGACACCGTGATGATGCAAA 58.836 50.000 5.28 0.00 0.00 3.68
431 432 0.324614 AGGACACCGTGATGATGCAA 59.675 50.000 5.28 0.00 0.00 4.08
432 433 0.108186 GAGGACACCGTGATGATGCA 60.108 55.000 5.28 0.00 0.00 3.96
433 434 0.108186 TGAGGACACCGTGATGATGC 60.108 55.000 5.28 0.00 0.00 3.91
434 435 2.102084 AGATGAGGACACCGTGATGATG 59.898 50.000 5.28 0.00 0.00 3.07
435 436 2.392662 AGATGAGGACACCGTGATGAT 58.607 47.619 5.28 0.00 0.00 2.45
436 437 1.852633 AGATGAGGACACCGTGATGA 58.147 50.000 5.28 0.00 0.00 2.92
437 438 2.167281 AGAAGATGAGGACACCGTGATG 59.833 50.000 5.28 0.00 0.00 3.07
438 439 2.428890 GAGAAGATGAGGACACCGTGAT 59.571 50.000 5.28 0.00 0.00 3.06
439 440 1.819288 GAGAAGATGAGGACACCGTGA 59.181 52.381 5.28 0.00 0.00 4.35
440 441 1.134965 GGAGAAGATGAGGACACCGTG 60.135 57.143 0.00 0.00 0.00 4.94
441 442 1.187087 GGAGAAGATGAGGACACCGT 58.813 55.000 0.00 0.00 0.00 4.83
442 443 0.461961 GGGAGAAGATGAGGACACCG 59.538 60.000 0.00 0.00 0.00 4.94
443 444 1.760029 GAGGGAGAAGATGAGGACACC 59.240 57.143 0.00 0.00 0.00 4.16
444 445 2.461695 TGAGGGAGAAGATGAGGACAC 58.538 52.381 0.00 0.00 0.00 3.67
445 446 2.928036 TGAGGGAGAAGATGAGGACA 57.072 50.000 0.00 0.00 0.00 4.02
446 447 2.632512 GGATGAGGGAGAAGATGAGGAC 59.367 54.545 0.00 0.00 0.00 3.85
447 448 2.248423 TGGATGAGGGAGAAGATGAGGA 59.752 50.000 0.00 0.00 0.00 3.71
448 449 2.687297 TGGATGAGGGAGAAGATGAGG 58.313 52.381 0.00 0.00 0.00 3.86
449 450 3.261390 GGATGGATGAGGGAGAAGATGAG 59.739 52.174 0.00 0.00 0.00 2.90
450 451 3.246301 GGATGGATGAGGGAGAAGATGA 58.754 50.000 0.00 0.00 0.00 2.92
451 452 2.305343 GGGATGGATGAGGGAGAAGATG 59.695 54.545 0.00 0.00 0.00 2.90
452 453 2.630232 GGGATGGATGAGGGAGAAGAT 58.370 52.381 0.00 0.00 0.00 2.40
453 454 1.415126 GGGGATGGATGAGGGAGAAGA 60.415 57.143 0.00 0.00 0.00 2.87
454 455 1.063183 GGGGATGGATGAGGGAGAAG 58.937 60.000 0.00 0.00 0.00 2.85
455 456 0.649992 AGGGGATGGATGAGGGAGAA 59.350 55.000 0.00 0.00 0.00 2.87
456 457 0.649992 AAGGGGATGGATGAGGGAGA 59.350 55.000 0.00 0.00 0.00 3.71
457 458 1.063183 GAAGGGGATGGATGAGGGAG 58.937 60.000 0.00 0.00 0.00 4.30
458 459 0.401979 GGAAGGGGATGGATGAGGGA 60.402 60.000 0.00 0.00 0.00 4.20
459 460 0.402566 AGGAAGGGGATGGATGAGGG 60.403 60.000 0.00 0.00 0.00 4.30
460 461 2.264455 CTAGGAAGGGGATGGATGAGG 58.736 57.143 0.00 0.00 0.00 3.86
461 462 2.903135 GACTAGGAAGGGGATGGATGAG 59.097 54.545 0.00 0.00 0.00 2.90
462 463 2.250008 TGACTAGGAAGGGGATGGATGA 59.750 50.000 0.00 0.00 0.00 2.92
463 464 2.370189 GTGACTAGGAAGGGGATGGATG 59.630 54.545 0.00 0.00 0.00 3.51
464 465 2.695585 GTGACTAGGAAGGGGATGGAT 58.304 52.381 0.00 0.00 0.00 3.41
465 466 1.344087 GGTGACTAGGAAGGGGATGGA 60.344 57.143 0.00 0.00 0.00 3.41
466 467 1.132500 GGTGACTAGGAAGGGGATGG 58.868 60.000 0.00 0.00 0.00 3.51
467 468 2.182516 AGGTGACTAGGAAGGGGATG 57.817 55.000 0.00 0.00 40.61 3.51
468 469 2.319438 AGAAGGTGACTAGGAAGGGGAT 59.681 50.000 0.00 0.00 42.68 3.85
469 470 1.722851 AGAAGGTGACTAGGAAGGGGA 59.277 52.381 0.00 0.00 42.68 4.81
470 471 2.255770 AGAAGGTGACTAGGAAGGGG 57.744 55.000 0.00 0.00 42.68 4.79
471 472 4.202472 ACAAAAGAAGGTGACTAGGAAGGG 60.202 45.833 0.00 0.00 42.68 3.95
472 473 4.757149 CACAAAAGAAGGTGACTAGGAAGG 59.243 45.833 0.00 0.00 42.68 3.46
473 474 4.757149 CCACAAAAGAAGGTGACTAGGAAG 59.243 45.833 0.00 0.00 42.68 3.46
474 475 4.714632 CCACAAAAGAAGGTGACTAGGAA 58.285 43.478 0.00 0.00 42.68 3.36
475 476 3.496160 GCCACAAAAGAAGGTGACTAGGA 60.496 47.826 0.00 0.00 42.68 2.94
476 477 2.814336 GCCACAAAAGAAGGTGACTAGG 59.186 50.000 0.00 0.00 42.68 3.02
477 478 2.814336 GGCCACAAAAGAAGGTGACTAG 59.186 50.000 0.00 0.00 42.68 2.57
478 479 2.173782 TGGCCACAAAAGAAGGTGACTA 59.826 45.455 0.00 0.00 42.68 2.59
480 481 1.067060 GTGGCCACAAAAGAAGGTGAC 59.933 52.381 31.23 0.00 37.18 3.67
481 482 1.398692 GTGGCCACAAAAGAAGGTGA 58.601 50.000 31.23 0.00 37.18 4.02
482 483 0.030638 CGTGGCCACAAAAGAAGGTG 59.969 55.000 34.16 11.04 34.82 4.00
483 484 0.106918 TCGTGGCCACAAAAGAAGGT 60.107 50.000 34.16 0.00 0.00 3.50
484 485 0.593128 CTCGTGGCCACAAAAGAAGG 59.407 55.000 34.16 16.05 0.00 3.46
485 486 0.040067 GCTCGTGGCCACAAAAGAAG 60.040 55.000 34.16 20.26 34.27 2.85
486 487 0.465460 AGCTCGTGGCCACAAAAGAA 60.465 50.000 34.16 11.60 43.05 2.52
487 488 1.148273 AGCTCGTGGCCACAAAAGA 59.852 52.632 34.16 21.73 43.05 2.52
488 489 1.283793 CAGCTCGTGGCCACAAAAG 59.716 57.895 34.16 26.42 43.05 2.27
489 490 2.192861 CCAGCTCGTGGCCACAAAA 61.193 57.895 34.16 18.25 40.39 2.44
490 491 2.594303 CCAGCTCGTGGCCACAAA 60.594 61.111 34.16 20.78 40.39 2.83
498 499 4.240888 CCTATCATTATCACCAGCTCGTG 58.759 47.826 4.93 4.93 34.93 4.35
499 500 3.306364 GCCTATCATTATCACCAGCTCGT 60.306 47.826 0.00 0.00 0.00 4.18
500 501 3.257393 GCCTATCATTATCACCAGCTCG 58.743 50.000 0.00 0.00 0.00 5.03
501 502 3.008375 TGGCCTATCATTATCACCAGCTC 59.992 47.826 3.32 0.00 0.00 4.09
502 503 2.981784 TGGCCTATCATTATCACCAGCT 59.018 45.455 3.32 0.00 0.00 4.24
503 504 3.077359 GTGGCCTATCATTATCACCAGC 58.923 50.000 3.32 0.00 0.00 4.85
504 505 4.356405 TGTGGCCTATCATTATCACCAG 57.644 45.455 3.32 0.00 0.00 4.00
505 506 4.446167 CCTTGTGGCCTATCATTATCACCA 60.446 45.833 3.32 0.00 0.00 4.17
506 507 4.074970 CCTTGTGGCCTATCATTATCACC 58.925 47.826 3.32 0.00 0.00 4.02
507 508 4.074970 CCCTTGTGGCCTATCATTATCAC 58.925 47.826 3.32 0.00 0.00 3.06
508 509 3.074390 CCCCTTGTGGCCTATCATTATCA 59.926 47.826 3.32 0.00 0.00 2.15
509 510 3.330701 TCCCCTTGTGGCCTATCATTATC 59.669 47.826 3.32 0.00 0.00 1.75
510 511 3.335748 TCCCCTTGTGGCCTATCATTAT 58.664 45.455 3.32 0.00 0.00 1.28
511 512 2.782922 TCCCCTTGTGGCCTATCATTA 58.217 47.619 3.32 0.00 0.00 1.90
512 513 1.607225 TCCCCTTGTGGCCTATCATT 58.393 50.000 3.32 0.00 0.00 2.57
513 514 1.607225 TTCCCCTTGTGGCCTATCAT 58.393 50.000 3.32 0.00 0.00 2.45
514 515 1.607225 ATTCCCCTTGTGGCCTATCA 58.393 50.000 3.32 0.00 0.00 2.15
515 516 3.756117 CTTATTCCCCTTGTGGCCTATC 58.244 50.000 3.32 0.00 0.00 2.08
516 517 2.158460 GCTTATTCCCCTTGTGGCCTAT 60.158 50.000 3.32 0.00 0.00 2.57
517 518 1.214424 GCTTATTCCCCTTGTGGCCTA 59.786 52.381 3.32 0.00 0.00 3.93
518 519 0.033109 GCTTATTCCCCTTGTGGCCT 60.033 55.000 3.32 0.00 0.00 5.19
519 520 1.043116 GGCTTATTCCCCTTGTGGCC 61.043 60.000 0.00 0.00 0.00 5.36
520 521 0.033109 AGGCTTATTCCCCTTGTGGC 60.033 55.000 0.00 0.00 0.00 5.01
521 522 2.777692 TCTAGGCTTATTCCCCTTGTGG 59.222 50.000 0.00 0.00 32.65 4.17
522 523 4.141390 ACATCTAGGCTTATTCCCCTTGTG 60.141 45.833 0.00 0.00 32.65 3.33
523 524 4.047883 ACATCTAGGCTTATTCCCCTTGT 58.952 43.478 0.00 0.00 32.65 3.16
524 525 4.713792 ACATCTAGGCTTATTCCCCTTG 57.286 45.455 0.00 0.00 32.65 3.61
525 526 4.846940 CCTACATCTAGGCTTATTCCCCTT 59.153 45.833 0.00 0.00 33.12 3.95
526 527 4.140423 ACCTACATCTAGGCTTATTCCCCT 60.140 45.833 0.00 0.00 43.42 4.79
527 528 4.168883 ACCTACATCTAGGCTTATTCCCC 58.831 47.826 0.00 0.00 43.42 4.81
528 529 5.827326 AACCTACATCTAGGCTTATTCCC 57.173 43.478 0.00 0.00 43.42 3.97
534 535 7.715686 GCACTTATAAAACCTACATCTAGGCTT 59.284 37.037 0.00 0.00 43.42 4.35
535 536 7.147549 TGCACTTATAAAACCTACATCTAGGCT 60.148 37.037 0.00 0.00 43.42 4.58
536 537 6.990349 TGCACTTATAAAACCTACATCTAGGC 59.010 38.462 0.00 0.00 43.42 3.93
537 538 7.171678 GCTGCACTTATAAAACCTACATCTAGG 59.828 40.741 0.00 0.00 44.99 3.02
538 539 7.171678 GGCTGCACTTATAAAACCTACATCTAG 59.828 40.741 0.50 0.00 0.00 2.43
539 540 6.990349 GGCTGCACTTATAAAACCTACATCTA 59.010 38.462 0.50 0.00 0.00 1.98
540 541 5.823045 GGCTGCACTTATAAAACCTACATCT 59.177 40.000 0.50 0.00 0.00 2.90
541 542 5.008712 GGGCTGCACTTATAAAACCTACATC 59.991 44.000 0.50 0.00 0.00 3.06
542 543 4.887655 GGGCTGCACTTATAAAACCTACAT 59.112 41.667 0.50 0.00 0.00 2.29
543 544 4.266714 GGGCTGCACTTATAAAACCTACA 58.733 43.478 0.50 0.00 0.00 2.74
544 545 3.630769 GGGGCTGCACTTATAAAACCTAC 59.369 47.826 0.21 0.00 0.00 3.18
545 546 3.526019 AGGGGCTGCACTTATAAAACCTA 59.474 43.478 0.21 0.00 0.00 3.08
546 547 2.311841 AGGGGCTGCACTTATAAAACCT 59.688 45.455 0.21 0.00 0.00 3.50
547 548 2.735151 AGGGGCTGCACTTATAAAACC 58.265 47.619 0.21 0.00 0.00 3.27
548 549 8.101419 AGTATATAGGGGCTGCACTTATAAAAC 58.899 37.037 16.32 16.05 0.00 2.43
549 550 8.214721 AGTATATAGGGGCTGCACTTATAAAA 57.785 34.615 16.32 6.60 0.00 1.52
550 551 7.808279 AGTATATAGGGGCTGCACTTATAAA 57.192 36.000 16.32 0.00 0.00 1.40
551 552 8.120538 ACTAGTATATAGGGGCTGCACTTATAA 58.879 37.037 16.32 5.21 0.00 0.98
552 553 7.560262 CACTAGTATATAGGGGCTGCACTTATA 59.440 40.741 14.98 14.98 0.00 0.98
553 554 6.381420 CACTAGTATATAGGGGCTGCACTTAT 59.619 42.308 11.45 11.45 0.00 1.73
554 555 5.715279 CACTAGTATATAGGGGCTGCACTTA 59.285 44.000 0.21 0.00 0.00 2.24
555 556 4.528596 CACTAGTATATAGGGGCTGCACTT 59.471 45.833 0.21 0.00 0.00 3.16
556 557 4.090090 CACTAGTATATAGGGGCTGCACT 58.910 47.826 0.21 1.16 0.00 4.40
557 558 3.195825 CCACTAGTATATAGGGGCTGCAC 59.804 52.174 0.50 0.00 30.41 4.57
558 559 3.181410 ACCACTAGTATATAGGGGCTGCA 60.181 47.826 0.50 0.00 41.80 4.41
559 560 3.442076 ACCACTAGTATATAGGGGCTGC 58.558 50.000 3.05 0.00 41.80 5.25
560 561 4.223032 CCAACCACTAGTATATAGGGGCTG 59.777 50.000 3.05 1.67 41.80 4.85
561 562 4.109106 TCCAACCACTAGTATATAGGGGCT 59.891 45.833 3.05 0.00 41.80 5.19
562 563 4.422984 TCCAACCACTAGTATATAGGGGC 58.577 47.826 3.05 0.00 41.80 5.80
563 564 5.024118 CCTCCAACCACTAGTATATAGGGG 58.976 50.000 0.00 1.56 43.66 4.79
564 565 4.466726 GCCTCCAACCACTAGTATATAGGG 59.533 50.000 0.00 0.00 0.00 3.53
565 566 4.466726 GGCCTCCAACCACTAGTATATAGG 59.533 50.000 0.00 0.00 0.00 2.57
585 586 3.957535 CGATCTGCAATGGCGGCC 61.958 66.667 13.32 13.32 46.35 6.13
597 598 2.564947 ACAACTTCCTCTCAAGCGATCT 59.435 45.455 0.00 0.00 0.00 2.75
598 599 2.670414 CACAACTTCCTCTCAAGCGATC 59.330 50.000 0.00 0.00 0.00 3.69
615 616 1.077357 AAGGAACCCACGCACACAA 60.077 52.632 0.00 0.00 0.00 3.33
652 653 4.417426 AACTTTGAGACGAAGGGAAGAA 57.583 40.909 0.00 0.00 0.00 2.52
654 655 4.021368 TCCTAACTTTGAGACGAAGGGAAG 60.021 45.833 0.00 0.00 0.00 3.46
890 914 1.066257 CAGCCATGCCCATTAACGC 59.934 57.895 0.00 0.00 0.00 4.84
891 915 1.102154 TTCAGCCATGCCCATTAACG 58.898 50.000 0.00 0.00 0.00 3.18
892 916 1.136891 GGTTCAGCCATGCCCATTAAC 59.863 52.381 0.00 0.00 37.17 2.01
893 917 1.484038 GGTTCAGCCATGCCCATTAA 58.516 50.000 0.00 0.00 37.17 1.40
894 918 0.751277 CGGTTCAGCCATGCCCATTA 60.751 55.000 0.00 0.00 36.97 1.90
895 919 2.053865 CGGTTCAGCCATGCCCATT 61.054 57.895 0.00 0.00 36.97 3.16
896 920 2.440796 CGGTTCAGCCATGCCCAT 60.441 61.111 0.00 0.00 36.97 4.00
899 923 3.818787 CAGCGGTTCAGCCATGCC 61.819 66.667 0.00 0.00 38.01 4.40
900 924 2.262471 CTTCAGCGGTTCAGCCATGC 62.262 60.000 0.00 0.00 38.01 4.06
984 1008 1.827969 ACCATGGTGACTAGAGTCTGC 59.172 52.381 18.99 4.23 44.99 4.26
1355 1379 2.645163 CGATAGCAAGCTAGACGTGAG 58.355 52.381 17.10 0.00 32.28 3.51
1437 1490 5.105392 AGTGAACCATTCTTCTGCAAAACAA 60.105 36.000 0.00 0.00 0.00 2.83
1439 1492 4.741676 CAGTGAACCATTCTTCTGCAAAAC 59.258 41.667 0.00 0.00 0.00 2.43
1511 1565 6.207691 AGTGTACAAGCAAAGAACAATTGT 57.792 33.333 4.92 4.92 37.77 2.71
1536 1590 2.450476 ACAATTGCCAGATCTGAACCC 58.550 47.619 24.62 9.57 0.00 4.11
1653 1708 8.614994 ACGCAAATGTAAATTCTTAGCATTAC 57.385 30.769 0.00 0.00 0.00 1.89
1675 1730 6.542852 TCTCAATATTAAAAGCAACTGACGC 58.457 36.000 0.00 0.00 0.00 5.19
1943 2001 5.044550 AGGGCTCCAAACTATTGAGAAGAAT 60.045 40.000 0.00 0.00 38.94 2.40
2028 2087 4.036380 GCTTTACTTGTGTAGTTGCCTTGT 59.964 41.667 0.00 0.00 38.33 3.16
2139 2205 2.583024 TGAGATCAACATGGGCACAA 57.417 45.000 0.00 0.00 0.00 3.33
2252 2318 3.390521 TGCATTCGCTCTCCCCGT 61.391 61.111 0.00 0.00 39.64 5.28
2277 2343 1.611261 TGGGTTCAGGTAGACGGGG 60.611 63.158 0.00 0.00 0.00 5.73
2349 2415 3.903783 GCACCTGGCTTGCGATTA 58.096 55.556 0.00 0.00 40.25 1.75
2379 2445 1.447489 CTGCTCAAGCTCACTCCCG 60.447 63.158 3.32 0.00 42.66 5.14
2541 2609 8.279970 ACATTTAGCTGATTGTATGTAGCAAA 57.720 30.769 4.38 0.00 38.59 3.68
2702 2849 7.349859 AGGACTAGGGAATTGGTGTATTCATAA 59.650 37.037 0.00 0.00 36.46 1.90
2768 2915 2.496871 GGATGGATGCAAATGACACCAA 59.503 45.455 0.00 0.00 0.00 3.67
2774 2921 3.483421 CTGCTAGGATGGATGCAAATGA 58.517 45.455 0.00 0.00 34.90 2.57
2775 2922 2.557056 CCTGCTAGGATGGATGCAAATG 59.443 50.000 0.00 0.00 37.67 2.32
2840 2987 8.758715 GCATTGTTTCTTATGGAATTAATGAGC 58.241 33.333 15.51 0.00 38.47 4.26
2888 3038 2.228822 CCATAACCAGTTCACCAGCAAC 59.771 50.000 0.00 0.00 0.00 4.17
2890 3040 1.886222 GCCATAACCAGTTCACCAGCA 60.886 52.381 0.00 0.00 0.00 4.41
2928 3078 5.854866 GTGCATCAATTATCCGAATCATGTG 59.145 40.000 0.00 0.00 0.00 3.21
2938 3088 5.779529 AGAACCATGTGCATCAATTATCC 57.220 39.130 0.00 0.00 0.00 2.59
3005 3155 0.912487 TCCCAAGCAACCGGATACCT 60.912 55.000 9.46 0.00 0.00 3.08
3008 3158 0.391927 CGTTCCCAAGCAACCGGATA 60.392 55.000 9.46 0.00 0.00 2.59
3009 3159 1.674322 CGTTCCCAAGCAACCGGAT 60.674 57.895 9.46 0.00 0.00 4.18
3011 3161 1.894756 TTCGTTCCCAAGCAACCGG 60.895 57.895 0.00 0.00 0.00 5.28
3060 3213 3.260884 GTGAATGAGGGTTGTGAGGAGTA 59.739 47.826 0.00 0.00 0.00 2.59
3070 3223 2.291605 GGCCTTAAGGTGAATGAGGGTT 60.292 50.000 22.55 0.00 37.57 4.11
3071 3224 1.285078 GGCCTTAAGGTGAATGAGGGT 59.715 52.381 22.55 0.00 37.57 4.34
3072 3225 1.747206 CGGCCTTAAGGTGAATGAGGG 60.747 57.143 22.55 0.00 37.57 4.30
3073 3226 1.209504 TCGGCCTTAAGGTGAATGAGG 59.790 52.381 22.55 4.11 37.57 3.86
3075 3228 1.906574 AGTCGGCCTTAAGGTGAATGA 59.093 47.619 22.55 10.54 37.57 2.57
3084 3240 2.922740 AGTGTTGAAGTCGGCCTTAA 57.077 45.000 0.00 0.00 32.03 1.85
3092 3248 3.764237 TTGGGGTCTAGTGTTGAAGTC 57.236 47.619 0.00 0.00 0.00 3.01
3114 3271 2.562635 TCCGAACAAAATGGACGTTCA 58.437 42.857 0.00 0.00 39.16 3.18
3115 3272 3.824414 ATCCGAACAAAATGGACGTTC 57.176 42.857 0.00 0.00 36.51 3.95
3116 3273 4.577834 AAATCCGAACAAAATGGACGTT 57.422 36.364 0.00 0.00 33.91 3.99
3118 3275 4.295051 ACAAAATCCGAACAAAATGGACG 58.705 39.130 0.00 0.00 33.91 4.79
3150 3307 0.316689 GCGTGTGTCCGTTTTTCTGG 60.317 55.000 0.00 0.00 0.00 3.86
3279 3438 9.226606 CCTTAAGACTTTGTGGACATTTATGTA 57.773 33.333 3.36 0.00 41.95 2.29
3281 3440 7.029563 GCCTTAAGACTTTGTGGACATTTATG 58.970 38.462 3.36 0.00 0.00 1.90
3283 3442 5.475564 GGCCTTAAGACTTTGTGGACATTTA 59.524 40.000 3.36 0.00 0.00 1.40
3286 3445 3.421844 GGCCTTAAGACTTTGTGGACAT 58.578 45.455 3.36 0.00 0.00 3.06
3287 3446 2.808933 CGGCCTTAAGACTTTGTGGACA 60.809 50.000 3.36 0.00 0.00 4.02
3307 3466 6.991485 ATTTCAGTTTAGTTTGAATGTGCG 57.009 33.333 0.00 0.00 33.68 5.34
3367 3535 2.868999 GAAGACGAAGACGGAGGCGG 62.869 65.000 0.00 0.00 44.46 6.13
3370 3538 1.669211 GGTTGAAGACGAAGACGGAGG 60.669 57.143 0.00 0.00 44.46 4.30
3371 3539 1.699343 GGTTGAAGACGAAGACGGAG 58.301 55.000 0.00 0.00 44.46 4.63
3372 3540 0.039798 CGGTTGAAGACGAAGACGGA 60.040 55.000 0.00 0.00 44.46 4.69
3378 3546 3.039588 GCGGCGGTTGAAGACGAA 61.040 61.111 9.78 0.00 44.04 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.