AutoCloner

Multiple sequence alignment - TraesCS6D01G314000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G314000	chr6D	100.000	2877	0	0	1	2877	422600498	422603374	0.000000e+00	5313.0
1	TraesCS6D01G314000	chr6D	89.593	1989	110	43	444	2415	422215057	422216965	0.000000e+00	2436.0
2	TraesCS6D01G314000	chr6D	86.737	1998	183	50	751	2694	421661766	421663735	0.000000e+00	2146.0
3	TraesCS6D01G314000	chr6D	86.680	1997	187	49	751	2694	421679739	421681709	0.000000e+00	2141.0
4	TraesCS6D01G314000	chr6D	85.920	2010	194	55	752	2700	421468032	421466051	0.000000e+00	2061.0
5	TraesCS6D01G314000	chr6D	86.183	1983	183	47	785	2700	420970352	420968394	0.000000e+00	2060.0
6	TraesCS6D01G314000	chr6D	90.523	1129	69	18	751	1858	421689094	421690205	0.000000e+00	1458.0
7	TraesCS6D01G314000	chr6D	92.180	601	29	10	40	627	421688416	421689011	0.000000e+00	833.0
8	TraesCS6D01G314000	chr6D	91.847	601	31	12	40	627	421679077	421679672	0.000000e+00	822.0
9	TraesCS6D01G314000	chr6D	92.632	475	25	6	158	627	421661214	421661683	0.000000e+00	675.0
10	TraesCS6D01G314000	chr6D	93.647	425	15	5	1	424	422214651	422215064	2.430000e-175	625.0
11	TraesCS6D01G314000	chr6D	87.975	474	49	5	2409	2877	422216989	422217459	1.160000e-153	553.0
12	TraesCS6D01G314000	chr6D	88.043	276	18	6	1	271	420971334	420971069	2.150000e-81	313.0
13	TraesCS6D01G314000	chr6D	91.018	167	12	3	470	635	421468282	421468118	3.730000e-54	222.0
14	TraesCS6D01G314000	chr6D	91.200	125	7	4	40	162	421652105	421652227	1.770000e-37	167.0
15	TraesCS6D01G314000	chr6A	91.382	2170	138	19	718	2876	565340302	565342433	0.000000e+00	2926.0
16	TraesCS6D01G314000	chr6A	85.963	1952	174	52	391	2286	564279266	564277359	0.000000e+00	1995.0
17	TraesCS6D01G314000	chr6A	90.201	398	25	7	1	395	565317409	565317795	9.200000e-140	507.0
18	TraesCS6D01G314000	chr6A	89.431	246	18	4	30	271	564279518	564279277	1.300000e-78	303.0
19	TraesCS6D01G314000	chr6A	84.953	319	15	8	386	696	565340013	565340306	2.800000e-75	292.0
20	TraesCS6D01G314000	chr6A	86.047	86	12	0	2161	2246	490473341	490473256	3.050000e-15	93.5
21	TraesCS6D01G314000	chr6B	91.499	1988	150	9	902	2876	636746225	636748206	0.000000e+00	2717.0
22	TraesCS6D01G314000	chr6B	84.967	1683	164	44	470	2104	634504295	634502654	0.000000e+00	1624.0
23	TraesCS6D01G314000	chr6B	93.091	275	13	4	1	275	636744070	636744338	5.780000e-107	398.0
24	TraesCS6D01G314000	chr6B	88.168	262	13	7	591	850	636745040	636745285	2.170000e-76	296.0
25	TraesCS6D01G314000	chr6B	89.431	123	7	3	485	601	636744399	636744521	1.790000e-32	150.0
26	TraesCS6D01G314000	chr6B	89.855	69	5	1	2	70	634560267	634560201	1.420000e-13	87.9
27	TraesCS6D01G314000	chr3B	82.024	573	86	11	1381	1940	70875183	70875751	3.360000e-129	472.0
28	TraesCS6D01G314000	chr4B	83.871	124	20	0	2254	2377	535426941	535426818	5.040000e-23	119.0
29	TraesCS6D01G314000	chr7A	87.302	63	7	1	2315	2377	272531187	272531126	1.430000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G314000	chr6D	422600498	422603374	2876	False	5313.000000	5313	100.00000	1	2877	1	chr6D.!!$F2	2876
1	TraesCS6D01G314000	chr6D	421679077	421681709	2632	False	1481.500000	2141	89.26350	40	2694	2	chr6D.!!$F4	2654
2	TraesCS6D01G314000	chr6D	421661214	421663735	2521	False	1410.500000	2146	89.68450	158	2694	2	chr6D.!!$F3	2536
3	TraesCS6D01G314000	chr6D	422214651	422217459	2808	False	1204.666667	2436	90.40500	1	2877	3	chr6D.!!$F6	2876
4	TraesCS6D01G314000	chr6D	420968394	420971334	2940	True	1186.500000	2060	87.11300	1	2700	2	chr6D.!!$R1	2699
5	TraesCS6D01G314000	chr6D	421688416	421690205	1789	False	1145.500000	1458	91.35150	40	1858	2	chr6D.!!$F5	1818
6	TraesCS6D01G314000	chr6D	421466051	421468282	2231	True	1141.500000	2061	88.46900	470	2700	2	chr6D.!!$R2	2230
7	TraesCS6D01G314000	chr6A	565340013	565342433	2420	False	1609.000000	2926	88.16750	386	2876	2	chr6A.!!$F2	2490
8	TraesCS6D01G314000	chr6A	564277359	564279518	2159	True	1149.000000	1995	87.69700	30	2286	2	chr6A.!!$R2	2256
9	TraesCS6D01G314000	chr6B	634502654	634504295	1641	True	1624.000000	1624	84.96700	470	2104	1	chr6B.!!$R1	1634
10	TraesCS6D01G314000	chr6B	636744070	636748206	4136	False	890.250000	2717	90.54725	1	2876	4	chr6B.!!$F1	2875
11	TraesCS6D01G314000	chr3B	70875183	70875751	568	False	472.000000	472	82.02400	1381	1940	1	chr3B.!!$F1	559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
417	638	0.1792	GTTCGCCAGGCACGTAAATG	60.179	55.0	13.3	0.0	0.0	2.32	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1990	3855	0.393944	ACGGATGGAGCTCGACTACA	60.394	55.0	7.83	0.0	45.8	2.74	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	1.225704	CCCATCAGCAGGAACCTCC	59.774	63.158	0.00	0.00	36.58	4.30
34	35	0.905337	CCTCCTGAACCGGGAAGAGT	60.905	60.000	6.32	0.00	38.58	3.24
106	107	4.262377	CCAAGTTTCTCTCTCTGCTTCTCA	60.262	45.833	0.00	0.00	0.00	3.27
187	201	1.536766	TGTTCTTCAAATGCTGAGGCG	59.463	47.619	0.00	0.00	42.25	5.52
268	282	2.754472	GTTTCATTGTTGGAACCTGGC	58.246	47.619	0.00	0.00	35.59	4.85
269	283	1.337118	TTCATTGTTGGAACCTGGCC	58.663	50.000	0.00	0.00	0.00	5.36
270	284	0.893270	TCATTGTTGGAACCTGGCCG	60.893	55.000	0.00	0.00	0.00	6.13
271	285	1.606313	ATTGTTGGAACCTGGCCGG	60.606	57.895	3.88	3.88	39.35	6.13
290	304	4.640855	CGTCGTGCCGTCCACTGT	62.641	66.667	2.59	0.00	42.42	3.55
298	312	0.249911	GCCGTCCACTGTTGTTCTCT	60.250	55.000	0.00	0.00	0.00	3.10
417	638	0.179200	GTTCGCCAGGCACGTAAATG	60.179	55.000	13.30	0.00	0.00	2.32
464	783	1.002659	AGCTGGTGTAATTACCACGCA	59.997	47.619	13.01	9.75	45.46	5.24
582	929	3.376914	GAAACCGAATCCCGTGCGC	62.377	63.158	0.00	0.00	36.31	6.09
631	1514	4.761910	TTCGTATCGAGTGAGTACGTAC	57.238	45.455	18.10	18.10	41.26	3.67
683	1572	7.120285	GGCTCCGTCTATATATACACACACTAA	59.880	40.741	0.00	0.00	0.00	2.24
702	1591	1.952621	AGGGAAGGTACTAGCTGCAA	58.047	50.000	1.02	0.00	38.49	4.08
703	1592	2.266279	AGGGAAGGTACTAGCTGCAAA	58.734	47.619	1.02	0.00	38.49	3.68
708	1597	2.704572	AGGTACTAGCTGCAAAGCAAG	58.295	47.619	1.02	0.00	35.19	4.01
711	1600	2.557920	ACTAGCTGCAAAGCAAGACT	57.442	45.000	1.02	0.00	38.41	3.24
713	1602	3.330267	ACTAGCTGCAAAGCAAGACTAC	58.670	45.455	1.02	0.00	38.41	2.73
714	1603	2.557920	AGCTGCAAAGCAAGACTACT	57.442	45.000	1.02	0.00	38.41	2.57
715	1604	3.685139	AGCTGCAAAGCAAGACTACTA	57.315	42.857	1.02	0.00	38.41	1.82
716	1605	3.330267	AGCTGCAAAGCAAGACTACTAC	58.670	45.455	1.02	0.00	38.41	2.73
835	1740	1.676968	CTCACCCAATCCGTCACCA	59.323	57.895	0.00	0.00	0.00	4.17
864	2679	7.383687	TCGGTACATATATAGGCCTCTTTTTG	58.616	38.462	9.68	5.90	0.00	2.44
876	2691	3.796844	GCCTCTTTTTGCAGTGTTCTTCC	60.797	47.826	0.00	0.00	0.00	3.46
894	2709	7.041030	TGTTCTTCCACGTTGATATTTTGCTTA	60.041	33.333	0.00	0.00	0.00	3.09
929	2744	7.897575	TTGCTTCTATCTGTTCTTCTTCTTC	57.102	36.000	0.00	0.00	0.00	2.87
1046	2861	1.080839	CAATGGCGGTTTTGTCGGG	60.081	57.895	0.00	0.00	0.00	5.14
1118	2946	1.600916	GGGCTTCAGTTTGTCGCCT	60.601	57.895	0.00	0.00	40.52	5.52
1133	2961	0.370273	CGCCTCCTTTGATTTCGACG	59.630	55.000	0.00	0.00	0.00	5.12
1138	2966	2.409975	TCCTTTGATTTCGACGGACAC	58.590	47.619	0.00	0.00	0.00	3.67
1184	3012	0.525761	TGCTTATTTTGCAGGGCGAC	59.474	50.000	0.00	0.00	35.31	5.19
1294	3122	4.081142	TGTCCATCGTGTGATCAAGGTAAT	60.081	41.667	0.00	0.00	30.49	1.89
1321	3154	4.662278	AGCCCTCTAGTATCTCTTGCTAG	58.338	47.826	0.00	0.00	40.81	3.42
1374	3207	7.712264	TGTCATATTTTGTTTGCCTTGAAAG	57.288	32.000	0.00	0.00	0.00	2.62
1438	3279	4.041740	TGGAGAAATCCGAATACTCACG	57.958	45.455	0.00	0.00	0.00	4.35
1443	3284	5.962433	AGAAATCCGAATACTCACGAAAGA	58.038	37.500	0.00	0.00	0.00	2.52
1482	3323	3.793797	TGACCGATTTCTCTATGCGAA	57.206	42.857	0.00	0.00	0.00	4.70
1486	3327	2.543031	CCGATTTCTCTATGCGAACGGA	60.543	50.000	0.00	0.00	40.16	4.69
1510	3351	1.000385	CTTTGGCTTCAACCGCATGAA	60.000	47.619	0.00	1.85	37.70	2.57
1871	3727	7.125792	ACTCCAGAAGTATATTGGGTAACAG	57.874	40.000	0.00	0.00	36.07	3.16
1883	3739	0.319813	GGTAACAGTGTAACCGCGGT	60.320	55.000	28.70	28.70	37.80	5.68
1940	3796	4.677182	AGGGGTTAAAGAATGCATCAAGT	58.323	39.130	0.00	0.00	0.00	3.16
1990	3855	6.524734	TCATTATCATAGTCTCCGCAACATT	58.475	36.000	0.00	0.00	0.00	2.71
1994	3859	4.682787	TCATAGTCTCCGCAACATTGTAG	58.317	43.478	0.00	0.00	0.00	2.74
2074	3941	1.214367	TCGAGAACACGCAAAAGTCC	58.786	50.000	0.00	0.00	0.00	3.85
2084	3951	4.213482	ACACGCAAAAGTCCTACATTTCTC	59.787	41.667	0.00	0.00	0.00	2.87
2151	4021	7.197071	TGGTGAAACATGTTGTTAGATGTAC	57.803	36.000	12.82	1.65	40.14	2.90
2232	4108	6.489700	TGGATACAGAAACAATGAACACACAT	59.510	34.615	0.00	0.00	46.17	3.21
2233	4109	7.023575	GGATACAGAAACAATGAACACACATC	58.976	38.462	0.00	0.00	0.00	3.06
2304	4183	4.486503	CCCTGGCCAGAGAGCAGC	62.487	72.222	34.91	0.00	0.00	5.25
2306	4185	2.062777	CCTGGCCAGAGAGCAGCTA	61.063	63.158	34.91	0.00	0.00	3.32
2334	4213	1.522569	GGACGTTGGATCTGAGGGG	59.477	63.158	0.00	0.00	0.00	4.79
2467	4380	2.829003	CTCTAGGAGTGGCGGCGA	60.829	66.667	12.98	0.00	0.00	5.54
2483	4396	3.878519	GACCTCCGGAGTCGCTCG	61.879	72.222	29.25	15.46	34.56	5.03
2537	4467	2.722094	TGGGAGGCAATTCACATGTAC	58.278	47.619	0.00	0.00	0.00	2.90
2545	4475	3.747193	CAATTCACATGTACAGCGGAAC	58.253	45.455	0.00	0.00	0.00	3.62
2547	4477	2.535012	TCACATGTACAGCGGAACAA	57.465	45.000	0.00	0.00	0.00	2.83
2662	4602	9.355916	ACTTTAGAAGCCTTAAGACAAATCTTT	57.644	29.630	3.36	0.00	42.91	2.52
2701	4641	3.944015	GCCTACATCAAATCAGTCTTGCT	59.056	43.478	0.00	0.00	0.00	3.91
2704	4644	6.457528	GCCTACATCAAATCAGTCTTGCTTAC	60.458	42.308	0.00	0.00	0.00	2.34
2735	4676	8.682710	TGTGAGCAAATTTTAATATAGGACACC	58.317	33.333	0.00	0.00	0.00	4.16
2744	4685	8.865244	TTTTAATATAGGACACCCTTACCTCT	57.135	34.615	0.00	0.00	40.78	3.69
2806	4748	7.056635	AGTTCGTGGATCCAAGATGAATTTAT	58.943	34.615	27.82	8.03	34.70	1.40
2844	4787	4.641396	TCACTCTTGAACAACCATCGATT	58.359	39.130	0.00	0.00	0.00	3.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	1.751924	CTCCTACTCTTCCCGGTTCAG	59.248	57.143	0.00	0.00	0.00	3.02
20	21	1.848652	CTCCTACTCTTCCCGGTTCA	58.151	55.000	0.00	0.00	0.00	3.18
21	22	0.460722	GCTCCTACTCTTCCCGGTTC	59.539	60.000	0.00	0.00	0.00	3.62
34	35	2.764128	CTGGAAGCCCGGCTCCTA	60.764	66.667	13.72	0.00	38.25	2.94
106	107	0.034477	AGATCCACCCCGCGAAAAAT	60.034	50.000	8.23	0.00	0.00	1.82
290	304	5.376625	AGTTGTTGCCTCATAAGAGAACAA	58.623	37.500	9.61	9.61	44.98	2.83
298	312	5.048083	GGTTGATGAAGTTGTTGCCTCATAA	60.048	40.000	0.00	0.00	0.00	1.90
417	638	3.302347	CTGAGAGTCCGCCACCACC	62.302	68.421	0.00	0.00	0.00	4.61
476	797	5.012148	ACTGATTTATCCCTTGGGTCTATCG	59.988	44.000	5.51	5.07	0.00	2.92
481	812	3.381590	GCAACTGATTTATCCCTTGGGTC	59.618	47.826	5.51	0.00	0.00	4.46
579	919	3.630148	CCATCGATCACCACGCGC	61.630	66.667	5.73	0.00	0.00	6.86
582	929	0.806102	GGACACCATCGATCACCACG	60.806	60.000	0.00	0.00	0.00	4.94
631	1514	6.433766	CGGAGTATAAAAAGGTAGGTAGACG	58.566	44.000	0.00	0.00	0.00	4.18
683	1572	1.952621	TTGCAGCTAGTACCTTCCCT	58.047	50.000	0.00	0.00	0.00	4.20
702	1591	5.936956	ACGTGTAGTAGTAGTAGTCTTGCTT	59.063	40.000	0.00	0.00	0.00	3.91
703	1592	5.486526	ACGTGTAGTAGTAGTAGTCTTGCT	58.513	41.667	0.00	0.00	0.00	3.91
708	1597	4.564769	AGCGAACGTGTAGTAGTAGTAGTC	59.435	45.833	0.00	0.00	0.00	2.59
711	1600	3.618594	CCAGCGAACGTGTAGTAGTAGTA	59.381	47.826	0.00	0.00	0.00	1.82
713	1602	2.674852	TCCAGCGAACGTGTAGTAGTAG	59.325	50.000	0.00	0.00	0.00	2.57
714	1603	2.698803	TCCAGCGAACGTGTAGTAGTA	58.301	47.619	0.00	0.00	0.00	1.82
715	1604	1.527034	TCCAGCGAACGTGTAGTAGT	58.473	50.000	0.00	0.00	0.00	2.73
716	1605	2.624316	TTCCAGCGAACGTGTAGTAG	57.376	50.000	0.00	0.00	0.00	2.57
835	1740	5.134679	AGAGGCCTATATATGTACCGAGGAT	59.865	44.000	4.42	0.00	0.00	3.24
864	2679	1.295792	TCAACGTGGAAGAACACTGC	58.704	50.000	0.00	0.00	39.19	4.40
902	2717	8.860780	AGAAGAAGAACAGATAGAAGCAAAAT	57.139	30.769	0.00	0.00	0.00	1.82
903	2718	8.682936	AAGAAGAAGAACAGATAGAAGCAAAA	57.317	30.769	0.00	0.00	0.00	2.44
905	2720	6.587990	CGAAGAAGAAGAACAGATAGAAGCAA	59.412	38.462	0.00	0.00	0.00	3.91
906	2721	6.071896	TCGAAGAAGAAGAACAGATAGAAGCA	60.072	38.462	0.00	0.00	0.00	3.91
907	2722	6.326375	TCGAAGAAGAAGAACAGATAGAAGC	58.674	40.000	0.00	0.00	0.00	3.86
908	2723	7.757526	TCTCGAAGAAGAAGAACAGATAGAAG	58.242	38.462	0.00	0.00	34.09	2.85
909	2724	7.689446	TCTCGAAGAAGAAGAACAGATAGAA	57.311	36.000	0.00	0.00	34.09	2.10
910	2725	7.689446	TTCTCGAAGAAGAAGAACAGATAGA	57.311	36.000	0.00	0.00	34.09	1.98
911	2726	8.925161	AATTCTCGAAGAAGAAGAACAGATAG	57.075	34.615	0.00	0.00	37.69	2.08
912	2727	9.712305	AAAATTCTCGAAGAAGAAGAACAGATA	57.288	29.630	0.00	0.00	37.69	1.98
913	2728	8.614469	AAAATTCTCGAAGAAGAAGAACAGAT	57.386	30.769	0.00	0.00	37.69	2.90
914	2729	8.438676	AAAAATTCTCGAAGAAGAAGAACAGA	57.561	30.769	0.00	0.00	37.69	3.41
944	2759	4.427312	GACCATGACTGCATTCCAAATTC	58.573	43.478	1.11	0.00	30.68	2.17
960	2775	1.000385	ACCAACAATGCAACGACCATG	60.000	47.619	0.00	0.00	0.00	3.66
996	2811	3.381949	GACACCCGTCACTAGCATTATC	58.618	50.000	0.00	0.00	42.13	1.75
1029	2844	0.824182	TTCCCGACAAAACCGCCATT	60.824	50.000	0.00	0.00	0.00	3.16
1046	2861	5.835113	TTTAATTGCAGGCTCCATACTTC	57.165	39.130	0.00	0.00	0.00	3.01
1118	2946	2.224090	TGTGTCCGTCGAAATCAAAGGA	60.224	45.455	0.00	0.00	0.00	3.36
1133	2961	3.566742	TGCATGCATCTATCAATGTGTCC	59.433	43.478	18.46	0.00	0.00	4.02
1138	2966	5.385509	TTCCATGCATGCATCTATCAATG	57.614	39.130	30.07	17.46	33.90	2.82
1184	3012	2.290531	TGTTGTGCACAAACACCATG	57.709	45.000	32.61	0.00	39.93	3.66
1294	3122	4.733077	AGAGATACTAGAGGGCTTGCTA	57.267	45.455	0.00	0.00	0.00	3.49
1438	3279	8.567948	TCATCCACTAAATTGTTGTCTTCTTTC	58.432	33.333	0.00	0.00	0.00	2.62
1443	3284	5.181245	CGGTCATCCACTAAATTGTTGTCTT	59.819	40.000	0.00	0.00	0.00	3.01
1510	3351	2.099405	CCTGCAACCCGTCCAATAATT	58.901	47.619	0.00	0.00	0.00	1.40
1871	3727	4.026310	CACATAAATCTACCGCGGTTACAC	60.026	45.833	38.94	0.00	0.00	2.90
1990	3855	0.393944	ACGGATGGAGCTCGACTACA	60.394	55.000	7.83	0.00	45.80	2.74
1994	3859	0.526524	CAAGACGGATGGAGCTCGAC	60.527	60.000	7.83	1.23	0.00	4.20
2074	3941	3.483922	GTCGATCGTGCAGAGAAATGTAG	59.516	47.826	15.94	0.00	0.00	2.74
2084	3951	2.467838	AGAATCATGTCGATCGTGCAG	58.532	47.619	15.94	4.62	31.11	4.41
2215	4091	3.983344	GCCAGATGTGTGTTCATTGTTTC	59.017	43.478	0.00	0.00	0.00	2.78
2232	4108	2.044650	GCCAATGCAGAGGCCAGA	60.045	61.111	18.79	0.00	45.18	3.86
2252	4130	1.472878	GATGGCTACTCACACTCGTCA	59.527	52.381	0.00	0.00	0.00	4.35
2304	4183	1.374252	AACGTCCCGCAACTGCTAG	60.374	57.895	0.00	0.00	39.32	3.42
2306	4185	2.972505	CAACGTCCCGCAACTGCT	60.973	61.111	0.00	0.00	39.32	4.24
2403	4283	2.887152	GTCATTGTTGAAGGAGGCTGTT	59.113	45.455	0.00	0.00	32.48	3.16
2489	4404	2.115266	CAAACTGCCTCCCGGGTT	59.885	61.111	22.86	2.48	37.43	4.11
2537	4467	2.472816	ACAATTGCTTTTGTTCCGCTG	58.527	42.857	5.05	0.00	36.43	5.18
2611	4548	9.836076	GTCGACCTTAGCAAGTTTTATAAATTT	57.164	29.630	3.51	0.00	0.00	1.82
2662	4602	5.549347	TGTAGGCGTATTTAAAGTGGACAA	58.451	37.500	0.00	0.00	0.00	3.18
2676	4616	5.109210	CAAGACTGATTTGATGTAGGCGTA	58.891	41.667	0.00	0.00	0.00	4.42
2776	4717	4.079980	TCTTGGATCCACGAACTCAAAA	57.920	40.909	18.09	0.00	0.00	2.44
2778	4719	3.260632	TCATCTTGGATCCACGAACTCAA	59.739	43.478	23.39	1.62	0.00	3.02
2783	4724	7.555914	TCAATAAATTCATCTTGGATCCACGAA	59.444	33.333	23.39	18.22	0.00	3.85
2785	4726	7.263100	TCAATAAATTCATCTTGGATCCACG	57.737	36.000	15.91	13.74	0.00	4.94
2806	4748	5.201713	AGAGTGAGATTCTCGTGTTTCAA	57.798	39.130	9.07	0.00	37.07	2.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.