Multiple sequence alignment - TraesCS6D01G313800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G313800 chr6D 100.000 2724 0 0 1 2724 422220994 422223717 0.000000e+00 5031.0
1 TraesCS6D01G313800 chr6D 96.774 217 4 3 437 651 422224875 422224660 2.580000e-95 359.0
2 TraesCS6D01G313800 chr6D 97.279 147 4 0 290 436 62252995 62252849 1.620000e-62 250.0
3 TraesCS6D01G313800 chr6D 96.599 147 3 2 290 436 291601585 291601729 2.710000e-60 243.0
4 TraesCS6D01G313800 chr7B 92.642 2161 78 16 437 2569 725016269 725014162 0.000000e+00 3035.0
5 TraesCS6D01G313800 chr7B 90.071 564 23 6 1076 1621 732476945 732476397 0.000000e+00 701.0
6 TraesCS6D01G313800 chr7B 87.523 553 53 6 2023 2569 87711 87169 2.300000e-175 625.0
7 TraesCS6D01G313800 chr7B 85.470 351 27 12 436 771 732477720 732477379 7.220000e-91 344.0
8 TraesCS6D01G313800 chr7B 87.600 250 23 6 437 682 732475885 732476130 1.600000e-72 283.0
9 TraesCS6D01G313800 chr7B 97.315 149 4 0 2576 2724 724983895 724983747 1.250000e-63 254.0
10 TraesCS6D01G313800 chr7B 100.000 28 0 0 1207 1234 732476918 732476891 5.000000e-03 52.8
11 TraesCS6D01G313800 chr6A 93.506 1617 55 24 429 2039 158086346 158087918 0.000000e+00 2359.0
12 TraesCS6D01G313800 chr6A 98.983 688 6 1 2038 2724 158088022 158088709 0.000000e+00 1230.0
13 TraesCS6D01G313800 chr6A 86.806 432 41 6 2023 2448 595573054 595572633 4.110000e-128 468.0
14 TraesCS6D01G313800 chr6A 86.667 330 40 2 1402 1729 595574151 595573824 1.990000e-96 363.0
15 TraesCS6D01G313800 chr6B 89.405 1916 75 51 435 2294 648065317 648067160 0.000000e+00 2296.0
16 TraesCS6D01G313800 chr6B 98.658 149 2 0 2576 2724 648069960 648070108 5.780000e-67 265.0
17 TraesCS6D01G313800 chr3A 91.712 1484 55 30 1113 2569 13185767 13184325 0.000000e+00 1997.0
18 TraesCS6D01G313800 chr3A 87.918 538 58 6 2035 2566 67007277 67007813 6.400000e-176 627.0
19 TraesCS6D01G313800 chr3A 87.546 538 60 6 2035 2566 66916654 66917190 1.390000e-172 616.0
20 TraesCS6D01G313800 chr3A 96.207 290 10 1 1 290 585062400 585062688 8.830000e-130 473.0
21 TraesCS6D01G313800 chr3A 87.819 353 23 10 438 771 13186215 13185864 1.970000e-106 396.0
22 TraesCS6D01G313800 chr3A 91.429 175 10 4 783 955 13185932 13185761 4.530000e-58 235.0
23 TraesCS6D01G313800 chr3A 95.385 130 6 0 2595 2724 13157292 13157163 9.890000e-50 207.0
24 TraesCS6D01G313800 chr3A 88.312 154 16 2 290 442 261417015 261416863 1.670000e-42 183.0
25 TraesCS6D01G313800 chr5A 89.680 843 54 11 435 1273 536259902 536259089 0.000000e+00 1044.0
26 TraesCS6D01G313800 chr1B 88.652 705 53 19 436 1127 633533368 633534058 0.000000e+00 833.0
27 TraesCS6D01G313800 chr1B 87.273 495 51 10 2078 2566 259334122 259334610 3.060000e-154 555.0
28 TraesCS6D01G313800 chr1B 95.000 60 3 0 1209 1268 633534035 633534094 8.030000e-16 95.3
29 TraesCS6D01G313800 chr7A 85.817 698 60 21 445 1138 652298535 652297873 0.000000e+00 704.0
30 TraesCS6D01G313800 chr7A 95.349 86 4 0 1186 1271 652296180 652296095 1.320000e-28 137.0
31 TraesCS6D01G313800 chr4B 88.909 541 52 6 2035 2569 91743465 91742927 0.000000e+00 660.0
32 TraesCS6D01G313800 chr4B 88.000 550 50 6 2023 2566 540463929 540464468 1.060000e-178 636.0
33 TraesCS6D01G313800 chr4B 85.758 330 43 2 1402 1729 540462848 540463175 2.010000e-91 346.0
34 TraesCS6D01G313800 chr5D 88.267 554 47 8 2023 2569 301122278 301121736 0.000000e+00 647.0
35 TraesCS6D01G313800 chr5D 96.194 289 9 1 1 289 170318650 170318936 3.170000e-129 472.0
36 TraesCS6D01G313800 chr3B 87.986 566 23 4 1073 1621 79301735 79302272 6.400000e-176 627.0
37 TraesCS6D01G313800 chr3B 89.164 323 30 4 1533 1852 156825451 156825131 5.470000e-107 398.0
38 TraesCS6D01G313800 chr3B 88.973 263 23 3 2034 2290 156824897 156824635 1.220000e-83 320.0
39 TraesCS6D01G313800 chr3B 98.658 149 2 0 2576 2724 89380492 89380344 5.780000e-67 265.0
40 TraesCS6D01G313800 chr3B 94.805 77 4 0 1390 1466 156825543 156825467 1.320000e-23 121.0
41 TraesCS6D01G313800 chr3B 95.000 60 3 0 1013 1072 156825710 156825651 8.030000e-16 95.3
42 TraesCS6D01G313800 chr3B 94.444 54 3 0 1010 1063 133430590 133430643 1.740000e-12 84.2
43 TraesCS6D01G313800 chr3B 96.774 31 1 0 1204 1234 79301761 79301791 5.000000e-03 52.8
44 TraesCS6D01G313800 chrUn 88.036 443 47 5 2099 2535 475863999 475864441 1.120000e-143 520.0
45 TraesCS6D01G313800 chr4A 95.890 292 10 2 1 292 709847221 709847510 3.170000e-129 472.0
46 TraesCS6D01G313800 chr7D 98.148 270 3 1 435 702 556222590 556222859 1.140000e-128 470.0
47 TraesCS6D01G313800 chr7D 93.919 148 7 2 290 436 625509204 625509350 3.530000e-54 222.0
48 TraesCS6D01G313800 chr7D 92.568 148 9 2 290 436 87177141 87177287 7.640000e-51 211.0
49 TraesCS6D01G313800 chr7D 91.781 146 10 2 292 436 625507399 625507543 4.600000e-48 202.0
50 TraesCS6D01G313800 chr1A 96.181 288 8 3 1 287 455016240 455016525 4.110000e-128 468.0
51 TraesCS6D01G313800 chr2D 95.862 290 9 3 1 289 450874991 450875278 1.480000e-127 466.0
52 TraesCS6D01G313800 chr2D 95.862 290 9 3 1 289 565133110 565133397 1.480000e-127 466.0
53 TraesCS6D01G313800 chr2D 95.862 290 7 5 1 289 564925317 564925602 5.310000e-127 464.0
54 TraesCS6D01G313800 chr2D 89.516 248 21 5 437 682 574568338 574568094 2.630000e-80 309.0
55 TraesCS6D01G313800 chr2D 94.853 136 7 0 2589 2724 574567610 574567745 2.120000e-51 213.0
56 TraesCS6D01G313800 chr3D 95.848 289 9 2 1 289 137217961 137218246 5.310000e-127 464.0
57 TraesCS6D01G313800 chr3D 95.238 147 5 2 290 436 485142373 485142517 5.870000e-57 231.0
58 TraesCS6D01G313800 chr1D 94.915 295 13 2 1 294 301250655 301250362 6.870000e-126 460.0
59 TraesCS6D01G313800 chr1D 91.892 148 10 2 290 436 333277274 333277420 3.560000e-49 206.0
60 TraesCS6D01G313800 chr4D 85.837 233 29 3 1465 1694 123150037 123150268 7.530000e-61 244.0
61 TraesCS6D01G313800 chr2B 93.243 148 8 2 290 436 147030069 147030215 1.640000e-52 217.0
62 TraesCS6D01G313800 chr5B 86.667 150 20 0 932 1081 685069004 685068855 1.680000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G313800 chr6D 422220994 422223717 2723 False 5031.000000 5031 100.0000 1 2724 1 chr6D.!!$F2 2723
1 TraesCS6D01G313800 chr7B 725014162 725016269 2107 True 3035.000000 3035 92.6420 437 2569 1 chr7B.!!$R3 2132
2 TraesCS6D01G313800 chr7B 87169 87711 542 True 625.000000 625 87.5230 2023 2569 1 chr7B.!!$R1 546
3 TraesCS6D01G313800 chr7B 732476397 732477720 1323 True 365.933333 701 91.8470 436 1621 3 chr7B.!!$R4 1185
4 TraesCS6D01G313800 chr6A 158086346 158088709 2363 False 1794.500000 2359 96.2445 429 2724 2 chr6A.!!$F1 2295
5 TraesCS6D01G313800 chr6A 595572633 595574151 1518 True 415.500000 468 86.7365 1402 2448 2 chr6A.!!$R1 1046
6 TraesCS6D01G313800 chr6B 648065317 648070108 4791 False 1280.500000 2296 94.0315 435 2724 2 chr6B.!!$F1 2289
7 TraesCS6D01G313800 chr3A 13184325 13186215 1890 True 876.000000 1997 90.3200 438 2569 3 chr3A.!!$R3 2131
8 TraesCS6D01G313800 chr3A 67007277 67007813 536 False 627.000000 627 87.9180 2035 2566 1 chr3A.!!$F2 531
9 TraesCS6D01G313800 chr3A 66916654 66917190 536 False 616.000000 616 87.5460 2035 2566 1 chr3A.!!$F1 531
10 TraesCS6D01G313800 chr5A 536259089 536259902 813 True 1044.000000 1044 89.6800 435 1273 1 chr5A.!!$R1 838
11 TraesCS6D01G313800 chr1B 633533368 633534094 726 False 464.150000 833 91.8260 436 1268 2 chr1B.!!$F2 832
12 TraesCS6D01G313800 chr7A 652296095 652298535 2440 True 420.500000 704 90.5830 445 1271 2 chr7A.!!$R1 826
13 TraesCS6D01G313800 chr4B 91742927 91743465 538 True 660.000000 660 88.9090 2035 2569 1 chr4B.!!$R1 534
14 TraesCS6D01G313800 chr4B 540462848 540464468 1620 False 491.000000 636 86.8790 1402 2566 2 chr4B.!!$F1 1164
15 TraesCS6D01G313800 chr5D 301121736 301122278 542 True 647.000000 647 88.2670 2023 2569 1 chr5D.!!$R1 546
16 TraesCS6D01G313800 chr3B 79301735 79302272 537 False 339.900000 627 92.3800 1073 1621 2 chr3B.!!$F2 548
17 TraesCS6D01G313800 chr3B 156824635 156825710 1075 True 233.575000 398 91.9855 1013 2290 4 chr3B.!!$R2 1277
18 TraesCS6D01G313800 chr7D 625507399 625509350 1951 False 212.000000 222 92.8500 290 436 2 chr7D.!!$F3 146

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 262 0.032615 AAAGTGGGGTGTTCCTTGCA 60.033 50.0 0.0 0.0 35.33 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2227 5875 1.00186 GTTCAGAGAAGTGCTCCAGCT 59.998 52.381 0.0 0.0 45.1 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 6.842081 TTTTCGTGAAAAAGAAAGTTCGTC 57.158 33.333 5.34 0.00 37.35 4.20
52 53 5.533533 TTCGTGAAAAAGAAAGTTCGTCA 57.466 34.783 0.00 0.00 0.00 4.35
53 54 5.533533 TCGTGAAAAAGAAAGTTCGTCAA 57.466 34.783 0.00 0.00 0.00 3.18
54 55 5.929278 TCGTGAAAAAGAAAGTTCGTCAAA 58.071 33.333 0.00 0.00 0.00 2.69
55 56 6.372185 TCGTGAAAAAGAAAGTTCGTCAAAA 58.628 32.000 0.00 0.00 0.00 2.44
56 57 7.024768 TCGTGAAAAAGAAAGTTCGTCAAAAT 58.975 30.769 0.00 0.00 0.00 1.82
57 58 7.217447 TCGTGAAAAAGAAAGTTCGTCAAAATC 59.783 33.333 0.00 0.00 0.00 2.17
58 59 7.218204 CGTGAAAAAGAAAGTTCGTCAAAATCT 59.782 33.333 0.00 0.00 0.00 2.40
59 60 9.498307 GTGAAAAAGAAAGTTCGTCAAAATCTA 57.502 29.630 0.00 0.00 0.00 1.98
64 65 9.665264 AAAGAAAGTTCGTCAAAATCTATCAAC 57.335 29.630 0.00 0.00 0.00 3.18
65 66 8.378172 AGAAAGTTCGTCAAAATCTATCAACA 57.622 30.769 0.00 0.00 0.00 3.33
66 67 9.003658 AGAAAGTTCGTCAAAATCTATCAACAT 57.996 29.630 0.00 0.00 0.00 2.71
67 68 8.955061 AAAGTTCGTCAAAATCTATCAACATG 57.045 30.769 0.00 0.00 0.00 3.21
68 69 7.076842 AGTTCGTCAAAATCTATCAACATGG 57.923 36.000 0.00 0.00 0.00 3.66
69 70 6.094048 AGTTCGTCAAAATCTATCAACATGGG 59.906 38.462 0.00 0.00 0.00 4.00
70 71 5.739959 TCGTCAAAATCTATCAACATGGGA 58.260 37.500 0.00 0.00 0.00 4.37
71 72 6.356556 TCGTCAAAATCTATCAACATGGGAT 58.643 36.000 0.00 2.37 0.00 3.85
72 73 6.483307 TCGTCAAAATCTATCAACATGGGATC 59.517 38.462 5.52 0.00 0.00 3.36
73 74 6.484643 CGTCAAAATCTATCAACATGGGATCT 59.515 38.462 5.52 0.00 0.00 2.75
74 75 7.657354 CGTCAAAATCTATCAACATGGGATCTA 59.343 37.037 5.52 0.00 0.00 1.98
75 76 8.997323 GTCAAAATCTATCAACATGGGATCTAG 58.003 37.037 5.52 0.62 0.00 2.43
76 77 8.717717 TCAAAATCTATCAACATGGGATCTAGT 58.282 33.333 5.52 0.00 0.00 2.57
77 78 9.347240 CAAAATCTATCAACATGGGATCTAGTT 57.653 33.333 5.52 0.16 0.00 2.24
78 79 9.927081 AAAATCTATCAACATGGGATCTAGTTT 57.073 29.630 5.52 5.16 0.00 2.66
79 80 9.927081 AAATCTATCAACATGGGATCTAGTTTT 57.073 29.630 5.52 4.80 0.00 2.43
80 81 8.915057 ATCTATCAACATGGGATCTAGTTTTG 57.085 34.615 5.52 0.00 0.00 2.44
81 82 8.089625 TCTATCAACATGGGATCTAGTTTTGA 57.910 34.615 5.52 0.00 0.00 2.69
82 83 8.548025 TCTATCAACATGGGATCTAGTTTTGAA 58.452 33.333 5.52 0.00 0.00 2.69
83 84 7.636150 ATCAACATGGGATCTAGTTTTGAAG 57.364 36.000 0.00 0.00 0.00 3.02
84 85 6.778821 TCAACATGGGATCTAGTTTTGAAGA 58.221 36.000 0.00 0.00 0.00 2.87
85 86 7.405292 TCAACATGGGATCTAGTTTTGAAGAT 58.595 34.615 0.00 0.00 0.00 2.40
86 87 7.554118 TCAACATGGGATCTAGTTTTGAAGATC 59.446 37.037 0.00 4.15 37.15 2.75
87 88 7.205515 ACATGGGATCTAGTTTTGAAGATCT 57.794 36.000 11.05 0.00 37.77 2.75
88 89 7.278875 ACATGGGATCTAGTTTTGAAGATCTC 58.721 38.462 11.05 8.38 38.41 2.75
89 90 5.907207 TGGGATCTAGTTTTGAAGATCTCG 58.093 41.667 11.05 0.00 40.21 4.04
90 91 5.656859 TGGGATCTAGTTTTGAAGATCTCGA 59.343 40.000 11.05 0.00 40.21 4.04
91 92 5.980715 GGGATCTAGTTTTGAAGATCTCGAC 59.019 44.000 11.05 0.00 37.77 4.20
92 93 5.683743 GGATCTAGTTTTGAAGATCTCGACG 59.316 44.000 11.05 0.00 37.77 5.12
93 94 4.413087 TCTAGTTTTGAAGATCTCGACGC 58.587 43.478 0.00 0.00 0.00 5.19
94 95 1.986378 AGTTTTGAAGATCTCGACGCG 59.014 47.619 3.53 3.53 0.00 6.01
95 96 1.983605 GTTTTGAAGATCTCGACGCGA 59.016 47.619 15.93 0.00 0.00 5.87
104 105 3.280211 TCGACGCGAGGAATCCAA 58.720 55.556 15.93 0.00 0.00 3.53
105 106 1.813859 TCGACGCGAGGAATCCAAT 59.186 52.632 15.93 0.00 0.00 3.16
106 107 0.527600 TCGACGCGAGGAATCCAATG 60.528 55.000 15.93 0.00 0.00 2.82
107 108 1.490693 CGACGCGAGGAATCCAATGG 61.491 60.000 15.93 0.00 0.00 3.16
108 109 0.462047 GACGCGAGGAATCCAATGGT 60.462 55.000 15.93 0.00 0.00 3.55
109 110 0.744414 ACGCGAGGAATCCAATGGTG 60.744 55.000 15.93 0.00 0.00 4.17
110 111 0.461870 CGCGAGGAATCCAATGGTGA 60.462 55.000 0.00 0.00 0.00 4.02
111 112 1.750193 GCGAGGAATCCAATGGTGAA 58.250 50.000 0.61 0.00 0.00 3.18
112 113 2.091541 GCGAGGAATCCAATGGTGAAA 58.908 47.619 0.61 0.00 0.00 2.69
113 114 2.491693 GCGAGGAATCCAATGGTGAAAA 59.508 45.455 0.61 0.00 0.00 2.29
114 115 3.673323 GCGAGGAATCCAATGGTGAAAAC 60.673 47.826 0.61 0.00 0.00 2.43
115 116 3.426159 CGAGGAATCCAATGGTGAAAACG 60.426 47.826 0.61 0.00 0.00 3.60
116 117 3.756434 GAGGAATCCAATGGTGAAAACGA 59.244 43.478 0.61 0.00 0.00 3.85
117 118 4.344104 AGGAATCCAATGGTGAAAACGAT 58.656 39.130 0.61 0.00 0.00 3.73
118 119 4.772100 AGGAATCCAATGGTGAAAACGATT 59.228 37.500 0.61 0.00 0.00 3.34
119 120 5.102313 GGAATCCAATGGTGAAAACGATTC 58.898 41.667 0.00 0.00 35.50 2.52
120 121 3.822594 TCCAATGGTGAAAACGATTCG 57.177 42.857 4.14 4.14 0.00 3.34
121 122 3.403968 TCCAATGGTGAAAACGATTCGA 58.596 40.909 13.95 0.00 0.00 3.71
122 123 3.435327 TCCAATGGTGAAAACGATTCGAG 59.565 43.478 13.95 0.00 0.00 4.04
123 124 3.435327 CCAATGGTGAAAACGATTCGAGA 59.565 43.478 13.95 0.00 0.00 4.04
124 125 4.094887 CCAATGGTGAAAACGATTCGAGAT 59.905 41.667 13.95 0.00 0.00 2.75
125 126 5.391950 CCAATGGTGAAAACGATTCGAGATT 60.392 40.000 13.95 4.38 0.00 2.40
126 127 5.880054 ATGGTGAAAACGATTCGAGATTT 57.120 34.783 13.95 10.44 0.00 2.17
127 128 5.029650 TGGTGAAAACGATTCGAGATTTG 57.970 39.130 13.95 0.00 0.00 2.32
128 129 4.083537 TGGTGAAAACGATTCGAGATTTGG 60.084 41.667 13.95 0.00 0.00 3.28
129 130 4.153475 GGTGAAAACGATTCGAGATTTGGA 59.847 41.667 13.95 0.00 0.00 3.53
130 131 5.080068 GTGAAAACGATTCGAGATTTGGAC 58.920 41.667 13.95 6.46 0.00 4.02
131 132 3.991605 AAACGATTCGAGATTTGGACG 57.008 42.857 13.95 0.00 0.00 4.79
132 133 1.278238 ACGATTCGAGATTTGGACGC 58.722 50.000 13.95 0.00 0.00 5.19
133 134 1.277326 CGATTCGAGATTTGGACGCA 58.723 50.000 0.00 0.00 0.00 5.24
134 135 1.005975 CGATTCGAGATTTGGACGCAC 60.006 52.381 0.00 0.00 0.00 5.34
135 136 0.999406 ATTCGAGATTTGGACGCACG 59.001 50.000 0.00 0.00 0.00 5.34
136 137 1.011968 TTCGAGATTTGGACGCACGG 61.012 55.000 0.00 0.00 0.00 4.94
137 138 1.736645 CGAGATTTGGACGCACGGT 60.737 57.895 0.00 0.00 0.00 4.83
138 139 1.289109 CGAGATTTGGACGCACGGTT 61.289 55.000 0.00 0.00 0.00 4.44
139 140 0.872388 GAGATTTGGACGCACGGTTT 59.128 50.000 0.00 0.00 0.00 3.27
140 141 2.070783 GAGATTTGGACGCACGGTTTA 58.929 47.619 0.00 0.00 0.00 2.01
141 142 2.481185 GAGATTTGGACGCACGGTTTAA 59.519 45.455 0.00 0.00 0.00 1.52
142 143 2.482721 AGATTTGGACGCACGGTTTAAG 59.517 45.455 0.00 0.00 0.00 1.85
143 144 1.950828 TTTGGACGCACGGTTTAAGA 58.049 45.000 0.00 0.00 0.00 2.10
144 145 1.504359 TTGGACGCACGGTTTAAGAG 58.496 50.000 0.00 0.00 0.00 2.85
145 146 0.675083 TGGACGCACGGTTTAAGAGA 59.325 50.000 0.00 0.00 0.00 3.10
146 147 1.274167 TGGACGCACGGTTTAAGAGAT 59.726 47.619 0.00 0.00 0.00 2.75
147 148 2.492881 TGGACGCACGGTTTAAGAGATA 59.507 45.455 0.00 0.00 0.00 1.98
148 149 3.056678 TGGACGCACGGTTTAAGAGATAA 60.057 43.478 0.00 0.00 0.00 1.75
149 150 3.928375 GGACGCACGGTTTAAGAGATAAA 59.072 43.478 0.00 0.00 0.00 1.40
150 151 4.389687 GGACGCACGGTTTAAGAGATAAAA 59.610 41.667 0.00 0.00 35.33 1.52
151 152 5.273523 ACGCACGGTTTAAGAGATAAAAC 57.726 39.130 0.00 0.00 37.75 2.43
174 175 6.321873 CGTTTTGAATAAACGGATCTACGA 57.678 37.500 13.31 0.00 46.39 3.43
175 176 6.754206 CGTTTTGAATAAACGGATCTACGAA 58.246 36.000 13.31 0.00 46.39 3.85
176 177 7.228840 CGTTTTGAATAAACGGATCTACGAAA 58.771 34.615 13.31 0.00 46.39 3.46
177 178 7.741216 CGTTTTGAATAAACGGATCTACGAAAA 59.259 33.333 13.31 0.00 46.39 2.29
178 179 9.384682 GTTTTGAATAAACGGATCTACGAAAAA 57.615 29.630 0.00 0.00 37.61 1.94
199 200 1.956802 GGAAAACTCCCAGGTTGCG 59.043 57.895 0.00 0.00 0.00 4.85
200 201 0.536460 GGAAAACTCCCAGGTTGCGA 60.536 55.000 0.00 0.00 0.00 5.10
201 202 0.591659 GAAAACTCCCAGGTTGCGAC 59.408 55.000 0.00 0.00 0.00 5.19
202 203 0.106918 AAAACTCCCAGGTTGCGACA 60.107 50.000 6.39 0.00 0.00 4.35
203 204 0.106918 AAACTCCCAGGTTGCGACAA 60.107 50.000 6.39 0.00 0.00 3.18
204 205 0.535102 AACTCCCAGGTTGCGACAAG 60.535 55.000 6.39 0.00 0.00 3.16
205 206 1.071471 CTCCCAGGTTGCGACAAGT 59.929 57.895 6.39 0.00 0.00 3.16
206 207 1.227823 TCCCAGGTTGCGACAAGTG 60.228 57.895 6.39 0.00 0.00 3.16
207 208 2.260869 CCCAGGTTGCGACAAGTGG 61.261 63.158 6.39 9.17 0.00 4.00
208 209 2.639286 CAGGTTGCGACAAGTGGC 59.361 61.111 6.39 0.00 34.76 5.01
228 229 4.047059 GCTGCATGTGCGCCACTT 62.047 61.111 4.18 0.00 45.83 3.16
229 230 2.126618 CTGCATGTGCGCCACTTG 60.127 61.111 4.18 12.50 45.83 3.16
230 231 2.906388 TGCATGTGCGCCACTTGT 60.906 55.556 4.18 0.00 45.83 3.16
231 232 2.126734 GCATGTGCGCCACTTGTC 60.127 61.111 4.18 5.08 40.25 3.18
232 233 2.174107 CATGTGCGCCACTTGTCG 59.826 61.111 4.18 0.00 35.64 4.35
239 240 3.414700 GCCACTTGTCGCGACCAG 61.415 66.667 34.34 32.99 0.00 4.00
240 241 2.738521 CCACTTGTCGCGACCAGG 60.739 66.667 34.84 26.24 0.00 4.45
241 242 2.738521 CACTTGTCGCGACCAGGG 60.739 66.667 34.84 30.73 0.00 4.45
242 243 2.915659 ACTTGTCGCGACCAGGGA 60.916 61.111 34.84 17.33 39.67 4.20
243 244 2.342279 CTTGTCGCGACCAGGGAA 59.658 61.111 34.34 20.80 43.70 3.97
244 245 1.301401 CTTGTCGCGACCAGGGAAA 60.301 57.895 34.34 20.10 43.70 3.13
245 246 1.291877 CTTGTCGCGACCAGGGAAAG 61.292 60.000 34.34 24.78 43.70 2.62
246 247 2.035237 TTGTCGCGACCAGGGAAAGT 62.035 55.000 34.34 0.00 43.70 2.66
247 248 2.027625 GTCGCGACCAGGGAAAGTG 61.028 63.158 28.61 0.00 43.70 3.16
248 249 2.742372 CGCGACCAGGGAAAGTGG 60.742 66.667 0.00 0.00 41.30 4.00
249 250 2.359975 GCGACCAGGGAAAGTGGG 60.360 66.667 0.00 0.00 39.65 4.61
250 251 2.351276 CGACCAGGGAAAGTGGGG 59.649 66.667 0.00 0.00 39.65 4.96
251 252 2.526046 CGACCAGGGAAAGTGGGGT 61.526 63.158 0.00 0.00 39.65 4.95
252 253 1.074951 GACCAGGGAAAGTGGGGTG 59.925 63.158 0.00 0.00 39.65 4.61
253 254 1.699930 ACCAGGGAAAGTGGGGTGT 60.700 57.895 0.00 0.00 39.65 4.16
254 255 1.293683 ACCAGGGAAAGTGGGGTGTT 61.294 55.000 0.00 0.00 39.65 3.32
255 256 0.539669 CCAGGGAAAGTGGGGTGTTC 60.540 60.000 0.00 0.00 0.00 3.18
256 257 0.539669 CAGGGAAAGTGGGGTGTTCC 60.540 60.000 0.00 0.00 40.16 3.62
257 258 0.701310 AGGGAAAGTGGGGTGTTCCT 60.701 55.000 1.98 0.00 40.62 3.36
258 259 0.187606 GGGAAAGTGGGGTGTTCCTT 59.812 55.000 1.98 0.00 40.62 3.36
259 260 1.328279 GGAAAGTGGGGTGTTCCTTG 58.672 55.000 0.00 0.00 38.24 3.61
260 261 0.673985 GAAAGTGGGGTGTTCCTTGC 59.326 55.000 0.00 0.00 35.33 4.01
261 262 0.032615 AAAGTGGGGTGTTCCTTGCA 60.033 50.000 0.00 0.00 35.33 4.08
262 263 0.032615 AAGTGGGGTGTTCCTTGCAA 60.033 50.000 0.00 0.00 35.33 4.08
263 264 0.755327 AGTGGGGTGTTCCTTGCAAC 60.755 55.000 0.00 0.00 35.33 4.17
264 265 1.826054 TGGGGTGTTCCTTGCAACG 60.826 57.895 0.00 0.00 35.33 4.10
265 266 1.527380 GGGGTGTTCCTTGCAACGA 60.527 57.895 0.00 0.00 35.33 3.85
266 267 1.515521 GGGGTGTTCCTTGCAACGAG 61.516 60.000 0.00 0.00 35.33 4.18
267 268 0.818040 GGGTGTTCCTTGCAACGAGT 60.818 55.000 0.00 0.00 0.00 4.18
268 269 1.541670 GGGTGTTCCTTGCAACGAGTA 60.542 52.381 0.00 0.00 0.00 2.59
269 270 1.529865 GGTGTTCCTTGCAACGAGTAC 59.470 52.381 0.00 0.75 0.00 2.73
270 271 2.480845 GTGTTCCTTGCAACGAGTACT 58.519 47.619 0.00 0.00 0.00 2.73
271 272 2.475487 GTGTTCCTTGCAACGAGTACTC 59.525 50.000 13.18 13.18 0.00 2.59
272 273 2.067013 GTTCCTTGCAACGAGTACTCC 58.933 52.381 17.23 3.69 0.00 3.85
273 274 1.629043 TCCTTGCAACGAGTACTCCT 58.371 50.000 17.23 2.73 0.00 3.69
274 275 1.968493 TCCTTGCAACGAGTACTCCTT 59.032 47.619 17.23 9.18 0.00 3.36
275 276 3.159472 TCCTTGCAACGAGTACTCCTTA 58.841 45.455 17.23 0.00 0.00 2.69
276 277 3.575256 TCCTTGCAACGAGTACTCCTTAA 59.425 43.478 17.23 3.95 0.00 1.85
277 278 4.222145 TCCTTGCAACGAGTACTCCTTAAT 59.778 41.667 17.23 0.00 0.00 1.40
278 279 4.935808 CCTTGCAACGAGTACTCCTTAATT 59.064 41.667 17.23 1.76 0.00 1.40
279 280 6.071221 TCCTTGCAACGAGTACTCCTTAATTA 60.071 38.462 17.23 0.00 0.00 1.40
280 281 6.255887 CCTTGCAACGAGTACTCCTTAATTAG 59.744 42.308 17.23 6.84 0.00 1.73
281 282 6.276832 TGCAACGAGTACTCCTTAATTAGT 57.723 37.500 17.23 3.77 0.00 2.24
282 283 6.097356 TGCAACGAGTACTCCTTAATTAGTG 58.903 40.000 17.23 1.71 0.00 2.74
283 284 6.071784 TGCAACGAGTACTCCTTAATTAGTGA 60.072 38.462 17.23 0.00 0.00 3.41
284 285 6.979238 GCAACGAGTACTCCTTAATTAGTGAT 59.021 38.462 17.23 0.00 0.00 3.06
285 286 7.491696 GCAACGAGTACTCCTTAATTAGTGATT 59.508 37.037 17.23 0.00 0.00 2.57
286 287 9.367444 CAACGAGTACTCCTTAATTAGTGATTT 57.633 33.333 17.23 0.00 0.00 2.17
287 288 9.583765 AACGAGTACTCCTTAATTAGTGATTTC 57.416 33.333 17.23 0.00 0.00 2.17
288 289 7.914346 ACGAGTACTCCTTAATTAGTGATTTCG 59.086 37.037 17.23 2.39 0.00 3.46
289 290 8.127327 CGAGTACTCCTTAATTAGTGATTTCGA 58.873 37.037 17.23 0.00 0.00 3.71
290 291 9.968870 GAGTACTCCTTAATTAGTGATTTCGAT 57.031 33.333 12.13 0.00 0.00 3.59
309 310 6.455360 TCGATAAACGAGGTGGTACTAATT 57.545 37.500 0.00 0.00 46.45 1.40
310 311 6.866480 TCGATAAACGAGGTGGTACTAATTT 58.134 36.000 0.00 0.00 46.45 1.82
311 312 6.753279 TCGATAAACGAGGTGGTACTAATTTG 59.247 38.462 0.00 0.00 46.45 2.32
312 313 6.019318 CGATAAACGAGGTGGTACTAATTTGG 60.019 42.308 0.00 0.00 45.77 3.28
313 314 3.622166 ACGAGGTGGTACTAATTTGGG 57.378 47.619 0.00 0.00 0.00 4.12
314 315 2.237893 ACGAGGTGGTACTAATTTGGGG 59.762 50.000 0.00 0.00 0.00 4.96
315 316 2.237893 CGAGGTGGTACTAATTTGGGGT 59.762 50.000 0.00 0.00 0.00 4.95
316 317 3.451902 CGAGGTGGTACTAATTTGGGGTA 59.548 47.826 0.00 0.00 0.00 3.69
317 318 4.681512 CGAGGTGGTACTAATTTGGGGTAC 60.682 50.000 0.00 0.00 36.18 3.34
318 319 3.198417 AGGTGGTACTAATTTGGGGTACG 59.802 47.826 0.00 0.00 37.33 3.67
319 320 2.938451 GTGGTACTAATTTGGGGTACGC 59.062 50.000 0.29 0.29 43.69 4.42
332 333 2.606272 GGGGTACGCACTAAAGATTTCG 59.394 50.000 12.45 0.00 42.57 3.46
333 334 3.256558 GGGTACGCACTAAAGATTTCGT 58.743 45.455 4.83 0.00 0.00 3.85
334 335 3.305361 GGGTACGCACTAAAGATTTCGTC 59.695 47.826 4.83 0.00 0.00 4.20
335 336 3.922240 GGTACGCACTAAAGATTTCGTCA 59.078 43.478 0.00 0.00 0.00 4.35
336 337 4.386652 GGTACGCACTAAAGATTTCGTCAA 59.613 41.667 0.00 0.00 0.00 3.18
337 338 5.107375 GGTACGCACTAAAGATTTCGTCAAA 60.107 40.000 0.00 0.00 0.00 2.69
338 339 5.412526 ACGCACTAAAGATTTCGTCAAAA 57.587 34.783 0.00 0.00 0.00 2.44
339 340 5.997385 ACGCACTAAAGATTTCGTCAAAAT 58.003 33.333 0.00 0.00 40.34 1.82
340 341 6.435428 ACGCACTAAAGATTTCGTCAAAATT 58.565 32.000 0.00 0.00 37.70 1.82
341 342 6.577427 ACGCACTAAAGATTTCGTCAAAATTC 59.423 34.615 0.00 0.00 37.70 2.17
342 343 6.032460 CGCACTAAAGATTTCGTCAAAATTCC 59.968 38.462 0.00 0.00 37.70 3.01
343 344 7.084486 GCACTAAAGATTTCGTCAAAATTCCT 58.916 34.615 0.00 0.00 37.70 3.36
344 345 7.595130 GCACTAAAGATTTCGTCAAAATTCCTT 59.405 33.333 0.00 0.00 37.70 3.36
362 363 9.788960 AAATTCCTTATTAGAATGTTCTTTCGC 57.211 29.630 0.00 0.00 38.70 4.70
363 364 8.738645 ATTCCTTATTAGAATGTTCTTTCGCT 57.261 30.769 0.00 0.00 38.70 4.93
364 365 7.772332 TCCTTATTAGAATGTTCTTTCGCTC 57.228 36.000 0.00 0.00 38.70 5.03
365 366 7.327975 TCCTTATTAGAATGTTCTTTCGCTCA 58.672 34.615 0.00 0.00 38.70 4.26
366 367 7.277981 TCCTTATTAGAATGTTCTTTCGCTCAC 59.722 37.037 0.00 0.00 38.70 3.51
367 368 4.903638 TTAGAATGTTCTTTCGCTCACG 57.096 40.909 0.00 0.00 38.70 4.35
368 369 2.069273 AGAATGTTCTTTCGCTCACGG 58.931 47.619 0.00 0.00 35.15 4.94
369 370 1.128692 GAATGTTCTTTCGCTCACGGG 59.871 52.381 0.00 0.00 40.63 5.28
370 371 1.298859 ATGTTCTTTCGCTCACGGGC 61.299 55.000 0.00 0.00 40.63 6.13
371 372 1.668151 GTTCTTTCGCTCACGGGCT 60.668 57.895 0.00 0.00 40.63 5.19
372 373 1.070786 TTCTTTCGCTCACGGGCTT 59.929 52.632 0.00 0.00 40.63 4.35
373 374 1.227999 TTCTTTCGCTCACGGGCTTG 61.228 55.000 0.00 0.00 40.63 4.01
374 375 2.668212 TTTCGCTCACGGGCTTGG 60.668 61.111 0.00 0.00 40.63 3.61
375 376 4.697756 TTCGCTCACGGGCTTGGG 62.698 66.667 0.00 0.00 40.63 4.12
378 379 4.096003 GCTCACGGGCTTGGGCTA 62.096 66.667 4.49 0.00 40.14 3.93
379 380 2.911143 CTCACGGGCTTGGGCTAT 59.089 61.111 0.00 0.00 38.73 2.97
380 381 1.524621 CTCACGGGCTTGGGCTATG 60.525 63.158 0.00 0.00 38.73 2.23
381 382 2.257409 CTCACGGGCTTGGGCTATGT 62.257 60.000 0.00 0.00 38.73 2.29
382 383 1.378514 CACGGGCTTGGGCTATGTT 60.379 57.895 0.00 0.00 38.73 2.71
383 384 1.077716 ACGGGCTTGGGCTATGTTC 60.078 57.895 0.00 0.00 38.73 3.18
384 385 1.224592 CGGGCTTGGGCTATGTTCT 59.775 57.895 0.00 0.00 38.73 3.01
385 386 0.394352 CGGGCTTGGGCTATGTTCTT 60.394 55.000 0.00 0.00 38.73 2.52
386 387 1.393603 GGGCTTGGGCTATGTTCTTC 58.606 55.000 0.00 0.00 38.73 2.87
387 388 1.393603 GGCTTGGGCTATGTTCTTCC 58.606 55.000 0.00 0.00 38.73 3.46
388 389 1.017387 GCTTGGGCTATGTTCTTCCG 58.983 55.000 0.00 0.00 35.22 4.30
389 390 1.679032 GCTTGGGCTATGTTCTTCCGT 60.679 52.381 0.00 0.00 35.22 4.69
390 391 2.711542 CTTGGGCTATGTTCTTCCGTT 58.288 47.619 0.00 0.00 0.00 4.44
391 392 3.869065 CTTGGGCTATGTTCTTCCGTTA 58.131 45.455 0.00 0.00 0.00 3.18
392 393 3.985019 TGGGCTATGTTCTTCCGTTAA 57.015 42.857 0.00 0.00 0.00 2.01
393 394 3.602483 TGGGCTATGTTCTTCCGTTAAC 58.398 45.455 0.00 0.00 0.00 2.01
394 395 2.606272 GGGCTATGTTCTTCCGTTAACG 59.394 50.000 20.99 20.99 39.44 3.18
395 396 2.030091 GGCTATGTTCTTCCGTTAACGC 59.970 50.000 22.43 8.20 38.18 4.84
396 397 2.928116 GCTATGTTCTTCCGTTAACGCT 59.072 45.455 22.43 1.96 38.18 5.07
397 398 3.370061 GCTATGTTCTTCCGTTAACGCTT 59.630 43.478 22.43 8.29 38.18 4.68
398 399 3.806316 ATGTTCTTCCGTTAACGCTTG 57.194 42.857 22.43 13.11 38.18 4.01
399 400 1.868498 TGTTCTTCCGTTAACGCTTGG 59.132 47.619 22.43 8.97 38.18 3.61
400 401 1.196127 GTTCTTCCGTTAACGCTTGGG 59.804 52.381 22.43 8.59 38.18 4.12
401 402 0.952010 TCTTCCGTTAACGCTTGGGC 60.952 55.000 22.43 0.00 38.18 5.36
402 403 1.918868 CTTCCGTTAACGCTTGGGCC 61.919 60.000 22.43 0.00 38.18 5.80
403 404 3.795342 CCGTTAACGCTTGGGCCG 61.795 66.667 22.43 2.38 38.18 6.13
404 405 3.045492 CGTTAACGCTTGGGCCGT 61.045 61.111 16.05 0.00 34.44 5.68
405 406 2.609759 CGTTAACGCTTGGGCCGTT 61.610 57.895 16.05 1.34 38.20 4.44
406 407 1.290491 CGTTAACGCTTGGGCCGTTA 61.290 55.000 16.05 0.24 36.86 3.18
407 408 0.166597 GTTAACGCTTGGGCCGTTAC 59.833 55.000 0.00 0.00 37.26 2.50
408 409 0.035176 TTAACGCTTGGGCCGTTACT 59.965 50.000 0.00 0.00 37.26 2.24
409 410 0.035176 TAACGCTTGGGCCGTTACTT 59.965 50.000 0.00 0.00 36.86 2.24
410 411 0.820482 AACGCTTGGGCCGTTACTTT 60.820 50.000 0.00 0.00 35.04 2.66
411 412 0.820482 ACGCTTGGGCCGTTACTTTT 60.820 50.000 0.00 0.00 34.44 2.27
412 413 0.312729 CGCTTGGGCCGTTACTTTTT 59.687 50.000 0.00 0.00 34.44 1.94
413 414 1.536331 CGCTTGGGCCGTTACTTTTTA 59.464 47.619 0.00 0.00 34.44 1.52
414 415 2.162809 CGCTTGGGCCGTTACTTTTTAT 59.837 45.455 0.00 0.00 34.44 1.40
415 416 3.366577 CGCTTGGGCCGTTACTTTTTATT 60.367 43.478 0.00 0.00 34.44 1.40
416 417 3.924073 GCTTGGGCCGTTACTTTTTATTG 59.076 43.478 0.00 0.00 0.00 1.90
417 418 4.490743 CTTGGGCCGTTACTTTTTATTGG 58.509 43.478 0.00 0.00 0.00 3.16
418 419 2.826725 TGGGCCGTTACTTTTTATTGGG 59.173 45.455 0.00 0.00 0.00 4.12
419 420 2.417651 GGGCCGTTACTTTTTATTGGGC 60.418 50.000 0.00 0.00 39.61 5.36
420 421 2.883574 GCCGTTACTTTTTATTGGGCC 58.116 47.619 0.00 0.00 33.29 5.80
421 422 2.494471 GCCGTTACTTTTTATTGGGCCT 59.506 45.455 4.53 0.00 33.29 5.19
422 423 3.674955 GCCGTTACTTTTTATTGGGCCTG 60.675 47.826 4.53 0.00 33.29 4.85
423 424 3.119280 CCGTTACTTTTTATTGGGCCTGG 60.119 47.826 4.53 0.00 0.00 4.45
424 425 3.119280 CGTTACTTTTTATTGGGCCTGGG 60.119 47.826 4.53 0.00 0.00 4.45
425 426 4.090819 GTTACTTTTTATTGGGCCTGGGA 58.909 43.478 4.53 0.00 0.00 4.37
426 427 3.268034 ACTTTTTATTGGGCCTGGGAA 57.732 42.857 4.53 0.00 0.00 3.97
427 428 3.592865 ACTTTTTATTGGGCCTGGGAAA 58.407 40.909 4.53 0.00 0.00 3.13
428 429 3.977326 ACTTTTTATTGGGCCTGGGAAAA 59.023 39.130 4.53 6.68 0.00 2.29
429 430 4.413851 ACTTTTTATTGGGCCTGGGAAAAA 59.586 37.500 4.53 11.10 0.00 1.94
533 538 6.607019 TCACACCCTCAAATTACTAAAACCT 58.393 36.000 0.00 0.00 0.00 3.50
695 712 1.376037 CCCCTTTGTCTCTCACGCC 60.376 63.158 0.00 0.00 0.00 5.68
713 815 0.618458 CCGAGAAAATCCCCACCTCA 59.382 55.000 0.00 0.00 0.00 3.86
952 1619 2.674380 AGTCGCCGGTTCCGTACT 60.674 61.111 1.90 7.68 0.00 2.73
1309 3635 3.297736 GGGGCTGTAGTACTAGTCATGT 58.702 50.000 1.87 0.00 0.00 3.21
1663 4465 1.133945 TGCCTTGTGGTTGCTGTTCTA 60.134 47.619 0.00 0.00 35.27 2.10
1734 4611 9.793252 ATTAGTTTGTGAATGACTCAATTATGC 57.207 29.630 0.00 0.00 35.22 3.14
2227 5875 3.432749 CCTTTGCTGATCTAGGCTTGCTA 60.433 47.826 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.856938 TGACGAACTTTCTTTTTCACGAAAAA 59.143 30.769 15.00 15.00 44.98 1.94
28 29 6.372185 TGACGAACTTTCTTTTTCACGAAAA 58.628 32.000 0.83 0.83 38.40 2.29
29 30 5.929278 TGACGAACTTTCTTTTTCACGAAA 58.071 33.333 0.00 0.00 0.00 3.46
30 31 5.533533 TGACGAACTTTCTTTTTCACGAA 57.466 34.783 0.00 0.00 0.00 3.85
31 32 5.533533 TTGACGAACTTTCTTTTTCACGA 57.466 34.783 0.00 0.00 0.00 4.35
32 33 6.605496 TTTTGACGAACTTTCTTTTTCACG 57.395 33.333 0.00 0.00 0.00 4.35
33 34 8.394667 AGATTTTGACGAACTTTCTTTTTCAC 57.605 30.769 0.00 0.00 0.00 3.18
38 39 9.665264 GTTGATAGATTTTGACGAACTTTCTTT 57.335 29.630 0.00 0.00 0.00 2.52
39 40 8.836413 TGTTGATAGATTTTGACGAACTTTCTT 58.164 29.630 0.00 0.00 0.00 2.52
40 41 8.378172 TGTTGATAGATTTTGACGAACTTTCT 57.622 30.769 0.00 0.00 0.00 2.52
41 42 9.055248 CATGTTGATAGATTTTGACGAACTTTC 57.945 33.333 0.00 0.00 0.00 2.62
42 43 8.023128 CCATGTTGATAGATTTTGACGAACTTT 58.977 33.333 0.00 0.00 0.00 2.66
43 44 7.362056 CCCATGTTGATAGATTTTGACGAACTT 60.362 37.037 0.00 0.00 0.00 2.66
44 45 6.094048 CCCATGTTGATAGATTTTGACGAACT 59.906 38.462 0.00 0.00 0.00 3.01
45 46 6.093495 TCCCATGTTGATAGATTTTGACGAAC 59.907 38.462 0.00 0.00 0.00 3.95
46 47 6.176896 TCCCATGTTGATAGATTTTGACGAA 58.823 36.000 0.00 0.00 0.00 3.85
47 48 5.739959 TCCCATGTTGATAGATTTTGACGA 58.260 37.500 0.00 0.00 0.00 4.20
48 49 6.484643 AGATCCCATGTTGATAGATTTTGACG 59.515 38.462 0.00 0.00 0.00 4.35
49 50 7.814264 AGATCCCATGTTGATAGATTTTGAC 57.186 36.000 0.00 0.00 0.00 3.18
50 51 8.717717 ACTAGATCCCATGTTGATAGATTTTGA 58.282 33.333 0.00 0.00 0.00 2.69
51 52 8.915057 ACTAGATCCCATGTTGATAGATTTTG 57.085 34.615 0.00 0.00 0.00 2.44
52 53 9.927081 AAACTAGATCCCATGTTGATAGATTTT 57.073 29.630 0.00 0.00 0.00 1.82
53 54 9.927081 AAAACTAGATCCCATGTTGATAGATTT 57.073 29.630 0.00 0.00 0.00 2.17
54 55 9.347240 CAAAACTAGATCCCATGTTGATAGATT 57.653 33.333 0.00 0.00 0.00 2.40
55 56 8.717717 TCAAAACTAGATCCCATGTTGATAGAT 58.282 33.333 0.00 0.00 0.00 1.98
56 57 8.089625 TCAAAACTAGATCCCATGTTGATAGA 57.910 34.615 0.00 0.00 0.00 1.98
57 58 8.737168 TTCAAAACTAGATCCCATGTTGATAG 57.263 34.615 0.00 0.00 0.00 2.08
58 59 8.548025 TCTTCAAAACTAGATCCCATGTTGATA 58.452 33.333 0.00 0.00 0.00 2.15
59 60 7.405292 TCTTCAAAACTAGATCCCATGTTGAT 58.595 34.615 0.00 0.00 0.00 2.57
60 61 6.778821 TCTTCAAAACTAGATCCCATGTTGA 58.221 36.000 0.00 0.00 0.00 3.18
61 62 7.555554 AGATCTTCAAAACTAGATCCCATGTTG 59.444 37.037 0.00 0.00 38.24 3.33
62 63 7.637511 AGATCTTCAAAACTAGATCCCATGTT 58.362 34.615 0.00 0.00 38.24 2.71
63 64 7.205515 AGATCTTCAAAACTAGATCCCATGT 57.794 36.000 0.00 0.00 38.24 3.21
64 65 6.423302 CGAGATCTTCAAAACTAGATCCCATG 59.577 42.308 0.00 0.00 38.24 3.66
65 66 6.325028 TCGAGATCTTCAAAACTAGATCCCAT 59.675 38.462 0.00 0.00 38.24 4.00
66 67 5.656859 TCGAGATCTTCAAAACTAGATCCCA 59.343 40.000 0.00 0.00 38.24 4.37
67 68 5.980715 GTCGAGATCTTCAAAACTAGATCCC 59.019 44.000 0.00 0.00 38.24 3.85
68 69 5.683743 CGTCGAGATCTTCAAAACTAGATCC 59.316 44.000 0.00 1.33 38.24 3.36
69 70 5.172411 GCGTCGAGATCTTCAAAACTAGATC 59.828 44.000 0.00 0.00 37.89 2.75
70 71 5.038033 GCGTCGAGATCTTCAAAACTAGAT 58.962 41.667 0.00 0.00 0.00 1.98
71 72 4.413087 GCGTCGAGATCTTCAAAACTAGA 58.587 43.478 0.00 0.00 0.00 2.43
72 73 3.238570 CGCGTCGAGATCTTCAAAACTAG 59.761 47.826 0.00 0.00 0.00 2.57
73 74 3.120095 TCGCGTCGAGATCTTCAAAACTA 60.120 43.478 5.77 0.00 0.00 2.24
74 75 1.986378 CGCGTCGAGATCTTCAAAACT 59.014 47.619 0.00 0.00 0.00 2.66
75 76 1.983605 TCGCGTCGAGATCTTCAAAAC 59.016 47.619 5.77 0.00 0.00 2.43
76 77 2.341318 TCGCGTCGAGATCTTCAAAA 57.659 45.000 5.77 0.00 0.00 2.44
87 88 0.527600 CATTGGATTCCTCGCGTCGA 60.528 55.000 5.77 0.00 0.00 4.20
88 89 1.490693 CCATTGGATTCCTCGCGTCG 61.491 60.000 5.77 0.00 0.00 5.12
89 90 0.462047 ACCATTGGATTCCTCGCGTC 60.462 55.000 10.37 0.00 0.00 5.19
90 91 0.744414 CACCATTGGATTCCTCGCGT 60.744 55.000 10.37 0.00 0.00 6.01
91 92 0.461870 TCACCATTGGATTCCTCGCG 60.462 55.000 10.37 0.00 0.00 5.87
92 93 1.750193 TTCACCATTGGATTCCTCGC 58.250 50.000 10.37 0.00 0.00 5.03
93 94 3.426159 CGTTTTCACCATTGGATTCCTCG 60.426 47.826 10.37 3.97 0.00 4.63
94 95 3.756434 TCGTTTTCACCATTGGATTCCTC 59.244 43.478 10.37 0.00 0.00 3.71
95 96 3.761897 TCGTTTTCACCATTGGATTCCT 58.238 40.909 10.37 0.00 0.00 3.36
96 97 4.718940 ATCGTTTTCACCATTGGATTCC 57.281 40.909 10.37 0.00 0.00 3.01
97 98 4.793216 CGAATCGTTTTCACCATTGGATTC 59.207 41.667 10.37 4.73 36.55 2.52
98 99 4.457603 TCGAATCGTTTTCACCATTGGATT 59.542 37.500 10.37 0.00 0.00 3.01
99 100 4.006989 TCGAATCGTTTTCACCATTGGAT 58.993 39.130 10.37 0.00 0.00 3.41
100 101 3.403968 TCGAATCGTTTTCACCATTGGA 58.596 40.909 10.37 0.00 0.00 3.53
101 102 3.435327 TCTCGAATCGTTTTCACCATTGG 59.565 43.478 1.52 0.00 0.00 3.16
102 103 4.661993 TCTCGAATCGTTTTCACCATTG 57.338 40.909 1.52 0.00 0.00 2.82
103 104 5.880054 AATCTCGAATCGTTTTCACCATT 57.120 34.783 1.52 0.00 0.00 3.16
104 105 5.391950 CCAAATCTCGAATCGTTTTCACCAT 60.392 40.000 1.52 0.00 0.00 3.55
105 106 4.083537 CCAAATCTCGAATCGTTTTCACCA 60.084 41.667 1.52 0.00 0.00 4.17
106 107 4.153475 TCCAAATCTCGAATCGTTTTCACC 59.847 41.667 1.52 0.00 0.00 4.02
107 108 5.080068 GTCCAAATCTCGAATCGTTTTCAC 58.920 41.667 1.52 0.00 0.00 3.18
108 109 4.143200 CGTCCAAATCTCGAATCGTTTTCA 60.143 41.667 1.52 0.00 0.00 2.69
109 110 4.323751 CGTCCAAATCTCGAATCGTTTTC 58.676 43.478 1.52 0.00 0.00 2.29
110 111 3.424433 GCGTCCAAATCTCGAATCGTTTT 60.424 43.478 1.52 0.00 0.00 2.43
111 112 2.093783 GCGTCCAAATCTCGAATCGTTT 59.906 45.455 1.52 0.00 0.00 3.60
112 113 1.659098 GCGTCCAAATCTCGAATCGTT 59.341 47.619 1.52 0.00 0.00 3.85
113 114 1.278238 GCGTCCAAATCTCGAATCGT 58.722 50.000 1.52 0.00 0.00 3.73
114 115 1.005975 GTGCGTCCAAATCTCGAATCG 60.006 52.381 0.00 0.00 0.00 3.34
115 116 1.005975 CGTGCGTCCAAATCTCGAATC 60.006 52.381 0.00 0.00 0.00 2.52
116 117 0.999406 CGTGCGTCCAAATCTCGAAT 59.001 50.000 0.00 0.00 0.00 3.34
117 118 1.011968 CCGTGCGTCCAAATCTCGAA 61.012 55.000 0.00 0.00 0.00 3.71
118 119 1.445410 CCGTGCGTCCAAATCTCGA 60.445 57.895 0.00 0.00 0.00 4.04
119 120 1.289109 AACCGTGCGTCCAAATCTCG 61.289 55.000 0.00 0.00 0.00 4.04
120 121 0.872388 AAACCGTGCGTCCAAATCTC 59.128 50.000 0.00 0.00 0.00 2.75
121 122 2.172851 TAAACCGTGCGTCCAAATCT 57.827 45.000 0.00 0.00 0.00 2.40
122 123 2.481185 TCTTAAACCGTGCGTCCAAATC 59.519 45.455 0.00 0.00 0.00 2.17
123 124 2.482721 CTCTTAAACCGTGCGTCCAAAT 59.517 45.455 0.00 0.00 0.00 2.32
124 125 1.868498 CTCTTAAACCGTGCGTCCAAA 59.132 47.619 0.00 0.00 0.00 3.28
125 126 1.068895 TCTCTTAAACCGTGCGTCCAA 59.931 47.619 0.00 0.00 0.00 3.53
126 127 0.675083 TCTCTTAAACCGTGCGTCCA 59.325 50.000 0.00 0.00 0.00 4.02
127 128 2.005971 ATCTCTTAAACCGTGCGTCC 57.994 50.000 0.00 0.00 0.00 4.79
128 129 5.311271 GTTTTATCTCTTAAACCGTGCGTC 58.689 41.667 0.00 0.00 29.47 5.19
129 130 4.143263 CGTTTTATCTCTTAAACCGTGCGT 60.143 41.667 0.00 0.00 32.79 5.24
130 131 4.143263 ACGTTTTATCTCTTAAACCGTGCG 60.143 41.667 0.86 0.00 44.18 5.34
131 132 5.273523 ACGTTTTATCTCTTAAACCGTGC 57.726 39.130 0.86 0.00 44.18 5.34
132 133 7.851963 TCAAAACGTTTTATCTCTTAAACCGTG 59.148 33.333 24.79 8.65 44.82 4.94
133 134 7.918643 TCAAAACGTTTTATCTCTTAAACCGT 58.081 30.769 24.79 0.00 46.69 4.83
134 135 8.770850 TTCAAAACGTTTTATCTCTTAAACCG 57.229 30.769 24.79 8.91 40.37 4.44
149 150 7.095691 TTCGTAGATCCGTTTATTCAAAACGTT 60.096 33.333 18.32 0.00 43.53 3.99
150 151 6.365789 TTCGTAGATCCGTTTATTCAAAACGT 59.634 34.615 18.32 4.51 43.53 3.99
151 152 6.754206 TTCGTAGATCCGTTTATTCAAAACG 58.246 36.000 14.30 14.30 44.14 3.60
152 153 8.938047 TTTTCGTAGATCCGTTTATTCAAAAC 57.062 30.769 0.00 0.00 35.04 2.43
181 182 0.536460 TCGCAACCTGGGAGTTTTCC 60.536 55.000 0.00 0.00 43.23 3.13
182 183 0.591659 GTCGCAACCTGGGAGTTTTC 59.408 55.000 0.00 0.00 40.09 2.29
183 184 0.106918 TGTCGCAACCTGGGAGTTTT 60.107 50.000 0.00 0.00 40.09 2.43
184 185 0.106918 TTGTCGCAACCTGGGAGTTT 60.107 50.000 0.00 0.00 40.09 2.66
185 186 0.535102 CTTGTCGCAACCTGGGAGTT 60.535 55.000 0.00 0.00 40.09 3.01
186 187 1.071471 CTTGTCGCAACCTGGGAGT 59.929 57.895 0.00 0.00 40.09 3.85
187 188 1.071471 ACTTGTCGCAACCTGGGAG 59.929 57.895 0.00 0.00 40.09 4.30
188 189 1.227823 CACTTGTCGCAACCTGGGA 60.228 57.895 0.00 0.00 36.96 4.37
189 190 2.260869 CCACTTGTCGCAACCTGGG 61.261 63.158 0.00 0.00 0.00 4.45
190 191 2.908073 GCCACTTGTCGCAACCTGG 61.908 63.158 0.00 0.00 0.00 4.45
191 192 2.639286 GCCACTTGTCGCAACCTG 59.361 61.111 0.00 0.00 0.00 4.00
192 193 2.972505 CGCCACTTGTCGCAACCT 60.973 61.111 0.00 0.00 0.00 3.50
211 212 4.047059 AAGTGGCGCACATGCAGC 62.047 61.111 10.83 8.22 42.21 5.25
212 213 2.126618 CAAGTGGCGCACATGCAG 60.127 61.111 10.83 0.00 42.21 4.41
213 214 2.906388 ACAAGTGGCGCACATGCA 60.906 55.556 10.83 0.00 36.67 3.96
214 215 2.126734 GACAAGTGGCGCACATGC 60.127 61.111 10.83 0.00 36.67 4.06
215 216 2.174107 CGACAAGTGGCGCACATG 59.826 61.111 10.83 11.41 40.91 3.21
222 223 3.414700 CTGGTCGCGACAAGTGGC 61.415 66.667 37.26 20.87 0.00 5.01
223 224 2.738521 CCTGGTCGCGACAAGTGG 60.739 66.667 35.12 26.57 30.25 4.00
224 225 2.709125 TTCCCTGGTCGCGACAAGTG 62.709 60.000 35.12 27.66 30.25 3.16
225 226 2.035237 TTTCCCTGGTCGCGACAAGT 62.035 55.000 35.12 0.00 30.25 3.16
226 227 1.291877 CTTTCCCTGGTCGCGACAAG 61.292 60.000 37.26 34.85 32.08 3.16
227 228 1.301401 CTTTCCCTGGTCGCGACAA 60.301 57.895 37.26 28.18 0.00 3.18
228 229 2.342279 CTTTCCCTGGTCGCGACA 59.658 61.111 37.26 23.04 0.00 4.35
229 230 2.027625 CACTTTCCCTGGTCGCGAC 61.028 63.158 30.67 30.67 0.00 5.19
230 231 2.342279 CACTTTCCCTGGTCGCGA 59.658 61.111 3.71 3.71 0.00 5.87
231 232 2.742372 CCACTTTCCCTGGTCGCG 60.742 66.667 0.00 0.00 0.00 5.87
232 233 2.359975 CCCACTTTCCCTGGTCGC 60.360 66.667 0.00 0.00 0.00 5.19
233 234 2.351276 CCCCACTTTCCCTGGTCG 59.649 66.667 0.00 0.00 0.00 4.79
234 235 1.074951 CACCCCACTTTCCCTGGTC 59.925 63.158 0.00 0.00 0.00 4.02
235 236 1.293683 AACACCCCACTTTCCCTGGT 61.294 55.000 0.00 0.00 0.00 4.00
236 237 0.539669 GAACACCCCACTTTCCCTGG 60.540 60.000 0.00 0.00 0.00 4.45
237 238 0.539669 GGAACACCCCACTTTCCCTG 60.540 60.000 0.00 0.00 33.87 4.45
238 239 0.701310 AGGAACACCCCACTTTCCCT 60.701 55.000 0.00 0.00 39.86 4.20
239 240 0.187606 AAGGAACACCCCACTTTCCC 59.812 55.000 0.00 0.00 39.86 3.97
240 241 1.328279 CAAGGAACACCCCACTTTCC 58.672 55.000 0.00 0.00 39.38 3.13
241 242 0.673985 GCAAGGAACACCCCACTTTC 59.326 55.000 0.00 0.00 34.66 2.62
242 243 0.032615 TGCAAGGAACACCCCACTTT 60.033 50.000 0.00 0.00 34.66 2.66
243 244 0.032615 TTGCAAGGAACACCCCACTT 60.033 50.000 0.00 0.00 34.66 3.16
244 245 0.755327 GTTGCAAGGAACACCCCACT 60.755 55.000 0.00 0.00 34.66 4.00
245 246 1.739667 GTTGCAAGGAACACCCCAC 59.260 57.895 0.00 0.00 34.66 4.61
246 247 1.826054 CGTTGCAAGGAACACCCCA 60.826 57.895 13.85 0.00 34.66 4.96
247 248 1.515521 CTCGTTGCAAGGAACACCCC 61.516 60.000 21.17 0.00 34.66 4.95
248 249 0.818040 ACTCGTTGCAAGGAACACCC 60.818 55.000 21.17 0.00 0.00 4.61
249 250 1.529865 GTACTCGTTGCAAGGAACACC 59.470 52.381 21.17 7.45 0.00 4.16
250 251 2.475487 GAGTACTCGTTGCAAGGAACAC 59.525 50.000 21.17 19.49 0.00 3.32
251 252 2.547218 GGAGTACTCGTTGCAAGGAACA 60.547 50.000 21.17 10.13 0.00 3.18
252 253 2.067013 GGAGTACTCGTTGCAAGGAAC 58.933 52.381 21.17 17.07 0.00 3.62
253 254 1.968493 AGGAGTACTCGTTGCAAGGAA 59.032 47.619 21.17 6.38 0.00 3.36
254 255 1.629043 AGGAGTACTCGTTGCAAGGA 58.371 50.000 19.86 19.86 0.00 3.36
255 256 2.457366 AAGGAGTACTCGTTGCAAGG 57.543 50.000 25.72 12.91 36.47 3.61
256 257 6.812160 ACTAATTAAGGAGTACTCGTTGCAAG 59.188 38.462 31.33 24.45 38.07 4.01
257 258 6.588756 CACTAATTAAGGAGTACTCGTTGCAA 59.411 38.462 31.33 22.18 38.07 4.08
258 259 6.071784 TCACTAATTAAGGAGTACTCGTTGCA 60.072 38.462 31.33 21.45 38.07 4.08
259 260 6.327934 TCACTAATTAAGGAGTACTCGTTGC 58.672 40.000 31.33 13.49 38.07 4.17
260 261 8.928270 AATCACTAATTAAGGAGTACTCGTTG 57.072 34.615 31.33 20.36 38.07 4.10
261 262 9.583765 GAAATCACTAATTAAGGAGTACTCGTT 57.416 33.333 28.20 28.20 40.33 3.85
262 263 7.914346 CGAAATCACTAATTAAGGAGTACTCGT 59.086 37.037 16.56 14.43 0.00 4.18
263 264 8.127327 TCGAAATCACTAATTAAGGAGTACTCG 58.873 37.037 16.56 2.92 0.00 4.18
264 265 9.968870 ATCGAAATCACTAATTAAGGAGTACTC 57.031 33.333 14.87 14.87 0.00 2.59
270 271 9.806203 TCGTTTATCGAAATCACTAATTAAGGA 57.194 29.630 0.00 0.00 45.98 3.36
286 287 6.455360 AATTAGTACCACCTCGTTTATCGA 57.545 37.500 0.00 0.00 46.83 3.59
287 288 6.019318 CCAAATTAGTACCACCTCGTTTATCG 60.019 42.308 0.00 0.00 41.41 2.92
288 289 6.259387 CCCAAATTAGTACCACCTCGTTTATC 59.741 42.308 0.00 0.00 0.00 1.75
289 290 6.117488 CCCAAATTAGTACCACCTCGTTTAT 58.883 40.000 0.00 0.00 0.00 1.40
290 291 5.490159 CCCAAATTAGTACCACCTCGTTTA 58.510 41.667 0.00 0.00 0.00 2.01
291 292 4.329392 CCCAAATTAGTACCACCTCGTTT 58.671 43.478 0.00 0.00 0.00 3.60
292 293 3.307904 CCCCAAATTAGTACCACCTCGTT 60.308 47.826 0.00 0.00 0.00 3.85
293 294 2.237893 CCCCAAATTAGTACCACCTCGT 59.762 50.000 0.00 0.00 0.00 4.18
294 295 2.237893 ACCCCAAATTAGTACCACCTCG 59.762 50.000 0.00 0.00 0.00 4.63
295 296 4.681512 CGTACCCCAAATTAGTACCACCTC 60.682 50.000 0.00 0.00 34.22 3.85
308 309 3.706600 ATCTTTAGTGCGTACCCCAAA 57.293 42.857 0.00 0.00 0.00 3.28
309 310 3.706600 AATCTTTAGTGCGTACCCCAA 57.293 42.857 0.00 0.00 0.00 4.12
310 311 3.602483 GAAATCTTTAGTGCGTACCCCA 58.398 45.455 0.00 0.00 0.00 4.96
311 312 2.606272 CGAAATCTTTAGTGCGTACCCC 59.394 50.000 0.00 0.00 0.00 4.95
312 313 3.256558 ACGAAATCTTTAGTGCGTACCC 58.743 45.455 0.00 0.00 0.00 3.69
313 314 3.922240 TGACGAAATCTTTAGTGCGTACC 59.078 43.478 0.00 0.00 31.58 3.34
314 315 5.505165 TTGACGAAATCTTTAGTGCGTAC 57.495 39.130 0.00 0.00 31.58 3.67
315 316 6.528014 TTTTGACGAAATCTTTAGTGCGTA 57.472 33.333 0.00 0.00 31.58 4.42
316 317 5.412526 TTTTGACGAAATCTTTAGTGCGT 57.587 34.783 0.00 0.00 34.39 5.24
317 318 6.032460 GGAATTTTGACGAAATCTTTAGTGCG 59.968 38.462 1.01 0.00 36.96 5.34
318 319 7.084486 AGGAATTTTGACGAAATCTTTAGTGC 58.916 34.615 1.01 0.00 36.96 4.40
336 337 9.788960 GCGAAAGAACATTCTAATAAGGAATTT 57.211 29.630 0.00 0.00 36.28 1.82
337 338 9.178758 AGCGAAAGAACATTCTAATAAGGAATT 57.821 29.630 0.00 0.00 36.28 2.17
338 339 8.738645 AGCGAAAGAACATTCTAATAAGGAAT 57.261 30.769 0.00 0.00 36.28 3.01
339 340 7.822334 TGAGCGAAAGAACATTCTAATAAGGAA 59.178 33.333 0.00 0.00 36.28 3.36
340 341 7.277981 GTGAGCGAAAGAACATTCTAATAAGGA 59.722 37.037 0.00 0.00 36.28 3.36
341 342 7.402640 GTGAGCGAAAGAACATTCTAATAAGG 58.597 38.462 0.00 0.00 36.28 2.69
342 343 7.113658 CGTGAGCGAAAGAACATTCTAATAAG 58.886 38.462 0.00 0.00 41.33 1.73
343 344 6.035650 CCGTGAGCGAAAGAACATTCTAATAA 59.964 38.462 0.00 0.00 41.33 1.40
344 345 5.518847 CCGTGAGCGAAAGAACATTCTAATA 59.481 40.000 0.00 0.00 41.33 0.98
345 346 4.330074 CCGTGAGCGAAAGAACATTCTAAT 59.670 41.667 0.00 0.00 41.33 1.73
346 347 3.678072 CCGTGAGCGAAAGAACATTCTAA 59.322 43.478 0.00 0.00 41.33 2.10
347 348 3.250744 CCGTGAGCGAAAGAACATTCTA 58.749 45.455 0.00 0.00 41.33 2.10
348 349 2.069273 CCGTGAGCGAAAGAACATTCT 58.931 47.619 0.00 0.00 41.33 2.40
349 350 1.128692 CCCGTGAGCGAAAGAACATTC 59.871 52.381 0.00 0.00 41.33 2.67
350 351 1.156736 CCCGTGAGCGAAAGAACATT 58.843 50.000 0.00 0.00 41.33 2.71
351 352 1.298859 GCCCGTGAGCGAAAGAACAT 61.299 55.000 0.00 0.00 41.33 2.71
352 353 1.959226 GCCCGTGAGCGAAAGAACA 60.959 57.895 0.00 0.00 41.33 3.18
353 354 1.228657 AAGCCCGTGAGCGAAAGAAC 61.229 55.000 0.00 0.00 41.33 3.01
354 355 1.070786 AAGCCCGTGAGCGAAAGAA 59.929 52.632 0.00 0.00 41.33 2.52
355 356 1.667830 CAAGCCCGTGAGCGAAAGA 60.668 57.895 0.00 0.00 41.33 2.52
356 357 2.680913 CCAAGCCCGTGAGCGAAAG 61.681 63.158 0.00 0.00 41.33 2.62
357 358 2.668212 CCAAGCCCGTGAGCGAAA 60.668 61.111 0.00 0.00 41.33 3.46
358 359 4.697756 CCCAAGCCCGTGAGCGAA 62.698 66.667 0.00 0.00 41.33 4.70
361 362 3.406595 ATAGCCCAAGCCCGTGAGC 62.407 63.158 0.00 0.00 41.25 4.26
362 363 1.524621 CATAGCCCAAGCCCGTGAG 60.525 63.158 0.00 0.00 41.25 3.51
363 364 1.847798 AACATAGCCCAAGCCCGTGA 61.848 55.000 0.00 0.00 41.25 4.35
364 365 1.376609 GAACATAGCCCAAGCCCGTG 61.377 60.000 0.00 0.00 41.25 4.94
365 366 1.077716 GAACATAGCCCAAGCCCGT 60.078 57.895 0.00 0.00 41.25 5.28
366 367 0.394352 AAGAACATAGCCCAAGCCCG 60.394 55.000 0.00 0.00 41.25 6.13
367 368 1.393603 GAAGAACATAGCCCAAGCCC 58.606 55.000 0.00 0.00 41.25 5.19
368 369 1.393603 GGAAGAACATAGCCCAAGCC 58.606 55.000 0.00 0.00 41.25 4.35
369 370 1.017387 CGGAAGAACATAGCCCAAGC 58.983 55.000 0.00 0.00 40.32 4.01
370 371 2.403252 ACGGAAGAACATAGCCCAAG 57.597 50.000 0.00 0.00 0.00 3.61
371 372 2.871096 AACGGAAGAACATAGCCCAA 57.129 45.000 0.00 0.00 0.00 4.12
372 373 3.602483 GTTAACGGAAGAACATAGCCCA 58.398 45.455 0.00 0.00 0.00 5.36
373 374 2.606272 CGTTAACGGAAGAACATAGCCC 59.394 50.000 20.24 0.00 35.37 5.19
374 375 2.030091 GCGTTAACGGAAGAACATAGCC 59.970 50.000 27.82 4.07 40.23 3.93
375 376 2.928116 AGCGTTAACGGAAGAACATAGC 59.072 45.455 27.82 7.75 40.23 2.97
376 377 4.201685 CCAAGCGTTAACGGAAGAACATAG 60.202 45.833 27.82 5.55 40.23 2.23
377 378 3.680937 CCAAGCGTTAACGGAAGAACATA 59.319 43.478 27.82 0.00 40.23 2.29
378 379 2.482721 CCAAGCGTTAACGGAAGAACAT 59.517 45.455 27.82 1.73 40.23 2.71
379 380 1.868498 CCAAGCGTTAACGGAAGAACA 59.132 47.619 27.82 0.00 40.23 3.18
380 381 1.196127 CCCAAGCGTTAACGGAAGAAC 59.804 52.381 27.82 11.11 40.23 3.01
381 382 1.515081 CCCAAGCGTTAACGGAAGAA 58.485 50.000 27.82 0.00 40.23 2.52
382 383 0.952010 GCCCAAGCGTTAACGGAAGA 60.952 55.000 27.82 0.00 40.23 2.87
383 384 1.500396 GCCCAAGCGTTAACGGAAG 59.500 57.895 27.82 8.74 40.23 3.46
384 385 1.967494 GGCCCAAGCGTTAACGGAA 60.967 57.895 27.82 0.00 41.24 4.30
385 386 2.358984 GGCCCAAGCGTTAACGGA 60.359 61.111 27.82 0.00 41.24 4.69
386 387 3.795342 CGGCCCAAGCGTTAACGG 61.795 66.667 27.82 12.81 41.24 4.44
387 388 1.290491 TAACGGCCCAAGCGTTAACG 61.290 55.000 23.40 23.40 41.24 3.18
388 389 0.166597 GTAACGGCCCAAGCGTTAAC 59.833 55.000 0.00 0.00 38.64 2.01
389 390 0.035176 AGTAACGGCCCAAGCGTTAA 59.965 50.000 0.00 0.00 38.64 2.01
390 391 0.035176 AAGTAACGGCCCAAGCGTTA 59.965 50.000 0.00 0.00 41.24 3.18
391 392 0.820482 AAAGTAACGGCCCAAGCGTT 60.820 50.000 0.00 0.00 41.24 4.84
392 393 0.820482 AAAAGTAACGGCCCAAGCGT 60.820 50.000 0.00 0.00 41.24 5.07
393 394 0.312729 AAAAAGTAACGGCCCAAGCG 59.687 50.000 0.00 0.00 41.24 4.68
394 395 3.861276 ATAAAAAGTAACGGCCCAAGC 57.139 42.857 0.00 0.00 38.76 4.01
395 396 4.490743 CCAATAAAAAGTAACGGCCCAAG 58.509 43.478 0.00 0.00 0.00 3.61
396 397 3.258622 CCCAATAAAAAGTAACGGCCCAA 59.741 43.478 0.00 0.00 0.00 4.12
397 398 2.826725 CCCAATAAAAAGTAACGGCCCA 59.173 45.455 0.00 0.00 0.00 5.36
398 399 2.417651 GCCCAATAAAAAGTAACGGCCC 60.418 50.000 0.00 0.00 0.00 5.80
399 400 2.883574 GCCCAATAAAAAGTAACGGCC 58.116 47.619 0.00 0.00 0.00 6.13
400 401 2.494471 AGGCCCAATAAAAAGTAACGGC 59.506 45.455 0.00 0.00 0.00 5.68
401 402 3.119280 CCAGGCCCAATAAAAAGTAACGG 60.119 47.826 0.00 0.00 0.00 4.44
402 403 3.119280 CCCAGGCCCAATAAAAAGTAACG 60.119 47.826 0.00 0.00 0.00 3.18
403 404 4.090819 TCCCAGGCCCAATAAAAAGTAAC 58.909 43.478 0.00 0.00 0.00 2.50
404 405 4.405756 TCCCAGGCCCAATAAAAAGTAA 57.594 40.909 0.00 0.00 0.00 2.24
405 406 4.405756 TTCCCAGGCCCAATAAAAAGTA 57.594 40.909 0.00 0.00 0.00 2.24
406 407 3.268034 TTCCCAGGCCCAATAAAAAGT 57.732 42.857 0.00 0.00 0.00 2.66
407 408 4.632327 TTTTCCCAGGCCCAATAAAAAG 57.368 40.909 0.00 0.00 0.00 2.27
430 431 9.232473 GGTGATTTGTATACTTCTTTCTTCCTT 57.768 33.333 4.17 0.00 0.00 3.36
431 432 7.829706 GGGTGATTTGTATACTTCTTTCTTCCT 59.170 37.037 4.17 0.00 0.00 3.36
432 433 7.829706 AGGGTGATTTGTATACTTCTTTCTTCC 59.170 37.037 4.17 0.00 0.00 3.46
433 434 8.794335 AGGGTGATTTGTATACTTCTTTCTTC 57.206 34.615 4.17 0.00 0.00 2.87
488 493 4.517453 TGATTTGTCCCGGTTTTCAGTTAG 59.483 41.667 0.00 0.00 0.00 2.34
533 538 4.290196 ACCACTAAAGGGTGCTATTAACCA 59.710 41.667 0.00 0.00 39.65 3.67
695 712 1.679032 GGTGAGGTGGGGATTTTCTCG 60.679 57.143 0.00 0.00 0.00 4.04
952 1619 1.294041 TACTCCATTGGGCCATGTCA 58.706 50.000 7.26 0.00 0.00 3.58
1663 4465 5.939447 TCCAAAAGAAGGAAATGGCAAAAT 58.061 33.333 0.00 0.00 30.71 1.82
2227 5875 1.001860 GTTCAGAGAAGTGCTCCAGCT 59.998 52.381 0.00 0.00 45.10 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.