Multiple sequence alignment - TraesCS6D01G313600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G313600 chr6D 100.000 5457 0 0 1 5457 422211896 422206440 0.000000e+00 10078.0
1 TraesCS6D01G313600 chr6D 91.118 608 38 8 219 819 421032857 421033455 0.000000e+00 809.0
2 TraesCS6D01G313600 chr6D 86.139 101 8 5 664 762 421650119 421650023 2.690000e-18 104.0
3 TraesCS6D01G313600 chr6B 92.163 3994 187 55 913 4862 636592776 636588865 0.000000e+00 5526.0
4 TraesCS6D01G313600 chr6B 91.504 565 31 9 258 819 634569001 634569551 0.000000e+00 761.0
5 TraesCS6D01G313600 chr6B 90.300 567 31 11 234 796 636706546 636706000 0.000000e+00 721.0
6 TraesCS6D01G313600 chr6B 84.661 502 41 12 4965 5457 636587186 636586712 8.280000e-128 468.0
7 TraesCS6D01G313600 chr6B 83.333 138 14 5 5325 5457 636490378 636490511 9.600000e-23 119.0
8 TraesCS6D01G313600 chr6B 78.846 156 16 9 126 269 634566473 634566623 7.530000e-14 89.8
9 TraesCS6D01G313600 chr6A 93.119 1584 65 15 3191 4757 564985340 564983784 0.000000e+00 2281.0
10 TraesCS6D01G313600 chr6A 91.099 1292 75 22 921 2192 564987878 564986607 0.000000e+00 1712.0
11 TraesCS6D01G313600 chr6A 96.538 1011 31 3 2185 3191 564986413 564985403 0.000000e+00 1670.0
12 TraesCS6D01G313600 chr6A 90.049 412 23 10 415 819 564280627 564281027 8.100000e-143 518.0
13 TraesCS6D01G313600 chr6A 83.665 251 17 11 5208 5455 564911788 564911559 1.190000e-51 215.0
14 TraesCS6D01G313600 chr6A 90.435 115 6 1 731 845 564988107 564987998 4.400000e-31 147.0
15 TraesCS6D01G313600 chr6A 82.609 138 15 5 5325 5457 564973741 564973874 4.470000e-21 113.0
16 TraesCS6D01G313600 chr4B 82.493 1428 154 49 3201 4567 530967197 530965805 0.000000e+00 1164.0
17 TraesCS6D01G313600 chr4B 82.021 673 75 22 1090 1746 530969466 530968824 1.040000e-146 531.0
18 TraesCS6D01G313600 chr4B 82.155 594 58 11 2646 3191 530967859 530967266 2.980000e-127 466.0
19 TraesCS6D01G313600 chr4B 89.668 271 20 2 1642 1907 657567213 657567480 6.770000e-89 339.0
20 TraesCS6D01G313600 chr4B 83.235 340 43 4 1768 2093 530968679 530968340 3.200000e-77 300.0
21 TraesCS6D01G313600 chr4A 82.249 1414 146 53 3192 4540 33865395 33866768 0.000000e+00 1123.0
22 TraesCS6D01G313600 chr4A 79.432 1337 153 69 980 2250 33861277 33862557 0.000000e+00 833.0
23 TraesCS6D01G313600 chr4A 83.716 436 45 12 2791 3202 33864913 33865346 6.630000e-104 388.0
24 TraesCS6D01G313600 chr4D 81.961 1397 167 55 3192 4537 432589135 432590497 0.000000e+00 1105.0
25 TraesCS6D01G313600 chr4D 80.426 1175 138 42 980 2100 432586794 432587930 0.000000e+00 811.0
26 TraesCS6D01G313600 chr4D 84.434 424 43 11 2791 3191 432588652 432589075 3.960000e-106 396.0
27 TraesCS6D01G313600 chr5B 86.898 519 54 10 239 752 672581871 672582380 2.210000e-158 569.0
28 TraesCS6D01G313600 chr5B 88.571 280 24 2 1642 1916 489396108 489395832 3.150000e-87 333.0
29 TraesCS6D01G313600 chr5B 88.211 246 20 3 1642 1882 458892988 458893229 8.950000e-73 285.0
30 TraesCS6D01G313600 chr7D 98.319 238 4 0 4911 5148 266046443 266046206 8.450000e-113 418.0
31 TraesCS6D01G313600 chr5A 89.299 271 21 2 1642 1907 4426357 4426624 3.150000e-87 333.0
32 TraesCS6D01G313600 chr5A 88.930 271 21 3 1642 1907 542386281 542386547 5.270000e-85 326.0
33 TraesCS6D01G313600 chrUn 88.940 217 16 2 1642 1853 308010900 308010687 1.510000e-65 261.0
34 TraesCS6D01G313600 chrUn 88.940 217 16 2 1642 1853 308108045 308108258 1.510000e-65 261.0
35 TraesCS6D01G313600 chr7B 97.872 47 1 0 5170 5216 662962016 662962062 1.260000e-11 82.4
36 TraesCS6D01G313600 chr5D 79.592 98 16 2 5208 5301 122624800 122624897 3.530000e-07 67.6
37 TraesCS6D01G313600 chr2A 79.787 94 15 3 5211 5301 196518419 196518327 1.270000e-06 65.8
38 TraesCS6D01G313600 chr2A 89.796 49 4 1 5219 5267 12580281 12580234 1.640000e-05 62.1
39 TraesCS6D01G313600 chr2B 95.000 40 2 0 5170 5209 19879498 19879537 4.560000e-06 63.9
40 TraesCS6D01G313600 chr3D 100.000 30 0 0 2623 2652 608407912 608407941 7.640000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G313600 chr6D 422206440 422211896 5456 True 10078.000000 10078 100.000000 1 5457 1 chr6D.!!$R2 5456
1 TraesCS6D01G313600 chr6D 421032857 421033455 598 False 809.000000 809 91.118000 219 819 1 chr6D.!!$F1 600
2 TraesCS6D01G313600 chr6B 636586712 636592776 6064 True 2997.000000 5526 88.412000 913 5457 2 chr6B.!!$R2 4544
3 TraesCS6D01G313600 chr6B 636706000 636706546 546 True 721.000000 721 90.300000 234 796 1 chr6B.!!$R1 562
4 TraesCS6D01G313600 chr6B 634566473 634569551 3078 False 425.400000 761 85.175000 126 819 2 chr6B.!!$F2 693
5 TraesCS6D01G313600 chr6A 564983784 564988107 4323 True 1452.500000 2281 92.797750 731 4757 4 chr6A.!!$R2 4026
6 TraesCS6D01G313600 chr4B 530965805 530969466 3661 True 615.250000 1164 82.476000 1090 4567 4 chr4B.!!$R1 3477
7 TraesCS6D01G313600 chr4A 33861277 33866768 5491 False 781.333333 1123 81.799000 980 4540 3 chr4A.!!$F1 3560
8 TraesCS6D01G313600 chr4D 432586794 432590497 3703 False 770.666667 1105 82.273667 980 4537 3 chr4D.!!$F1 3557
9 TraesCS6D01G313600 chr5B 672581871 672582380 509 False 569.000000 569 86.898000 239 752 1 chr5B.!!$F2 513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
55 56 0.106569 TCATGGTCATGGTGATGCCC 60.107 55.0 10.61 0.0 39.24 5.36 F
796 3226 0.319900 CCGTTGGGACTGTGAGTCTG 60.320 60.0 3.85 0.0 44.46 3.51 F
1520 4086 0.099436 GCAACCTCGTGCATGAATCC 59.901 55.0 10.41 0.0 44.29 3.01 F
2051 4758 1.168407 TGCTTTCTCACTGTGCTGGC 61.168 55.0 2.12 3.9 0.00 4.85 F
3809 8822 2.741122 TGCGAACCTTAAACAACACG 57.259 45.0 0.00 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1375 3938 0.457337 CGCATCCTGCTTTTTCTGCC 60.457 55.0 0.00 0.0 42.25 4.85 R
1907 4614 1.198094 TTCTCTCCCCATGTCCGCAA 61.198 55.0 0.00 0.0 0.00 4.85 R
3112 7972 1.303309 CCGAGAAAGCATGGCCTTAG 58.697 55.0 3.32 0.0 0.00 2.18 R
3826 8847 1.154814 TACAAGTCAGCAACGCGCAA 61.155 50.0 5.73 0.0 46.13 4.85 R
5326 12037 0.037697 TCACGCTGCACCGTTATTCT 60.038 50.0 3.86 0.0 39.83 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.820725 AATTTGATGGTAATCACATTTATGGTG 57.179 29.630 0.00 0.00 39.20 4.17
41 42 4.888823 TCACATTTATGGTGATGGTCATGG 59.111 41.667 0.00 0.00 40.16 3.66
42 43 4.646040 CACATTTATGGTGATGGTCATGGT 59.354 41.667 0.00 0.00 38.54 3.55
43 44 4.889409 ACATTTATGGTGATGGTCATGGTC 59.111 41.667 0.00 0.00 0.00 4.02
44 45 4.582973 TTTATGGTGATGGTCATGGTCA 57.417 40.909 0.00 0.00 0.00 4.02
45 46 4.794311 TTATGGTGATGGTCATGGTCAT 57.206 40.909 0.00 0.00 0.00 3.06
46 47 2.423446 TGGTGATGGTCATGGTCATG 57.577 50.000 4.67 4.67 40.09 3.07
47 48 1.064537 TGGTGATGGTCATGGTCATGG 60.065 52.381 10.61 0.00 39.24 3.66
48 49 1.064463 GGTGATGGTCATGGTCATGGT 60.064 52.381 10.61 0.00 39.24 3.55
49 50 2.019249 GTGATGGTCATGGTCATGGTG 58.981 52.381 10.61 0.00 39.24 4.17
50 51 1.914798 TGATGGTCATGGTCATGGTGA 59.085 47.619 10.61 0.00 39.24 4.02
51 52 2.510800 TGATGGTCATGGTCATGGTGAT 59.489 45.455 10.61 1.41 39.24 3.06
52 53 2.423446 TGGTCATGGTCATGGTGATG 57.577 50.000 10.61 0.00 39.24 3.07
53 54 1.027357 GGTCATGGTCATGGTGATGC 58.973 55.000 10.61 0.00 39.24 3.91
54 55 1.027357 GTCATGGTCATGGTGATGCC 58.973 55.000 10.61 0.00 39.24 4.40
55 56 0.106569 TCATGGTCATGGTGATGCCC 60.107 55.000 10.61 0.00 39.24 5.36
56 57 0.396001 CATGGTCATGGTGATGCCCA 60.396 55.000 3.17 0.00 41.79 5.36
57 58 0.559205 ATGGTCATGGTGATGCCCAT 59.441 50.000 0.00 0.00 41.80 4.00
61 62 2.691092 ATGGTGATGCCCATGCCA 59.309 55.556 0.00 4.36 43.65 4.92
62 63 1.234820 ATGGTGATGCCCATGCCAT 59.765 52.632 7.66 7.66 43.65 4.40
63 64 1.118965 ATGGTGATGCCCATGCCATG 61.119 55.000 0.00 0.00 43.65 3.66
64 65 2.420043 GTGATGCCCATGCCATGC 59.580 61.111 0.00 0.00 36.33 4.06
65 66 2.131709 GTGATGCCCATGCCATGCT 61.132 57.895 0.00 0.00 36.33 3.79
66 67 1.830847 TGATGCCCATGCCATGCTC 60.831 57.895 0.00 0.00 36.33 4.26
67 68 1.830847 GATGCCCATGCCATGCTCA 60.831 57.895 0.00 0.00 36.33 4.26
68 69 1.152333 ATGCCCATGCCATGCTCAT 60.152 52.632 0.00 1.84 36.33 2.90
69 70 1.185618 ATGCCCATGCCATGCTCATC 61.186 55.000 0.00 0.00 36.33 2.92
70 71 1.830847 GCCCATGCCATGCTCATCA 60.831 57.895 0.00 0.00 0.00 3.07
71 72 1.185618 GCCCATGCCATGCTCATCAT 61.186 55.000 0.00 0.00 35.31 2.45
72 73 0.888619 CCCATGCCATGCTCATCATC 59.111 55.000 0.00 0.00 31.79 2.92
73 74 1.616159 CCATGCCATGCTCATCATCA 58.384 50.000 0.00 0.00 31.79 3.07
74 75 2.171003 CCATGCCATGCTCATCATCAT 58.829 47.619 0.00 0.00 31.79 2.45
75 76 2.164422 CCATGCCATGCTCATCATCATC 59.836 50.000 0.00 0.00 31.79 2.92
76 77 2.649531 TGCCATGCTCATCATCATCA 57.350 45.000 0.00 0.00 31.79 3.07
77 78 3.154827 TGCCATGCTCATCATCATCAT 57.845 42.857 0.00 0.00 31.79 2.45
78 79 3.081804 TGCCATGCTCATCATCATCATC 58.918 45.455 0.00 0.00 31.79 2.92
79 80 3.081804 GCCATGCTCATCATCATCATCA 58.918 45.455 0.00 0.00 31.79 3.07
80 81 3.696548 GCCATGCTCATCATCATCATCAT 59.303 43.478 0.00 0.00 31.79 2.45
81 82 4.201960 GCCATGCTCATCATCATCATCATC 60.202 45.833 0.00 0.00 31.79 2.92
82 83 4.943705 CCATGCTCATCATCATCATCATCA 59.056 41.667 0.00 0.00 31.79 3.07
83 84 5.415701 CCATGCTCATCATCATCATCATCAA 59.584 40.000 0.00 0.00 31.79 2.57
84 85 6.404074 CCATGCTCATCATCATCATCATCAAG 60.404 42.308 0.00 0.00 31.79 3.02
85 86 5.003804 TGCTCATCATCATCATCATCAAGG 58.996 41.667 0.00 0.00 0.00 3.61
86 87 4.142578 GCTCATCATCATCATCATCAAGGC 60.143 45.833 0.00 0.00 0.00 4.35
87 88 4.980573 TCATCATCATCATCATCAAGGCA 58.019 39.130 0.00 0.00 0.00 4.75
88 89 5.381757 TCATCATCATCATCATCAAGGCAA 58.618 37.500 0.00 0.00 0.00 4.52
89 90 5.830991 TCATCATCATCATCATCAAGGCAAA 59.169 36.000 0.00 0.00 0.00 3.68
90 91 6.322712 TCATCATCATCATCATCAAGGCAAAA 59.677 34.615 0.00 0.00 0.00 2.44
91 92 6.532988 TCATCATCATCATCAAGGCAAAAA 57.467 33.333 0.00 0.00 0.00 1.94
92 93 6.334989 TCATCATCATCATCAAGGCAAAAAC 58.665 36.000 0.00 0.00 0.00 2.43
93 94 5.725325 TCATCATCATCAAGGCAAAAACA 57.275 34.783 0.00 0.00 0.00 2.83
94 95 6.288941 TCATCATCATCAAGGCAAAAACAT 57.711 33.333 0.00 0.00 0.00 2.71
95 96 7.407393 TCATCATCATCAAGGCAAAAACATA 57.593 32.000 0.00 0.00 0.00 2.29
96 97 7.838884 TCATCATCATCAAGGCAAAAACATAA 58.161 30.769 0.00 0.00 0.00 1.90
97 98 7.977293 TCATCATCATCAAGGCAAAAACATAAG 59.023 33.333 0.00 0.00 0.00 1.73
98 99 7.465353 TCATCATCAAGGCAAAAACATAAGA 57.535 32.000 0.00 0.00 0.00 2.10
99 100 7.894708 TCATCATCAAGGCAAAAACATAAGAA 58.105 30.769 0.00 0.00 0.00 2.52
100 101 8.366401 TCATCATCAAGGCAAAAACATAAGAAA 58.634 29.630 0.00 0.00 0.00 2.52
101 102 8.991026 CATCATCAAGGCAAAAACATAAGAAAA 58.009 29.630 0.00 0.00 0.00 2.29
102 103 8.954950 TCATCAAGGCAAAAACATAAGAAAAA 57.045 26.923 0.00 0.00 0.00 1.94
124 125 6.880942 AAACAATTTTTATGCATTGCTGGT 57.119 29.167 3.54 0.00 34.26 4.00
127 128 4.822685 ATTTTTATGCATTGCTGGTCCA 57.177 36.364 3.54 0.00 0.00 4.02
135 136 1.856539 ATTGCTGGTCCACCCTCCTG 61.857 60.000 0.00 0.00 34.29 3.86
194 196 2.750657 CCATGCCTCCCACCTCTCC 61.751 68.421 0.00 0.00 0.00 3.71
323 2726 2.539750 GCTGCTGCCGAGCTAAATAAAC 60.540 50.000 3.85 0.00 46.39 2.01
329 2732 2.896168 CCGAGCTAAATAAACCGGTGA 58.104 47.619 8.52 0.00 33.02 4.02
588 3007 1.502163 GCATCGAAGCAATCCTCCCG 61.502 60.000 7.93 0.00 0.00 5.14
621 3040 0.988145 ATCAGGCGAGGGATTGGGAA 60.988 55.000 0.00 0.00 0.00 3.97
705 3132 3.123804 GGAGATCGCGATGAGCTTTTTA 58.876 45.455 29.09 0.00 45.13 1.52
709 3136 6.073765 GGAGATCGCGATGAGCTTTTTATTTA 60.074 38.462 29.09 0.00 45.13 1.40
711 3138 7.865707 AGATCGCGATGAGCTTTTTATTTATT 58.134 30.769 29.09 0.00 41.58 1.40
712 3139 8.345565 AGATCGCGATGAGCTTTTTATTTATTT 58.654 29.630 29.09 0.00 41.58 1.40
713 3140 8.856490 ATCGCGATGAGCTTTTTATTTATTTT 57.144 26.923 23.04 0.00 45.59 1.82
715 3142 9.433317 TCGCGATGAGCTTTTTATTTATTTTAG 57.567 29.630 3.71 0.00 45.59 1.85
763 3193 0.961753 TGAAAGAGAGAGCACGAGCA 59.038 50.000 7.77 0.00 45.49 4.26
764 3194 1.067985 TGAAAGAGAGAGCACGAGCAG 60.068 52.381 7.77 0.00 45.49 4.24
765 3195 0.965439 AAAGAGAGAGCACGAGCAGT 59.035 50.000 7.77 0.00 45.49 4.40
766 3196 1.827681 AAGAGAGAGCACGAGCAGTA 58.172 50.000 7.77 0.00 45.49 2.74
767 3197 1.827681 AGAGAGAGCACGAGCAGTAA 58.172 50.000 7.77 0.00 45.49 2.24
796 3226 0.319900 CCGTTGGGACTGTGAGTCTG 60.320 60.000 3.85 0.00 44.46 3.51
845 3275 3.415186 CCTCTTAAGGCCAGCCCA 58.585 61.111 5.01 0.00 35.37 5.36
846 3276 1.225704 CCTCTTAAGGCCAGCCCAG 59.774 63.158 5.01 0.00 35.37 4.45
847 3277 1.225704 CTCTTAAGGCCAGCCCAGG 59.774 63.158 5.01 0.00 36.58 4.45
848 3278 1.541368 TCTTAAGGCCAGCCCAGGT 60.541 57.895 5.01 0.00 36.58 4.00
849 3279 1.077429 CTTAAGGCCAGCCCAGGTC 60.077 63.158 5.01 0.00 36.58 3.85
850 3280 2.876368 CTTAAGGCCAGCCCAGGTCG 62.876 65.000 5.01 0.00 38.64 4.79
861 3291 3.834732 CCAGGTCGGGACAGTAAAG 57.165 57.895 0.75 0.00 0.00 1.85
862 3292 1.263356 CCAGGTCGGGACAGTAAAGA 58.737 55.000 0.75 0.00 0.00 2.52
863 3293 1.204941 CCAGGTCGGGACAGTAAAGAG 59.795 57.143 0.75 0.00 0.00 2.85
864 3294 2.168496 CAGGTCGGGACAGTAAAGAGA 58.832 52.381 0.75 0.00 0.00 3.10
865 3295 2.164624 CAGGTCGGGACAGTAAAGAGAG 59.835 54.545 0.75 0.00 0.00 3.20
866 3296 2.169330 GGTCGGGACAGTAAAGAGAGT 58.831 52.381 0.75 0.00 0.00 3.24
867 3297 3.009916 AGGTCGGGACAGTAAAGAGAGTA 59.990 47.826 0.75 0.00 0.00 2.59
868 3298 3.952967 GGTCGGGACAGTAAAGAGAGTAT 59.047 47.826 0.75 0.00 0.00 2.12
869 3299 5.104193 AGGTCGGGACAGTAAAGAGAGTATA 60.104 44.000 0.75 0.00 0.00 1.47
870 3300 5.008514 GGTCGGGACAGTAAAGAGAGTATAC 59.991 48.000 0.75 0.00 0.00 1.47
871 3301 5.821995 GTCGGGACAGTAAAGAGAGTATACT 59.178 44.000 4.68 4.68 0.00 2.12
886 3316 1.179814 ATACTGGCCCCGACTCGATC 61.180 60.000 0.00 0.00 0.00 3.69
889 3319 3.967335 GGCCCCGACTCGATCTCG 61.967 72.222 0.00 5.81 41.45 4.04
913 3343 3.949885 AAAAATCCGGCCCCGACCC 62.950 63.158 8.54 0.00 42.83 4.46
1011 3526 1.107114 ACGAGGAGATGCTCGACATT 58.893 50.000 27.08 4.90 44.85 2.71
1138 3680 2.509336 CGTGGCGCCAGAGTAAGG 60.509 66.667 33.73 8.66 0.00 2.69
1179 3728 1.961180 AACCTTCCAGATCCGCGGAG 61.961 60.000 33.87 19.76 31.51 4.63
1301 3860 3.252484 CGTCCCGCGTCGATTTCC 61.252 66.667 4.92 0.00 35.54 3.13
1302 3861 2.183555 GTCCCGCGTCGATTTCCT 59.816 61.111 4.92 0.00 0.00 3.36
1303 3862 1.447314 GTCCCGCGTCGATTTCCTT 60.447 57.895 4.92 0.00 0.00 3.36
1304 3863 1.017701 GTCCCGCGTCGATTTCCTTT 61.018 55.000 4.92 0.00 0.00 3.11
1310 3869 2.661594 GCGTCGATTTCCTTTGCTTTT 58.338 42.857 0.00 0.00 0.00 2.27
1321 3880 4.765273 TCCTTTGCTTTTCTTTGGTTTCC 58.235 39.130 0.00 0.00 0.00 3.13
1338 3900 0.616891 TCCTTTTTAGTCCTCGGGGC 59.383 55.000 0.00 0.00 0.00 5.80
1451 4017 4.785453 CTGGCCGCCAAGGAGACC 62.785 72.222 14.45 0.00 45.00 3.85
1520 4086 0.099436 GCAACCTCGTGCATGAATCC 59.901 55.000 10.41 0.00 44.29 3.01
1580 4147 1.503347 ACCCCACAATTCCTGGTTCTT 59.497 47.619 0.00 0.00 0.00 2.52
1585 4152 3.503748 CCACAATTCCTGGTTCTTCAGAC 59.496 47.826 0.00 0.00 36.93 3.51
1586 4153 4.392940 CACAATTCCTGGTTCTTCAGACT 58.607 43.478 0.00 0.00 36.93 3.24
1589 4156 4.828072 ATTCCTGGTTCTTCAGACTACC 57.172 45.455 0.00 0.00 36.93 3.18
1633 4201 8.645814 TGACTTTGTGAAAGATACTACTAGGA 57.354 34.615 3.11 0.00 41.02 2.94
1634 4202 8.740906 TGACTTTGTGAAAGATACTACTAGGAG 58.259 37.037 0.00 0.00 41.02 3.69
1635 4203 8.653036 ACTTTGTGAAAGATACTACTAGGAGT 57.347 34.615 13.42 13.42 41.02 3.85
1636 4204 9.750783 ACTTTGTGAAAGATACTACTAGGAGTA 57.249 33.333 17.32 17.32 41.02 2.59
1720 4291 6.108687 TGTTTCTGCTGTCAGTATTCCTATG 58.891 40.000 0.93 0.00 41.10 2.23
1721 4292 6.070824 TGTTTCTGCTGTCAGTATTCCTATGA 60.071 38.462 0.93 0.00 41.10 2.15
1781 4475 4.244862 GCATTACATTGAGTTGGGTTTGG 58.755 43.478 0.00 0.00 0.00 3.28
1984 4691 3.678915 TGCATAATGCTTGACATCGTG 57.321 42.857 0.00 0.00 45.31 4.35
2020 4727 5.639082 GGGTAAATGCTCAAAAACAATCCTG 59.361 40.000 0.00 0.00 0.00 3.86
2027 4734 4.370917 CTCAAAAACAATCCTGTGTTGGG 58.629 43.478 0.00 0.00 40.86 4.12
2029 4736 1.786937 AAACAATCCTGTGTTGGGCA 58.213 45.000 0.00 0.00 40.86 5.36
2042 4749 2.224018 TGTTGGGCAAATGCTTTCTCAC 60.224 45.455 5.25 0.00 41.70 3.51
2049 4756 3.305964 CAAATGCTTTCTCACTGTGCTG 58.694 45.455 2.12 0.00 0.00 4.41
2051 4758 1.168407 TGCTTTCTCACTGTGCTGGC 61.168 55.000 2.12 3.90 0.00 4.85
2122 4832 4.242475 TGCCTACAGTTGTCGTAATGAAG 58.758 43.478 0.00 0.00 0.00 3.02
2136 4846 6.691388 GTCGTAATGAAGTGCTTCTTTTGTTT 59.309 34.615 15.11 3.68 40.14 2.83
2141 4851 5.237048 TGAAGTGCTTCTTTTGTTTTGCTT 58.763 33.333 12.44 0.00 40.14 3.91
2166 4876 3.126831 GTCATTCTAGAATGGCCGTCTG 58.873 50.000 34.37 16.29 45.08 3.51
2196 5115 4.202121 TGTTCTACCTCTCTGTGACACAAC 60.202 45.833 10.02 1.48 0.00 3.32
2275 5194 9.850628 GTTTTAGGGTGACAAATATAGGTTTTC 57.149 33.333 0.00 0.00 0.00 2.29
2390 5362 9.515226 ACTATAATTTCTGGTTTCAACTAGCAA 57.485 29.630 0.00 0.00 37.42 3.91
2519 5570 6.127810 ACAATTGCTGTGCTTGATACATAG 57.872 37.500 5.05 0.00 36.69 2.23
2621 5673 5.279356 CGGTACTCTCTTGAACTAAAACCCT 60.279 44.000 0.00 0.00 0.00 4.34
2638 5690 5.982890 AACCCTGACACTTATTTTGGATG 57.017 39.130 0.00 0.00 0.00 3.51
3148 8018 3.118555 TCTCGGGGTGTGGTAATGTATTG 60.119 47.826 0.00 0.00 0.00 1.90
3217 8213 8.705594 CCTTCCATTTCCAGTTCTAACTATCTA 58.294 37.037 0.00 0.00 37.08 1.98
3227 8223 7.918562 CCAGTTCTAACTATCTAGCAAGTCTTC 59.081 40.741 0.00 0.00 37.08 2.87
3748 8761 6.072064 GGGAAATGCATGAGGAGATGATTAAG 60.072 42.308 0.00 0.00 0.00 1.85
3808 8821 3.242016 GCTTTGCGAACCTTAAACAACAC 59.758 43.478 0.00 0.00 0.00 3.32
3809 8822 2.741122 TGCGAACCTTAAACAACACG 57.259 45.000 0.00 0.00 0.00 4.49
3826 8847 2.693591 ACACGGTGTTGATATCCTCGAT 59.306 45.455 8.21 0.00 0.00 3.59
3841 8862 2.863153 GATTGCGCGTTGCTGACT 59.137 55.556 8.43 0.00 46.63 3.41
3909 8959 3.614616 CGATTGTCTCTGGTGCTCTTAAC 59.385 47.826 0.00 0.00 0.00 2.01
4108 9184 6.114187 AGTAGATCAAAATGTCTGACCACA 57.886 37.500 5.17 0.00 0.00 4.17
4205 9286 1.202818 GCAACTGAGAGGACCCTTTGT 60.203 52.381 0.00 0.00 0.00 2.83
4397 9486 2.154462 CCAGTTTCCGAAGACAGCATT 58.846 47.619 0.00 0.00 0.00 3.56
4402 9491 5.625311 CAGTTTCCGAAGACAGCATTTTAAC 59.375 40.000 0.00 0.00 0.00 2.01
4406 9495 3.443681 CCGAAGACAGCATTTTAACCCAT 59.556 43.478 0.00 0.00 0.00 4.00
4408 9497 4.438744 CGAAGACAGCATTTTAACCCATCC 60.439 45.833 0.00 0.00 0.00 3.51
4409 9498 4.046286 AGACAGCATTTTAACCCATCCA 57.954 40.909 0.00 0.00 0.00 3.41
4410 9499 4.415596 AGACAGCATTTTAACCCATCCAA 58.584 39.130 0.00 0.00 0.00 3.53
4411 9500 5.025453 AGACAGCATTTTAACCCATCCAAT 58.975 37.500 0.00 0.00 0.00 3.16
4412 9501 6.194235 AGACAGCATTTTAACCCATCCAATA 58.806 36.000 0.00 0.00 0.00 1.90
4444 9548 5.660460 GTTTATTTTGTATTCTGGCAGGGG 58.340 41.667 15.73 0.00 0.00 4.79
4471 9575 1.066143 GCTTGAGCTGTAAGGGTAGCA 60.066 52.381 0.00 0.00 42.29 3.49
4504 9627 4.209538 TGTTTCCAGGCAGATAATGATGG 58.790 43.478 0.00 0.00 38.20 3.51
4528 9651 9.003145 TGGATCCTTCCTTTTATTAATCTCTGA 57.997 33.333 14.23 0.00 43.07 3.27
4544 9668 1.012086 CTGAATCGTCTGTGGCATGG 58.988 55.000 0.00 0.00 0.00 3.66
4599 9725 6.048509 GGTTACAAAATATTGCAATCCAGGG 58.951 40.000 16.86 6.97 40.34 4.45
4665 9793 5.418676 ACACCCATTGCACTAATTAATTGC 58.581 37.500 11.05 7.27 36.76 3.56
4751 9881 1.736032 CGTTACCTGAGTAGCAGTGGC 60.736 57.143 0.00 0.00 43.33 5.01
4785 9915 8.555361 GGACAGAGATGAAAATGCTAAGATTAC 58.445 37.037 0.00 0.00 0.00 1.89
4786 9916 8.443953 ACAGAGATGAAAATGCTAAGATTACC 57.556 34.615 0.00 0.00 0.00 2.85
4789 9919 8.049117 AGAGATGAAAATGCTAAGATTACCACA 58.951 33.333 0.00 0.00 0.00 4.17
4790 9920 8.757982 AGATGAAAATGCTAAGATTACCACAT 57.242 30.769 0.00 0.00 0.00 3.21
4791 9921 8.627403 AGATGAAAATGCTAAGATTACCACATG 58.373 33.333 0.00 0.00 0.00 3.21
4793 9923 7.988737 TGAAAATGCTAAGATTACCACATGAG 58.011 34.615 0.00 0.00 0.00 2.90
4794 9924 6.382869 AAATGCTAAGATTACCACATGAGC 57.617 37.500 0.00 0.00 0.00 4.26
4795 9925 3.808728 TGCTAAGATTACCACATGAGCC 58.191 45.455 0.00 0.00 0.00 4.70
4796 9926 3.142174 GCTAAGATTACCACATGAGCCC 58.858 50.000 0.00 0.00 0.00 5.19
4797 9927 3.181450 GCTAAGATTACCACATGAGCCCT 60.181 47.826 0.00 0.00 0.00 5.19
4798 9928 3.567478 AAGATTACCACATGAGCCCTC 57.433 47.619 0.00 0.00 0.00 4.30
4799 9929 2.481441 AGATTACCACATGAGCCCTCA 58.519 47.619 0.00 0.00 44.59 3.86
4829 9959 3.256631 GTGTTCATTGCCTGGTCTTCAAT 59.743 43.478 0.00 0.00 0.00 2.57
4847 9977 3.047796 CAATGCTTTGTGACTTGTGAGC 58.952 45.455 4.21 0.00 0.00 4.26
4871 10865 5.238650 CCAATTAAAGGTGGCGATAGTTAGG 59.761 44.000 0.00 0.00 39.35 2.69
4879 10873 1.002087 GGCGATAGTTAGGGGGTGATG 59.998 57.143 0.00 0.00 39.35 3.07
4894 10888 1.236616 TGATGCCACCGCTCTGTTTG 61.237 55.000 0.00 0.00 35.36 2.93
4907 10901 4.495679 CGCTCTGTTTGCTCTTTGTTTACA 60.496 41.667 0.00 0.00 0.00 2.41
4917 10911 9.685828 TTTGCTCTTTGTTTACATTGGTAATAC 57.314 29.630 0.00 0.00 39.15 1.89
4931 10925 4.552355 TGGTAATACCGACTTCATATGCG 58.448 43.478 4.83 0.00 42.58 4.73
4941 10935 5.957796 CCGACTTCATATGCGTTAGTTTTTC 59.042 40.000 0.00 0.00 0.00 2.29
4942 10936 6.401688 CCGACTTCATATGCGTTAGTTTTTCA 60.402 38.462 0.00 0.00 0.00 2.69
4945 10939 8.673626 ACTTCATATGCGTTAGTTTTTCATTG 57.326 30.769 0.00 0.00 0.00 2.82
4956 10950 7.558991 GTTAGTTTTTCATTGCTCTTTTGCTC 58.441 34.615 0.00 0.00 0.00 4.26
4957 10951 5.910614 AGTTTTTCATTGCTCTTTTGCTCT 58.089 33.333 0.00 0.00 0.00 4.09
4971 10965 6.299141 TCTTTTGCTCTTGTATCAACTCCTT 58.701 36.000 0.00 0.00 0.00 3.36
4982 11688 5.719563 TGTATCAACTCCTTGGTATGTCAGA 59.280 40.000 0.00 0.00 0.00 3.27
4989 11695 1.863454 CTTGGTATGTCAGATGAGCGC 59.137 52.381 0.00 0.00 0.00 5.92
5006 11712 1.131883 GCGCTGTTTCTTCATGCTCAT 59.868 47.619 0.00 0.00 0.00 2.90
5018 11726 5.766670 TCTTCATGCTCATGTCTTTTCACTT 59.233 36.000 9.41 0.00 39.72 3.16
5034 11742 5.422666 TTCACTTCTCGACGTTACTGTAA 57.577 39.130 0.00 0.00 0.00 2.41
5080 11788 3.740141 GCTGATTCCTTGATGCATTTGGG 60.740 47.826 0.00 3.51 0.00 4.12
5082 11790 4.608269 TGATTCCTTGATGCATTTGGGTA 58.392 39.130 0.00 0.00 0.00 3.69
5098 11806 0.389426 GGTAGCCTTCAAACGCGAGA 60.389 55.000 15.93 4.59 0.00 4.04
5195 11904 3.108144 CACGGCAAGTTTCTGTCAAAAG 58.892 45.455 0.00 0.00 0.00 2.27
5209 11920 5.880332 TCTGTCAAAAGTAAACTGAAGCACT 59.120 36.000 0.00 0.00 0.00 4.40
5218 11929 7.247929 AGTAAACTGAAGCACTAAAGTTGAC 57.752 36.000 5.36 5.36 35.17 3.18
5219 11930 6.821665 AGTAAACTGAAGCACTAAAGTTGACA 59.178 34.615 12.23 0.00 36.74 3.58
5220 11931 6.699575 AAACTGAAGCACTAAAGTTGACAT 57.300 33.333 0.00 0.00 33.30 3.06
5221 11932 5.679734 ACTGAAGCACTAAAGTTGACATG 57.320 39.130 0.00 0.00 0.00 3.21
5222 11933 4.023707 ACTGAAGCACTAAAGTTGACATGC 60.024 41.667 0.00 0.00 0.00 4.06
5223 11934 3.058983 TGAAGCACTAAAGTTGACATGCG 60.059 43.478 0.00 0.00 38.12 4.73
5226 11937 1.194547 CACTAAAGTTGACATGCGCGT 59.805 47.619 8.43 0.00 0.00 6.01
5229 11940 0.874390 AAAGTTGACATGCGCGTCAT 59.126 45.000 17.11 9.21 45.03 3.06
5270 11981 3.123621 CGTTCTGAGTTGTAATGTGCTCC 59.876 47.826 0.00 0.00 0.00 4.70
5282 11993 3.988976 ATGTGCTCCTATCTTGTGTGT 57.011 42.857 0.00 0.00 0.00 3.72
5289 12000 5.187772 TGCTCCTATCTTGTGTGTCACTTAT 59.812 40.000 4.27 0.00 35.11 1.73
5290 12001 5.751028 GCTCCTATCTTGTGTGTCACTTATC 59.249 44.000 4.27 0.00 35.11 1.75
5294 12005 4.271696 TCTTGTGTGTCACTTATCAGGG 57.728 45.455 4.27 0.00 35.11 4.45
5300 12011 4.222145 GTGTGTCACTTATCAGGGTCCTAA 59.778 45.833 4.27 0.00 0.00 2.69
5304 12015 6.539103 GTGTCACTTATCAGGGTCCTAATTTC 59.461 42.308 0.00 0.00 0.00 2.17
5305 12016 6.056236 GTCACTTATCAGGGTCCTAATTTCC 58.944 44.000 0.00 0.00 0.00 3.13
5306 12017 5.970640 TCACTTATCAGGGTCCTAATTTCCT 59.029 40.000 0.00 0.00 0.00 3.36
5307 12018 6.447084 TCACTTATCAGGGTCCTAATTTCCTT 59.553 38.462 0.00 0.00 0.00 3.36
5308 12019 6.768381 CACTTATCAGGGTCCTAATTTCCTTC 59.232 42.308 0.00 0.00 0.00 3.46
5309 12020 6.447084 ACTTATCAGGGTCCTAATTTCCTTCA 59.553 38.462 0.00 0.00 0.00 3.02
5310 12021 5.796502 ATCAGGGTCCTAATTTCCTTCAA 57.203 39.130 0.00 0.00 0.00 2.69
5311 12022 5.592587 TCAGGGTCCTAATTTCCTTCAAA 57.407 39.130 0.00 0.00 0.00 2.69
5312 12023 5.321927 TCAGGGTCCTAATTTCCTTCAAAC 58.678 41.667 0.00 0.00 0.00 2.93
5313 12024 4.462834 CAGGGTCCTAATTTCCTTCAAACC 59.537 45.833 0.00 0.00 0.00 3.27
5314 12025 3.442625 GGGTCCTAATTTCCTTCAAACCG 59.557 47.826 0.00 0.00 0.00 4.44
5315 12026 4.329392 GGTCCTAATTTCCTTCAAACCGA 58.671 43.478 0.00 0.00 0.00 4.69
5316 12027 4.763279 GGTCCTAATTTCCTTCAAACCGAA 59.237 41.667 0.00 0.00 0.00 4.30
5317 12028 5.417894 GGTCCTAATTTCCTTCAAACCGAAT 59.582 40.000 0.00 0.00 31.69 3.34
5318 12029 6.322491 GTCCTAATTTCCTTCAAACCGAATG 58.678 40.000 0.00 0.00 31.69 2.67
5319 12030 6.150474 GTCCTAATTTCCTTCAAACCGAATGA 59.850 38.462 0.00 0.00 31.69 2.57
5320 12031 6.374333 TCCTAATTTCCTTCAAACCGAATGAG 59.626 38.462 0.00 0.00 31.01 2.90
5321 12032 3.915437 TTTCCTTCAAACCGAATGAGC 57.085 42.857 0.00 0.00 31.01 4.26
5322 12033 1.821216 TCCTTCAAACCGAATGAGCC 58.179 50.000 0.00 0.00 31.69 4.70
5326 12037 1.281419 TCAAACCGAATGAGCCCCTA 58.719 50.000 0.00 0.00 0.00 3.53
5334 12045 3.318017 CGAATGAGCCCCTAGAATAACG 58.682 50.000 0.00 0.00 0.00 3.18
5352 12063 1.801913 GGTGCAGCGTGACGTCTAG 60.802 63.158 17.92 11.52 0.00 2.43
5353 12064 1.209383 GTGCAGCGTGACGTCTAGA 59.791 57.895 17.92 0.00 0.00 2.43
5354 12065 1.066114 GTGCAGCGTGACGTCTAGAC 61.066 60.000 17.92 13.18 0.00 2.59
5355 12066 1.235281 TGCAGCGTGACGTCTAGACT 61.235 55.000 20.34 7.83 0.00 3.24
5356 12067 0.521659 GCAGCGTGACGTCTAGACTC 60.522 60.000 20.34 15.94 0.00 3.36
5357 12068 1.080298 CAGCGTGACGTCTAGACTCT 58.920 55.000 20.34 4.12 0.00 3.24
5358 12069 2.269172 CAGCGTGACGTCTAGACTCTA 58.731 52.381 20.34 3.75 0.00 2.43
5364 12077 1.598601 GACGTCTAGACTCTAAGGGCG 59.401 57.143 20.34 6.68 0.00 6.13
5382 12095 3.988525 TGGTGGCACGCAATTGGC 61.989 61.111 12.17 1.92 43.02 4.52
5407 12120 4.211986 ACGGAAACACACTTGCGT 57.788 50.000 0.00 0.00 46.69 5.24
5434 12147 4.944048 TCAGTTGAGTCAGTTCGATTTGA 58.056 39.130 0.00 0.00 0.00 2.69
5435 12148 5.541845 TCAGTTGAGTCAGTTCGATTTGAT 58.458 37.500 3.12 0.00 0.00 2.57
5442 12155 3.070748 TCAGTTCGATTTGATTTCGCCA 58.929 40.909 0.00 0.00 36.56 5.69
5443 12156 3.689161 TCAGTTCGATTTGATTTCGCCAT 59.311 39.130 0.00 0.00 36.56 4.40
5445 12158 2.473530 TCGATTTGATTTCGCCATGC 57.526 45.000 0.00 0.00 36.56 4.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.820725 CACCATAAATGTGATTACCATCAAATT 57.179 29.630 0.00 0.00 45.84 1.82
6 7 9.199645 TCACCATAAATGTGATTACCATCAAAT 57.800 29.630 0.00 0.00 41.30 2.32
7 8 8.586879 TCACCATAAATGTGATTACCATCAAA 57.413 30.769 0.00 0.00 41.30 2.69
8 9 8.631797 CATCACCATAAATGTGATTACCATCAA 58.368 33.333 3.29 0.00 41.30 2.57
9 10 7.231115 CCATCACCATAAATGTGATTACCATCA 59.769 37.037 3.29 0.00 35.87 3.07
10 11 7.231317 ACCATCACCATAAATGTGATTACCATC 59.769 37.037 3.29 0.00 35.87 3.51
11 12 7.068702 ACCATCACCATAAATGTGATTACCAT 58.931 34.615 3.29 0.00 35.87 3.55
12 13 6.430864 ACCATCACCATAAATGTGATTACCA 58.569 36.000 3.29 0.00 35.87 3.25
13 14 6.545666 TGACCATCACCATAAATGTGATTACC 59.454 38.462 3.29 0.00 35.87 2.85
14 15 7.566760 TGACCATCACCATAAATGTGATTAC 57.433 36.000 3.29 0.46 35.87 1.89
15 16 7.231115 CCATGACCATCACCATAAATGTGATTA 59.769 37.037 3.29 0.00 35.87 1.75
16 17 6.041182 CCATGACCATCACCATAAATGTGATT 59.959 38.462 3.29 0.00 35.87 2.57
17 18 5.537295 CCATGACCATCACCATAAATGTGAT 59.463 40.000 0.00 0.26 38.23 3.06
18 19 4.888823 CCATGACCATCACCATAAATGTGA 59.111 41.667 0.00 0.00 0.00 3.58
19 20 4.646040 ACCATGACCATCACCATAAATGTG 59.354 41.667 0.00 0.00 0.00 3.21
20 21 4.870636 ACCATGACCATCACCATAAATGT 58.129 39.130 0.00 0.00 0.00 2.71
21 22 4.888823 TGACCATGACCATCACCATAAATG 59.111 41.667 0.00 0.00 0.00 2.32
22 23 5.128033 TGACCATGACCATCACCATAAAT 57.872 39.130 0.00 0.00 0.00 1.40
23 24 4.582973 TGACCATGACCATCACCATAAA 57.417 40.909 0.00 0.00 0.00 1.40
24 25 4.463070 CATGACCATGACCATCACCATAA 58.537 43.478 4.03 0.00 41.20 1.90
25 26 3.181441 CCATGACCATGACCATCACCATA 60.181 47.826 11.28 0.00 41.20 2.74
26 27 2.423803 CCATGACCATGACCATCACCAT 60.424 50.000 11.28 0.00 41.20 3.55
27 28 1.064537 CCATGACCATGACCATCACCA 60.065 52.381 11.28 0.00 41.20 4.17
28 29 1.064463 ACCATGACCATGACCATCACC 60.064 52.381 11.28 0.00 41.20 4.02
29 30 2.019249 CACCATGACCATGACCATCAC 58.981 52.381 11.28 0.00 41.20 3.06
30 31 1.914798 TCACCATGACCATGACCATCA 59.085 47.619 11.28 0.00 41.20 3.07
31 32 2.715749 TCACCATGACCATGACCATC 57.284 50.000 11.28 0.00 41.20 3.51
32 33 2.940158 CATCACCATGACCATGACCAT 58.060 47.619 11.28 0.00 41.20 3.55
33 34 1.682702 GCATCACCATGACCATGACCA 60.683 52.381 11.28 0.00 41.20 4.02
34 35 1.027357 GCATCACCATGACCATGACC 58.973 55.000 11.28 0.00 41.20 4.02
35 36 1.027357 GGCATCACCATGACCATGAC 58.973 55.000 11.28 0.00 41.20 3.06
36 37 3.500331 GGCATCACCATGACCATGA 57.500 52.632 11.28 0.00 41.20 3.07
45 46 1.758906 CATGGCATGGGCATCACCA 60.759 57.895 19.80 0.00 45.69 4.17
46 47 3.134879 CATGGCATGGGCATCACC 58.865 61.111 19.80 0.00 45.69 4.02
47 48 2.083835 GAGCATGGCATGGGCATCAC 62.084 60.000 27.48 9.95 45.69 3.06
48 49 1.830847 GAGCATGGCATGGGCATCA 60.831 57.895 27.48 0.00 45.69 3.07
49 50 1.185618 ATGAGCATGGCATGGGCATC 61.186 55.000 27.48 11.36 45.69 3.91
51 52 1.830847 GATGAGCATGGCATGGGCA 60.831 57.895 27.48 1.12 43.71 5.36
52 53 1.185618 ATGATGAGCATGGCATGGGC 61.186 55.000 27.48 15.15 35.42 5.36
53 54 0.888619 GATGATGAGCATGGCATGGG 59.111 55.000 27.48 4.98 37.34 4.00
54 55 1.616159 TGATGATGAGCATGGCATGG 58.384 50.000 27.48 10.64 37.34 3.66
55 56 2.819608 TGATGATGATGAGCATGGCATG 59.180 45.455 22.99 22.99 37.34 4.06
56 57 3.154827 TGATGATGATGAGCATGGCAT 57.845 42.857 0.00 0.00 37.34 4.40
57 58 2.649531 TGATGATGATGAGCATGGCA 57.350 45.000 0.00 0.00 37.34 4.92
58 59 3.081804 TGATGATGATGATGAGCATGGC 58.918 45.455 0.00 0.00 37.34 4.40
59 60 4.943705 TGATGATGATGATGATGAGCATGG 59.056 41.667 0.00 0.00 37.34 3.66
60 61 6.404074 CCTTGATGATGATGATGATGAGCATG 60.404 42.308 0.00 0.00 37.34 4.06
61 62 5.649831 CCTTGATGATGATGATGATGAGCAT 59.350 40.000 0.00 0.00 40.77 3.79
62 63 5.003804 CCTTGATGATGATGATGATGAGCA 58.996 41.667 0.00 0.00 0.00 4.26
63 64 4.142578 GCCTTGATGATGATGATGATGAGC 60.143 45.833 0.00 0.00 0.00 4.26
64 65 5.003804 TGCCTTGATGATGATGATGATGAG 58.996 41.667 0.00 0.00 0.00 2.90
65 66 4.980573 TGCCTTGATGATGATGATGATGA 58.019 39.130 0.00 0.00 0.00 2.92
66 67 5.705609 TTGCCTTGATGATGATGATGATG 57.294 39.130 0.00 0.00 0.00 3.07
67 68 6.724893 TTTTGCCTTGATGATGATGATGAT 57.275 33.333 0.00 0.00 0.00 2.45
68 69 6.071278 TGTTTTTGCCTTGATGATGATGATGA 60.071 34.615 0.00 0.00 0.00 2.92
69 70 6.103330 TGTTTTTGCCTTGATGATGATGATG 58.897 36.000 0.00 0.00 0.00 3.07
70 71 6.288941 TGTTTTTGCCTTGATGATGATGAT 57.711 33.333 0.00 0.00 0.00 2.45
71 72 5.725325 TGTTTTTGCCTTGATGATGATGA 57.275 34.783 0.00 0.00 0.00 2.92
72 73 7.977293 TCTTATGTTTTTGCCTTGATGATGATG 59.023 33.333 0.00 0.00 0.00 3.07
73 74 8.070034 TCTTATGTTTTTGCCTTGATGATGAT 57.930 30.769 0.00 0.00 0.00 2.45
74 75 7.465353 TCTTATGTTTTTGCCTTGATGATGA 57.535 32.000 0.00 0.00 0.00 2.92
75 76 8.537049 TTTCTTATGTTTTTGCCTTGATGATG 57.463 30.769 0.00 0.00 0.00 3.07
76 77 9.558396 TTTTTCTTATGTTTTTGCCTTGATGAT 57.442 25.926 0.00 0.00 0.00 2.45
77 78 8.954950 TTTTTCTTATGTTTTTGCCTTGATGA 57.045 26.923 0.00 0.00 0.00 2.92
99 100 7.714703 ACCAGCAATGCATAAAAATTGTTTTT 58.285 26.923 8.35 5.81 44.43 1.94
100 101 7.274603 ACCAGCAATGCATAAAAATTGTTTT 57.725 28.000 8.35 0.00 40.15 2.43
101 102 6.072563 GGACCAGCAATGCATAAAAATTGTTT 60.073 34.615 8.35 0.00 36.39 2.83
102 103 5.412286 GGACCAGCAATGCATAAAAATTGTT 59.588 36.000 8.35 0.00 36.39 2.83
103 104 4.937015 GGACCAGCAATGCATAAAAATTGT 59.063 37.500 8.35 0.00 36.39 2.71
104 105 4.936411 TGGACCAGCAATGCATAAAAATTG 59.064 37.500 8.35 0.00 36.95 2.32
105 106 4.937015 GTGGACCAGCAATGCATAAAAATT 59.063 37.500 8.35 0.00 0.00 1.82
106 107 4.506758 GTGGACCAGCAATGCATAAAAAT 58.493 39.130 8.35 0.00 0.00 1.82
107 108 3.306641 GGTGGACCAGCAATGCATAAAAA 60.307 43.478 18.86 0.00 35.64 1.94
108 109 2.233431 GGTGGACCAGCAATGCATAAAA 59.767 45.455 18.86 0.00 35.64 1.52
109 110 1.824230 GGTGGACCAGCAATGCATAAA 59.176 47.619 18.86 0.00 35.64 1.40
110 111 1.473258 GGTGGACCAGCAATGCATAA 58.527 50.000 18.86 0.00 35.64 1.90
111 112 0.395586 GGGTGGACCAGCAATGCATA 60.396 55.000 24.45 0.00 39.85 3.14
112 113 1.683365 GGGTGGACCAGCAATGCAT 60.683 57.895 24.45 0.00 39.85 3.96
113 114 2.283101 GGGTGGACCAGCAATGCA 60.283 61.111 24.45 0.00 39.85 3.96
114 115 2.036256 AGGGTGGACCAGCAATGC 59.964 61.111 24.45 7.72 43.89 3.56
115 116 1.379044 GGAGGGTGGACCAGCAATG 60.379 63.158 24.45 0.00 43.89 2.82
116 117 1.542375 AGGAGGGTGGACCAGCAAT 60.542 57.895 24.45 12.77 43.89 3.56
117 118 2.121963 AGGAGGGTGGACCAGCAA 60.122 61.111 24.45 0.00 43.89 3.91
118 119 2.930019 CAGGAGGGTGGACCAGCA 60.930 66.667 24.45 0.00 43.89 4.41
119 120 4.416738 GCAGGAGGGTGGACCAGC 62.417 72.222 15.60 15.60 43.89 4.85
120 121 3.721706 GGCAGGAGGGTGGACCAG 61.722 72.222 0.00 0.00 43.89 4.00
174 176 4.512914 GAGGTGGGAGGCATGGGC 62.513 72.222 0.00 0.00 40.13 5.36
175 177 2.693864 AGAGGTGGGAGGCATGGG 60.694 66.667 0.00 0.00 0.00 4.00
178 180 2.367512 GGGAGAGGTGGGAGGCAT 60.368 66.667 0.00 0.00 0.00 4.40
179 181 4.741239 GGGGAGAGGTGGGAGGCA 62.741 72.222 0.00 0.00 0.00 4.75
201 203 4.767255 GGCGCAGGTGTGAGAGGG 62.767 72.222 10.83 0.00 0.00 4.30
204 206 4.007644 CAGGGCGCAGGTGTGAGA 62.008 66.667 10.83 0.00 0.00 3.27
223 235 3.527665 AGGTTAGGATGTGCATAGGGTTT 59.472 43.478 0.00 0.00 0.00 3.27
323 2726 5.501715 CGAATTTATGTTGATTCTCACCGG 58.498 41.667 0.00 0.00 31.63 5.28
329 2732 6.194463 CACATCGCGAATTTATGTTGATTCT 58.806 36.000 15.24 0.00 31.60 2.40
343 2746 2.459060 TTTTAGTCCCACATCGCGAA 57.541 45.000 15.24 0.00 0.00 4.70
627 3046 1.001597 CTCCGCCGTGTAATCTAGTCC 60.002 57.143 0.00 0.00 0.00 3.85
628 3047 1.599916 GCTCCGCCGTGTAATCTAGTC 60.600 57.143 0.00 0.00 0.00 2.59
709 3136 7.707035 AGTTCATCGCGATCTAAGTTCTAAAAT 59.293 33.333 20.85 0.00 0.00 1.82
711 3138 6.472486 CAGTTCATCGCGATCTAAGTTCTAAA 59.528 38.462 20.85 0.00 0.00 1.85
712 3139 5.971792 CAGTTCATCGCGATCTAAGTTCTAA 59.028 40.000 20.85 0.00 0.00 2.10
713 3140 5.505819 CCAGTTCATCGCGATCTAAGTTCTA 60.506 44.000 20.85 0.00 0.00 2.10
715 3142 3.487574 CCAGTTCATCGCGATCTAAGTTC 59.512 47.826 20.85 5.30 0.00 3.01
717 3144 2.223829 CCCAGTTCATCGCGATCTAAGT 60.224 50.000 20.85 15.97 0.00 2.24
718 3145 2.034685 TCCCAGTTCATCGCGATCTAAG 59.965 50.000 20.85 8.34 0.00 2.18
719 3146 2.028876 TCCCAGTTCATCGCGATCTAA 58.971 47.619 20.85 13.84 0.00 2.10
763 3193 1.553704 CCAACGGAGGCCTACTTTACT 59.446 52.381 14.69 0.00 0.00 2.24
764 3194 1.406477 CCCAACGGAGGCCTACTTTAC 60.406 57.143 14.69 0.00 0.00 2.01
765 3195 0.906775 CCCAACGGAGGCCTACTTTA 59.093 55.000 14.69 0.00 0.00 1.85
766 3196 0.838987 TCCCAACGGAGGCCTACTTT 60.839 55.000 14.69 7.27 32.86 2.66
767 3197 1.229400 TCCCAACGGAGGCCTACTT 60.229 57.895 14.69 0.00 32.86 2.24
796 3226 1.861971 CTTCCTTTCGGCCCGTATAC 58.138 55.000 1.63 0.00 0.00 1.47
843 3273 1.204941 CTCTTTACTGTCCCGACCTGG 59.795 57.143 0.00 0.00 37.55 4.45
844 3274 2.164624 CTCTCTTTACTGTCCCGACCTG 59.835 54.545 0.00 0.00 0.00 4.00
845 3275 2.225066 ACTCTCTTTACTGTCCCGACCT 60.225 50.000 0.00 0.00 0.00 3.85
846 3276 2.169330 ACTCTCTTTACTGTCCCGACC 58.831 52.381 0.00 0.00 0.00 4.79
847 3277 5.821995 AGTATACTCTCTTTACTGTCCCGAC 59.178 44.000 0.00 0.00 0.00 4.79
848 3278 5.821470 CAGTATACTCTCTTTACTGTCCCGA 59.179 44.000 1.26 0.00 38.54 5.14
849 3279 5.008811 CCAGTATACTCTCTTTACTGTCCCG 59.991 48.000 1.26 0.00 40.66 5.14
850 3280 5.221283 GCCAGTATACTCTCTTTACTGTCCC 60.221 48.000 1.26 0.00 40.66 4.46
851 3281 5.221283 GGCCAGTATACTCTCTTTACTGTCC 60.221 48.000 1.26 2.01 40.66 4.02
852 3282 5.221283 GGGCCAGTATACTCTCTTTACTGTC 60.221 48.000 4.39 0.00 40.66 3.51
853 3283 4.650131 GGGCCAGTATACTCTCTTTACTGT 59.350 45.833 4.39 0.00 40.66 3.55
854 3284 4.039366 GGGGCCAGTATACTCTCTTTACTG 59.961 50.000 4.39 0.00 41.49 2.74
855 3285 4.224762 GGGGCCAGTATACTCTCTTTACT 58.775 47.826 4.39 0.00 0.00 2.24
856 3286 3.005578 CGGGGCCAGTATACTCTCTTTAC 59.994 52.174 4.39 0.00 0.00 2.01
857 3287 3.117398 TCGGGGCCAGTATACTCTCTTTA 60.117 47.826 4.39 0.00 0.00 1.85
858 3288 2.040178 CGGGGCCAGTATACTCTCTTT 58.960 52.381 4.39 0.00 0.00 2.52
859 3289 1.217183 TCGGGGCCAGTATACTCTCTT 59.783 52.381 4.39 0.00 0.00 2.85
860 3290 0.851469 TCGGGGCCAGTATACTCTCT 59.149 55.000 4.39 0.00 0.00 3.10
861 3291 0.960286 GTCGGGGCCAGTATACTCTC 59.040 60.000 4.39 0.00 0.00 3.20
862 3292 0.556747 AGTCGGGGCCAGTATACTCT 59.443 55.000 4.39 0.00 0.00 3.24
863 3293 0.960286 GAGTCGGGGCCAGTATACTC 59.040 60.000 4.39 7.07 0.00 2.59
864 3294 0.822532 CGAGTCGGGGCCAGTATACT 60.823 60.000 4.39 0.00 0.00 2.12
865 3295 0.820891 TCGAGTCGGGGCCAGTATAC 60.821 60.000 13.54 0.00 0.00 1.47
866 3296 0.111832 ATCGAGTCGGGGCCAGTATA 59.888 55.000 13.54 0.00 0.00 1.47
867 3297 1.152525 ATCGAGTCGGGGCCAGTAT 60.153 57.895 13.54 0.00 0.00 2.12
868 3298 1.826921 GATCGAGTCGGGGCCAGTA 60.827 63.158 13.54 0.00 0.00 2.74
869 3299 3.148279 GATCGAGTCGGGGCCAGT 61.148 66.667 13.54 0.00 0.00 4.00
870 3300 2.835431 AGATCGAGTCGGGGCCAG 60.835 66.667 13.54 0.00 0.00 4.85
871 3301 2.833582 GAGATCGAGTCGGGGCCA 60.834 66.667 13.54 0.00 0.00 5.36
997 3512 4.314740 AGAGGTTAATGTCGAGCATCTC 57.685 45.455 0.00 0.00 36.67 2.75
1011 3526 1.933021 TCTCCTTGCGGAAGAGGTTA 58.067 50.000 19.23 0.00 39.29 2.85
1300 3859 4.769688 AGGAAACCAAAGAAAAGCAAAGG 58.230 39.130 0.00 0.00 0.00 3.11
1301 3860 6.741992 AAAGGAAACCAAAGAAAAGCAAAG 57.258 33.333 0.00 0.00 0.00 2.77
1302 3861 7.517614 AAAAAGGAAACCAAAGAAAAGCAAA 57.482 28.000 0.00 0.00 0.00 3.68
1303 3862 7.880713 ACTAAAAAGGAAACCAAAGAAAAGCAA 59.119 29.630 0.00 0.00 0.00 3.91
1304 3863 7.390823 ACTAAAAAGGAAACCAAAGAAAAGCA 58.609 30.769 0.00 0.00 0.00 3.91
1310 3869 5.529800 CGAGGACTAAAAAGGAAACCAAAGA 59.470 40.000 0.00 0.00 0.00 2.52
1321 3880 1.366854 GCGCCCCGAGGACTAAAAAG 61.367 60.000 0.00 0.00 33.47 2.27
1338 3900 2.282555 CGTCACATACAAATCCAGAGCG 59.717 50.000 0.00 0.00 0.00 5.03
1375 3938 0.457337 CGCATCCTGCTTTTTCTGCC 60.457 55.000 0.00 0.00 42.25 4.85
1451 4017 3.965539 CTTGGCCTCCTGCACCTCG 62.966 68.421 3.32 0.00 43.89 4.63
1520 4086 2.741985 TCGTTGCTGATGGGCACG 60.742 61.111 0.00 0.00 42.27 5.34
1580 4147 3.411446 CAATGTTGCCTTGGTAGTCTGA 58.589 45.455 0.00 0.00 0.00 3.27
1589 4156 5.540911 AGTCATAAAACCAATGTTGCCTTG 58.459 37.500 0.00 0.00 34.13 3.61
1609 4177 8.741841 ACTCCTAGTAGTATCTTTCACAAAGTC 58.258 37.037 0.00 0.00 39.52 3.01
1663 4232 6.350103 AGAAGTGGGTTAAATTAGAGCTAGC 58.650 40.000 6.62 6.62 0.00 3.42
1907 4614 1.198094 TTCTCTCCCCATGTCCGCAA 61.198 55.000 0.00 0.00 0.00 4.85
1984 4691 5.885912 TGAGCATTTACCCTTATCCAAAGAC 59.114 40.000 0.00 0.00 0.00 3.01
2020 4727 2.224018 TGAGAAAGCATTTGCCCAACAC 60.224 45.455 0.00 0.00 39.27 3.32
2027 4734 2.056577 GCACAGTGAGAAAGCATTTGC 58.943 47.619 4.15 0.00 39.27 3.68
2029 4736 2.295349 CCAGCACAGTGAGAAAGCATTT 59.705 45.455 4.15 0.00 43.98 2.32
2042 4749 1.888512 ACCAAACTAATGCCAGCACAG 59.111 47.619 0.00 0.00 0.00 3.66
2049 4756 8.495148 CAATTAAACTTGAACCAAACTAATGCC 58.505 33.333 0.00 0.00 0.00 4.40
2100 4810 3.945981 TCATTACGACAACTGTAGGCA 57.054 42.857 0.00 0.00 0.00 4.75
2101 4811 4.091509 CACTTCATTACGACAACTGTAGGC 59.908 45.833 0.00 0.00 0.00 3.93
2103 4813 4.923871 AGCACTTCATTACGACAACTGTAG 59.076 41.667 0.00 0.00 0.00 2.74
2104 4814 4.878439 AGCACTTCATTACGACAACTGTA 58.122 39.130 0.00 0.00 0.00 2.74
2107 4817 4.632153 AGAAGCACTTCATTACGACAACT 58.368 39.130 12.65 0.00 41.84 3.16
2122 4832 3.371898 AGCAAGCAAAACAAAAGAAGCAC 59.628 39.130 0.00 0.00 0.00 4.40
2166 4876 5.184096 TCACAGAGAGGTAGAACAGAATCAC 59.816 44.000 0.00 0.00 0.00 3.06
2390 5362 6.643388 TCAGTTGTTGATAGTGATACAGCAT 58.357 36.000 0.00 0.00 0.00 3.79
2519 5570 5.046288 GGATCTATCAATCCCATCCCATC 57.954 47.826 0.00 0.00 39.53 3.51
2621 5673 5.250543 TCCCTCTCATCCAAAATAAGTGTCA 59.749 40.000 0.00 0.00 0.00 3.58
2638 5690 5.828859 TGTTACTATTCTGCTACTCCCTCTC 59.171 44.000 0.00 0.00 0.00 3.20
3112 7972 1.303309 CCGAGAAAGCATGGCCTTAG 58.697 55.000 3.32 0.00 0.00 2.18
3148 8018 1.602377 ACAGCGGCAAACTAACAAGAC 59.398 47.619 1.45 0.00 0.00 3.01
3217 8213 4.342862 ACTGTACATGTGAAGACTTGCT 57.657 40.909 9.11 0.00 31.78 3.91
3227 8223 2.183478 TGCCCAGAACTGTACATGTG 57.817 50.000 9.11 0.00 0.00 3.21
3282 8283 3.197766 TGATCATGAGGAACCAGTGTACC 59.802 47.826 0.09 0.00 0.00 3.34
3356 8358 9.065798 TGGACATATTATTACACATGTTGGATG 57.934 33.333 0.00 0.00 31.94 3.51
3748 8761 5.684626 CGCCTGATAAAAATCTTCTGCATTC 59.315 40.000 0.00 0.00 0.00 2.67
3808 8821 2.476619 GCAATCGAGGATATCAACACCG 59.523 50.000 4.83 0.68 0.00 4.94
3809 8822 2.476619 CGCAATCGAGGATATCAACACC 59.523 50.000 4.83 0.00 38.10 4.16
3826 8847 1.154814 TACAAGTCAGCAACGCGCAA 61.155 50.000 5.73 0.00 46.13 4.85
3841 8862 6.812656 CCAATCTGCAAGCAATGTTTATACAA 59.187 34.615 0.00 0.00 37.91 2.41
3909 8959 1.649664 ACTTCTTAGCTGCTGCATCG 58.350 50.000 18.42 5.13 42.74 3.84
4108 9184 7.503230 TCTGCCAATTCAACATACATACATCAT 59.497 33.333 0.00 0.00 0.00 2.45
4265 9346 6.705863 AGGAAATCTATTCCAAGCATGAAC 57.294 37.500 9.69 0.00 41.00 3.18
4397 9486 7.287061 ACGATCAGATTATTGGATGGGTTAAA 58.713 34.615 0.00 0.00 0.00 1.52
4402 9491 7.928307 ATAAACGATCAGATTATTGGATGGG 57.072 36.000 0.00 0.00 0.00 4.00
4432 9536 1.454479 CGCATTCCCCTGCCAGAAT 60.454 57.895 0.00 0.00 39.00 2.40
4434 9538 4.113815 CCGCATTCCCCTGCCAGA 62.114 66.667 0.00 0.00 39.00 3.86
4444 9548 1.063174 CTTACAGCTCAAGCCGCATTC 59.937 52.381 0.00 0.00 43.38 2.67
4450 9554 1.744114 GCTACCCTTACAGCTCAAGCC 60.744 57.143 0.00 0.00 43.38 4.35
4471 9575 6.355747 TCTGCCTGGAAACAATTTTCATTTT 58.644 32.000 0.00 0.00 42.72 1.82
4523 9646 1.931841 CATGCCACAGACGATTCAGAG 59.068 52.381 0.00 0.00 0.00 3.35
4528 9651 0.324614 TCACCATGCCACAGACGATT 59.675 50.000 0.00 0.00 0.00 3.34
4599 9725 8.943002 ACTAATATACTTTGTGGTAAACTGTGC 58.057 33.333 0.00 0.00 0.00 4.57
4642 9770 5.187576 AGCAATTAATTAGTGCAATGGGTGT 59.812 36.000 19.58 0.91 40.83 4.16
4645 9773 9.630098 CTATAAGCAATTAATTAGTGCAATGGG 57.370 33.333 19.58 7.84 40.83 4.00
4663 9791 6.635030 TCGCTACTTCAATCTCTATAAGCA 57.365 37.500 0.00 0.00 0.00 3.91
4693 9823 7.253750 CGTCAGCTTGCAATACCAAAATAAATC 60.254 37.037 0.00 0.00 0.00 2.17
4704 9834 4.398549 TTTACACGTCAGCTTGCAATAC 57.601 40.909 0.00 0.00 0.00 1.89
4751 9881 3.407424 TTCATCTCTGTCCCACAAGTG 57.593 47.619 0.00 0.00 0.00 3.16
4785 9915 1.340399 TAGGCTGAGGGCTCATGTGG 61.340 60.000 0.00 0.00 45.63 4.17
4786 9916 0.543277 TTAGGCTGAGGGCTCATGTG 59.457 55.000 0.00 0.00 45.63 3.21
4789 9919 0.327000 ACCTTAGGCTGAGGGCTCAT 60.327 55.000 27.01 4.97 45.63 2.90
4790 9920 1.081092 ACCTTAGGCTGAGGGCTCA 59.919 57.895 27.01 0.00 45.63 4.26
4791 9921 1.268283 ACACCTTAGGCTGAGGGCTC 61.268 60.000 27.01 0.00 45.63 4.70
4793 9923 0.393132 GAACACCTTAGGCTGAGGGC 60.393 60.000 27.01 11.20 38.65 5.19
4794 9924 0.984230 TGAACACCTTAGGCTGAGGG 59.016 55.000 27.01 18.30 38.65 4.30
4795 9925 3.012518 CAATGAACACCTTAGGCTGAGG 58.987 50.000 22.73 22.73 40.24 3.86
4796 9926 2.421424 GCAATGAACACCTTAGGCTGAG 59.579 50.000 0.00 0.00 0.00 3.35
4797 9927 2.436417 GCAATGAACACCTTAGGCTGA 58.564 47.619 0.00 0.00 0.00 4.26
4798 9928 1.474077 GGCAATGAACACCTTAGGCTG 59.526 52.381 0.00 0.00 0.00 4.85
4799 9929 1.355720 AGGCAATGAACACCTTAGGCT 59.644 47.619 0.00 0.00 0.00 4.58
4829 9959 1.024271 GGCTCACAAGTCACAAAGCA 58.976 50.000 0.00 0.00 0.00 3.91
4847 9977 5.238650 CCTAACTATCGCCACCTTTAATTGG 59.761 44.000 0.00 0.00 35.81 3.16
4879 10873 2.970974 GAGCAAACAGAGCGGTGGC 61.971 63.158 0.00 0.00 40.37 5.01
4894 10888 6.964934 CGGTATTACCAATGTAAACAAAGAGC 59.035 38.462 13.22 0.00 40.21 4.09
4907 10901 5.637810 CGCATATGAAGTCGGTATTACCAAT 59.362 40.000 13.22 0.00 38.47 3.16
4917 10911 5.464965 AAAACTAACGCATATGAAGTCGG 57.535 39.130 6.97 4.99 0.00 4.79
4931 10925 7.436376 AGAGCAAAAGAGCAATGAAAAACTAAC 59.564 33.333 0.00 0.00 36.85 2.34
4941 10935 5.946298 TGATACAAGAGCAAAAGAGCAATG 58.054 37.500 0.00 0.00 36.85 2.82
4942 10936 6.208204 AGTTGATACAAGAGCAAAAGAGCAAT 59.792 34.615 0.00 0.00 34.61 3.56
4945 10939 5.391416 GGAGTTGATACAAGAGCAAAAGAGC 60.391 44.000 0.00 0.00 34.61 4.09
4956 10950 6.406370 TGACATACCAAGGAGTTGATACAAG 58.594 40.000 0.00 0.00 35.46 3.16
4957 10951 6.212589 TCTGACATACCAAGGAGTTGATACAA 59.787 38.462 0.00 0.00 35.46 2.41
4971 10965 1.114627 AGCGCTCATCTGACATACCA 58.885 50.000 2.64 0.00 0.00 3.25
4982 11688 1.131883 GCATGAAGAAACAGCGCTCAT 59.868 47.619 7.13 3.08 0.00 2.90
4989 11695 5.624344 AAGACATGAGCATGAAGAAACAG 57.376 39.130 16.70 0.00 41.20 3.16
5006 11712 3.431922 ACGTCGAGAAGTGAAAAGACA 57.568 42.857 0.00 0.00 0.00 3.41
5018 11726 2.783135 AGGGTTACAGTAACGTCGAGA 58.217 47.619 15.83 0.00 39.54 4.04
5080 11788 1.390463 CTTCTCGCGTTTGAAGGCTAC 59.610 52.381 21.81 0.00 36.84 3.58
5082 11790 2.533318 CTTCTCGCGTTTGAAGGCT 58.467 52.632 21.81 0.00 36.84 4.58
5098 11806 9.503369 AAATGTAACTAGGGTAAGTAGATCCTT 57.497 33.333 0.00 0.00 0.00 3.36
5160 11869 1.000827 TGCCGTGTGCCAAAATACAAG 60.001 47.619 0.00 0.00 40.16 3.16
5166 11875 0.247736 AAACTTGCCGTGTGCCAAAA 59.752 45.000 0.00 0.00 40.16 2.44
5170 11879 1.008538 CAGAAACTTGCCGTGTGCC 60.009 57.895 0.00 0.00 40.16 5.01
5171 11880 0.317020 GACAGAAACTTGCCGTGTGC 60.317 55.000 0.00 0.00 41.77 4.57
5195 11904 7.011828 TGTCAACTTTAGTGCTTCAGTTTAC 57.988 36.000 0.00 0.00 0.00 2.01
5209 11920 1.503294 TGACGCGCATGTCAACTTTA 58.497 45.000 14.62 0.00 45.40 1.85
5218 11929 1.578915 GCAAGTTTAATGACGCGCATG 59.421 47.619 5.73 0.00 37.28 4.06
5219 11930 1.467374 GGCAAGTTTAATGACGCGCAT 60.467 47.619 5.73 8.26 39.43 4.73
5220 11931 0.109964 GGCAAGTTTAATGACGCGCA 60.110 50.000 5.73 5.73 0.00 6.09
5221 11932 0.109964 TGGCAAGTTTAATGACGCGC 60.110 50.000 5.73 0.00 0.00 6.86
5222 11933 2.542766 ATGGCAAGTTTAATGACGCG 57.457 45.000 3.53 3.53 0.00 6.01
5223 11934 6.698359 TTTTTATGGCAAGTTTAATGACGC 57.302 33.333 0.00 0.00 0.00 5.19
5247 11958 3.728845 AGCACATTACAACTCAGAACGT 58.271 40.909 0.00 0.00 0.00 3.99
5248 11959 3.123621 GGAGCACATTACAACTCAGAACG 59.876 47.826 0.00 0.00 0.00 3.95
5249 11960 4.319177 AGGAGCACATTACAACTCAGAAC 58.681 43.478 0.00 0.00 0.00 3.01
5252 11963 5.911752 AGATAGGAGCACATTACAACTCAG 58.088 41.667 0.00 0.00 0.00 3.35
5253 11964 5.939764 AGATAGGAGCACATTACAACTCA 57.060 39.130 0.00 0.00 0.00 3.41
5254 11965 6.036517 CACAAGATAGGAGCACATTACAACTC 59.963 42.308 0.00 0.00 0.00 3.01
5255 11966 5.877012 CACAAGATAGGAGCACATTACAACT 59.123 40.000 0.00 0.00 0.00 3.16
5256 11967 5.643777 ACACAAGATAGGAGCACATTACAAC 59.356 40.000 0.00 0.00 0.00 3.32
5257 11968 5.643348 CACACAAGATAGGAGCACATTACAA 59.357 40.000 0.00 0.00 0.00 2.41
5258 11969 5.178061 CACACAAGATAGGAGCACATTACA 58.822 41.667 0.00 0.00 0.00 2.41
5259 11970 5.178797 ACACACAAGATAGGAGCACATTAC 58.821 41.667 0.00 0.00 0.00 1.89
5260 11971 5.046663 TGACACACAAGATAGGAGCACATTA 60.047 40.000 0.00 0.00 0.00 1.90
5261 11972 4.256920 GACACACAAGATAGGAGCACATT 58.743 43.478 0.00 0.00 0.00 2.71
5262 11973 3.261643 TGACACACAAGATAGGAGCACAT 59.738 43.478 0.00 0.00 0.00 3.21
5263 11974 2.632512 TGACACACAAGATAGGAGCACA 59.367 45.455 0.00 0.00 0.00 4.57
5270 11981 6.045318 CCCTGATAAGTGACACACAAGATAG 58.955 44.000 8.59 0.00 36.74 2.08
5282 11993 5.970640 AGGAAATTAGGACCCTGATAAGTGA 59.029 40.000 0.00 0.00 0.00 3.41
5289 12000 5.321927 GTTTGAAGGAAATTAGGACCCTGA 58.678 41.667 0.00 0.00 0.00 3.86
5290 12001 4.462834 GGTTTGAAGGAAATTAGGACCCTG 59.537 45.833 0.00 0.00 0.00 4.45
5294 12005 5.952526 TTCGGTTTGAAGGAAATTAGGAC 57.047 39.130 0.00 0.00 31.44 3.85
5300 12011 3.193479 GGCTCATTCGGTTTGAAGGAAAT 59.807 43.478 0.00 0.00 45.83 2.17
5304 12015 0.811281 GGGCTCATTCGGTTTGAAGG 59.189 55.000 0.00 0.00 40.65 3.46
5305 12016 0.811281 GGGGCTCATTCGGTTTGAAG 59.189 55.000 0.00 0.00 40.65 3.02
5306 12017 0.404040 AGGGGCTCATTCGGTTTGAA 59.596 50.000 0.00 0.00 41.81 2.69
5307 12018 1.209504 CTAGGGGCTCATTCGGTTTGA 59.790 52.381 0.00 0.00 0.00 2.69
5308 12019 1.209504 TCTAGGGGCTCATTCGGTTTG 59.790 52.381 0.00 0.00 0.00 2.93
5309 12020 1.580059 TCTAGGGGCTCATTCGGTTT 58.420 50.000 0.00 0.00 0.00 3.27
5310 12021 1.580059 TTCTAGGGGCTCATTCGGTT 58.420 50.000 0.00 0.00 0.00 4.44
5311 12022 1.807814 ATTCTAGGGGCTCATTCGGT 58.192 50.000 0.00 0.00 0.00 4.69
5312 12023 3.665190 GTTATTCTAGGGGCTCATTCGG 58.335 50.000 0.00 0.00 0.00 4.30
5313 12024 3.318017 CGTTATTCTAGGGGCTCATTCG 58.682 50.000 0.00 0.00 0.00 3.34
5314 12025 3.071167 ACCGTTATTCTAGGGGCTCATTC 59.929 47.826 0.00 0.00 0.00 2.67
5315 12026 3.046374 ACCGTTATTCTAGGGGCTCATT 58.954 45.455 0.00 0.00 0.00 2.57
5316 12027 2.368875 CACCGTTATTCTAGGGGCTCAT 59.631 50.000 0.00 0.00 0.00 2.90
5317 12028 1.760613 CACCGTTATTCTAGGGGCTCA 59.239 52.381 0.00 0.00 0.00 4.26
5318 12029 2.528041 CACCGTTATTCTAGGGGCTC 57.472 55.000 0.00 0.00 0.00 4.70
5321 12032 1.810412 GCTGCACCGTTATTCTAGGGG 60.810 57.143 0.00 0.00 0.00 4.79
5322 12033 1.583054 GCTGCACCGTTATTCTAGGG 58.417 55.000 0.00 0.00 0.00 3.53
5326 12037 0.037697 TCACGCTGCACCGTTATTCT 60.038 50.000 3.86 0.00 39.83 2.40
5334 12045 1.801913 CTAGACGTCACGCTGCACC 60.802 63.158 19.50 0.00 0.00 5.01
5352 12063 1.218316 CCACCACGCCCTTAGAGTC 59.782 63.158 0.00 0.00 0.00 3.36
5353 12064 2.955881 GCCACCACGCCCTTAGAGT 61.956 63.158 0.00 0.00 0.00 3.24
5354 12065 2.125106 GCCACCACGCCCTTAGAG 60.125 66.667 0.00 0.00 0.00 2.43
5355 12066 2.925706 TGCCACCACGCCCTTAGA 60.926 61.111 0.00 0.00 0.00 2.10
5356 12067 2.746277 GTGCCACCACGCCCTTAG 60.746 66.667 0.00 0.00 31.34 2.18
5364 12077 2.049248 CCAATTGCGTGCCACCAC 60.049 61.111 0.00 0.00 38.62 4.16
5382 12095 2.494059 AGTGTGTTTCCGTTGGAGATG 58.506 47.619 0.00 0.00 31.21 2.90
5407 12120 4.500127 TCGAACTGACTCAACTGAACAAA 58.500 39.130 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.