Multiple sequence alignment - TraesCS6D01G312700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G312700 chr6D 100.000 2585 0 0 1 2585 421840569 421843153 0.000000e+00 4774
1 TraesCS6D01G312700 chr6D 94.907 1296 48 7 398 1688 449138063 449136781 0.000000e+00 2012
2 TraesCS6D01G312700 chr6D 96.548 898 30 1 1688 2585 53476269 53475373 0.000000e+00 1485
3 TraesCS6D01G312700 chr1D 95.279 1292 49 10 398 1688 430108487 430109767 0.000000e+00 2037
4 TraesCS6D01G312700 chr1D 96.656 897 29 1 1689 2585 122621882 122620987 0.000000e+00 1489
5 TraesCS6D01G312700 chr4D 95.120 1291 52 5 399 1688 502108821 502107541 0.000000e+00 2025
6 TraesCS6D01G312700 chr4D 94.888 1291 55 5 401 1688 481887026 481888308 0.000000e+00 2008
7 TraesCS6D01G312700 chr5D 95.116 1290 50 5 400 1688 98665778 98664501 0.000000e+00 2021
8 TraesCS6D01G312700 chr5D 97.324 897 22 2 1689 2585 407296679 407295785 0.000000e+00 1522
9 TraesCS6D01G312700 chr5D 96.437 898 31 1 1688 2585 228191153 228190257 0.000000e+00 1480
10 TraesCS6D01G312700 chr3D 94.973 1293 50 8 398 1688 553937354 553936075 0.000000e+00 2013
11 TraesCS6D01G312700 chr3D 94.814 1292 57 6 398 1688 576579536 576578254 0.000000e+00 2006
12 TraesCS6D01G312700 chr3D 96.321 897 31 2 1689 2585 333465184 333464290 0.000000e+00 1472
13 TraesCS6D01G312700 chr3D 96.214 898 32 2 1689 2585 581238995 581239891 0.000000e+00 1469
14 TraesCS6D01G312700 chr2D 94.651 1290 55 6 400 1688 236134839 236136115 0.000000e+00 1988
15 TraesCS6D01G312700 chr2D 97.213 897 24 1 1689 2585 2464491 2465386 0.000000e+00 1517
16 TraesCS6D01G312700 chr2D 96.235 903 34 0 1683 2585 444654746 444655648 0.000000e+00 1480
17 TraesCS6D01G312700 chr2A 94.509 1293 55 11 398 1688 704738835 704737557 0.000000e+00 1980
18 TraesCS6D01G312700 chr7D 96.098 897 32 3 1689 2585 152951963 152952856 0.000000e+00 1459
19 TraesCS6D01G312700 chr6A 88.564 411 33 7 1 400 564658396 564658803 1.080000e-133 486


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G312700 chr6D 421840569 421843153 2584 False 4774 4774 100.000 1 2585 1 chr6D.!!$F1 2584
1 TraesCS6D01G312700 chr6D 449136781 449138063 1282 True 2012 2012 94.907 398 1688 1 chr6D.!!$R2 1290
2 TraesCS6D01G312700 chr6D 53475373 53476269 896 True 1485 1485 96.548 1688 2585 1 chr6D.!!$R1 897
3 TraesCS6D01G312700 chr1D 430108487 430109767 1280 False 2037 2037 95.279 398 1688 1 chr1D.!!$F1 1290
4 TraesCS6D01G312700 chr1D 122620987 122621882 895 True 1489 1489 96.656 1689 2585 1 chr1D.!!$R1 896
5 TraesCS6D01G312700 chr4D 502107541 502108821 1280 True 2025 2025 95.120 399 1688 1 chr4D.!!$R1 1289
6 TraesCS6D01G312700 chr4D 481887026 481888308 1282 False 2008 2008 94.888 401 1688 1 chr4D.!!$F1 1287
7 TraesCS6D01G312700 chr5D 98664501 98665778 1277 True 2021 2021 95.116 400 1688 1 chr5D.!!$R1 1288
8 TraesCS6D01G312700 chr5D 407295785 407296679 894 True 1522 1522 97.324 1689 2585 1 chr5D.!!$R3 896
9 TraesCS6D01G312700 chr5D 228190257 228191153 896 True 1480 1480 96.437 1688 2585 1 chr5D.!!$R2 897
10 TraesCS6D01G312700 chr3D 553936075 553937354 1279 True 2013 2013 94.973 398 1688 1 chr3D.!!$R2 1290
11 TraesCS6D01G312700 chr3D 576578254 576579536 1282 True 2006 2006 94.814 398 1688 1 chr3D.!!$R3 1290
12 TraesCS6D01G312700 chr3D 333464290 333465184 894 True 1472 1472 96.321 1689 2585 1 chr3D.!!$R1 896
13 TraesCS6D01G312700 chr3D 581238995 581239891 896 False 1469 1469 96.214 1689 2585 1 chr3D.!!$F1 896
14 TraesCS6D01G312700 chr2D 236134839 236136115 1276 False 1988 1988 94.651 400 1688 1 chr2D.!!$F2 1288
15 TraesCS6D01G312700 chr2D 2464491 2465386 895 False 1517 1517 97.213 1689 2585 1 chr2D.!!$F1 896
16 TraesCS6D01G312700 chr2D 444654746 444655648 902 False 1480 1480 96.235 1683 2585 1 chr2D.!!$F3 902
17 TraesCS6D01G312700 chr2A 704737557 704738835 1278 True 1980 1980 94.509 398 1688 1 chr2A.!!$R1 1290
18 TraesCS6D01G312700 chr7D 152951963 152952856 893 False 1459 1459 96.098 1689 2585 1 chr7D.!!$F1 896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 325 0.026544 GAAGTCGACTCGAGGCTACG 59.973 60.0 20.33 15.57 36.23 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1979 2010 0.732571 CATTGGTCGCGGCTGTTAAT 59.267 50.0 11.94 3.95 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.957060 GGTACCCAAAAGGGTGCTC 58.043 57.895 18.97 7.81 42.82 4.26
26 27 0.111639 GGTACCCAAAAGGGTGCTCA 59.888 55.000 18.97 0.00 42.82 4.26
27 28 1.479757 GGTACCCAAAAGGGTGCTCAA 60.480 52.381 18.97 0.00 42.82 3.02
28 29 2.312390 GTACCCAAAAGGGTGCTCAAA 58.688 47.619 16.25 0.00 42.89 2.69
29 30 1.872773 ACCCAAAAGGGTGCTCAAAA 58.127 45.000 5.19 0.00 41.24 2.44
30 31 2.192263 ACCCAAAAGGGTGCTCAAAAA 58.808 42.857 5.19 0.00 41.24 1.94
46 47 2.896745 AAAAACTTGGCTCCTGCTTG 57.103 45.000 0.00 0.00 39.59 4.01
47 48 1.780503 AAAACTTGGCTCCTGCTTGT 58.219 45.000 0.00 0.00 39.59 3.16
48 49 1.322442 AAACTTGGCTCCTGCTTGTC 58.678 50.000 0.00 0.00 39.59 3.18
49 50 0.886490 AACTTGGCTCCTGCTTGTCG 60.886 55.000 0.00 0.00 39.59 4.35
50 51 2.669569 TTGGCTCCTGCTTGTCGC 60.670 61.111 0.00 0.00 39.59 5.19
51 52 4.704833 TGGCTCCTGCTTGTCGCC 62.705 66.667 0.00 0.00 41.06 5.54
52 53 4.704833 GGCTCCTGCTTGTCGCCA 62.705 66.667 0.00 0.00 40.41 5.69
53 54 3.426568 GCTCCTGCTTGTCGCCAC 61.427 66.667 0.00 0.00 38.05 5.01
54 55 2.031012 CTCCTGCTTGTCGCCACA 59.969 61.111 0.00 0.00 38.05 4.17
55 56 2.031012 TCCTGCTTGTCGCCACAG 59.969 61.111 0.00 0.00 38.05 3.66
56 57 3.730761 CCTGCTTGTCGCCACAGC 61.731 66.667 0.36 0.36 38.05 4.40
57 58 2.667536 CTGCTTGTCGCCACAGCT 60.668 61.111 7.23 0.00 38.05 4.24
58 59 2.666190 TGCTTGTCGCCACAGCTC 60.666 61.111 7.23 0.00 38.05 4.09
59 60 2.666190 GCTTGTCGCCACAGCTCA 60.666 61.111 0.00 0.00 36.60 4.26
60 61 2.253758 GCTTGTCGCCACAGCTCAA 61.254 57.895 0.00 0.00 36.60 3.02
61 62 1.580845 GCTTGTCGCCACAGCTCAAT 61.581 55.000 0.00 0.00 36.60 2.57
62 63 0.167470 CTTGTCGCCACAGCTCAATG 59.833 55.000 0.00 0.00 36.60 2.82
63 64 1.236616 TTGTCGCCACAGCTCAATGG 61.237 55.000 4.12 4.12 39.16 3.16
64 65 1.375908 GTCGCCACAGCTCAATGGA 60.376 57.895 11.60 0.00 38.34 3.41
65 66 1.078918 TCGCCACAGCTCAATGGAG 60.079 57.895 11.60 8.60 44.33 3.86
66 67 1.376424 CGCCACAGCTCAATGGAGT 60.376 57.895 11.60 0.00 43.37 3.85
67 68 0.957395 CGCCACAGCTCAATGGAGTT 60.957 55.000 11.60 0.00 43.37 3.01
68 69 1.251251 GCCACAGCTCAATGGAGTTT 58.749 50.000 11.60 0.00 43.37 2.66
69 70 1.200948 GCCACAGCTCAATGGAGTTTC 59.799 52.381 11.60 0.00 43.37 2.78
70 71 2.787994 CCACAGCTCAATGGAGTTTCT 58.212 47.619 0.00 0.00 43.37 2.52
71 72 2.486982 CCACAGCTCAATGGAGTTTCTG 59.513 50.000 0.00 0.50 43.37 3.02
72 73 3.405831 CACAGCTCAATGGAGTTTCTGA 58.594 45.455 9.48 0.00 43.37 3.27
73 74 4.008330 CACAGCTCAATGGAGTTTCTGAT 58.992 43.478 9.48 0.00 43.37 2.90
74 75 4.008330 ACAGCTCAATGGAGTTTCTGATG 58.992 43.478 9.48 0.00 43.37 3.07
75 76 3.377485 CAGCTCAATGGAGTTTCTGATGG 59.623 47.826 0.00 0.00 43.37 3.51
76 77 2.098770 GCTCAATGGAGTTTCTGATGGC 59.901 50.000 0.00 0.00 43.37 4.40
77 78 2.686915 CTCAATGGAGTTTCTGATGGCC 59.313 50.000 0.00 0.00 36.36 5.36
78 79 1.753073 CAATGGAGTTTCTGATGGCCC 59.247 52.381 0.00 0.00 0.00 5.80
79 80 0.259938 ATGGAGTTTCTGATGGCCCC 59.740 55.000 0.00 0.00 0.00 5.80
80 81 0.846427 TGGAGTTTCTGATGGCCCCT 60.846 55.000 0.00 0.00 0.00 4.79
81 82 0.394899 GGAGTTTCTGATGGCCCCTG 60.395 60.000 0.00 0.00 0.00 4.45
82 83 0.329596 GAGTTTCTGATGGCCCCTGT 59.670 55.000 0.00 0.00 0.00 4.00
83 84 0.779997 AGTTTCTGATGGCCCCTGTT 59.220 50.000 0.00 0.00 0.00 3.16
84 85 1.992557 AGTTTCTGATGGCCCCTGTTA 59.007 47.619 0.00 0.00 0.00 2.41
85 86 2.582636 AGTTTCTGATGGCCCCTGTTAT 59.417 45.455 0.00 0.00 0.00 1.89
86 87 3.785887 AGTTTCTGATGGCCCCTGTTATA 59.214 43.478 0.00 0.00 0.00 0.98
87 88 4.416848 AGTTTCTGATGGCCCCTGTTATAT 59.583 41.667 0.00 0.00 0.00 0.86
88 89 5.103515 AGTTTCTGATGGCCCCTGTTATATT 60.104 40.000 0.00 0.00 0.00 1.28
89 90 4.371624 TCTGATGGCCCCTGTTATATTG 57.628 45.455 0.00 0.00 0.00 1.90
90 91 3.980022 TCTGATGGCCCCTGTTATATTGA 59.020 43.478 0.00 0.00 0.00 2.57
91 92 4.042062 TCTGATGGCCCCTGTTATATTGAG 59.958 45.833 0.00 0.00 0.00 3.02
92 93 2.656947 TGGCCCCTGTTATATTGAGC 57.343 50.000 0.00 0.00 0.00 4.26
93 94 1.144913 TGGCCCCTGTTATATTGAGCC 59.855 52.381 0.00 0.00 39.64 4.70
94 95 1.144913 GGCCCCTGTTATATTGAGCCA 59.855 52.381 0.00 0.00 39.01 4.75
95 96 2.508526 GCCCCTGTTATATTGAGCCAG 58.491 52.381 0.00 0.00 0.00 4.85
96 97 2.508526 CCCCTGTTATATTGAGCCAGC 58.491 52.381 0.00 0.00 0.00 4.85
97 98 2.107204 CCCCTGTTATATTGAGCCAGCT 59.893 50.000 0.00 0.00 0.00 4.24
98 99 3.435601 CCCCTGTTATATTGAGCCAGCTT 60.436 47.826 0.00 0.00 0.00 3.74
99 100 3.567164 CCCTGTTATATTGAGCCAGCTTG 59.433 47.826 0.00 0.00 0.00 4.01
100 101 3.004106 CCTGTTATATTGAGCCAGCTTGC 59.996 47.826 0.46 0.46 0.00 4.01
101 102 3.619419 TGTTATATTGAGCCAGCTTGCA 58.381 40.909 12.92 0.00 0.00 4.08
102 103 3.628942 TGTTATATTGAGCCAGCTTGCAG 59.371 43.478 12.92 0.00 0.00 4.41
103 104 1.030457 ATATTGAGCCAGCTTGCAGC 58.970 50.000 12.92 4.21 42.84 5.25
104 105 1.033746 TATTGAGCCAGCTTGCAGCC 61.034 55.000 12.92 1.49 43.77 4.85
105 106 2.783122 ATTGAGCCAGCTTGCAGCCT 62.783 55.000 12.92 0.00 43.77 4.58
106 107 2.675772 GAGCCAGCTTGCAGCCTT 60.676 61.111 12.92 0.00 43.77 4.35
107 108 2.989824 AGCCAGCTTGCAGCCTTG 60.990 61.111 12.92 0.00 43.77 3.61
108 109 4.065281 GCCAGCTTGCAGCCTTGG 62.065 66.667 4.63 10.23 43.77 3.61
109 110 4.065281 CCAGCTTGCAGCCTTGGC 62.065 66.667 2.97 2.97 43.77 4.52
110 111 2.989824 CAGCTTGCAGCCTTGGCT 60.990 61.111 8.56 8.56 43.77 4.75
111 112 2.675772 AGCTTGCAGCCTTGGCTC 60.676 61.111 11.72 7.55 43.77 4.70
112 113 2.675772 GCTTGCAGCCTTGGCTCT 60.676 61.111 11.72 0.00 34.48 4.09
113 114 2.991076 GCTTGCAGCCTTGGCTCTG 61.991 63.158 11.72 3.85 34.48 3.35
114 115 1.303074 CTTGCAGCCTTGGCTCTGA 60.303 57.895 11.72 0.00 32.26 3.27
115 116 0.892358 CTTGCAGCCTTGGCTCTGAA 60.892 55.000 11.72 4.07 32.26 3.02
116 117 0.892358 TTGCAGCCTTGGCTCTGAAG 60.892 55.000 11.72 1.36 32.26 3.02
117 118 2.045131 GCAGCCTTGGCTCTGAAGG 61.045 63.158 11.72 0.00 42.68 3.46
118 119 1.377994 CAGCCTTGGCTCTGAAGGT 59.622 57.895 11.72 0.00 41.93 3.50
119 120 0.959372 CAGCCTTGGCTCTGAAGGTG 60.959 60.000 11.72 0.00 41.93 4.00
120 121 2.338785 GCCTTGGCTCTGAAGGTGC 61.339 63.158 4.11 0.00 41.93 5.01
121 122 1.073722 CCTTGGCTCTGAAGGTGCA 59.926 57.895 0.00 0.00 36.05 4.57
122 123 0.959372 CCTTGGCTCTGAAGGTGCAG 60.959 60.000 0.00 0.00 36.05 4.41
123 124 1.584380 CTTGGCTCTGAAGGTGCAGC 61.584 60.000 8.11 8.11 36.29 5.25
124 125 2.033141 GGCTCTGAAGGTGCAGCA 59.967 61.111 19.63 0.00 36.29 4.41
125 126 1.601759 GGCTCTGAAGGTGCAGCAA 60.602 57.895 19.63 2.09 36.29 3.91
126 127 1.578423 GCTCTGAAGGTGCAGCAAC 59.422 57.895 19.63 0.57 35.86 4.17
127 128 1.860484 GCTCTGAAGGTGCAGCAACC 61.860 60.000 19.63 6.36 40.85 3.77
138 139 1.364901 CAGCAACCTGCCAGTTTGG 59.635 57.895 4.07 0.00 46.52 3.28
153 154 3.820590 TGGCAACACCGTGTCTTG 58.179 55.556 4.23 1.67 46.17 3.02
154 155 1.821759 TGGCAACACCGTGTCTTGG 60.822 57.895 4.23 0.00 46.17 3.61
155 156 1.822186 GGCAACACCGTGTCTTGGT 60.822 57.895 4.23 0.00 41.47 3.67
156 157 1.647084 GCAACACCGTGTCTTGGTC 59.353 57.895 4.23 0.00 37.72 4.02
157 158 0.814010 GCAACACCGTGTCTTGGTCT 60.814 55.000 4.23 0.00 37.72 3.85
158 159 1.663695 CAACACCGTGTCTTGGTCTT 58.336 50.000 4.23 0.00 37.72 3.01
159 160 1.330521 CAACACCGTGTCTTGGTCTTG 59.669 52.381 4.23 0.00 37.72 3.02
160 161 0.814010 ACACCGTGTCTTGGTCTTGC 60.814 55.000 0.00 0.00 37.72 4.01
161 162 0.813610 CACCGTGTCTTGGTCTTGCA 60.814 55.000 0.00 0.00 37.72 4.08
162 163 0.814010 ACCGTGTCTTGGTCTTGCAC 60.814 55.000 0.00 0.00 33.35 4.57
163 164 0.813610 CCGTGTCTTGGTCTTGCACA 60.814 55.000 0.00 0.00 0.00 4.57
164 165 0.583438 CGTGTCTTGGTCTTGCACAG 59.417 55.000 0.00 0.00 0.00 3.66
165 166 1.668419 GTGTCTTGGTCTTGCACAGT 58.332 50.000 0.00 0.00 0.00 3.55
166 167 1.331756 GTGTCTTGGTCTTGCACAGTG 59.668 52.381 0.00 0.00 0.00 3.66
167 168 1.065491 TGTCTTGGTCTTGCACAGTGT 60.065 47.619 1.61 0.00 0.00 3.55
168 169 1.599542 GTCTTGGTCTTGCACAGTGTC 59.400 52.381 1.61 0.00 0.00 3.67
169 170 1.209261 TCTTGGTCTTGCACAGTGTCA 59.791 47.619 1.61 0.00 0.00 3.58
170 171 2.158769 TCTTGGTCTTGCACAGTGTCAT 60.159 45.455 1.61 0.00 0.00 3.06
171 172 1.596603 TGGTCTTGCACAGTGTCATG 58.403 50.000 1.61 3.87 0.00 3.07
172 173 1.140652 TGGTCTTGCACAGTGTCATGA 59.859 47.619 1.61 6.04 0.00 3.07
173 174 1.532868 GGTCTTGCACAGTGTCATGAC 59.467 52.381 19.27 19.27 36.93 3.06
174 175 2.212652 GTCTTGCACAGTGTCATGACA 58.787 47.619 24.56 24.56 37.34 3.58
175 176 2.222678 GTCTTGCACAGTGTCATGACAG 59.777 50.000 28.54 19.64 42.74 3.51
176 177 2.158914 TCTTGCACAGTGTCATGACAGT 60.159 45.455 28.54 27.76 45.21 3.55
177 178 3.069443 TCTTGCACAGTGTCATGACAGTA 59.931 43.478 30.79 16.17 42.66 2.74
178 179 3.030668 TGCACAGTGTCATGACAGTAG 57.969 47.619 30.79 25.82 42.66 2.57
179 180 2.627699 TGCACAGTGTCATGACAGTAGA 59.372 45.455 30.79 14.99 42.66 2.59
180 181 3.259123 TGCACAGTGTCATGACAGTAGAT 59.741 43.478 30.79 18.70 42.66 1.98
181 182 4.462483 TGCACAGTGTCATGACAGTAGATA 59.538 41.667 30.79 17.35 42.66 1.98
182 183 4.800993 GCACAGTGTCATGACAGTAGATAC 59.199 45.833 30.79 17.01 42.66 2.24
183 184 5.030936 CACAGTGTCATGACAGTAGATACG 58.969 45.833 30.79 20.96 42.66 3.06
184 185 4.038361 CAGTGTCATGACAGTAGATACGC 58.962 47.826 30.79 15.69 42.66 4.42
185 186 3.036633 GTGTCATGACAGTAGATACGCG 58.963 50.000 28.54 3.53 42.74 6.01
186 187 2.044860 GTCATGACAGTAGATACGCGC 58.955 52.381 21.07 0.00 0.00 6.86
187 188 1.045477 CATGACAGTAGATACGCGCG 58.955 55.000 30.96 30.96 0.00 6.86
188 189 0.661552 ATGACAGTAGATACGCGCGT 59.338 50.000 39.05 39.05 0.00 6.01
189 190 0.247934 TGACAGTAGATACGCGCGTG 60.248 55.000 42.78 27.03 0.00 5.34
190 191 0.928908 GACAGTAGATACGCGCGTGG 60.929 60.000 42.78 23.93 0.00 4.94
191 192 1.063649 CAGTAGATACGCGCGTGGT 59.936 57.895 42.78 31.04 0.00 4.16
192 193 0.928908 CAGTAGATACGCGCGTGGTC 60.929 60.000 42.78 35.63 0.00 4.02
193 194 2.002401 GTAGATACGCGCGTGGTCG 61.002 63.158 42.78 13.59 40.37 4.79
194 195 3.172099 TAGATACGCGCGTGGTCGG 62.172 63.158 42.78 10.49 37.56 4.79
210 211 3.977244 GGCCGTGTGCAAGGGTTG 61.977 66.667 6.31 0.00 43.89 3.77
211 212 3.216292 GCCGTGTGCAAGGGTTGT 61.216 61.111 6.31 0.00 40.77 3.32
212 213 2.721231 CCGTGTGCAAGGGTTGTG 59.279 61.111 0.00 0.00 0.00 3.33
213 214 2.026014 CGTGTGCAAGGGTTGTGC 59.974 61.111 0.00 0.00 42.55 4.57
214 215 2.417097 GTGTGCAAGGGTTGTGCC 59.583 61.111 0.00 0.00 41.49 5.01
215 216 2.127232 GTGTGCAAGGGTTGTGCCT 61.127 57.895 0.00 0.00 41.49 4.75
216 217 1.381056 TGTGCAAGGGTTGTGCCTT 60.381 52.632 0.00 0.00 41.49 4.35
217 218 1.363807 GTGCAAGGGTTGTGCCTTC 59.636 57.895 0.00 0.00 41.49 3.46
218 219 1.832167 TGCAAGGGTTGTGCCTTCC 60.832 57.895 0.00 0.00 41.49 3.46
219 220 1.531602 GCAAGGGTTGTGCCTTCCT 60.532 57.895 0.00 0.00 35.91 3.36
220 221 0.251165 GCAAGGGTTGTGCCTTCCTA 60.251 55.000 0.00 0.00 35.91 2.94
221 222 1.616994 GCAAGGGTTGTGCCTTCCTAT 60.617 52.381 0.00 0.00 35.91 2.57
222 223 2.369394 CAAGGGTTGTGCCTTCCTATC 58.631 52.381 0.00 0.00 37.43 2.08
223 224 0.919710 AGGGTTGTGCCTTCCTATCC 59.080 55.000 0.00 0.00 37.43 2.59
224 225 0.106669 GGGTTGTGCCTTCCTATCCC 60.107 60.000 0.00 0.00 37.43 3.85
225 226 0.106669 GGTTGTGCCTTCCTATCCCC 60.107 60.000 0.00 0.00 0.00 4.81
226 227 0.919710 GTTGTGCCTTCCTATCCCCT 59.080 55.000 0.00 0.00 0.00 4.79
227 228 0.918983 TTGTGCCTTCCTATCCCCTG 59.081 55.000 0.00 0.00 0.00 4.45
228 229 0.044092 TGTGCCTTCCTATCCCCTGA 59.956 55.000 0.00 0.00 0.00 3.86
229 230 0.470341 GTGCCTTCCTATCCCCTGAC 59.530 60.000 0.00 0.00 0.00 3.51
230 231 0.694444 TGCCTTCCTATCCCCTGACC 60.694 60.000 0.00 0.00 0.00 4.02
231 232 1.759459 GCCTTCCTATCCCCTGACCG 61.759 65.000 0.00 0.00 0.00 4.79
232 233 0.105658 CCTTCCTATCCCCTGACCGA 60.106 60.000 0.00 0.00 0.00 4.69
233 234 1.691482 CCTTCCTATCCCCTGACCGAA 60.691 57.143 0.00 0.00 0.00 4.30
234 235 2.116238 CTTCCTATCCCCTGACCGAAA 58.884 52.381 0.00 0.00 0.00 3.46
235 236 1.492764 TCCTATCCCCTGACCGAAAC 58.507 55.000 0.00 0.00 0.00 2.78
236 237 0.468648 CCTATCCCCTGACCGAAACC 59.531 60.000 0.00 0.00 0.00 3.27
237 238 1.200519 CTATCCCCTGACCGAAACCA 58.799 55.000 0.00 0.00 0.00 3.67
238 239 1.139058 CTATCCCCTGACCGAAACCAG 59.861 57.143 0.00 0.00 0.00 4.00
239 240 0.546747 ATCCCCTGACCGAAACCAGA 60.547 55.000 0.00 0.00 32.37 3.86
240 241 0.765135 TCCCCTGACCGAAACCAGAA 60.765 55.000 0.00 0.00 32.37 3.02
241 242 0.109723 CCCCTGACCGAAACCAGAAA 59.890 55.000 0.00 0.00 32.37 2.52
242 243 1.235724 CCCTGACCGAAACCAGAAAC 58.764 55.000 0.00 0.00 32.37 2.78
243 244 0.865769 CCTGACCGAAACCAGAAACG 59.134 55.000 0.00 0.00 32.37 3.60
244 245 1.539496 CCTGACCGAAACCAGAAACGA 60.539 52.381 0.00 0.00 32.37 3.85
245 246 2.413837 CTGACCGAAACCAGAAACGAT 58.586 47.619 0.00 0.00 32.37 3.73
246 247 2.139917 TGACCGAAACCAGAAACGATG 58.860 47.619 0.00 0.00 0.00 3.84
247 248 2.140717 GACCGAAACCAGAAACGATGT 58.859 47.619 0.00 0.00 0.00 3.06
248 249 3.243805 TGACCGAAACCAGAAACGATGTA 60.244 43.478 0.00 0.00 0.00 2.29
249 250 3.323243 ACCGAAACCAGAAACGATGTAG 58.677 45.455 0.00 0.00 0.00 2.74
250 251 3.243975 ACCGAAACCAGAAACGATGTAGT 60.244 43.478 0.00 0.00 0.00 2.73
251 252 3.744426 CCGAAACCAGAAACGATGTAGTT 59.256 43.478 0.00 0.00 35.59 2.24
252 253 4.143179 CCGAAACCAGAAACGATGTAGTTC 60.143 45.833 0.00 0.00 32.43 3.01
253 254 4.432503 CGAAACCAGAAACGATGTAGTTCG 60.433 45.833 0.00 0.00 44.56 3.95
254 255 3.928727 ACCAGAAACGATGTAGTTCGA 57.071 42.857 0.31 0.00 41.62 3.71
255 256 3.572584 ACCAGAAACGATGTAGTTCGAC 58.427 45.455 0.31 0.00 41.62 4.20
256 257 3.255149 ACCAGAAACGATGTAGTTCGACT 59.745 43.478 0.31 0.00 41.62 4.18
257 258 3.608506 CCAGAAACGATGTAGTTCGACTG 59.391 47.826 0.31 7.03 41.62 3.51
258 259 4.473199 CAGAAACGATGTAGTTCGACTGA 58.527 43.478 0.31 0.00 41.62 3.41
259 260 4.915667 CAGAAACGATGTAGTTCGACTGAA 59.084 41.667 0.31 0.00 41.62 3.02
260 261 5.401376 CAGAAACGATGTAGTTCGACTGAAA 59.599 40.000 0.31 0.00 41.62 2.69
261 262 5.629849 AGAAACGATGTAGTTCGACTGAAAG 59.370 40.000 0.31 0.00 41.62 2.62
262 263 4.761235 ACGATGTAGTTCGACTGAAAGA 57.239 40.909 0.31 0.00 41.62 2.52
263 264 4.724303 ACGATGTAGTTCGACTGAAAGAG 58.276 43.478 0.31 0.00 41.62 2.85
264 265 3.544285 CGATGTAGTTCGACTGAAAGAGC 59.456 47.826 0.00 0.00 41.62 4.09
265 266 4.486090 GATGTAGTTCGACTGAAAGAGCA 58.514 43.478 0.00 0.00 37.43 4.26
266 267 4.521130 TGTAGTTCGACTGAAAGAGCAT 57.479 40.909 0.00 0.00 37.43 3.79
267 268 4.237724 TGTAGTTCGACTGAAAGAGCATG 58.762 43.478 0.00 0.00 37.43 4.06
268 269 2.072298 AGTTCGACTGAAAGAGCATGC 58.928 47.619 10.51 10.51 37.43 4.06
269 270 1.070821 TTCGACTGAAAGAGCATGCG 58.929 50.000 13.01 0.00 37.43 4.73
270 271 1.059994 CGACTGAAAGAGCATGCGC 59.940 57.895 14.17 14.17 37.43 6.09
271 272 1.059994 GACTGAAAGAGCATGCGCG 59.940 57.895 16.01 0.00 39.97 6.86
272 273 2.277120 CTGAAAGAGCATGCGCGC 60.277 61.111 27.26 27.26 45.49 6.86
273 274 4.151297 TGAAAGAGCATGCGCGCG 62.151 61.111 28.44 28.44 43.61 6.86
296 297 3.197790 CATTGCCGAGCCACCGAG 61.198 66.667 0.00 0.00 0.00 4.63
297 298 3.706373 ATTGCCGAGCCACCGAGT 61.706 61.111 0.00 0.00 0.00 4.18
298 299 3.254024 ATTGCCGAGCCACCGAGTT 62.254 57.895 0.00 0.00 0.00 3.01
299 300 3.876589 TTGCCGAGCCACCGAGTTC 62.877 63.158 0.00 0.00 0.00 3.01
301 302 4.052229 CCGAGCCACCGAGTTCGT 62.052 66.667 0.48 0.00 37.74 3.85
302 303 2.504244 CGAGCCACCGAGTTCGTC 60.504 66.667 0.48 0.00 37.74 4.20
303 304 2.963371 GAGCCACCGAGTTCGTCT 59.037 61.111 0.48 0.00 37.74 4.18
304 305 1.444553 GAGCCACCGAGTTCGTCTG 60.445 63.158 0.48 0.00 37.74 3.51
305 306 2.432628 GCCACCGAGTTCGTCTGG 60.433 66.667 9.84 9.84 37.95 3.86
306 307 2.927580 GCCACCGAGTTCGTCTGGA 61.928 63.158 15.75 0.00 37.42 3.86
307 308 1.663739 CCACCGAGTTCGTCTGGAA 59.336 57.895 8.92 0.00 37.42 3.53
308 309 0.388649 CCACCGAGTTCGTCTGGAAG 60.389 60.000 8.92 0.00 37.42 3.46
309 310 0.314302 CACCGAGTTCGTCTGGAAGT 59.686 55.000 0.48 0.00 41.03 3.01
310 311 0.597072 ACCGAGTTCGTCTGGAAGTC 59.403 55.000 0.48 2.02 46.99 3.01
316 317 2.160063 TCGTCTGGAAGTCGACTCG 58.840 57.895 20.33 16.60 46.77 4.18
317 318 0.320160 TCGTCTGGAAGTCGACTCGA 60.320 55.000 20.33 18.70 46.77 4.04
318 319 2.266354 TCGTCTGGAAGTCGACTCGAG 61.266 57.143 20.33 17.36 46.77 4.04
319 320 0.448593 GTCTGGAAGTCGACTCGAGG 59.551 60.000 20.33 10.06 36.23 4.63
320 321 1.137825 CTGGAAGTCGACTCGAGGC 59.862 63.158 20.33 14.00 36.23 4.70
321 322 1.303398 TGGAAGTCGACTCGAGGCT 60.303 57.895 20.33 0.77 36.23 4.58
322 323 0.035725 TGGAAGTCGACTCGAGGCTA 60.036 55.000 20.33 1.35 36.23 3.93
323 324 0.377905 GGAAGTCGACTCGAGGCTAC 59.622 60.000 20.33 16.36 36.23 3.58
324 325 0.026544 GAAGTCGACTCGAGGCTACG 59.973 60.000 20.33 15.57 36.23 3.51
325 326 0.390866 AAGTCGACTCGAGGCTACGA 60.391 55.000 20.33 17.50 36.23 3.43
326 327 1.347907 GTCGACTCGAGGCTACGAC 59.652 63.158 26.53 26.53 44.19 4.34
327 328 1.083242 GTCGACTCGAGGCTACGACT 61.083 60.000 29.76 8.14 46.00 4.18
328 329 0.805322 TCGACTCGAGGCTACGACTC 60.805 60.000 17.99 0.76 37.37 3.36
329 330 0.806884 CGACTCGAGGCTACGACTCT 60.807 60.000 17.99 0.00 35.13 3.24
330 331 0.932399 GACTCGAGGCTACGACTCTC 59.068 60.000 18.41 0.00 35.13 3.20
334 335 3.901854 GAGGCTACGACTCTCGAAC 57.098 57.895 0.00 0.00 43.74 3.95
335 336 0.377905 GAGGCTACGACTCTCGAACC 59.622 60.000 0.00 0.00 43.74 3.62
336 337 1.031029 AGGCTACGACTCTCGAACCC 61.031 60.000 0.00 0.00 43.74 4.11
337 338 1.432657 GCTACGACTCTCGAACCCC 59.567 63.158 0.00 0.00 43.74 4.95
338 339 1.720301 CTACGACTCTCGAACCCCG 59.280 63.158 0.00 0.00 43.74 5.73
339 340 0.742281 CTACGACTCTCGAACCCCGA 60.742 60.000 0.00 0.00 43.74 5.14
346 347 4.508128 TCGAACCCCGATCGCTGC 62.508 66.667 10.32 0.00 43.23 5.25
347 348 4.812476 CGAACCCCGATCGCTGCA 62.812 66.667 10.32 0.00 41.76 4.41
348 349 3.195698 GAACCCCGATCGCTGCAC 61.196 66.667 10.32 0.00 0.00 4.57
349 350 3.950794 GAACCCCGATCGCTGCACA 62.951 63.158 10.32 0.00 0.00 4.57
350 351 3.329542 AACCCCGATCGCTGCACAT 62.330 57.895 10.32 0.00 0.00 3.21
351 352 1.966901 AACCCCGATCGCTGCACATA 61.967 55.000 10.32 0.00 0.00 2.29
352 353 1.004560 CCCCGATCGCTGCACATAT 60.005 57.895 10.32 0.00 0.00 1.78
353 354 0.246360 CCCCGATCGCTGCACATATA 59.754 55.000 10.32 0.00 0.00 0.86
354 355 1.134699 CCCCGATCGCTGCACATATAT 60.135 52.381 10.32 0.00 0.00 0.86
355 356 2.100749 CCCCGATCGCTGCACATATATA 59.899 50.000 10.32 0.00 0.00 0.86
356 357 3.243873 CCCCGATCGCTGCACATATATAT 60.244 47.826 10.32 0.00 0.00 0.86
357 358 4.022329 CCCCGATCGCTGCACATATATATA 60.022 45.833 10.32 0.00 0.00 0.86
358 359 5.508994 CCCCGATCGCTGCACATATATATAA 60.509 44.000 10.32 0.00 0.00 0.98
359 360 6.159293 CCCGATCGCTGCACATATATATAAT 58.841 40.000 10.32 0.00 0.00 1.28
360 361 6.309009 CCCGATCGCTGCACATATATATAATC 59.691 42.308 10.32 0.00 0.00 1.75
361 362 6.032880 CCGATCGCTGCACATATATATAATCG 59.967 42.308 10.32 4.08 0.00 3.34
362 363 6.451700 CGATCGCTGCACATATATATAATCGC 60.452 42.308 0.26 0.76 0.00 4.58
363 364 5.587289 TCGCTGCACATATATATAATCGCA 58.413 37.500 0.00 10.91 0.00 5.10
364 365 6.039616 TCGCTGCACATATATATAATCGCAA 58.960 36.000 0.00 0.08 0.00 4.85
365 366 6.198966 TCGCTGCACATATATATAATCGCAAG 59.801 38.462 0.00 9.88 0.00 4.01
366 367 6.562825 CGCTGCACATATATATAATCGCAAGG 60.563 42.308 0.00 5.68 38.47 3.61
367 368 6.479990 GCTGCACATATATATAATCGCAAGGA 59.520 38.462 11.95 0.00 38.47 3.36
368 369 7.011389 GCTGCACATATATATAATCGCAAGGAA 59.989 37.037 11.95 0.00 38.47 3.36
369 370 8.785329 TGCACATATATATAATCGCAAGGAAA 57.215 30.769 9.60 0.00 38.47 3.13
370 371 8.882736 TGCACATATATATAATCGCAAGGAAAG 58.117 33.333 9.60 0.00 38.47 2.62
371 372 7.852945 GCACATATATATAATCGCAAGGAAAGC 59.147 37.037 0.00 0.00 38.47 3.51
372 373 8.882736 CACATATATATAATCGCAAGGAAAGCA 58.117 33.333 0.00 0.00 38.47 3.91
373 374 9.448438 ACATATATATAATCGCAAGGAAAGCAA 57.552 29.630 0.00 0.00 38.47 3.91
377 378 3.940209 AATCGCAAGGAAAGCAAATCA 57.060 38.095 0.00 0.00 38.47 2.57
378 379 2.704725 TCGCAAGGAAAGCAAATCAC 57.295 45.000 0.00 0.00 38.47 3.06
379 380 1.269448 TCGCAAGGAAAGCAAATCACC 59.731 47.619 0.00 0.00 38.47 4.02
380 381 1.701704 GCAAGGAAAGCAAATCACCG 58.298 50.000 0.00 0.00 0.00 4.94
381 382 1.701704 CAAGGAAAGCAAATCACCGC 58.298 50.000 0.00 0.00 0.00 5.68
382 383 1.000385 CAAGGAAAGCAAATCACCGCA 60.000 47.619 0.00 0.00 0.00 5.69
383 384 0.598065 AGGAAAGCAAATCACCGCAC 59.402 50.000 0.00 0.00 0.00 5.34
384 385 0.388520 GGAAAGCAAATCACCGCACC 60.389 55.000 0.00 0.00 0.00 5.01
385 386 0.313672 GAAAGCAAATCACCGCACCA 59.686 50.000 0.00 0.00 0.00 4.17
386 387 0.314935 AAAGCAAATCACCGCACCAG 59.685 50.000 0.00 0.00 0.00 4.00
387 388 0.823356 AAGCAAATCACCGCACCAGT 60.823 50.000 0.00 0.00 0.00 4.00
388 389 1.081242 GCAAATCACCGCACCAGTG 60.081 57.895 0.00 0.00 36.54 3.66
390 391 0.950836 CAAATCACCGCACCAGTGAA 59.049 50.000 0.99 0.00 46.67 3.18
391 392 1.336440 CAAATCACCGCACCAGTGAAA 59.664 47.619 0.99 0.00 46.67 2.69
392 393 1.238439 AATCACCGCACCAGTGAAAG 58.762 50.000 0.99 0.00 46.67 2.62
393 394 0.108585 ATCACCGCACCAGTGAAAGT 59.891 50.000 0.99 0.00 46.67 2.66
394 395 0.753867 TCACCGCACCAGTGAAAGTA 59.246 50.000 0.99 0.00 41.17 2.24
395 396 0.865769 CACCGCACCAGTGAAAGTAC 59.134 55.000 0.99 0.00 37.42 2.73
396 397 0.466543 ACCGCACCAGTGAAAGTACA 59.533 50.000 0.99 0.00 0.00 2.90
431 432 4.473520 CCCGCATCGAGCCCAACT 62.474 66.667 0.00 0.00 41.38 3.16
486 488 0.469892 CCTGGTTTTCCTGTTGGGCT 60.470 55.000 0.00 0.00 41.38 5.19
698 712 1.611673 CCTTTCACTCGCTCACCCATT 60.612 52.381 0.00 0.00 0.00 3.16
756 771 3.576356 CGGCGGCTGCGATTTCAT 61.576 61.111 12.29 0.00 44.10 2.57
829 856 0.621571 ATCTGGTGCTCCCCTTGCTA 60.622 55.000 1.59 0.00 0.00 3.49
843 870 0.392461 TTGCTATTGGCCACCGTCTC 60.392 55.000 3.88 0.00 40.92 3.36
847 874 1.252215 TATTGGCCACCGTCTCGTCA 61.252 55.000 3.88 0.00 0.00 4.35
877 904 2.768344 CCATGGCTCCCCCTACGT 60.768 66.667 0.00 0.00 0.00 3.57
895 922 1.078637 TCGTCCTCGTCTCCGATGT 60.079 57.895 0.00 0.00 43.27 3.06
1005 1034 4.395625 TCGATGTCGACTAGGTTATGGAT 58.604 43.478 17.92 0.00 44.22 3.41
1029 1058 2.909006 ACGGATGAGGCTGATAATCCAT 59.091 45.455 12.83 0.29 38.85 3.41
1136 1165 2.622977 GCTATGGTCCATTGTTTCCCCA 60.623 50.000 10.33 0.00 0.00 4.96
1228 1257 6.870439 GCTTAGAATGAAAAGAGCACCATTTT 59.130 34.615 0.00 0.00 30.29 1.82
1248 1277 0.035458 CCAGGCTTGTCGAGACCTTT 59.965 55.000 0.34 0.00 31.76 3.11
1358 1388 3.157087 GGTTCAGGGTCATTCACAACAT 58.843 45.455 0.00 0.00 0.00 2.71
1770 1801 4.525024 TGTCATGCATGTACATCCATGAA 58.475 39.130 33.71 23.57 43.77 2.57
1808 1839 7.507277 AGAATCAAGATAGTCATACCTGTGCTA 59.493 37.037 0.00 0.00 0.00 3.49
1880 1911 4.096231 CCACTTCCATGACAATAAATCGCA 59.904 41.667 0.00 0.00 0.00 5.10
1979 2010 3.007473 GGTTTTGGATCCGATAACCCA 57.993 47.619 22.63 0.00 33.72 4.51
2221 2252 1.086696 ACGAGATTTTGCGGACCATG 58.913 50.000 0.00 0.00 0.00 3.66
2256 2287 2.166459 GCTAAAGGCCCACAAGATTTCC 59.834 50.000 0.00 0.00 34.27 3.13
2342 2373 3.496331 CCGAATATTTGGGCCCAACTAT 58.504 45.455 37.33 34.10 34.63 2.12
2425 2456 1.657751 GACTTTCGGCCTGGGAATGC 61.658 60.000 0.00 0.00 0.00 3.56
2522 2553 4.098807 ACAATTAAGCCCAACGTGACTTTT 59.901 37.500 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.101415 GACAAGCAGGAGCCAAGTTTTT 59.899 45.455 0.00 0.00 43.56 1.94
28 29 1.683385 GACAAGCAGGAGCCAAGTTTT 59.317 47.619 0.00 0.00 43.56 2.43
29 30 1.322442 GACAAGCAGGAGCCAAGTTT 58.678 50.000 0.00 0.00 43.56 2.66
30 31 0.886490 CGACAAGCAGGAGCCAAGTT 60.886 55.000 0.00 0.00 43.56 2.66
31 32 1.302033 CGACAAGCAGGAGCCAAGT 60.302 57.895 0.00 0.00 43.56 3.16
32 33 3.571119 CGACAAGCAGGAGCCAAG 58.429 61.111 0.00 0.00 43.56 3.61
42 43 1.580845 ATTGAGCTGTGGCGACAAGC 61.581 55.000 15.09 15.09 46.06 4.01
43 44 0.167470 CATTGAGCTGTGGCGACAAG 59.833 55.000 2.34 0.00 46.06 3.16
44 45 1.236616 CCATTGAGCTGTGGCGACAA 61.237 55.000 2.34 0.00 46.06 3.18
45 46 1.672030 CCATTGAGCTGTGGCGACA 60.672 57.895 0.33 0.33 44.37 4.35
46 47 1.364626 CTCCATTGAGCTGTGGCGAC 61.365 60.000 0.00 0.00 44.37 5.19
47 48 1.078918 CTCCATTGAGCTGTGGCGA 60.079 57.895 0.00 0.00 44.37 5.54
48 49 0.957395 AACTCCATTGAGCTGTGGCG 60.957 55.000 0.00 0.00 42.74 5.69
49 50 1.200948 GAAACTCCATTGAGCTGTGGC 59.799 52.381 0.00 0.00 42.74 5.01
50 51 2.486982 CAGAAACTCCATTGAGCTGTGG 59.513 50.000 0.00 0.00 42.74 4.17
51 52 3.405831 TCAGAAACTCCATTGAGCTGTG 58.594 45.455 0.00 0.00 42.74 3.66
52 53 3.777106 TCAGAAACTCCATTGAGCTGT 57.223 42.857 0.00 0.00 42.74 4.40
53 54 3.377485 CCATCAGAAACTCCATTGAGCTG 59.623 47.826 0.00 0.00 42.74 4.24
54 55 3.618351 CCATCAGAAACTCCATTGAGCT 58.382 45.455 0.00 0.00 42.74 4.09
55 56 2.098770 GCCATCAGAAACTCCATTGAGC 59.901 50.000 0.00 0.00 42.74 4.26
56 57 2.686915 GGCCATCAGAAACTCCATTGAG 59.313 50.000 0.00 0.00 44.62 3.02
57 58 2.621407 GGGCCATCAGAAACTCCATTGA 60.621 50.000 4.39 0.00 0.00 2.57
58 59 1.753073 GGGCCATCAGAAACTCCATTG 59.247 52.381 4.39 0.00 0.00 2.82
59 60 1.342374 GGGGCCATCAGAAACTCCATT 60.342 52.381 4.39 0.00 0.00 3.16
60 61 0.259938 GGGGCCATCAGAAACTCCAT 59.740 55.000 4.39 0.00 0.00 3.41
61 62 0.846427 AGGGGCCATCAGAAACTCCA 60.846 55.000 4.39 0.00 0.00 3.86
62 63 0.394899 CAGGGGCCATCAGAAACTCC 60.395 60.000 4.39 0.00 0.00 3.85
63 64 0.329596 ACAGGGGCCATCAGAAACTC 59.670 55.000 4.39 0.00 0.00 3.01
64 65 0.779997 AACAGGGGCCATCAGAAACT 59.220 50.000 4.39 0.00 0.00 2.66
65 66 2.507407 TAACAGGGGCCATCAGAAAC 57.493 50.000 4.39 0.00 0.00 2.78
66 67 5.103728 TCAATATAACAGGGGCCATCAGAAA 60.104 40.000 4.39 0.00 0.00 2.52
67 68 4.415179 TCAATATAACAGGGGCCATCAGAA 59.585 41.667 4.39 0.00 0.00 3.02
68 69 3.980022 TCAATATAACAGGGGCCATCAGA 59.020 43.478 4.39 0.00 0.00 3.27
69 70 4.330250 CTCAATATAACAGGGGCCATCAG 58.670 47.826 4.39 0.00 0.00 2.90
70 71 3.498481 GCTCAATATAACAGGGGCCATCA 60.498 47.826 4.39 0.00 0.00 3.07
71 72 3.084786 GCTCAATATAACAGGGGCCATC 58.915 50.000 4.39 0.00 0.00 3.51
72 73 2.225117 GGCTCAATATAACAGGGGCCAT 60.225 50.000 4.39 0.00 38.35 4.40
73 74 1.144913 GGCTCAATATAACAGGGGCCA 59.855 52.381 4.39 0.00 38.35 5.36
74 75 1.144913 TGGCTCAATATAACAGGGGCC 59.855 52.381 0.00 0.00 38.87 5.80
75 76 2.508526 CTGGCTCAATATAACAGGGGC 58.491 52.381 0.00 0.00 0.00 5.80
76 77 2.107204 AGCTGGCTCAATATAACAGGGG 59.893 50.000 0.00 0.00 0.00 4.79
77 78 3.498774 AGCTGGCTCAATATAACAGGG 57.501 47.619 0.00 0.00 0.00 4.45
78 79 3.004106 GCAAGCTGGCTCAATATAACAGG 59.996 47.826 5.60 0.00 0.00 4.00
79 80 3.628942 TGCAAGCTGGCTCAATATAACAG 59.371 43.478 15.68 0.00 34.04 3.16
80 81 3.619419 TGCAAGCTGGCTCAATATAACA 58.381 40.909 15.68 0.00 34.04 2.41
81 82 4.220533 CTGCAAGCTGGCTCAATATAAC 57.779 45.455 15.68 0.00 34.04 1.89
102 103 2.338785 GCACCTTCAGAGCCAAGGC 61.339 63.158 2.02 2.02 43.96 4.35
103 104 0.959372 CTGCACCTTCAGAGCCAAGG 60.959 60.000 0.00 0.00 45.41 3.61
104 105 1.584380 GCTGCACCTTCAGAGCCAAG 61.584 60.000 0.00 0.00 36.19 3.61
105 106 1.601759 GCTGCACCTTCAGAGCCAA 60.602 57.895 0.00 0.00 36.19 4.52
106 107 2.033141 GCTGCACCTTCAGAGCCA 59.967 61.111 0.00 0.00 36.19 4.75
107 108 1.601759 TTGCTGCACCTTCAGAGCC 60.602 57.895 0.00 0.00 36.19 4.70
108 109 1.578423 GTTGCTGCACCTTCAGAGC 59.422 57.895 0.00 0.00 36.19 4.09
109 110 0.250640 AGGTTGCTGCACCTTCAGAG 60.251 55.000 15.15 0.00 45.76 3.35
110 111 0.535780 CAGGTTGCTGCACCTTCAGA 60.536 55.000 17.39 0.00 45.76 3.27
111 112 1.954528 CAGGTTGCTGCACCTTCAG 59.045 57.895 17.39 6.80 45.76 3.02
112 113 2.195567 GCAGGTTGCTGCACCTTCA 61.196 57.895 17.39 0.00 45.76 3.02
113 114 2.647297 GCAGGTTGCTGCACCTTC 59.353 61.111 17.39 11.45 45.76 3.46
114 115 2.914097 GGCAGGTTGCTGCACCTT 60.914 61.111 17.39 0.00 45.76 3.50
119 120 2.704342 CCAAACTGGCAGGTTGCTGC 62.704 60.000 34.40 0.00 41.46 5.25
120 121 1.364901 CCAAACTGGCAGGTTGCTG 59.635 57.895 34.40 20.86 41.46 4.41
121 122 3.860681 CCAAACTGGCAGGTTGCT 58.139 55.556 34.40 4.36 41.46 3.91
130 131 1.065600 CACGGTGTTGCCAAACTGG 59.934 57.895 0.00 0.00 41.55 4.00
131 132 0.248458 GACACGGTGTTGCCAAACTG 60.248 55.000 15.94 0.00 37.19 3.16
132 133 0.393808 AGACACGGTGTTGCCAAACT 60.394 50.000 15.94 2.89 37.19 2.66
133 134 0.454196 AAGACACGGTGTTGCCAAAC 59.546 50.000 15.94 0.36 36.97 2.93
134 135 0.453793 CAAGACACGGTGTTGCCAAA 59.546 50.000 15.94 0.00 36.97 3.28
135 136 1.380403 CCAAGACACGGTGTTGCCAA 61.380 55.000 15.94 0.00 35.82 4.52
136 137 1.821759 CCAAGACACGGTGTTGCCA 60.822 57.895 15.94 0.00 35.82 4.92
137 138 1.782028 GACCAAGACACGGTGTTGCC 61.782 60.000 15.94 2.66 35.82 4.52
138 139 0.814010 AGACCAAGACACGGTGTTGC 60.814 55.000 15.94 3.44 35.82 4.17
139 140 1.663695 AAGACCAAGACACGGTGTTG 58.336 50.000 15.94 10.42 38.50 3.33
140 141 1.663695 CAAGACCAAGACACGGTGTT 58.336 50.000 15.94 0.00 40.43 3.32
141 142 0.814010 GCAAGACCAAGACACGGTGT 60.814 55.000 14.66 14.66 36.69 4.16
142 143 0.813610 TGCAAGACCAAGACACGGTG 60.814 55.000 6.58 6.58 36.69 4.94
143 144 0.814010 GTGCAAGACCAAGACACGGT 60.814 55.000 0.00 0.00 40.30 4.83
144 145 0.813610 TGTGCAAGACCAAGACACGG 60.814 55.000 0.00 0.00 33.96 4.94
145 146 0.583438 CTGTGCAAGACCAAGACACG 59.417 55.000 0.00 0.00 33.96 4.49
146 147 1.331756 CACTGTGCAAGACCAAGACAC 59.668 52.381 0.00 0.00 0.00 3.67
147 148 1.065491 ACACTGTGCAAGACCAAGACA 60.065 47.619 7.90 0.00 0.00 3.41
148 149 1.599542 GACACTGTGCAAGACCAAGAC 59.400 52.381 7.90 0.00 0.00 3.01
149 150 1.209261 TGACACTGTGCAAGACCAAGA 59.791 47.619 7.90 0.00 0.00 3.02
150 151 1.667236 TGACACTGTGCAAGACCAAG 58.333 50.000 7.90 0.00 0.00 3.61
151 152 1.948834 CATGACACTGTGCAAGACCAA 59.051 47.619 7.90 0.00 0.00 3.67
152 153 1.140652 TCATGACACTGTGCAAGACCA 59.859 47.619 7.90 0.00 0.00 4.02
153 154 1.532868 GTCATGACACTGTGCAAGACC 59.467 52.381 21.07 9.61 29.27 3.85
154 155 2.212652 TGTCATGACACTGTGCAAGAC 58.787 47.619 24.56 21.97 36.21 3.01
155 156 2.158914 ACTGTCATGACACTGTGCAAGA 60.159 45.455 24.56 6.85 36.21 3.02
156 157 2.216046 ACTGTCATGACACTGTGCAAG 58.784 47.619 24.56 14.25 36.21 4.01
157 158 2.330440 ACTGTCATGACACTGTGCAA 57.670 45.000 24.56 1.13 36.21 4.08
158 159 2.627699 TCTACTGTCATGACACTGTGCA 59.372 45.455 24.56 9.95 36.21 4.57
159 160 3.303881 TCTACTGTCATGACACTGTGC 57.696 47.619 24.56 0.00 36.21 4.57
160 161 5.030936 CGTATCTACTGTCATGACACTGTG 58.969 45.833 24.56 16.72 36.21 3.66
161 162 4.438880 GCGTATCTACTGTCATGACACTGT 60.439 45.833 24.56 22.25 36.21 3.55
162 163 4.038361 GCGTATCTACTGTCATGACACTG 58.962 47.826 24.56 17.79 36.21 3.66
163 164 3.242772 CGCGTATCTACTGTCATGACACT 60.243 47.826 24.56 17.55 36.21 3.55
164 165 3.036633 CGCGTATCTACTGTCATGACAC 58.963 50.000 24.56 11.86 36.21 3.67
165 166 2.540973 GCGCGTATCTACTGTCATGACA 60.541 50.000 26.33 26.33 39.32 3.58
166 167 2.044860 GCGCGTATCTACTGTCATGAC 58.955 52.381 19.27 19.27 0.00 3.06
167 168 1.333791 CGCGCGTATCTACTGTCATGA 60.334 52.381 24.19 0.00 0.00 3.07
168 169 1.045477 CGCGCGTATCTACTGTCATG 58.955 55.000 24.19 0.00 0.00 3.07
169 170 0.661552 ACGCGCGTATCTACTGTCAT 59.338 50.000 37.08 3.77 0.00 3.06
170 171 0.247934 CACGCGCGTATCTACTGTCA 60.248 55.000 37.24 0.00 0.00 3.58
171 172 0.928908 CCACGCGCGTATCTACTGTC 60.929 60.000 37.24 0.00 0.00 3.51
172 173 1.063649 CCACGCGCGTATCTACTGT 59.936 57.895 37.24 6.52 0.00 3.55
173 174 0.928908 GACCACGCGCGTATCTACTG 60.929 60.000 37.24 21.03 0.00 2.74
174 175 1.354506 GACCACGCGCGTATCTACT 59.645 57.895 37.24 13.83 0.00 2.57
175 176 2.002401 CGACCACGCGCGTATCTAC 61.002 63.158 37.24 22.09 0.00 2.59
176 177 2.325511 CGACCACGCGCGTATCTA 59.674 61.111 37.24 0.00 0.00 1.98
177 178 4.547905 CCGACCACGCGCGTATCT 62.548 66.667 37.24 20.49 38.29 1.98
193 194 3.977244 CAACCCTTGCACACGGCC 61.977 66.667 0.00 0.00 43.89 6.13
194 195 3.216292 ACAACCCTTGCACACGGC 61.216 61.111 0.00 0.00 45.13 5.68
195 196 2.721231 CACAACCCTTGCACACGG 59.279 61.111 0.00 0.00 0.00 4.94
196 197 2.026014 GCACAACCCTTGCACACG 59.974 61.111 0.00 0.00 39.93 4.49
197 198 1.675720 AAGGCACAACCCTTGCACAC 61.676 55.000 0.00 0.00 43.43 3.82
198 199 1.381056 AAGGCACAACCCTTGCACA 60.381 52.632 0.00 0.00 43.43 4.57
199 200 1.363807 GAAGGCACAACCCTTGCAC 59.636 57.895 0.00 0.00 45.03 4.57
200 201 3.854856 GAAGGCACAACCCTTGCA 58.145 55.556 0.00 0.00 45.03 4.08
201 202 3.051210 GGAAGGCACAACCCTTGC 58.949 61.111 0.00 0.00 45.03 4.01
202 203 2.369394 GATAGGAAGGCACAACCCTTG 58.631 52.381 0.00 0.00 45.03 3.61
204 205 0.919710 GGATAGGAAGGCACAACCCT 59.080 55.000 0.00 0.00 40.58 4.34
205 206 0.106669 GGGATAGGAAGGCACAACCC 60.107 60.000 0.00 0.00 40.58 4.11
206 207 0.106669 GGGGATAGGAAGGCACAACC 60.107 60.000 0.00 0.00 39.61 3.77
207 208 0.919710 AGGGGATAGGAAGGCACAAC 59.080 55.000 0.00 0.00 0.00 3.32
208 209 0.918983 CAGGGGATAGGAAGGCACAA 59.081 55.000 0.00 0.00 0.00 3.33
209 210 0.044092 TCAGGGGATAGGAAGGCACA 59.956 55.000 0.00 0.00 0.00 4.57
210 211 0.470341 GTCAGGGGATAGGAAGGCAC 59.530 60.000 0.00 0.00 0.00 5.01
211 212 0.694444 GGTCAGGGGATAGGAAGGCA 60.694 60.000 0.00 0.00 0.00 4.75
212 213 1.759459 CGGTCAGGGGATAGGAAGGC 61.759 65.000 0.00 0.00 0.00 4.35
213 214 0.105658 TCGGTCAGGGGATAGGAAGG 60.106 60.000 0.00 0.00 0.00 3.46
214 215 1.789523 TTCGGTCAGGGGATAGGAAG 58.210 55.000 0.00 0.00 0.00 3.46
215 216 1.835531 GTTTCGGTCAGGGGATAGGAA 59.164 52.381 0.00 0.00 0.00 3.36
216 217 1.492764 GTTTCGGTCAGGGGATAGGA 58.507 55.000 0.00 0.00 0.00 2.94
217 218 0.468648 GGTTTCGGTCAGGGGATAGG 59.531 60.000 0.00 0.00 0.00 2.57
218 219 1.139058 CTGGTTTCGGTCAGGGGATAG 59.861 57.143 0.00 0.00 0.00 2.08
219 220 1.200519 CTGGTTTCGGTCAGGGGATA 58.799 55.000 0.00 0.00 0.00 2.59
220 221 0.546747 TCTGGTTTCGGTCAGGGGAT 60.547 55.000 0.00 0.00 0.00 3.85
221 222 0.765135 TTCTGGTTTCGGTCAGGGGA 60.765 55.000 0.00 0.00 0.00 4.81
222 223 0.109723 TTTCTGGTTTCGGTCAGGGG 59.890 55.000 0.00 0.00 0.00 4.79
223 224 1.235724 GTTTCTGGTTTCGGTCAGGG 58.764 55.000 0.00 0.00 0.00 4.45
224 225 0.865769 CGTTTCTGGTTTCGGTCAGG 59.134 55.000 0.00 0.00 0.00 3.86
225 226 1.860676 TCGTTTCTGGTTTCGGTCAG 58.139 50.000 0.00 0.00 0.00 3.51
226 227 2.139917 CATCGTTTCTGGTTTCGGTCA 58.860 47.619 0.00 0.00 0.00 4.02
227 228 2.140717 ACATCGTTTCTGGTTTCGGTC 58.859 47.619 0.00 0.00 0.00 4.79
228 229 2.249844 ACATCGTTTCTGGTTTCGGT 57.750 45.000 0.00 0.00 0.00 4.69
229 230 3.323243 ACTACATCGTTTCTGGTTTCGG 58.677 45.455 0.00 0.00 0.00 4.30
230 231 4.432503 CGAACTACATCGTTTCTGGTTTCG 60.433 45.833 0.00 0.00 38.01 3.46
231 232 4.682860 TCGAACTACATCGTTTCTGGTTTC 59.317 41.667 0.00 0.00 43.19 2.78
232 233 4.446719 GTCGAACTACATCGTTTCTGGTTT 59.553 41.667 0.00 0.00 43.19 3.27
233 234 3.985925 GTCGAACTACATCGTTTCTGGTT 59.014 43.478 0.00 0.00 43.19 3.67
234 235 3.255149 AGTCGAACTACATCGTTTCTGGT 59.745 43.478 0.00 0.00 43.19 4.00
235 236 3.608506 CAGTCGAACTACATCGTTTCTGG 59.391 47.826 0.00 0.00 43.19 3.86
236 237 4.473199 TCAGTCGAACTACATCGTTTCTG 58.527 43.478 0.00 0.00 43.19 3.02
237 238 4.761235 TCAGTCGAACTACATCGTTTCT 57.239 40.909 0.00 0.00 43.19 2.52
238 239 5.628193 TCTTTCAGTCGAACTACATCGTTTC 59.372 40.000 0.00 0.00 43.19 2.78
239 240 5.526115 TCTTTCAGTCGAACTACATCGTTT 58.474 37.500 0.00 0.00 43.19 3.60
240 241 5.117355 TCTTTCAGTCGAACTACATCGTT 57.883 39.130 0.00 0.00 43.19 3.85
241 242 4.724303 CTCTTTCAGTCGAACTACATCGT 58.276 43.478 0.00 0.00 43.19 3.73
242 243 3.544285 GCTCTTTCAGTCGAACTACATCG 59.456 47.826 0.00 0.00 44.04 3.84
243 244 4.486090 TGCTCTTTCAGTCGAACTACATC 58.514 43.478 0.00 0.00 0.00 3.06
244 245 4.521130 TGCTCTTTCAGTCGAACTACAT 57.479 40.909 0.00 0.00 0.00 2.29
245 246 4.237724 CATGCTCTTTCAGTCGAACTACA 58.762 43.478 0.00 0.00 0.00 2.74
246 247 3.061429 GCATGCTCTTTCAGTCGAACTAC 59.939 47.826 11.37 0.00 0.00 2.73
247 248 3.254060 GCATGCTCTTTCAGTCGAACTA 58.746 45.455 11.37 0.00 0.00 2.24
248 249 2.072298 GCATGCTCTTTCAGTCGAACT 58.928 47.619 11.37 0.00 0.00 3.01
249 250 1.201855 CGCATGCTCTTTCAGTCGAAC 60.202 52.381 17.13 0.00 0.00 3.95
250 251 1.070821 CGCATGCTCTTTCAGTCGAA 58.929 50.000 17.13 0.00 0.00 3.71
251 252 1.354337 GCGCATGCTCTTTCAGTCGA 61.354 55.000 17.13 0.00 38.39 4.20
252 253 1.059994 GCGCATGCTCTTTCAGTCG 59.940 57.895 17.13 0.00 38.39 4.18
253 254 1.059994 CGCGCATGCTCTTTCAGTC 59.940 57.895 17.13 0.00 39.65 3.51
254 255 3.031964 GCGCGCATGCTCTTTCAGT 62.032 57.895 29.10 0.00 39.65 3.41
255 256 2.277120 GCGCGCATGCTCTTTCAG 60.277 61.111 29.10 0.00 39.65 3.02
256 257 4.151297 CGCGCGCATGCTCTTTCA 62.151 61.111 32.61 0.00 39.65 2.69
279 280 3.197790 CTCGGTGGCTCGGCAATG 61.198 66.667 0.00 0.00 0.00 2.82
280 281 3.254024 AACTCGGTGGCTCGGCAAT 62.254 57.895 0.00 0.00 0.00 3.56
281 282 3.876589 GAACTCGGTGGCTCGGCAA 62.877 63.158 0.00 0.00 0.00 4.52
282 283 4.373116 GAACTCGGTGGCTCGGCA 62.373 66.667 0.00 0.00 0.00 5.69
284 285 3.966026 GACGAACTCGGTGGCTCGG 62.966 68.421 3.88 0.00 44.95 4.63
285 286 2.504244 GACGAACTCGGTGGCTCG 60.504 66.667 3.88 0.00 44.95 5.03
286 287 1.444553 CAGACGAACTCGGTGGCTC 60.445 63.158 3.88 0.00 44.95 4.70
287 288 2.651361 CAGACGAACTCGGTGGCT 59.349 61.111 3.88 0.00 44.95 4.75
288 289 2.430382 TTCCAGACGAACTCGGTGGC 62.430 60.000 14.70 0.00 43.24 5.01
289 290 0.388649 CTTCCAGACGAACTCGGTGG 60.389 60.000 13.76 13.76 44.23 4.61
290 291 0.314302 ACTTCCAGACGAACTCGGTG 59.686 55.000 3.88 0.83 44.95 4.94
291 292 0.597072 GACTTCCAGACGAACTCGGT 59.403 55.000 3.88 0.00 44.95 4.69
292 293 0.454620 CGACTTCCAGACGAACTCGG 60.455 60.000 3.88 0.00 44.95 4.63
293 294 0.516001 TCGACTTCCAGACGAACTCG 59.484 55.000 0.00 0.00 39.20 4.18
294 295 1.536331 AGTCGACTTCCAGACGAACTC 59.464 52.381 13.58 0.00 43.11 3.01
295 296 1.536331 GAGTCGACTTCCAGACGAACT 59.464 52.381 21.08 0.00 43.11 3.01
296 297 1.725292 CGAGTCGACTTCCAGACGAAC 60.725 57.143 21.08 1.32 43.11 3.95
297 298 0.516001 CGAGTCGACTTCCAGACGAA 59.484 55.000 21.08 0.00 43.11 3.85
298 299 0.320160 TCGAGTCGACTTCCAGACGA 60.320 55.000 21.08 19.02 39.78 4.20
299 300 0.095589 CTCGAGTCGACTTCCAGACG 59.904 60.000 21.08 16.95 41.86 4.18
300 301 0.448593 CCTCGAGTCGACTTCCAGAC 59.551 60.000 21.08 4.47 37.63 3.51
301 302 1.306642 GCCTCGAGTCGACTTCCAGA 61.307 60.000 21.08 15.13 0.00 3.86
302 303 1.137825 GCCTCGAGTCGACTTCCAG 59.862 63.158 21.08 14.85 0.00 3.86
303 304 0.035725 TAGCCTCGAGTCGACTTCCA 60.036 55.000 21.08 5.71 0.00 3.53
304 305 0.377905 GTAGCCTCGAGTCGACTTCC 59.622 60.000 21.08 6.87 0.00 3.46
305 306 0.026544 CGTAGCCTCGAGTCGACTTC 59.973 60.000 21.08 11.81 0.00 3.01
306 307 0.390866 TCGTAGCCTCGAGTCGACTT 60.391 55.000 21.08 4.85 34.85 3.01
307 308 1.083242 GTCGTAGCCTCGAGTCGACT 61.083 60.000 20.18 20.18 44.52 4.18
308 309 1.347907 GTCGTAGCCTCGAGTCGAC 59.652 63.158 22.85 22.85 42.48 4.20
309 310 0.805322 GAGTCGTAGCCTCGAGTCGA 60.805 60.000 15.64 15.64 40.52 4.20
310 311 0.806884 AGAGTCGTAGCCTCGAGTCG 60.807 60.000 21.61 6.09 40.52 4.18
311 312 0.932399 GAGAGTCGTAGCCTCGAGTC 59.068 60.000 20.85 20.85 40.52 3.36
312 313 0.806884 CGAGAGTCGTAGCCTCGAGT 60.807 60.000 12.31 7.96 40.52 4.18
313 314 0.528033 TCGAGAGTCGTAGCCTCGAG 60.528 60.000 5.13 5.13 40.86 4.04
314 315 0.108472 TTCGAGAGTCGTAGCCTCGA 60.108 55.000 9.28 9.28 43.43 4.04
315 316 0.026544 GTTCGAGAGTCGTAGCCTCG 59.973 60.000 0.00 0.00 41.35 4.63
316 317 0.377905 GGTTCGAGAGTCGTAGCCTC 59.622 60.000 0.00 0.00 41.35 4.70
317 318 2.480100 GGTTCGAGAGTCGTAGCCT 58.520 57.895 0.00 0.00 41.35 4.58
318 319 1.432657 GGGTTCGAGAGTCGTAGCC 59.567 63.158 8.16 8.16 46.91 3.93
319 320 1.432657 GGGGTTCGAGAGTCGTAGC 59.567 63.158 0.00 0.00 41.35 3.58
320 321 0.742281 TCGGGGTTCGAGAGTCGTAG 60.742 60.000 0.00 0.00 43.74 3.51
321 322 1.296392 TCGGGGTTCGAGAGTCGTA 59.704 57.895 0.00 0.00 43.74 3.43
322 323 2.033141 TCGGGGTTCGAGAGTCGT 59.967 61.111 0.00 0.00 43.74 4.34
330 331 4.812476 TGCAGCGATCGGGGTTCG 62.812 66.667 18.30 0.00 39.55 3.95
331 332 3.195698 GTGCAGCGATCGGGGTTC 61.196 66.667 18.30 0.00 0.00 3.62
332 333 1.966901 TATGTGCAGCGATCGGGGTT 61.967 55.000 18.30 0.00 0.00 4.11
333 334 1.758440 ATATGTGCAGCGATCGGGGT 61.758 55.000 18.30 0.00 0.00 4.95
334 335 0.246360 TATATGTGCAGCGATCGGGG 59.754 55.000 18.30 0.00 0.00 5.73
335 336 2.299993 ATATATGTGCAGCGATCGGG 57.700 50.000 18.30 0.00 0.00 5.14
336 337 6.032880 CGATTATATATATGTGCAGCGATCGG 59.967 42.308 18.30 1.65 0.00 4.18
337 338 6.451700 GCGATTATATATATGTGCAGCGATCG 60.452 42.308 11.69 11.69 35.81 3.69
338 339 6.363357 TGCGATTATATATATGTGCAGCGATC 59.637 38.462 5.44 0.00 0.00 3.69
339 340 6.215845 TGCGATTATATATATGTGCAGCGAT 58.784 36.000 5.44 0.00 0.00 4.58
340 341 5.587289 TGCGATTATATATATGTGCAGCGA 58.413 37.500 5.44 0.00 0.00 4.93
341 342 5.888412 TGCGATTATATATATGTGCAGCG 57.112 39.130 5.44 3.10 0.00 5.18
342 343 6.479990 TCCTTGCGATTATATATATGTGCAGC 59.520 38.462 5.44 5.53 32.12 5.25
343 344 8.424274 TTCCTTGCGATTATATATATGTGCAG 57.576 34.615 5.44 4.90 32.12 4.41
344 345 8.785329 TTTCCTTGCGATTATATATATGTGCA 57.215 30.769 5.44 7.10 0.00 4.57
345 346 7.852945 GCTTTCCTTGCGATTATATATATGTGC 59.147 37.037 5.44 4.80 0.00 4.57
346 347 8.882736 TGCTTTCCTTGCGATTATATATATGTG 58.117 33.333 5.44 0.00 0.00 3.21
347 348 9.448438 TTGCTTTCCTTGCGATTATATATATGT 57.552 29.630 5.44 0.00 0.00 2.29
351 352 9.013229 TGATTTGCTTTCCTTGCGATTATATAT 57.987 29.630 0.00 0.00 0.00 0.86
352 353 8.289618 GTGATTTGCTTTCCTTGCGATTATATA 58.710 33.333 0.00 0.00 0.00 0.86
353 354 7.141363 GTGATTTGCTTTCCTTGCGATTATAT 58.859 34.615 0.00 0.00 0.00 0.86
354 355 6.459573 GGTGATTTGCTTTCCTTGCGATTATA 60.460 38.462 0.00 0.00 0.00 0.98
355 356 5.343249 GTGATTTGCTTTCCTTGCGATTAT 58.657 37.500 0.00 0.00 0.00 1.28
356 357 4.380444 GGTGATTTGCTTTCCTTGCGATTA 60.380 41.667 0.00 0.00 0.00 1.75
357 358 3.578688 GTGATTTGCTTTCCTTGCGATT 58.421 40.909 0.00 0.00 0.00 3.34
358 359 2.094545 GGTGATTTGCTTTCCTTGCGAT 60.095 45.455 0.00 0.00 0.00 4.58
359 360 1.269448 GGTGATTTGCTTTCCTTGCGA 59.731 47.619 0.00 0.00 0.00 5.10
360 361 1.701704 GGTGATTTGCTTTCCTTGCG 58.298 50.000 0.00 0.00 0.00 4.85
361 362 1.701704 CGGTGATTTGCTTTCCTTGC 58.298 50.000 0.00 0.00 0.00 4.01
362 363 1.000385 TGCGGTGATTTGCTTTCCTTG 60.000 47.619 0.00 0.00 0.00 3.61
363 364 1.000274 GTGCGGTGATTTGCTTTCCTT 60.000 47.619 0.00 0.00 0.00 3.36
364 365 0.598065 GTGCGGTGATTTGCTTTCCT 59.402 50.000 0.00 0.00 0.00 3.36
365 366 0.388520 GGTGCGGTGATTTGCTTTCC 60.389 55.000 0.00 0.00 0.00 3.13
366 367 0.313672 TGGTGCGGTGATTTGCTTTC 59.686 50.000 0.00 0.00 0.00 2.62
367 368 0.314935 CTGGTGCGGTGATTTGCTTT 59.685 50.000 0.00 0.00 0.00 3.51
368 369 0.823356 ACTGGTGCGGTGATTTGCTT 60.823 50.000 0.00 0.00 0.00 3.91
369 370 1.228245 ACTGGTGCGGTGATTTGCT 60.228 52.632 0.00 0.00 0.00 3.91
370 371 1.081242 CACTGGTGCGGTGATTTGC 60.081 57.895 0.00 0.00 42.79 3.68
371 372 2.627791 TCACTGGTGCGGTGATTTG 58.372 52.632 0.00 0.00 43.73 2.32
375 376 0.753867 TACTTTCACTGGTGCGGTGA 59.246 50.000 0.00 0.00 46.42 4.02
376 377 0.865769 GTACTTTCACTGGTGCGGTG 59.134 55.000 0.00 0.00 41.65 4.94
377 378 0.466543 TGTACTTTCACTGGTGCGGT 59.533 50.000 0.00 0.00 0.00 5.68
378 379 1.588674 TTGTACTTTCACTGGTGCGG 58.411 50.000 0.00 0.00 0.00 5.69
379 380 2.032030 CCTTTGTACTTTCACTGGTGCG 60.032 50.000 0.00 0.00 0.00 5.34
380 381 2.293399 CCCTTTGTACTTTCACTGGTGC 59.707 50.000 0.00 0.00 0.00 5.01
381 382 2.293399 GCCCTTTGTACTTTCACTGGTG 59.707 50.000 0.00 0.00 0.00 4.17
382 383 2.583143 GCCCTTTGTACTTTCACTGGT 58.417 47.619 0.00 0.00 0.00 4.00
383 384 1.535462 CGCCCTTTGTACTTTCACTGG 59.465 52.381 0.00 0.00 0.00 4.00
384 385 2.032030 CACGCCCTTTGTACTTTCACTG 60.032 50.000 0.00 0.00 0.00 3.66
385 386 2.218603 CACGCCCTTTGTACTTTCACT 58.781 47.619 0.00 0.00 0.00 3.41
386 387 1.944709 ACACGCCCTTTGTACTTTCAC 59.055 47.619 0.00 0.00 0.00 3.18
387 388 2.335316 ACACGCCCTTTGTACTTTCA 57.665 45.000 0.00 0.00 0.00 2.69
388 389 3.368495 CAAACACGCCCTTTGTACTTTC 58.632 45.455 0.00 0.00 0.00 2.62
389 390 2.100087 CCAAACACGCCCTTTGTACTTT 59.900 45.455 0.00 0.00 0.00 2.66
390 391 1.679153 CCAAACACGCCCTTTGTACTT 59.321 47.619 0.00 0.00 0.00 2.24
391 392 1.314730 CCAAACACGCCCTTTGTACT 58.685 50.000 0.00 0.00 0.00 2.73
392 393 1.026584 ACCAAACACGCCCTTTGTAC 58.973 50.000 0.00 0.00 0.00 2.90
393 394 1.405821 CAACCAAACACGCCCTTTGTA 59.594 47.619 0.00 0.00 0.00 2.41
394 395 0.174617 CAACCAAACACGCCCTTTGT 59.825 50.000 0.00 0.00 0.00 2.83
395 396 1.151172 GCAACCAAACACGCCCTTTG 61.151 55.000 0.00 0.00 0.00 2.77
396 397 1.142965 GCAACCAAACACGCCCTTT 59.857 52.632 0.00 0.00 0.00 3.11
486 488 0.250252 TTGAGGAGCGTGTGATGCAA 60.250 50.000 0.00 0.00 31.07 4.08
829 856 2.107041 TTGACGAGACGGTGGCCAAT 62.107 55.000 7.24 0.00 0.00 3.16
843 870 2.665649 TGGCACATACTAGGTTGACG 57.334 50.000 0.00 0.00 0.00 4.35
895 922 2.606519 AGGGGTGCTGCTTACCGA 60.607 61.111 0.00 0.00 39.14 4.69
1005 1034 0.829990 TTATCAGCCTCATCCGTGCA 59.170 50.000 0.00 0.00 0.00 4.57
1136 1165 2.649742 TTGGATCCTCTCCTGTTCCT 57.350 50.000 14.23 0.00 45.21 3.36
1228 1257 0.832135 AAGGTCTCGACAAGCCTGGA 60.832 55.000 0.00 0.00 33.46 3.86
1263 1292 6.317140 CACTGGTGTTGATGCTATCTTGTAAT 59.683 38.462 0.00 0.00 0.00 1.89
1358 1388 3.198635 GGTCTCCATTGATCTCCTGAACA 59.801 47.826 0.00 0.00 0.00 3.18
1412 1442 1.909302 CTCCTCTAAGCTCCCCAACAA 59.091 52.381 0.00 0.00 0.00 2.83
1870 1901 5.276868 GCACTTCTATGACGTGCGATTTATT 60.277 40.000 12.11 0.00 45.01 1.40
1880 1911 3.243336 GACGAAAGCACTTCTATGACGT 58.757 45.455 0.00 0.00 31.20 4.34
1979 2010 0.732571 CATTGGTCGCGGCTGTTAAT 59.267 50.000 11.94 3.95 0.00 1.40
2284 2315 2.906691 CACAAAAATCTTGTGGGCCA 57.093 45.000 0.00 0.00 44.33 5.36
2342 2373 1.295423 GCCGAAAGTCACTGGGCTA 59.705 57.895 7.40 0.00 40.59 3.93
2502 2533 3.005367 CCAAAAGTCACGTTGGGCTTAAT 59.995 43.478 5.58 0.00 40.59 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.