Multiple sequence alignment - TraesCS6D01G312200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G312200 chr6D 100.000 3079 0 0 1 3079 421660816 421663894 0.000000e+00 5686.0
1 TraesCS6D01G312200 chr6D 97.503 2683 48 10 399 3079 421679203 421681868 0.000000e+00 4566.0
2 TraesCS6D01G312200 chr6D 91.531 2326 125 33 784 3079 420970525 420968242 0.000000e+00 3138.0
3 TraesCS6D01G312200 chr6D 92.032 2259 130 26 711 2936 421468282 421466041 0.000000e+00 3129.0
4 TraesCS6D01G312200 chr6D 98.625 1673 21 2 399 2069 421688542 421690214 0.000000e+00 2961.0
5 TraesCS6D01G312200 chr6D 87.724 1955 140 42 690 2607 422215061 422216952 0.000000e+00 2189.0
6 TraesCS6D01G312200 chr6D 86.737 1998 183 50 951 2920 422601248 422603191 0.000000e+00 2146.0
7 TraesCS6D01G312200 chr6D 95.299 1021 43 3 2061 3079 421695315 421696332 0.000000e+00 1615.0
8 TraesCS6D01G312200 chr6D 98.995 398 4 0 1 398 28929527 28929130 0.000000e+00 713.0
9 TraesCS6D01G312200 chr6D 92.632 475 25 6 399 868 422600655 422601124 0.000000e+00 675.0
10 TraesCS6D01G312200 chr6D 93.233 266 12 2 399 664 422214805 422215064 1.340000e-103 387.0
11 TraesCS6D01G312200 chr6D 95.105 143 6 1 2937 3079 421464187 421464046 1.110000e-54 224.0
12 TraesCS6D01G312200 chr6D 87.027 185 19 4 2747 2930 422217105 422217285 1.450000e-48 204.0
13 TraesCS6D01G312200 chr6A 91.401 1884 118 21 651 2493 564279239 564277359 0.000000e+00 2542.0
14 TraesCS6D01G312200 chr6A 84.749 2354 202 85 627 2930 565340013 565342259 0.000000e+00 2213.0
15 TraesCS6D01G312200 chr6A 93.416 243 15 1 400 642 565317560 565317801 2.920000e-95 359.0
16 TraesCS6D01G312200 chr6B 89.614 1656 117 24 701 2306 634504304 634502654 0.000000e+00 2054.0
17 TraesCS6D01G312200 chr6B 86.414 1899 193 45 1050 2930 636746185 636748036 0.000000e+00 2017.0
18 TraesCS6D01G312200 chr6B 93.103 116 8 0 399 514 636744221 636744336 1.470000e-38 171.0
19 TraesCS6D01G312200 chr6B 85.549 173 10 6 685 842 636744349 636744521 1.900000e-37 167.0
20 TraesCS6D01G312200 chr6B 84.783 92 8 2 632 718 634559733 634559643 1.520000e-13 87.9
21 TraesCS6D01G312200 chr2D 99.497 398 2 0 1 398 566583461 566583064 0.000000e+00 725.0
22 TraesCS6D01G312200 chr5D 99.246 398 3 0 1 398 23349250 23348853 0.000000e+00 719.0
23 TraesCS6D01G312200 chr5D 98.747 399 5 0 1 399 431934350 431934748 0.000000e+00 710.0
24 TraesCS6D01G312200 chr4D 99.246 398 3 0 1 398 118586147 118586544 0.000000e+00 719.0
25 TraesCS6D01G312200 chr1D 99.246 398 3 0 1 398 419987789 419987392 0.000000e+00 719.0
26 TraesCS6D01G312200 chrUn 98.995 398 4 0 1 398 81362864 81363261 0.000000e+00 713.0
27 TraesCS6D01G312200 chr7D 98.995 398 4 0 1 398 597984775 597985172 0.000000e+00 713.0
28 TraesCS6D01G312200 chr3D 98.515 404 5 1 1 403 520050598 520050195 0.000000e+00 712.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G312200 chr6D 421660816 421663894 3078 False 5686.000000 5686 100.000000 1 3079 1 chr6D.!!$F1 3078
1 TraesCS6D01G312200 chr6D 421679203 421681868 2665 False 4566.000000 4566 97.503000 399 3079 1 chr6D.!!$F2 2680
2 TraesCS6D01G312200 chr6D 420968242 420970525 2283 True 3138.000000 3138 91.531000 784 3079 1 chr6D.!!$R2 2295
3 TraesCS6D01G312200 chr6D 421688542 421690214 1672 False 2961.000000 2961 98.625000 399 2069 1 chr6D.!!$F3 1670
4 TraesCS6D01G312200 chr6D 421464046 421468282 4236 True 1676.500000 3129 93.568500 711 3079 2 chr6D.!!$R3 2368
5 TraesCS6D01G312200 chr6D 421695315 421696332 1017 False 1615.000000 1615 95.299000 2061 3079 1 chr6D.!!$F4 1018
6 TraesCS6D01G312200 chr6D 422600655 422603191 2536 False 1410.500000 2146 89.684500 399 2920 2 chr6D.!!$F6 2521
7 TraesCS6D01G312200 chr6D 422214805 422217285 2480 False 926.666667 2189 89.328000 399 2930 3 chr6D.!!$F5 2531
8 TraesCS6D01G312200 chr6A 564277359 564279239 1880 True 2542.000000 2542 91.401000 651 2493 1 chr6A.!!$R1 1842
9 TraesCS6D01G312200 chr6A 565340013 565342259 2246 False 2213.000000 2213 84.749000 627 2930 1 chr6A.!!$F2 2303
10 TraesCS6D01G312200 chr6B 634502654 634504304 1650 True 2054.000000 2054 89.614000 701 2306 1 chr6B.!!$R1 1605
11 TraesCS6D01G312200 chr6B 636744221 636748036 3815 False 785.000000 2017 88.355333 399 2930 3 chr6B.!!$F1 2531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 359 0.035439 ACTGAACCGGGGCTAATGTG 60.035 55.0 6.32 0.0 0.0 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 3918 1.135489 TGTTAGAGTCATGTCGACCGC 60.135 52.381 14.12 0.0 46.69 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.421399 ATTTAGGTCAAATTTCCTGTATAAGGG 57.579 33.333 8.37 0.00 39.01 3.95
41 42 7.440523 CCTGTATAAGGGCATCTATTTTCAC 57.559 40.000 0.00 0.00 43.15 3.18
42 43 7.227156 CCTGTATAAGGGCATCTATTTTCACT 58.773 38.462 0.00 0.00 43.15 3.41
43 44 7.721399 CCTGTATAAGGGCATCTATTTTCACTT 59.279 37.037 0.00 0.00 43.15 3.16
44 45 9.125026 CTGTATAAGGGCATCTATTTTCACTTT 57.875 33.333 0.00 0.00 0.00 2.66
48 49 9.920946 ATAAGGGCATCTATTTTCACTTTAAGA 57.079 29.630 0.00 0.00 0.00 2.10
49 50 7.872113 AGGGCATCTATTTTCACTTTAAGAG 57.128 36.000 0.00 0.00 0.00 2.85
50 51 7.633789 AGGGCATCTATTTTCACTTTAAGAGA 58.366 34.615 0.00 0.00 0.00 3.10
51 52 8.109634 AGGGCATCTATTTTCACTTTAAGAGAA 58.890 33.333 0.00 0.00 0.00 2.87
52 53 8.401709 GGGCATCTATTTTCACTTTAAGAGAAG 58.598 37.037 0.00 0.00 0.00 2.85
53 54 7.912773 GGCATCTATTTTCACTTTAAGAGAAGC 59.087 37.037 0.00 0.88 36.27 3.86
54 55 8.672815 GCATCTATTTTCACTTTAAGAGAAGCT 58.327 33.333 0.00 0.00 34.99 3.74
56 57 9.950496 ATCTATTTTCACTTTAAGAGAAGCTCA 57.050 29.630 0.00 0.00 32.06 4.26
57 58 9.778741 TCTATTTTCACTTTAAGAGAAGCTCAA 57.221 29.630 0.00 0.00 32.06 3.02
58 59 9.818796 CTATTTTCACTTTAAGAGAAGCTCAAC 57.181 33.333 0.00 0.00 32.06 3.18
59 60 7.624360 TTTTCACTTTAAGAGAAGCTCAACA 57.376 32.000 0.00 0.00 32.06 3.33
60 61 7.624360 TTTCACTTTAAGAGAAGCTCAACAA 57.376 32.000 0.00 0.00 32.06 2.83
61 62 6.851222 TCACTTTAAGAGAAGCTCAACAAG 57.149 37.500 0.00 0.00 32.06 3.16
62 63 5.760253 TCACTTTAAGAGAAGCTCAACAAGG 59.240 40.000 0.00 0.00 32.06 3.61
63 64 4.517075 ACTTTAAGAGAAGCTCAACAAGGC 59.483 41.667 0.00 0.00 32.06 4.35
64 65 2.645838 AAGAGAAGCTCAACAAGGCA 57.354 45.000 0.00 0.00 32.06 4.75
65 66 2.875094 AGAGAAGCTCAACAAGGCAT 57.125 45.000 0.00 0.00 32.06 4.40
66 67 3.988976 AGAGAAGCTCAACAAGGCATA 57.011 42.857 0.00 0.00 32.06 3.14
67 68 3.871485 AGAGAAGCTCAACAAGGCATAG 58.129 45.455 0.00 0.00 32.06 2.23
68 69 3.517100 AGAGAAGCTCAACAAGGCATAGA 59.483 43.478 0.00 0.00 32.06 1.98
69 70 3.870419 GAGAAGCTCAACAAGGCATAGAG 59.130 47.826 0.00 0.00 0.00 2.43
70 71 2.706339 AGCTCAACAAGGCATAGAGG 57.294 50.000 0.00 0.00 0.00 3.69
71 72 1.211457 AGCTCAACAAGGCATAGAGGG 59.789 52.381 0.00 0.00 0.00 4.30
72 73 1.210478 GCTCAACAAGGCATAGAGGGA 59.790 52.381 0.00 0.00 0.00 4.20
73 74 2.911484 CTCAACAAGGCATAGAGGGAC 58.089 52.381 0.00 0.00 0.00 4.46
74 75 1.207089 TCAACAAGGCATAGAGGGACG 59.793 52.381 0.00 0.00 0.00 4.79
75 76 0.541863 AACAAGGCATAGAGGGACGG 59.458 55.000 0.00 0.00 0.00 4.79
76 77 1.338136 ACAAGGCATAGAGGGACGGG 61.338 60.000 0.00 0.00 0.00 5.28
77 78 2.444256 AAGGCATAGAGGGACGGGC 61.444 63.158 0.00 0.00 0.00 6.13
78 79 2.844839 GGCATAGAGGGACGGGCT 60.845 66.667 0.00 0.00 0.00 5.19
79 80 2.444256 GGCATAGAGGGACGGGCTT 61.444 63.158 0.00 0.00 0.00 4.35
80 81 1.119574 GGCATAGAGGGACGGGCTTA 61.120 60.000 0.00 0.00 0.00 3.09
81 82 0.977395 GCATAGAGGGACGGGCTTAT 59.023 55.000 0.00 0.00 0.00 1.73
82 83 2.176889 GCATAGAGGGACGGGCTTATA 58.823 52.381 0.00 0.00 0.00 0.98
83 84 2.565834 GCATAGAGGGACGGGCTTATAA 59.434 50.000 0.00 0.00 0.00 0.98
84 85 3.007614 GCATAGAGGGACGGGCTTATAAA 59.992 47.826 0.00 0.00 0.00 1.40
85 86 4.566987 CATAGAGGGACGGGCTTATAAAC 58.433 47.826 0.00 0.00 0.00 2.01
86 87 2.760581 AGAGGGACGGGCTTATAAACT 58.239 47.619 0.00 0.00 0.00 2.66
87 88 2.434702 AGAGGGACGGGCTTATAAACTG 59.565 50.000 0.00 0.00 0.00 3.16
88 89 1.489230 AGGGACGGGCTTATAAACTGG 59.511 52.381 0.00 0.00 0.00 4.00
89 90 1.211212 GGGACGGGCTTATAAACTGGT 59.789 52.381 0.00 0.00 0.00 4.00
90 91 2.285977 GGACGGGCTTATAAACTGGTG 58.714 52.381 0.00 0.00 0.00 4.17
91 92 2.355412 GGACGGGCTTATAAACTGGTGT 60.355 50.000 0.00 0.00 0.00 4.16
92 93 2.676342 GACGGGCTTATAAACTGGTGTG 59.324 50.000 0.00 0.00 0.00 3.82
93 94 2.303600 ACGGGCTTATAAACTGGTGTGA 59.696 45.455 0.00 0.00 0.00 3.58
94 95 2.936498 CGGGCTTATAAACTGGTGTGAG 59.064 50.000 0.00 0.00 0.00 3.51
95 96 2.683362 GGGCTTATAAACTGGTGTGAGC 59.317 50.000 0.00 0.00 0.00 4.26
96 97 2.351726 GGCTTATAAACTGGTGTGAGCG 59.648 50.000 0.00 0.00 0.00 5.03
97 98 2.223044 GCTTATAAACTGGTGTGAGCGC 60.223 50.000 0.00 0.00 0.00 5.92
98 99 2.018542 TATAAACTGGTGTGAGCGCC 57.981 50.000 2.29 0.00 45.23 6.53
99 100 0.676782 ATAAACTGGTGTGAGCGCCC 60.677 55.000 2.29 0.00 44.42 6.13
100 101 1.764571 TAAACTGGTGTGAGCGCCCT 61.765 55.000 2.29 0.00 44.42 5.19
101 102 2.624674 AAACTGGTGTGAGCGCCCTT 62.625 55.000 2.29 0.00 44.42 3.95
102 103 2.743928 CTGGTGTGAGCGCCCTTC 60.744 66.667 2.29 0.00 44.42 3.46
103 104 4.680237 TGGTGTGAGCGCCCTTCG 62.680 66.667 2.29 0.00 44.42 3.79
114 115 4.016706 CCCTTCGGTTGGCGAGGT 62.017 66.667 0.00 0.00 0.00 3.85
115 116 2.742372 CCTTCGGTTGGCGAGGTG 60.742 66.667 0.00 0.00 0.00 4.00
116 117 2.742372 CTTCGGTTGGCGAGGTGG 60.742 66.667 0.00 0.00 0.00 4.61
117 118 4.323477 TTCGGTTGGCGAGGTGGG 62.323 66.667 0.00 0.00 0.00 4.61
120 121 3.637273 GGTTGGCGAGGTGGGACT 61.637 66.667 0.00 0.00 0.00 3.85
121 122 2.288025 GGTTGGCGAGGTGGGACTA 61.288 63.158 0.00 0.00 0.00 2.59
122 123 1.675219 GTTGGCGAGGTGGGACTAA 59.325 57.895 0.00 0.00 0.00 2.24
123 124 0.035739 GTTGGCGAGGTGGGACTAAA 59.964 55.000 0.00 0.00 0.00 1.85
124 125 0.035739 TTGGCGAGGTGGGACTAAAC 59.964 55.000 0.00 0.00 0.00 2.01
125 126 1.122632 TGGCGAGGTGGGACTAAACA 61.123 55.000 0.00 0.00 0.00 2.83
126 127 0.672711 GGCGAGGTGGGACTAAACAC 60.673 60.000 0.00 0.00 36.89 3.32
127 128 0.320697 GCGAGGTGGGACTAAACACT 59.679 55.000 0.00 0.00 37.72 3.55
128 129 1.939838 GCGAGGTGGGACTAAACACTG 60.940 57.143 0.00 0.00 37.72 3.66
129 130 1.337823 CGAGGTGGGACTAAACACTGG 60.338 57.143 0.00 0.00 37.72 4.00
130 131 0.400594 AGGTGGGACTAAACACTGGC 59.599 55.000 0.00 0.00 37.72 4.85
131 132 0.608308 GGTGGGACTAAACACTGGCC 60.608 60.000 0.00 0.00 37.72 5.36
132 133 0.953960 GTGGGACTAAACACTGGCCG 60.954 60.000 0.00 0.00 34.84 6.13
133 134 2.038837 GGGACTAAACACTGGCCGC 61.039 63.158 0.00 0.00 0.00 6.53
134 135 1.302192 GGACTAAACACTGGCCGCA 60.302 57.895 0.00 0.00 0.00 5.69
135 136 0.887387 GGACTAAACACTGGCCGCAA 60.887 55.000 0.00 0.00 0.00 4.85
136 137 0.237498 GACTAAACACTGGCCGCAAC 59.763 55.000 0.00 0.00 0.00 4.17
137 138 0.179029 ACTAAACACTGGCCGCAACT 60.179 50.000 0.00 0.00 0.00 3.16
138 139 1.071071 ACTAAACACTGGCCGCAACTA 59.929 47.619 0.00 0.00 0.00 2.24
139 140 1.732259 CTAAACACTGGCCGCAACTAG 59.268 52.381 0.00 0.00 0.00 2.57
140 141 0.889186 AAACACTGGCCGCAACTAGG 60.889 55.000 0.00 0.00 0.00 3.02
141 142 1.764571 AACACTGGCCGCAACTAGGA 61.765 55.000 0.00 0.00 0.00 2.94
142 143 1.741770 CACTGGCCGCAACTAGGAC 60.742 63.158 0.00 0.00 37.28 3.85
143 144 2.125106 CTGGCCGCAACTAGGACC 60.125 66.667 0.00 0.00 35.39 4.46
144 145 2.925706 TGGCCGCAACTAGGACCA 60.926 61.111 0.00 0.00 35.39 4.02
145 146 2.125106 GGCCGCAACTAGGACCAG 60.125 66.667 0.00 0.00 0.00 4.00
146 147 2.820037 GCCGCAACTAGGACCAGC 60.820 66.667 0.00 0.00 0.00 4.85
147 148 2.125106 CCGCAACTAGGACCAGCC 60.125 66.667 0.00 0.00 0.00 4.85
148 149 2.125106 CGCAACTAGGACCAGCCC 60.125 66.667 0.00 0.00 37.37 5.19
149 150 2.660064 CGCAACTAGGACCAGCCCT 61.660 63.158 0.00 0.00 40.29 5.19
150 151 1.685820 GCAACTAGGACCAGCCCTT 59.314 57.895 0.00 0.00 37.74 3.95
151 152 0.038310 GCAACTAGGACCAGCCCTTT 59.962 55.000 0.00 0.00 37.74 3.11
152 153 1.280998 GCAACTAGGACCAGCCCTTTA 59.719 52.381 0.00 0.00 37.74 1.85
153 154 2.681097 GCAACTAGGACCAGCCCTTTAG 60.681 54.545 0.00 0.00 37.74 1.85
154 155 2.572104 CAACTAGGACCAGCCCTTTAGT 59.428 50.000 0.00 0.00 37.74 2.24
155 156 2.468915 ACTAGGACCAGCCCTTTAGTC 58.531 52.381 0.00 0.00 37.74 2.59
157 158 1.608154 GGACCAGCCCTTTAGTCCC 59.392 63.158 0.00 0.00 42.49 4.46
158 159 1.221021 GACCAGCCCTTTAGTCCCG 59.779 63.158 0.00 0.00 0.00 5.14
159 160 2.253403 GACCAGCCCTTTAGTCCCGG 62.253 65.000 0.00 0.00 0.00 5.73
160 161 2.298661 CCAGCCCTTTAGTCCCGGT 61.299 63.158 0.00 0.00 0.00 5.28
161 162 1.683441 CAGCCCTTTAGTCCCGGTT 59.317 57.895 0.00 0.00 0.00 4.44
162 163 0.037734 CAGCCCTTTAGTCCCGGTTT 59.962 55.000 0.00 0.00 0.00 3.27
163 164 0.037734 AGCCCTTTAGTCCCGGTTTG 59.962 55.000 0.00 0.00 0.00 2.93
164 165 0.251033 GCCCTTTAGTCCCGGTTTGT 60.251 55.000 0.00 0.00 0.00 2.83
165 166 1.530323 CCCTTTAGTCCCGGTTTGTG 58.470 55.000 0.00 0.00 0.00 3.33
166 167 1.530323 CCTTTAGTCCCGGTTTGTGG 58.470 55.000 0.00 0.00 0.00 4.17
167 168 1.202842 CCTTTAGTCCCGGTTTGTGGT 60.203 52.381 0.00 0.00 0.00 4.16
168 169 2.038820 CCTTTAGTCCCGGTTTGTGGTA 59.961 50.000 0.00 0.00 0.00 3.25
169 170 3.307904 CCTTTAGTCCCGGTTTGTGGTAT 60.308 47.826 0.00 0.00 0.00 2.73
170 171 3.337694 TTAGTCCCGGTTTGTGGTATG 57.662 47.619 0.00 0.00 0.00 2.39
171 172 1.354101 AGTCCCGGTTTGTGGTATGA 58.646 50.000 0.00 0.00 0.00 2.15
172 173 1.700739 AGTCCCGGTTTGTGGTATGAA 59.299 47.619 0.00 0.00 0.00 2.57
173 174 1.808343 GTCCCGGTTTGTGGTATGAAC 59.192 52.381 0.00 0.00 0.00 3.18
174 175 1.170442 CCCGGTTTGTGGTATGAACC 58.830 55.000 0.00 0.00 46.98 3.62
185 186 3.189618 GGTATGAACCGGGACTAAAGG 57.810 52.381 6.32 0.00 35.62 3.11
186 187 2.158856 GGTATGAACCGGGACTAAAGGG 60.159 54.545 6.32 0.00 35.62 3.95
187 188 1.665137 ATGAACCGGGACTAAAGGGT 58.335 50.000 6.32 0.00 0.00 4.34
188 189 0.688487 TGAACCGGGACTAAAGGGTG 59.312 55.000 6.32 0.00 31.96 4.61
189 190 0.035725 GAACCGGGACTAAAGGGTGG 60.036 60.000 6.32 0.00 31.96 4.61
190 191 0.769386 AACCGGGACTAAAGGGTGGT 60.769 55.000 6.32 0.00 31.96 4.16
191 192 1.298667 CCGGGACTAAAGGGTGGTG 59.701 63.158 0.00 0.00 0.00 4.17
192 193 1.298667 CGGGACTAAAGGGTGGTGG 59.701 63.158 0.00 0.00 0.00 4.61
193 194 1.689412 GGGACTAAAGGGTGGTGGG 59.311 63.158 0.00 0.00 0.00 4.61
194 195 1.001269 GGACTAAAGGGTGGTGGGC 60.001 63.158 0.00 0.00 0.00 5.36
195 196 1.001269 GACTAAAGGGTGGTGGGCC 60.001 63.158 0.00 0.00 0.00 5.80
196 197 1.776710 ACTAAAGGGTGGTGGGCCA 60.777 57.895 0.00 0.00 43.73 5.36
211 212 4.431131 CCAGGAGCGTGGCCCATT 62.431 66.667 0.00 0.00 0.00 3.16
212 213 3.136123 CAGGAGCGTGGCCCATTG 61.136 66.667 0.00 0.00 0.00 2.82
213 214 4.431131 AGGAGCGTGGCCCATTGG 62.431 66.667 0.00 0.00 0.00 3.16
214 215 4.740822 GGAGCGTGGCCCATTGGT 62.741 66.667 0.00 0.00 0.00 3.67
215 216 3.134127 GAGCGTGGCCCATTGGTC 61.134 66.667 0.00 2.93 36.51 4.02
216 217 4.740822 AGCGTGGCCCATTGGTCC 62.741 66.667 0.00 0.00 34.32 4.46
221 222 4.376170 GGCCCATTGGTCCCGGTT 62.376 66.667 0.00 0.00 0.00 4.44
222 223 2.283604 GCCCATTGGTCCCGGTTT 60.284 61.111 0.00 0.00 0.00 3.27
223 224 2.645192 GCCCATTGGTCCCGGTTTG 61.645 63.158 0.00 0.00 0.00 2.93
224 225 1.228737 CCCATTGGTCCCGGTTTGT 60.229 57.895 0.00 0.00 0.00 2.83
225 226 0.038455 CCCATTGGTCCCGGTTTGTA 59.962 55.000 0.00 0.00 0.00 2.41
226 227 1.170442 CCATTGGTCCCGGTTTGTAC 58.830 55.000 0.00 0.00 0.00 2.90
227 228 1.170442 CATTGGTCCCGGTTTGTACC 58.830 55.000 0.00 0.21 41.33 3.34
228 229 0.772384 ATTGGTCCCGGTTTGTACCA 59.228 50.000 0.00 3.14 45.31 3.25
229 230 0.179023 TTGGTCCCGGTTTGTACCAC 60.179 55.000 0.00 0.00 45.31 4.16
230 231 1.302752 GGTCCCGGTTTGTACCACC 60.303 63.158 0.00 1.81 45.31 4.61
231 232 1.451072 GTCCCGGTTTGTACCACCA 59.549 57.895 0.00 0.00 45.31 4.17
232 233 0.179023 GTCCCGGTTTGTACCACCAA 60.179 55.000 0.00 0.00 45.31 3.67
233 234 0.179023 TCCCGGTTTGTACCACCAAC 60.179 55.000 0.00 0.29 45.31 3.77
234 235 1.174078 CCCGGTTTGTACCACCAACC 61.174 60.000 0.00 7.46 45.31 3.77
235 236 1.508808 CCGGTTTGTACCACCAACCG 61.509 60.000 21.37 21.37 45.31 4.44
236 237 1.508808 CGGTTTGTACCACCAACCGG 61.509 60.000 20.85 0.00 45.31 5.28
237 238 1.174078 GGTTTGTACCACCAACCGGG 61.174 60.000 6.32 0.00 44.36 5.73
238 239 0.179023 GTTTGTACCACCAACCGGGA 60.179 55.000 6.32 0.00 41.15 5.14
239 240 0.179023 TTTGTACCACCAACCGGGAC 60.179 55.000 6.32 0.00 41.15 4.46
240 241 2.054473 TTGTACCACCAACCGGGACC 62.054 60.000 6.32 0.00 36.42 4.46
241 242 2.122503 TACCACCAACCGGGACCA 60.123 61.111 6.32 0.00 41.15 4.02
242 243 1.769295 TACCACCAACCGGGACCAA 60.769 57.895 6.32 0.00 41.15 3.67
243 244 1.351080 TACCACCAACCGGGACCAAA 61.351 55.000 6.32 0.00 41.15 3.28
244 245 1.901464 CCACCAACCGGGACCAAAG 60.901 63.158 6.32 0.00 41.15 2.77
245 246 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
246 247 2.282887 CCAACCGGGACCAAAGGG 60.283 66.667 6.32 0.00 40.01 3.95
261 262 2.502577 GGGTCCATACGAACCGGG 59.497 66.667 6.32 0.00 39.05 5.73
262 263 2.059786 GGGTCCATACGAACCGGGA 61.060 63.158 6.32 0.00 39.05 5.14
263 264 4.821177 GTCCATACGAACCGGGAC 57.179 61.111 6.32 0.00 42.60 4.46
264 265 1.142531 GTCCATACGAACCGGGACC 59.857 63.158 6.32 0.00 43.14 4.46
265 266 1.305129 TCCATACGAACCGGGACCA 60.305 57.895 6.32 0.00 0.00 4.02
266 267 0.903924 TCCATACGAACCGGGACCAA 60.904 55.000 6.32 0.00 0.00 3.67
267 268 0.179468 CCATACGAACCGGGACCAAT 59.821 55.000 6.32 0.00 0.00 3.16
268 269 1.295792 CATACGAACCGGGACCAATG 58.704 55.000 6.32 0.00 0.00 2.82
269 270 0.463116 ATACGAACCGGGACCAATGC 60.463 55.000 6.32 0.00 0.00 3.56
270 271 2.524951 TACGAACCGGGACCAATGCC 62.525 60.000 6.32 0.00 0.00 4.40
271 272 2.754254 GAACCGGGACCAATGCCC 60.754 66.667 6.32 0.00 42.41 5.36
272 273 3.577334 GAACCGGGACCAATGCCCA 62.577 63.158 6.32 0.00 46.36 5.36
273 274 3.879180 AACCGGGACCAATGCCCAC 62.879 63.158 6.32 0.00 46.36 4.61
275 276 4.402528 CGGGACCAATGCCCACGA 62.403 66.667 0.00 0.00 46.36 4.35
276 277 2.438434 GGGACCAATGCCCACGAG 60.438 66.667 0.00 0.00 45.31 4.18
277 278 2.438434 GGACCAATGCCCACGAGG 60.438 66.667 0.00 0.00 39.47 4.63
305 306 2.276740 CCCCCTGGGCTCATGAAC 59.723 66.667 7.39 0.00 35.35 3.18
306 307 2.276740 CCCCTGGGCTCATGAACC 59.723 66.667 7.39 6.60 0.00 3.62
307 308 2.124570 CCCTGGGCTCATGAACCG 60.125 66.667 9.03 5.35 0.00 4.44
308 309 2.124570 CCTGGGCTCATGAACCGG 60.125 66.667 15.05 15.05 0.00 5.28
309 310 2.124570 CTGGGCTCATGAACCGGG 60.125 66.667 6.32 0.00 0.00 5.73
310 311 2.609299 TGGGCTCATGAACCGGGA 60.609 61.111 6.32 0.00 0.00 5.14
311 312 2.124695 GGGCTCATGAACCGGGAC 60.125 66.667 6.32 0.00 0.00 4.46
312 313 2.124695 GGCTCATGAACCGGGACC 60.125 66.667 6.32 0.00 0.00 4.46
313 314 2.668632 GCTCATGAACCGGGACCA 59.331 61.111 6.32 0.00 0.00 4.02
314 315 1.002624 GCTCATGAACCGGGACCAA 60.003 57.895 6.32 0.00 0.00 3.67
315 316 0.394352 GCTCATGAACCGGGACCAAT 60.394 55.000 6.32 0.00 0.00 3.16
316 317 1.382522 CTCATGAACCGGGACCAATG 58.617 55.000 6.32 2.35 0.00 2.82
317 318 0.679640 TCATGAACCGGGACCAATGC 60.680 55.000 6.32 0.00 0.00 3.56
318 319 0.680921 CATGAACCGGGACCAATGCT 60.681 55.000 6.32 0.00 0.00 3.79
319 320 0.394352 ATGAACCGGGACCAATGCTC 60.394 55.000 6.32 0.00 0.00 4.26
320 321 1.002624 GAACCGGGACCAATGCTCA 60.003 57.895 6.32 0.00 0.00 4.26
321 322 1.303317 AACCGGGACCAATGCTCAC 60.303 57.895 6.32 0.00 0.00 3.51
322 323 2.063015 AACCGGGACCAATGCTCACA 62.063 55.000 6.32 0.00 0.00 3.58
323 324 1.077501 CCGGGACCAATGCTCACAT 60.078 57.895 0.00 0.00 38.49 3.21
325 326 1.408127 CCGGGACCAATGCTCACATTA 60.408 52.381 0.00 0.00 44.83 1.90
326 327 1.942657 CGGGACCAATGCTCACATTAG 59.057 52.381 0.00 0.00 44.83 1.73
327 328 2.680805 CGGGACCAATGCTCACATTAGT 60.681 50.000 0.00 0.00 44.83 2.24
330 331 2.945668 GACCAATGCTCACATTAGTCCC 59.054 50.000 6.20 0.00 44.37 4.46
331 332 1.942657 CCAATGCTCACATTAGTCCCG 59.057 52.381 0.00 0.00 44.83 5.14
332 333 1.942657 CAATGCTCACATTAGTCCCGG 59.057 52.381 0.00 0.00 44.83 5.73
333 334 1.204146 ATGCTCACATTAGTCCCGGT 58.796 50.000 0.00 0.00 30.07 5.28
334 335 0.981183 TGCTCACATTAGTCCCGGTT 59.019 50.000 0.00 0.00 0.00 4.44
335 336 1.066430 TGCTCACATTAGTCCCGGTTC 60.066 52.381 0.00 0.00 0.00 3.62
336 337 1.922570 CTCACATTAGTCCCGGTTCG 58.077 55.000 0.00 0.00 0.00 3.95
337 338 1.203994 CTCACATTAGTCCCGGTTCGT 59.796 52.381 0.00 0.00 0.00 3.85
338 339 1.067425 TCACATTAGTCCCGGTTCGTG 60.067 52.381 0.00 0.00 0.00 4.35
339 340 1.067425 CACATTAGTCCCGGTTCGTGA 60.067 52.381 0.00 0.00 0.00 4.35
340 341 1.067354 ACATTAGTCCCGGTTCGTGAC 60.067 52.381 0.00 0.00 34.71 3.67
341 342 1.203994 CATTAGTCCCGGTTCGTGACT 59.796 52.381 13.76 13.76 45.32 3.41
342 343 0.599558 TTAGTCCCGGTTCGTGACTG 59.400 55.000 17.52 0.00 43.49 3.51
343 344 0.250858 TAGTCCCGGTTCGTGACTGA 60.251 55.000 17.52 2.93 43.49 3.41
344 345 1.111116 AGTCCCGGTTCGTGACTGAA 61.111 55.000 9.22 0.00 42.28 3.02
345 346 0.942884 GTCCCGGTTCGTGACTGAAC 60.943 60.000 0.00 10.38 45.91 3.18
349 350 3.946907 GTTCGTGACTGAACCGGG 58.053 61.111 6.32 0.00 41.88 5.73
350 351 1.666872 GTTCGTGACTGAACCGGGG 60.667 63.158 6.32 0.00 41.88 5.73
351 352 3.524648 TTCGTGACTGAACCGGGGC 62.525 63.158 6.32 0.00 0.00 5.80
352 353 4.003788 CGTGACTGAACCGGGGCT 62.004 66.667 6.32 0.00 0.00 5.19
353 354 2.642254 CGTGACTGAACCGGGGCTA 61.642 63.158 6.32 0.00 0.00 3.93
354 355 1.675219 GTGACTGAACCGGGGCTAA 59.325 57.895 6.32 0.00 0.00 3.09
355 356 0.252197 GTGACTGAACCGGGGCTAAT 59.748 55.000 6.32 0.00 0.00 1.73
356 357 0.251916 TGACTGAACCGGGGCTAATG 59.748 55.000 6.32 0.00 0.00 1.90
357 358 0.252197 GACTGAACCGGGGCTAATGT 59.748 55.000 6.32 0.00 0.00 2.71
358 359 0.035439 ACTGAACCGGGGCTAATGTG 60.035 55.000 6.32 0.00 0.00 3.21
359 360 0.251916 CTGAACCGGGGCTAATGTGA 59.748 55.000 6.32 0.00 0.00 3.58
360 361 0.693622 TGAACCGGGGCTAATGTGAA 59.306 50.000 6.32 0.00 0.00 3.18
361 362 1.074084 TGAACCGGGGCTAATGTGAAA 59.926 47.619 6.32 0.00 0.00 2.69
362 363 2.164338 GAACCGGGGCTAATGTGAAAA 58.836 47.619 6.32 0.00 0.00 2.29
363 364 1.541379 ACCGGGGCTAATGTGAAAAC 58.459 50.000 6.32 0.00 0.00 2.43
364 365 1.074889 ACCGGGGCTAATGTGAAAACT 59.925 47.619 6.32 0.00 0.00 2.66
365 366 1.472480 CCGGGGCTAATGTGAAAACTG 59.528 52.381 0.00 0.00 0.00 3.16
366 367 2.159382 CGGGGCTAATGTGAAAACTGT 58.841 47.619 0.00 0.00 0.00 3.55
367 368 2.161609 CGGGGCTAATGTGAAAACTGTC 59.838 50.000 0.00 0.00 0.00 3.51
368 369 2.492088 GGGGCTAATGTGAAAACTGTCC 59.508 50.000 0.00 0.00 0.00 4.02
369 370 3.421844 GGGCTAATGTGAAAACTGTCCT 58.578 45.455 0.00 0.00 0.00 3.85
370 371 3.191371 GGGCTAATGTGAAAACTGTCCTG 59.809 47.826 0.00 0.00 0.00 3.86
371 372 3.821033 GGCTAATGTGAAAACTGTCCTGT 59.179 43.478 0.00 0.00 0.00 4.00
372 373 4.320494 GGCTAATGTGAAAACTGTCCTGTG 60.320 45.833 0.00 0.00 0.00 3.66
373 374 4.515191 GCTAATGTGAAAACTGTCCTGTGA 59.485 41.667 0.00 0.00 0.00 3.58
374 375 4.900635 AATGTGAAAACTGTCCTGTGAC 57.099 40.909 0.00 0.00 42.12 3.67
375 376 2.639065 TGTGAAAACTGTCCTGTGACC 58.361 47.619 0.00 0.00 41.01 4.02
376 377 2.238646 TGTGAAAACTGTCCTGTGACCT 59.761 45.455 0.00 0.00 41.01 3.85
377 378 3.452990 TGTGAAAACTGTCCTGTGACCTA 59.547 43.478 0.00 0.00 41.01 3.08
378 379 4.080807 TGTGAAAACTGTCCTGTGACCTAA 60.081 41.667 0.00 0.00 41.01 2.69
379 380 4.511826 GTGAAAACTGTCCTGTGACCTAAG 59.488 45.833 0.00 0.00 41.01 2.18
380 381 2.841442 AACTGTCCTGTGACCTAAGC 57.159 50.000 0.00 0.00 41.01 3.09
381 382 0.977395 ACTGTCCTGTGACCTAAGCC 59.023 55.000 0.00 0.00 41.01 4.35
382 383 0.250513 CTGTCCTGTGACCTAAGCCC 59.749 60.000 0.00 0.00 41.01 5.19
383 384 0.178903 TGTCCTGTGACCTAAGCCCT 60.179 55.000 0.00 0.00 41.01 5.19
384 385 0.250513 GTCCTGTGACCTAAGCCCTG 59.749 60.000 0.00 0.00 35.34 4.45
385 386 0.178903 TCCTGTGACCTAAGCCCTGT 60.179 55.000 0.00 0.00 0.00 4.00
386 387 0.693049 CCTGTGACCTAAGCCCTGTT 59.307 55.000 0.00 0.00 0.00 3.16
387 388 1.073923 CCTGTGACCTAAGCCCTGTTT 59.926 52.381 0.00 0.00 0.00 2.83
388 389 2.489073 CCTGTGACCTAAGCCCTGTTTT 60.489 50.000 0.00 0.00 0.00 2.43
389 390 2.814336 CTGTGACCTAAGCCCTGTTTTC 59.186 50.000 0.00 0.00 0.00 2.29
390 391 2.441750 TGTGACCTAAGCCCTGTTTTCT 59.558 45.455 0.00 0.00 0.00 2.52
391 392 3.649023 TGTGACCTAAGCCCTGTTTTCTA 59.351 43.478 0.00 0.00 0.00 2.10
392 393 4.001652 GTGACCTAAGCCCTGTTTTCTAC 58.998 47.826 0.00 0.00 0.00 2.59
393 394 3.908103 TGACCTAAGCCCTGTTTTCTACT 59.092 43.478 0.00 0.00 0.00 2.57
394 395 5.046807 GTGACCTAAGCCCTGTTTTCTACTA 60.047 44.000 0.00 0.00 0.00 1.82
395 396 5.187186 TGACCTAAGCCCTGTTTTCTACTAG 59.813 44.000 0.00 0.00 0.00 2.57
396 397 5.092259 ACCTAAGCCCTGTTTTCTACTAGT 58.908 41.667 0.00 0.00 0.00 2.57
397 398 5.046520 ACCTAAGCCCTGTTTTCTACTAGTG 60.047 44.000 5.39 0.00 0.00 2.74
445 446 2.104792 AGGCTCAACTGTGCTTGAACTA 59.895 45.455 3.99 0.00 35.15 2.24
564 569 5.924356 TGAGTCAACAACTTGATCAACCTA 58.076 37.500 3.38 0.00 38.69 3.08
875 1487 5.900425 TCGTATCGACTGAGTAGAGTACTT 58.100 41.667 0.00 0.00 39.59 2.24
1457 3057 5.796424 AAAGTTGATGGCTTTGAACATCT 57.204 34.783 0.00 0.00 42.96 2.90
1533 3138 6.343716 TGCTACACACCAATCAAATCATTT 57.656 33.333 0.00 0.00 0.00 2.32
2081 3697 7.499200 AGTACTATGGGTAACAATGTAACCA 57.501 36.000 0.00 6.17 44.97 3.67
2610 4247 3.458163 CGTGGAGCTTAGCCCGGA 61.458 66.667 0.73 0.00 0.00 5.14
2811 4486 6.093219 GCTATGGACTCGGTCTTATACGATTA 59.907 42.308 0.00 0.00 38.56 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.227156 AGTGAAAATAGATGCCCTTATACAGG 58.773 38.462 0.00 0.00 43.49 4.00
18 19 8.682936 AAGTGAAAATAGATGCCCTTATACAG 57.317 34.615 0.00 0.00 0.00 2.74
22 23 9.920946 TCTTAAAGTGAAAATAGATGCCCTTAT 57.079 29.630 0.00 0.00 0.00 1.73
23 24 9.396022 CTCTTAAAGTGAAAATAGATGCCCTTA 57.604 33.333 0.00 0.00 0.00 2.69
24 25 8.109634 TCTCTTAAAGTGAAAATAGATGCCCTT 58.890 33.333 0.00 0.00 0.00 3.95
25 26 7.633789 TCTCTTAAAGTGAAAATAGATGCCCT 58.366 34.615 0.00 0.00 0.00 5.19
26 27 7.865706 TCTCTTAAAGTGAAAATAGATGCCC 57.134 36.000 0.00 0.00 0.00 5.36
27 28 7.912773 GCTTCTCTTAAAGTGAAAATAGATGCC 59.087 37.037 0.00 0.00 28.74 4.40
28 29 8.672815 AGCTTCTCTTAAAGTGAAAATAGATGC 58.327 33.333 0.00 0.00 34.75 3.91
30 31 9.950496 TGAGCTTCTCTTAAAGTGAAAATAGAT 57.050 29.630 0.00 0.00 28.74 1.98
31 32 9.778741 TTGAGCTTCTCTTAAAGTGAAAATAGA 57.221 29.630 0.00 0.00 28.74 1.98
32 33 9.818796 GTTGAGCTTCTCTTAAAGTGAAAATAG 57.181 33.333 0.00 0.00 28.74 1.73
33 34 9.337396 TGTTGAGCTTCTCTTAAAGTGAAAATA 57.663 29.630 0.00 0.00 28.74 1.40
34 35 8.225603 TGTTGAGCTTCTCTTAAAGTGAAAAT 57.774 30.769 0.00 0.00 28.74 1.82
35 36 7.624360 TGTTGAGCTTCTCTTAAAGTGAAAA 57.376 32.000 0.00 0.00 28.74 2.29
36 37 7.201732 CCTTGTTGAGCTTCTCTTAAAGTGAAA 60.202 37.037 0.00 0.00 28.74 2.69
37 38 6.260936 CCTTGTTGAGCTTCTCTTAAAGTGAA 59.739 38.462 0.00 0.00 0.00 3.18
38 39 5.760253 CCTTGTTGAGCTTCTCTTAAAGTGA 59.240 40.000 0.00 0.00 0.00 3.41
39 40 5.561725 GCCTTGTTGAGCTTCTCTTAAAGTG 60.562 44.000 0.00 0.00 0.00 3.16
40 41 4.517075 GCCTTGTTGAGCTTCTCTTAAAGT 59.483 41.667 0.00 0.00 0.00 2.66
41 42 4.516698 TGCCTTGTTGAGCTTCTCTTAAAG 59.483 41.667 0.00 0.00 0.00 1.85
42 43 4.460263 TGCCTTGTTGAGCTTCTCTTAAA 58.540 39.130 0.00 0.00 0.00 1.52
43 44 4.085357 TGCCTTGTTGAGCTTCTCTTAA 57.915 40.909 0.00 0.00 0.00 1.85
44 45 3.769739 TGCCTTGTTGAGCTTCTCTTA 57.230 42.857 0.00 0.00 0.00 2.10
45 46 2.645838 TGCCTTGTTGAGCTTCTCTT 57.354 45.000 0.00 0.00 0.00 2.85
46 47 2.875094 ATGCCTTGTTGAGCTTCTCT 57.125 45.000 0.00 0.00 0.00 3.10
47 48 3.866651 TCTATGCCTTGTTGAGCTTCTC 58.133 45.455 0.00 0.00 0.00 2.87
48 49 3.370315 CCTCTATGCCTTGTTGAGCTTCT 60.370 47.826 0.00 0.00 0.00 2.85
49 50 2.941720 CCTCTATGCCTTGTTGAGCTTC 59.058 50.000 0.00 0.00 0.00 3.86
50 51 2.356535 CCCTCTATGCCTTGTTGAGCTT 60.357 50.000 0.00 0.00 0.00 3.74
51 52 1.211457 CCCTCTATGCCTTGTTGAGCT 59.789 52.381 0.00 0.00 0.00 4.09
52 53 1.210478 TCCCTCTATGCCTTGTTGAGC 59.790 52.381 0.00 0.00 0.00 4.26
53 54 2.739932 CGTCCCTCTATGCCTTGTTGAG 60.740 54.545 0.00 0.00 0.00 3.02
54 55 1.207089 CGTCCCTCTATGCCTTGTTGA 59.793 52.381 0.00 0.00 0.00 3.18
55 56 1.656652 CGTCCCTCTATGCCTTGTTG 58.343 55.000 0.00 0.00 0.00 3.33
56 57 0.541863 CCGTCCCTCTATGCCTTGTT 59.458 55.000 0.00 0.00 0.00 2.83
57 58 1.338136 CCCGTCCCTCTATGCCTTGT 61.338 60.000 0.00 0.00 0.00 3.16
58 59 1.447643 CCCGTCCCTCTATGCCTTG 59.552 63.158 0.00 0.00 0.00 3.61
59 60 2.444256 GCCCGTCCCTCTATGCCTT 61.444 63.158 0.00 0.00 0.00 4.35
60 61 2.844839 GCCCGTCCCTCTATGCCT 60.845 66.667 0.00 0.00 0.00 4.75
61 62 1.119574 TAAGCCCGTCCCTCTATGCC 61.120 60.000 0.00 0.00 0.00 4.40
62 63 0.977395 ATAAGCCCGTCCCTCTATGC 59.023 55.000 0.00 0.00 0.00 3.14
63 64 4.283722 AGTTTATAAGCCCGTCCCTCTATG 59.716 45.833 0.00 0.00 0.00 2.23
64 65 4.283722 CAGTTTATAAGCCCGTCCCTCTAT 59.716 45.833 0.00 0.00 0.00 1.98
65 66 3.640029 CAGTTTATAAGCCCGTCCCTCTA 59.360 47.826 0.00 0.00 0.00 2.43
66 67 2.434702 CAGTTTATAAGCCCGTCCCTCT 59.565 50.000 0.00 0.00 0.00 3.69
67 68 2.484947 CCAGTTTATAAGCCCGTCCCTC 60.485 54.545 0.00 0.00 0.00 4.30
68 69 1.489230 CCAGTTTATAAGCCCGTCCCT 59.511 52.381 0.00 0.00 0.00 4.20
69 70 1.211212 ACCAGTTTATAAGCCCGTCCC 59.789 52.381 0.00 0.00 0.00 4.46
70 71 2.285977 CACCAGTTTATAAGCCCGTCC 58.714 52.381 0.00 0.00 0.00 4.79
71 72 2.676342 CACACCAGTTTATAAGCCCGTC 59.324 50.000 0.00 0.00 0.00 4.79
72 73 2.303600 TCACACCAGTTTATAAGCCCGT 59.696 45.455 0.00 0.00 0.00 5.28
73 74 2.936498 CTCACACCAGTTTATAAGCCCG 59.064 50.000 0.00 0.00 0.00 6.13
74 75 2.683362 GCTCACACCAGTTTATAAGCCC 59.317 50.000 0.00 0.00 0.00 5.19
75 76 2.351726 CGCTCACACCAGTTTATAAGCC 59.648 50.000 0.00 0.00 0.00 4.35
76 77 2.223044 GCGCTCACACCAGTTTATAAGC 60.223 50.000 0.00 0.00 0.00 3.09
77 78 2.351726 GGCGCTCACACCAGTTTATAAG 59.648 50.000 7.64 0.00 0.00 1.73
78 79 2.352388 GGCGCTCACACCAGTTTATAA 58.648 47.619 7.64 0.00 0.00 0.98
79 80 1.406341 GGGCGCTCACACCAGTTTATA 60.406 52.381 7.64 0.00 0.00 0.98
80 81 0.676782 GGGCGCTCACACCAGTTTAT 60.677 55.000 7.64 0.00 0.00 1.40
81 82 1.302192 GGGCGCTCACACCAGTTTA 60.302 57.895 7.64 0.00 0.00 2.01
82 83 2.594592 GGGCGCTCACACCAGTTT 60.595 61.111 7.64 0.00 0.00 2.66
83 84 3.120086 AAGGGCGCTCACACCAGTT 62.120 57.895 11.40 0.00 0.00 3.16
84 85 3.537206 GAAGGGCGCTCACACCAGT 62.537 63.158 11.40 0.00 0.00 4.00
85 86 2.743928 GAAGGGCGCTCACACCAG 60.744 66.667 11.40 0.00 0.00 4.00
86 87 4.680237 CGAAGGGCGCTCACACCA 62.680 66.667 11.40 0.00 0.00 4.17
99 100 2.742372 CCACCTCGCCAACCGAAG 60.742 66.667 0.00 0.00 46.81 3.79
100 101 4.323477 CCCACCTCGCCAACCGAA 62.323 66.667 0.00 0.00 46.81 4.30
103 104 1.833787 TTAGTCCCACCTCGCCAACC 61.834 60.000 0.00 0.00 0.00 3.77
104 105 0.035739 TTTAGTCCCACCTCGCCAAC 59.964 55.000 0.00 0.00 0.00 3.77
105 106 0.035739 GTTTAGTCCCACCTCGCCAA 59.964 55.000 0.00 0.00 0.00 4.52
106 107 1.122632 TGTTTAGTCCCACCTCGCCA 61.123 55.000 0.00 0.00 0.00 5.69
107 108 0.672711 GTGTTTAGTCCCACCTCGCC 60.673 60.000 0.00 0.00 0.00 5.54
108 109 0.320697 AGTGTTTAGTCCCACCTCGC 59.679 55.000 0.00 0.00 31.88 5.03
109 110 1.337823 CCAGTGTTTAGTCCCACCTCG 60.338 57.143 0.00 0.00 31.88 4.63
110 111 1.610886 GCCAGTGTTTAGTCCCACCTC 60.611 57.143 0.00 0.00 31.88 3.85
111 112 0.400594 GCCAGTGTTTAGTCCCACCT 59.599 55.000 0.00 0.00 31.88 4.00
112 113 0.608308 GGCCAGTGTTTAGTCCCACC 60.608 60.000 0.00 0.00 31.88 4.61
113 114 0.953960 CGGCCAGTGTTTAGTCCCAC 60.954 60.000 2.24 0.00 0.00 4.61
114 115 1.373435 CGGCCAGTGTTTAGTCCCA 59.627 57.895 2.24 0.00 0.00 4.37
115 116 2.038837 GCGGCCAGTGTTTAGTCCC 61.039 63.158 2.24 0.00 0.00 4.46
116 117 0.887387 TTGCGGCCAGTGTTTAGTCC 60.887 55.000 2.24 0.00 0.00 3.85
117 118 0.237498 GTTGCGGCCAGTGTTTAGTC 59.763 55.000 2.24 0.00 0.00 2.59
118 119 0.179029 AGTTGCGGCCAGTGTTTAGT 60.179 50.000 2.24 0.00 0.00 2.24
119 120 1.732259 CTAGTTGCGGCCAGTGTTTAG 59.268 52.381 2.24 0.00 0.00 1.85
120 121 1.609580 CCTAGTTGCGGCCAGTGTTTA 60.610 52.381 2.24 0.00 0.00 2.01
121 122 0.889186 CCTAGTTGCGGCCAGTGTTT 60.889 55.000 2.24 0.00 0.00 2.83
122 123 1.302511 CCTAGTTGCGGCCAGTGTT 60.303 57.895 2.24 0.00 0.00 3.32
123 124 2.214216 TCCTAGTTGCGGCCAGTGT 61.214 57.895 2.24 0.00 0.00 3.55
124 125 1.741770 GTCCTAGTTGCGGCCAGTG 60.742 63.158 2.24 0.00 0.00 3.66
125 126 2.663196 GTCCTAGTTGCGGCCAGT 59.337 61.111 2.24 0.00 0.00 4.00
126 127 2.125106 GGTCCTAGTTGCGGCCAG 60.125 66.667 2.24 0.00 0.00 4.85
127 128 2.925706 TGGTCCTAGTTGCGGCCA 60.926 61.111 2.24 0.00 0.00 5.36
128 129 2.125106 CTGGTCCTAGTTGCGGCC 60.125 66.667 0.00 0.00 0.00 6.13
129 130 2.820037 GCTGGTCCTAGTTGCGGC 60.820 66.667 0.00 0.00 0.00 6.53
130 131 2.125106 GGCTGGTCCTAGTTGCGG 60.125 66.667 0.00 0.00 0.00 5.69
131 132 2.125106 GGGCTGGTCCTAGTTGCG 60.125 66.667 0.00 0.00 34.39 4.85
132 133 0.038310 AAAGGGCTGGTCCTAGTTGC 59.962 55.000 0.00 0.00 35.80 4.17
133 134 2.572104 ACTAAAGGGCTGGTCCTAGTTG 59.428 50.000 0.00 0.00 35.80 3.16
134 135 2.838813 GACTAAAGGGCTGGTCCTAGTT 59.161 50.000 0.00 0.00 35.80 2.24
135 136 2.468915 GACTAAAGGGCTGGTCCTAGT 58.531 52.381 0.00 0.00 35.80 2.57
136 137 1.763545 GGACTAAAGGGCTGGTCCTAG 59.236 57.143 0.00 0.00 43.30 3.02
137 138 1.624391 GGGACTAAAGGGCTGGTCCTA 60.624 57.143 10.21 0.00 45.23 2.94
138 139 0.914902 GGGACTAAAGGGCTGGTCCT 60.915 60.000 10.21 0.00 45.23 3.85
139 140 1.608154 GGGACTAAAGGGCTGGTCC 59.392 63.158 0.00 0.00 45.18 4.46
140 141 1.221021 CGGGACTAAAGGGCTGGTC 59.779 63.158 0.00 0.00 0.00 4.02
141 142 2.298661 CCGGGACTAAAGGGCTGGT 61.299 63.158 0.00 0.00 0.00 4.00
142 143 1.848886 AACCGGGACTAAAGGGCTGG 61.849 60.000 6.32 0.00 0.00 4.85
143 144 0.037734 AAACCGGGACTAAAGGGCTG 59.962 55.000 6.32 0.00 0.00 4.85
144 145 0.037734 CAAACCGGGACTAAAGGGCT 59.962 55.000 6.32 0.00 0.00 5.19
145 146 0.251033 ACAAACCGGGACTAAAGGGC 60.251 55.000 6.32 0.00 0.00 5.19
146 147 1.530323 CACAAACCGGGACTAAAGGG 58.470 55.000 6.32 0.00 0.00 3.95
147 148 1.202842 ACCACAAACCGGGACTAAAGG 60.203 52.381 6.32 0.80 0.00 3.11
148 149 2.265589 ACCACAAACCGGGACTAAAG 57.734 50.000 6.32 0.00 0.00 1.85
149 150 3.327172 TCATACCACAAACCGGGACTAAA 59.673 43.478 6.32 0.00 0.00 1.85
150 151 2.905085 TCATACCACAAACCGGGACTAA 59.095 45.455 6.32 0.00 0.00 2.24
151 152 2.538222 TCATACCACAAACCGGGACTA 58.462 47.619 6.32 0.00 0.00 2.59
152 153 1.354101 TCATACCACAAACCGGGACT 58.646 50.000 6.32 0.00 0.00 3.85
153 154 1.808343 GTTCATACCACAAACCGGGAC 59.192 52.381 6.32 0.00 0.00 4.46
154 155 1.271488 GGTTCATACCACAAACCGGGA 60.271 52.381 6.32 0.00 44.36 5.14
155 156 1.170442 GGTTCATACCACAAACCGGG 58.830 55.000 6.32 0.00 44.36 5.73
158 159 1.170442 CCCGGTTCATACCACAAACC 58.830 55.000 0.00 0.00 45.31 3.27
159 160 1.808343 GTCCCGGTTCATACCACAAAC 59.192 52.381 0.00 0.00 45.31 2.93
160 161 1.700739 AGTCCCGGTTCATACCACAAA 59.299 47.619 0.00 0.00 45.31 2.83
161 162 1.354101 AGTCCCGGTTCATACCACAA 58.646 50.000 0.00 0.00 45.31 3.33
162 163 2.234896 TAGTCCCGGTTCATACCACA 57.765 50.000 0.00 0.00 45.31 4.17
163 164 3.528532 CTTTAGTCCCGGTTCATACCAC 58.471 50.000 0.00 0.00 45.31 4.16
164 165 2.502538 CCTTTAGTCCCGGTTCATACCA 59.497 50.000 0.00 0.00 45.31 3.25
165 166 2.158856 CCCTTTAGTCCCGGTTCATACC 60.159 54.545 0.00 0.00 41.33 2.73
166 167 2.502947 ACCCTTTAGTCCCGGTTCATAC 59.497 50.000 0.00 0.00 0.00 2.39
167 168 2.502538 CACCCTTTAGTCCCGGTTCATA 59.497 50.000 0.00 0.00 0.00 2.15
168 169 1.280998 CACCCTTTAGTCCCGGTTCAT 59.719 52.381 0.00 0.00 0.00 2.57
169 170 0.688487 CACCCTTTAGTCCCGGTTCA 59.312 55.000 0.00 0.00 0.00 3.18
170 171 0.035725 CCACCCTTTAGTCCCGGTTC 60.036 60.000 0.00 0.00 0.00 3.62
171 172 0.769386 ACCACCCTTTAGTCCCGGTT 60.769 55.000 0.00 0.00 0.00 4.44
172 173 1.151965 ACCACCCTTTAGTCCCGGT 60.152 57.895 0.00 0.00 0.00 5.28
173 174 1.298667 CACCACCCTTTAGTCCCGG 59.701 63.158 0.00 0.00 0.00 5.73
174 175 1.298667 CCACCACCCTTTAGTCCCG 59.701 63.158 0.00 0.00 0.00 5.14
175 176 1.689412 CCCACCACCCTTTAGTCCC 59.311 63.158 0.00 0.00 0.00 4.46
176 177 1.001269 GCCCACCACCCTTTAGTCC 60.001 63.158 0.00 0.00 0.00 3.85
177 178 1.001269 GGCCCACCACCCTTTAGTC 60.001 63.158 0.00 0.00 35.26 2.59
178 179 1.776710 TGGCCCACCACCCTTTAGT 60.777 57.895 0.00 0.00 42.67 2.24
179 180 1.000896 CTGGCCCACCACCCTTTAG 60.001 63.158 0.00 0.00 42.67 1.85
180 181 2.543797 CCTGGCCCACCACCCTTTA 61.544 63.158 0.00 0.00 42.67 1.85
181 182 3.914713 CCTGGCCCACCACCCTTT 61.915 66.667 0.00 0.00 42.67 3.11
182 183 4.938756 TCCTGGCCCACCACCCTT 62.939 66.667 0.00 0.00 42.67 3.95
194 195 4.431131 AATGGGCCACGCTCCTGG 62.431 66.667 9.28 0.00 0.00 4.45
195 196 3.136123 CAATGGGCCACGCTCCTG 61.136 66.667 9.28 0.00 0.00 3.86
196 197 4.431131 CCAATGGGCCACGCTCCT 62.431 66.667 9.28 0.00 0.00 3.69
197 198 4.740822 ACCAATGGGCCACGCTCC 62.741 66.667 9.28 0.00 37.90 4.70
198 199 3.134127 GACCAATGGGCCACGCTC 61.134 66.667 9.28 0.00 37.90 5.03
205 206 2.283604 AAACCGGGACCAATGGGC 60.284 61.111 6.32 0.00 37.90 5.36
206 207 0.038455 TACAAACCGGGACCAATGGG 59.962 55.000 6.32 0.00 41.29 4.00
207 208 1.170442 GTACAAACCGGGACCAATGG 58.830 55.000 6.32 0.00 0.00 3.16
208 209 1.170442 GGTACAAACCGGGACCAATG 58.830 55.000 6.32 0.00 35.62 2.82
209 210 3.656457 GGTACAAACCGGGACCAAT 57.344 52.632 6.32 0.00 35.62 3.16
218 219 1.174078 CCCGGTTGGTGGTACAAACC 61.174 60.000 7.98 7.98 44.16 3.27
219 220 0.179023 TCCCGGTTGGTGGTACAAAC 60.179 55.000 0.00 0.00 44.16 2.93
220 221 0.179023 GTCCCGGTTGGTGGTACAAA 60.179 55.000 0.00 0.00 44.16 2.83
221 222 1.451072 GTCCCGGTTGGTGGTACAA 59.549 57.895 0.00 0.00 44.16 2.41
222 223 2.518709 GGTCCCGGTTGGTGGTACA 61.519 63.158 0.00 0.00 34.77 2.90
223 224 2.054473 TTGGTCCCGGTTGGTGGTAC 62.054 60.000 0.00 0.00 34.77 3.34
224 225 1.351080 TTTGGTCCCGGTTGGTGGTA 61.351 55.000 0.00 0.00 34.77 3.25
225 226 2.634193 CTTTGGTCCCGGTTGGTGGT 62.634 60.000 0.00 0.00 34.77 4.16
226 227 1.901464 CTTTGGTCCCGGTTGGTGG 60.901 63.158 0.00 0.00 34.77 4.61
227 228 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
228 229 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
229 230 2.282887 CCCTTTGGTCCCGGTTGG 60.283 66.667 0.00 0.00 0.00 3.77
230 231 2.518933 ACCCTTTGGTCCCGGTTG 59.481 61.111 0.00 0.00 43.06 3.77
239 240 1.746470 GGTTCGTATGGACCCTTTGG 58.254 55.000 0.10 0.00 37.80 3.28
240 241 1.365699 CGGTTCGTATGGACCCTTTG 58.634 55.000 6.84 0.00 0.00 2.77
241 242 0.251073 CCGGTTCGTATGGACCCTTT 59.749 55.000 6.84 0.00 0.00 3.11
242 243 1.619807 CCCGGTTCGTATGGACCCTT 61.620 60.000 6.84 0.00 0.00 3.95
243 244 2.062177 CCCGGTTCGTATGGACCCT 61.062 63.158 6.84 0.00 0.00 4.34
244 245 2.059786 TCCCGGTTCGTATGGACCC 61.060 63.158 6.84 0.00 0.00 4.46
245 246 1.142531 GTCCCGGTTCGTATGGACC 59.857 63.158 1.74 1.74 41.14 4.46
246 247 1.142531 GGTCCCGGTTCGTATGGAC 59.857 63.158 0.00 0.00 45.25 4.02
247 248 0.903924 TTGGTCCCGGTTCGTATGGA 60.904 55.000 0.00 0.00 0.00 3.41
248 249 0.179468 ATTGGTCCCGGTTCGTATGG 59.821 55.000 0.00 0.00 0.00 2.74
249 250 1.295792 CATTGGTCCCGGTTCGTATG 58.704 55.000 0.00 0.00 0.00 2.39
250 251 0.463116 GCATTGGTCCCGGTTCGTAT 60.463 55.000 0.00 0.00 0.00 3.06
251 252 1.078988 GCATTGGTCCCGGTTCGTA 60.079 57.895 0.00 0.00 0.00 3.43
252 253 2.359478 GCATTGGTCCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
253 254 3.131478 GGCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
254 255 2.754254 GGGCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 33.43 3.62
255 256 3.585428 TGGGCATTGGTCCCGGTT 61.585 61.111 0.00 0.00 46.92 4.44
256 257 4.360405 GTGGGCATTGGTCCCGGT 62.360 66.667 0.00 0.00 46.92 5.28
258 259 4.402528 TCGTGGGCATTGGTCCCG 62.403 66.667 0.00 0.00 46.92 5.14
259 260 2.438434 CTCGTGGGCATTGGTCCC 60.438 66.667 0.00 0.00 44.17 4.46
260 261 2.438434 CCTCGTGGGCATTGGTCC 60.438 66.667 0.00 0.00 40.08 4.46
289 290 2.276740 GGTTCATGAGCCCAGGGG 59.723 66.667 17.35 3.48 38.57 4.79
290 291 2.124570 CGGTTCATGAGCCCAGGG 60.125 66.667 21.54 0.00 0.00 4.45
291 292 2.124570 CCGGTTCATGAGCCCAGG 60.125 66.667 21.54 14.43 0.00 4.45
292 293 2.124570 CCCGGTTCATGAGCCCAG 60.125 66.667 21.54 13.50 0.00 4.45
293 294 2.609299 TCCCGGTTCATGAGCCCA 60.609 61.111 21.54 4.39 0.00 5.36
294 295 2.124695 GTCCCGGTTCATGAGCCC 60.125 66.667 21.54 12.43 0.00 5.19
295 296 2.124695 GGTCCCGGTTCATGAGCC 60.125 66.667 18.11 18.11 0.00 4.70
296 297 0.394352 ATTGGTCCCGGTTCATGAGC 60.394 55.000 0.00 0.04 0.00 4.26
297 298 1.382522 CATTGGTCCCGGTTCATGAG 58.617 55.000 0.00 0.00 0.00 2.90
298 299 0.679640 GCATTGGTCCCGGTTCATGA 60.680 55.000 0.00 0.00 0.00 3.07
299 300 0.680921 AGCATTGGTCCCGGTTCATG 60.681 55.000 0.00 0.00 0.00 3.07
300 301 0.394352 GAGCATTGGTCCCGGTTCAT 60.394 55.000 0.00 0.00 0.00 2.57
301 302 1.002624 GAGCATTGGTCCCGGTTCA 60.003 57.895 0.00 0.00 0.00 3.18
302 303 1.002624 TGAGCATTGGTCCCGGTTC 60.003 57.895 12.99 0.00 0.00 3.62
303 304 1.303317 GTGAGCATTGGTCCCGGTT 60.303 57.895 12.99 0.00 0.00 4.44
304 305 1.852157 ATGTGAGCATTGGTCCCGGT 61.852 55.000 12.99 0.00 29.54 5.28
305 306 0.680921 AATGTGAGCATTGGTCCCGG 60.681 55.000 12.99 0.00 43.12 5.73
306 307 1.942657 CTAATGTGAGCATTGGTCCCG 59.057 52.381 12.99 0.00 44.32 5.14
311 312 1.942657 CGGGACTAATGTGAGCATTGG 59.057 52.381 3.39 3.10 44.32 3.16
312 313 1.942657 CCGGGACTAATGTGAGCATTG 59.057 52.381 0.00 0.00 44.32 2.82
313 314 1.559682 ACCGGGACTAATGTGAGCATT 59.440 47.619 6.32 0.00 46.14 3.56
314 315 1.204146 ACCGGGACTAATGTGAGCAT 58.796 50.000 6.32 0.00 36.80 3.79
315 316 0.981183 AACCGGGACTAATGTGAGCA 59.019 50.000 6.32 0.00 0.00 4.26
316 317 1.653151 GAACCGGGACTAATGTGAGC 58.347 55.000 6.32 0.00 0.00 4.26
317 318 1.203994 ACGAACCGGGACTAATGTGAG 59.796 52.381 6.32 0.00 0.00 3.51
318 319 1.067425 CACGAACCGGGACTAATGTGA 60.067 52.381 6.32 0.00 28.17 3.58
319 320 1.067425 TCACGAACCGGGACTAATGTG 60.067 52.381 6.32 4.66 32.99 3.21
320 321 1.259609 TCACGAACCGGGACTAATGT 58.740 50.000 6.32 0.00 32.99 2.71
327 328 1.364901 GTTCAGTCACGAACCGGGA 59.635 57.895 6.32 0.00 39.52 5.14
328 329 3.946907 GTTCAGTCACGAACCGGG 58.053 61.111 6.32 0.00 39.52 5.73
332 333 1.666872 CCCCGGTTCAGTCACGAAC 60.667 63.158 0.00 4.51 43.75 3.95
333 334 2.738480 CCCCGGTTCAGTCACGAA 59.262 61.111 0.00 0.00 0.00 3.85
334 335 3.998672 GCCCCGGTTCAGTCACGA 61.999 66.667 0.00 0.00 0.00 4.35
335 336 2.162338 TTAGCCCCGGTTCAGTCACG 62.162 60.000 0.00 0.00 0.00 4.35
336 337 0.252197 ATTAGCCCCGGTTCAGTCAC 59.748 55.000 0.00 0.00 0.00 3.67
337 338 0.251916 CATTAGCCCCGGTTCAGTCA 59.748 55.000 0.00 0.00 0.00 3.41
338 339 0.252197 ACATTAGCCCCGGTTCAGTC 59.748 55.000 0.00 0.00 0.00 3.51
339 340 0.035439 CACATTAGCCCCGGTTCAGT 60.035 55.000 0.00 0.00 0.00 3.41
340 341 0.251916 TCACATTAGCCCCGGTTCAG 59.748 55.000 0.00 0.00 0.00 3.02
341 342 0.693622 TTCACATTAGCCCCGGTTCA 59.306 50.000 0.00 0.00 0.00 3.18
342 343 1.828979 TTTCACATTAGCCCCGGTTC 58.171 50.000 0.00 0.00 0.00 3.62
343 344 1.890489 GTTTTCACATTAGCCCCGGTT 59.110 47.619 0.00 0.00 0.00 4.44
344 345 1.074889 AGTTTTCACATTAGCCCCGGT 59.925 47.619 0.00 0.00 0.00 5.28
345 346 1.472480 CAGTTTTCACATTAGCCCCGG 59.528 52.381 0.00 0.00 0.00 5.73
346 347 2.159382 ACAGTTTTCACATTAGCCCCG 58.841 47.619 0.00 0.00 0.00 5.73
347 348 2.492088 GGACAGTTTTCACATTAGCCCC 59.508 50.000 0.00 0.00 0.00 5.80
348 349 3.191371 CAGGACAGTTTTCACATTAGCCC 59.809 47.826 0.00 0.00 0.00 5.19
349 350 3.821033 ACAGGACAGTTTTCACATTAGCC 59.179 43.478 0.00 0.00 0.00 3.93
350 351 4.515191 TCACAGGACAGTTTTCACATTAGC 59.485 41.667 0.00 0.00 0.00 3.09
351 352 5.049405 GGTCACAGGACAGTTTTCACATTAG 60.049 44.000 0.00 0.00 46.17 1.73
352 353 4.819630 GGTCACAGGACAGTTTTCACATTA 59.180 41.667 0.00 0.00 46.17 1.90
353 354 3.632145 GGTCACAGGACAGTTTTCACATT 59.368 43.478 0.00 0.00 46.17 2.71
354 355 3.117888 AGGTCACAGGACAGTTTTCACAT 60.118 43.478 0.00 0.00 46.17 3.21
355 356 2.238646 AGGTCACAGGACAGTTTTCACA 59.761 45.455 0.00 0.00 46.17 3.58
356 357 2.919228 AGGTCACAGGACAGTTTTCAC 58.081 47.619 0.00 0.00 46.17 3.18
357 358 4.703897 CTTAGGTCACAGGACAGTTTTCA 58.296 43.478 0.00 0.00 46.17 2.69
358 359 3.498777 GCTTAGGTCACAGGACAGTTTTC 59.501 47.826 0.00 0.00 46.17 2.29
359 360 3.477530 GCTTAGGTCACAGGACAGTTTT 58.522 45.455 0.00 0.00 46.17 2.43
360 361 2.224548 GGCTTAGGTCACAGGACAGTTT 60.225 50.000 0.00 0.00 46.17 2.66
361 362 1.348036 GGCTTAGGTCACAGGACAGTT 59.652 52.381 0.00 0.00 46.17 3.16
362 363 0.977395 GGCTTAGGTCACAGGACAGT 59.023 55.000 0.00 0.00 46.17 3.55
363 364 0.250513 GGGCTTAGGTCACAGGACAG 59.749 60.000 0.00 0.00 46.17 3.51
364 365 0.178903 AGGGCTTAGGTCACAGGACA 60.179 55.000 0.00 0.00 46.17 4.02
365 366 0.250513 CAGGGCTTAGGTCACAGGAC 59.749 60.000 0.00 0.00 43.55 3.85
366 367 0.178903 ACAGGGCTTAGGTCACAGGA 60.179 55.000 0.00 0.00 0.00 3.86
367 368 0.693049 AACAGGGCTTAGGTCACAGG 59.307 55.000 0.00 0.00 0.00 4.00
368 369 2.568623 AAACAGGGCTTAGGTCACAG 57.431 50.000 0.00 0.00 0.00 3.66
369 370 2.441750 AGAAAACAGGGCTTAGGTCACA 59.558 45.455 0.00 0.00 0.00 3.58
370 371 3.141767 AGAAAACAGGGCTTAGGTCAC 57.858 47.619 0.00 0.00 0.00 3.67
371 372 3.908103 AGTAGAAAACAGGGCTTAGGTCA 59.092 43.478 0.00 0.00 0.00 4.02
372 373 4.554960 AGTAGAAAACAGGGCTTAGGTC 57.445 45.455 0.00 0.00 0.00 3.85
373 374 5.046520 CACTAGTAGAAAACAGGGCTTAGGT 60.047 44.000 3.59 0.00 0.00 3.08
374 375 5.187186 TCACTAGTAGAAAACAGGGCTTAGG 59.813 44.000 3.59 0.00 0.00 2.69
375 376 6.282199 TCACTAGTAGAAAACAGGGCTTAG 57.718 41.667 3.59 0.00 0.00 2.18
376 377 6.127140 GGATCACTAGTAGAAAACAGGGCTTA 60.127 42.308 3.59 0.00 0.00 3.09
377 378 5.338463 GGATCACTAGTAGAAAACAGGGCTT 60.338 44.000 3.59 0.00 0.00 4.35
378 379 4.162509 GGATCACTAGTAGAAAACAGGGCT 59.837 45.833 3.59 0.00 0.00 5.19
379 380 4.081087 TGGATCACTAGTAGAAAACAGGGC 60.081 45.833 3.59 0.00 0.00 5.19
380 381 5.422331 TCTGGATCACTAGTAGAAAACAGGG 59.578 44.000 3.59 0.00 0.00 4.45
381 382 6.531503 TCTGGATCACTAGTAGAAAACAGG 57.468 41.667 3.59 0.00 0.00 4.00
382 383 7.607250 AGTTCTGGATCACTAGTAGAAAACAG 58.393 38.462 3.59 10.28 0.00 3.16
383 384 7.540474 AGTTCTGGATCACTAGTAGAAAACA 57.460 36.000 3.59 3.18 0.00 2.83
384 385 7.873505 ACAAGTTCTGGATCACTAGTAGAAAAC 59.126 37.037 3.59 0.00 0.00 2.43
385 386 7.963532 ACAAGTTCTGGATCACTAGTAGAAAA 58.036 34.615 3.59 0.00 0.00 2.29
386 387 7.540474 ACAAGTTCTGGATCACTAGTAGAAA 57.460 36.000 3.59 0.00 0.00 2.52
387 388 7.540474 AACAAGTTCTGGATCACTAGTAGAA 57.460 36.000 3.59 0.00 0.00 2.10
388 389 7.159322 GAACAAGTTCTGGATCACTAGTAGA 57.841 40.000 3.59 0.00 36.69 2.59
564 569 0.249741 GGGCGACGGTATTGTATGCT 60.250 55.000 0.00 0.00 0.00 3.79
849 1442 6.985645 AGTACTCTACTCAGTCGATACGAATT 59.014 38.462 0.00 0.00 33.48 2.17
1457 3057 4.875536 CCTTGATCACACGATGGACAATTA 59.124 41.667 0.00 0.00 29.66 1.40
1612 3225 4.041740 TGGTGAGTATTCGGATTTCTCG 57.958 45.455 4.78 0.00 0.00 4.04
1988 3604 4.455606 AGAAAAAGAGAGACCTTGTGTGG 58.544 43.478 0.00 0.00 0.00 4.17
2081 3697 2.091541 CAACCCACATAAATCTGCCGT 58.908 47.619 0.00 0.00 0.00 5.68
2266 3893 6.128956 GCGCAAATAAATGTAAGACTTTTGCA 60.129 34.615 0.30 4.28 44.57 4.08
2290 3918 1.135489 TGTTAGAGTCATGTCGACCGC 60.135 52.381 14.12 0.00 46.69 5.68
2633 4302 0.988832 TTCACCACCGCTATTCCCTT 59.011 50.000 0.00 0.00 0.00 3.95
2682 4354 1.439228 CCGGATCGCTCACAGTCAT 59.561 57.895 0.00 0.00 0.00 3.06
2752 4424 5.108517 CAATTGCTTCTCTCTCCTCTACAC 58.891 45.833 0.00 0.00 0.00 2.90
2811 4486 4.592997 AAGAAGTGGGCCTTAAGCTAAT 57.407 40.909 4.53 0.00 43.05 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.