Multiple sequence alignment - TraesCS6D01G312000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G312000 chr6D 100.000 7058 0 0 1 7058 421560824 421553767 0.000000e+00 13034.0
1 TraesCS6D01G312000 chr6D 80.169 237 42 4 6673 6909 304688581 304688812 9.410000e-39 172.0
2 TraesCS6D01G312000 chr6A 92.288 2788 127 18 1312 4052 564389975 564392721 0.000000e+00 3877.0
3 TraesCS6D01G312000 chr6A 93.128 1426 72 13 4095 5504 564393083 564394498 0.000000e+00 2067.0
4 TraesCS6D01G312000 chr6A 87.668 1484 103 34 5604 7058 564394566 564395998 0.000000e+00 1653.0
5 TraesCS6D01G312000 chr6A 85.714 266 16 12 332 597 564381321 564381564 1.950000e-65 261.0
6 TraesCS6D01G312000 chr6A 91.765 170 10 2 1086 1251 564389788 564389957 4.260000e-57 233.0
7 TraesCS6D01G312000 chr6A 85.475 179 16 6 102 275 564381138 564381311 2.020000e-40 178.0
8 TraesCS6D01G312000 chr6A 89.412 85 1 2 873 957 564381757 564381833 4.500000e-17 100.0
9 TraesCS6D01G312000 chr6A 100.000 47 0 0 1004 1050 564389745 564389791 3.510000e-13 87.9
10 TraesCS6D01G312000 chr6B 92.094 1948 84 23 950 2848 634611346 634613272 0.000000e+00 2680.0
11 TraesCS6D01G312000 chr6B 90.364 1484 86 29 4055 5504 634614587 634616047 0.000000e+00 1895.0
12 TraesCS6D01G312000 chr6B 90.811 1208 87 12 2848 4052 634613361 634614547 0.000000e+00 1594.0
13 TraesCS6D01G312000 chr6B 87.273 935 71 19 6155 7058 634616738 634617655 0.000000e+00 1024.0
14 TraesCS6D01G312000 chr6B 83.234 1002 74 43 8 957 634610348 634611307 0.000000e+00 833.0
15 TraesCS6D01G312000 chr6B 90.991 333 24 3 5839 6170 634616380 634616707 1.810000e-120 444.0
16 TraesCS6D01G312000 chr6B 87.383 214 26 1 5600 5813 634616170 634616382 1.970000e-60 244.0
17 TraesCS6D01G312000 chr6B 74.936 391 90 8 6673 7058 689517619 689518006 9.410000e-39 172.0
18 TraesCS6D01G312000 chr6B 92.683 82 6 0 1 82 634606913 634606994 1.240000e-22 119.0
19 TraesCS6D01G312000 chr5D 76.042 384 86 4 6673 7051 441401925 441401543 2.010000e-45 195.0
20 TraesCS6D01G312000 chr5D 75.000 452 92 14 6622 7058 407783587 407783142 9.350000e-44 189.0
21 TraesCS6D01G312000 chr5D 73.657 391 94 7 6674 7058 521086385 521086772 7.380000e-30 143.0
22 TraesCS6D01G312000 chr2D 79.435 248 49 2 6673 6920 19634190 19634435 2.620000e-39 174.0
23 TraesCS6D01G312000 chr3D 74.623 398 85 11 6622 7007 561491045 561491438 2.040000e-35 161.0
24 TraesCS6D01G312000 chr7B 76.471 289 66 2 6704 6992 682885393 682885107 9.480000e-34 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G312000 chr6D 421553767 421560824 7057 True 13034.000 13034 100.000000 1 7058 1 chr6D.!!$R1 7057
1 TraesCS6D01G312000 chr6A 564389745 564395998 6253 False 1583.580 3877 92.969800 1004 7058 5 chr6A.!!$F2 6054
2 TraesCS6D01G312000 chr6B 634606913 634617655 10742 False 1104.125 2680 89.354125 1 7058 8 chr6B.!!$F2 7057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 3574 0.319405 CCACGTTTCCCTAGACCGTT 59.681 55.000 0.00 0.0 29.82 4.44 F
1406 4938 0.179062 AGATCCAATCCAGAGCACGC 60.179 55.000 0.00 0.0 0.00 5.34 F
1471 5003 0.667184 GTCGAAACCCTCCGCGTAAA 60.667 55.000 4.92 0.0 0.00 2.01 F
2009 5600 1.337071 TGTCGAGTGAAGTGGAGTGAC 59.663 52.381 0.00 0.0 0.00 3.67 F
3652 7334 0.583438 CACGAAGGCACACACAGAAG 59.417 55.000 0.00 0.0 0.00 2.85 F
3730 7412 0.108233 CAGAGCTCCCAGCAAGAGTC 60.108 60.000 10.93 0.0 45.56 3.36 F
3740 7422 0.617413 AGCAAGAGTCCCACAGATGG 59.383 55.000 0.00 0.0 46.81 3.51 F
4646 8655 1.001181 ACACAATCAGCCATGTTTGCC 59.999 47.619 0.00 0.0 38.96 4.52 F
5817 9979 1.063174 GCGTGGTCTGATGAATGAAGC 59.937 52.381 0.00 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1823 5411 0.476338 TGTGAAAGGGGTTAGCTGCA 59.524 50.000 1.02 0.00 0.00 4.41 R
2741 6332 0.385974 GTGTTTCTGTCCACGCATGC 60.386 55.000 7.91 7.91 0.00 4.06 R
3321 7003 1.379576 GCTGGAGCAGGAATGCCTT 60.380 57.895 0.00 0.00 43.90 4.35 R
3687 7369 0.036010 CGGGATGGGCCATATGAGAC 60.036 60.000 21.26 5.46 38.95 3.36 R
4783 8792 1.021390 ACTGTAGTGCGCATGCCTTC 61.021 55.000 15.91 4.63 41.78 3.46 R
5398 9435 1.376086 CCACATCAGTCAGCACCCA 59.624 57.895 0.00 0.00 0.00 4.51 R
5735 9869 1.163420 ACGGCGAACATTTGCAGTCA 61.163 50.000 16.62 0.00 41.18 3.41 R
5819 9981 0.596577 TTTCTGACACTCCGGTCGAG 59.403 55.000 0.00 0.00 44.95 4.04 R
6984 11236 1.009389 GGCGTGTTGAGAGTCTTCGG 61.009 60.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 3476 4.065281 ACTGCTACGTGACCCCGC 62.065 66.667 0.00 0.00 0.00 6.13
63 3492 3.060000 GCCCGGCCTTAAAAGCGT 61.060 61.111 0.00 0.00 0.00 5.07
101 3530 2.482374 GCTGTTCATGCCACTCGC 59.518 61.111 0.00 0.00 38.31 5.03
102 3531 2.780643 CTGTTCATGCCACTCGCG 59.219 61.111 0.00 0.00 42.08 5.87
103 3532 3.372676 CTGTTCATGCCACTCGCGC 62.373 63.158 0.00 0.00 42.08 6.86
104 3533 3.422303 GTTCATGCCACTCGCGCA 61.422 61.111 8.75 0.00 42.08 6.09
105 3534 2.667874 TTCATGCCACTCGCGCAA 60.668 55.556 8.75 0.00 40.22 4.85
130 3559 2.633657 GAGCGCCATAATGCCACG 59.366 61.111 2.29 0.00 0.00 4.94
145 3574 0.319405 CCACGTTTCCCTAGACCGTT 59.681 55.000 0.00 0.00 29.82 4.44
147 3576 2.029110 CCACGTTTCCCTAGACCGTTAA 60.029 50.000 0.00 0.00 29.82 2.01
148 3577 3.368739 CCACGTTTCCCTAGACCGTTAAT 60.369 47.826 0.00 0.00 29.82 1.40
149 3578 4.248058 CACGTTTCCCTAGACCGTTAATT 58.752 43.478 0.00 0.00 29.82 1.40
150 3579 5.410067 CACGTTTCCCTAGACCGTTAATTA 58.590 41.667 0.00 0.00 29.82 1.40
151 3580 5.517770 CACGTTTCCCTAGACCGTTAATTAG 59.482 44.000 0.00 0.00 29.82 1.73
168 3597 8.932791 CGTTAATTAGTTTAACCTGACATCTGT 58.067 33.333 0.00 0.00 44.54 3.41
201 3630 2.031682 GTGCCAATTATAGGAGCAAGCG 60.032 50.000 0.00 0.00 34.79 4.68
211 3640 1.137614 GAGCAAGCGGGCTAAAAGC 59.862 57.895 5.11 0.00 45.99 3.51
219 3648 1.069091 GCGGGCTAAAAGCGTTGTTAA 60.069 47.619 0.00 0.00 43.62 2.01
220 3649 2.414957 GCGGGCTAAAAGCGTTGTTAAT 60.415 45.455 0.00 0.00 43.62 1.40
221 3650 3.828786 CGGGCTAAAAGCGTTGTTAATT 58.171 40.909 0.00 0.00 43.62 1.40
222 3651 4.672283 GCGGGCTAAAAGCGTTGTTAATTA 60.672 41.667 0.00 0.00 43.62 1.40
223 3652 4.789629 CGGGCTAAAAGCGTTGTTAATTAC 59.210 41.667 0.00 0.00 43.62 1.89
224 3653 5.097529 GGGCTAAAAGCGTTGTTAATTACC 58.902 41.667 0.00 0.00 43.62 2.85
226 3655 5.798434 GGCTAAAAGCGTTGTTAATTACCTG 59.202 40.000 0.00 0.00 43.62 4.00
229 3658 5.366829 AAAGCGTTGTTAATTACCTGGAC 57.633 39.130 0.00 0.00 0.00 4.02
243 3672 2.171448 ACCTGGACCAGACATGCTAATC 59.829 50.000 23.77 0.00 32.44 1.75
244 3673 2.437281 CCTGGACCAGACATGCTAATCT 59.563 50.000 23.77 0.00 32.44 2.40
252 3681 5.070580 ACCAGACATGCTAATCTAACCCTAC 59.929 44.000 0.00 0.00 0.00 3.18
253 3682 5.305644 CCAGACATGCTAATCTAACCCTACT 59.694 44.000 0.00 0.00 0.00 2.57
255 3684 5.305644 AGACATGCTAATCTAACCCTACTGG 59.694 44.000 0.00 0.00 41.37 4.00
305 3734 3.257935 ACGAGAGTGGAGAGAGTGG 57.742 57.895 0.00 0.00 46.97 4.00
307 3736 0.322997 CGAGAGTGGAGAGAGTGGGT 60.323 60.000 0.00 0.00 0.00 4.51
308 3737 1.888826 CGAGAGTGGAGAGAGTGGGTT 60.889 57.143 0.00 0.00 0.00 4.11
310 3739 3.432378 GAGAGTGGAGAGAGTGGGTTTA 58.568 50.000 0.00 0.00 0.00 2.01
311 3740 3.436243 AGAGTGGAGAGAGTGGGTTTAG 58.564 50.000 0.00 0.00 0.00 1.85
313 3742 1.066071 GTGGAGAGAGTGGGTTTAGGC 60.066 57.143 0.00 0.00 0.00 3.93
314 3743 1.276622 GGAGAGAGTGGGTTTAGGCA 58.723 55.000 0.00 0.00 0.00 4.75
454 3898 4.812476 TCGCCTCGATGCCAACGG 62.812 66.667 7.12 0.00 0.00 4.44
455 3899 4.812476 CGCCTCGATGCCAACGGA 62.812 66.667 7.12 0.00 0.00 4.69
459 3903 1.361668 CCTCGATGCCAACGGAACAG 61.362 60.000 0.00 0.00 0.00 3.16
464 3908 1.518056 ATGCCAACGGAACAGCAGTG 61.518 55.000 0.00 0.00 38.89 3.66
477 3921 3.000727 ACAGCAGTGTAGTTTTATCGCC 58.999 45.455 0.00 0.00 34.05 5.54
526 3978 4.903010 GTGCCGTGTCCCGTGTGT 62.903 66.667 0.00 0.00 33.66 3.72
636 4110 4.708421 TGGGTGTACTAGTATGAACAGTCC 59.292 45.833 5.75 7.24 0.00 3.85
639 4113 6.127140 GGGTGTACTAGTATGAACAGTCCATT 60.127 42.308 5.75 0.00 0.00 3.16
640 4114 6.979238 GGTGTACTAGTATGAACAGTCCATTC 59.021 42.308 5.75 0.00 0.00 2.67
717 4191 2.601666 AGGGCTCACGCTGACAGA 60.602 61.111 6.65 0.00 37.75 3.41
719 4193 2.125753 GGCTCACGCTGACAGAGG 60.126 66.667 6.65 0.00 36.09 3.69
720 4194 2.813042 GCTCACGCTGACAGAGGC 60.813 66.667 6.65 0.00 0.00 4.70
721 4195 2.653115 CTCACGCTGACAGAGGCA 59.347 61.111 6.65 0.00 0.00 4.75
836 4314 3.055110 TCGCGCCGGTGTGTAGTA 61.055 61.111 26.63 6.00 0.00 1.82
837 4315 2.578713 CGCGCCGGTGTGTAGTAG 60.579 66.667 20.42 0.00 0.00 2.57
838 4316 2.570181 GCGCCGGTGTGTAGTAGT 59.430 61.111 17.91 0.00 0.00 2.73
839 4317 1.802636 GCGCCGGTGTGTAGTAGTA 59.197 57.895 17.91 0.00 0.00 1.82
840 4318 0.524180 GCGCCGGTGTGTAGTAGTAC 60.524 60.000 17.91 0.37 0.00 2.73
841 4319 1.089920 CGCCGGTGTGTAGTAGTACT 58.910 55.000 6.91 8.14 0.00 2.73
842 4320 1.202110 CGCCGGTGTGTAGTAGTACTG 60.202 57.143 13.29 0.00 0.00 2.74
843 4321 1.815003 GCCGGTGTGTAGTAGTACTGT 59.185 52.381 13.29 0.00 0.00 3.55
844 4322 2.415090 GCCGGTGTGTAGTAGTACTGTG 60.415 54.545 13.29 0.00 0.00 3.66
845 4323 2.816087 CCGGTGTGTAGTAGTACTGTGT 59.184 50.000 13.29 0.00 0.00 3.72
846 4324 3.120060 CCGGTGTGTAGTAGTACTGTGTC 60.120 52.174 13.29 2.09 0.00 3.67
847 4325 3.424039 CGGTGTGTAGTAGTACTGTGTCG 60.424 52.174 13.29 5.80 0.00 4.35
848 4326 3.486584 GTGTGTAGTAGTACTGTGTCGC 58.513 50.000 13.29 7.83 0.00 5.19
972 4496 2.619646 GGCCCGAGAACAAAAGTACAAA 59.380 45.455 0.00 0.00 0.00 2.83
996 4520 1.003118 CACCGAGGAAGGAATGTGGAA 59.997 52.381 0.00 0.00 34.73 3.53
998 4522 1.279271 CCGAGGAAGGAATGTGGAAGT 59.721 52.381 0.00 0.00 0.00 3.01
1065 4593 4.214327 GCGGAGAGAGGGAAGCCG 62.214 72.222 0.00 0.00 44.47 5.52
1136 4665 3.833645 CGTCCTCGGGGAATGCGA 61.834 66.667 5.00 0.00 44.15 5.10
1406 4938 0.179062 AGATCCAATCCAGAGCACGC 60.179 55.000 0.00 0.00 0.00 5.34
1471 5003 0.667184 GTCGAAACCCTCCGCGTAAA 60.667 55.000 4.92 0.00 0.00 2.01
1535 5090 2.724349 GCTTTTCTATCATTGCTGGCG 58.276 47.619 0.00 0.00 0.00 5.69
1659 5229 2.142357 GACGCTCCCTTTGTTTGGCC 62.142 60.000 0.00 0.00 0.00 5.36
1823 5411 4.742649 TCTCCTCCTGCCGTCGCT 62.743 66.667 0.00 0.00 35.36 4.93
1954 5545 3.557595 CACTCGCTGAAAGGTAATCCATC 59.442 47.826 0.00 0.00 35.89 3.51
1962 5553 2.843909 AGGTAATCCATCCCCCTCAT 57.156 50.000 0.00 0.00 35.89 2.90
1963 5554 3.095299 AGGTAATCCATCCCCCTCATT 57.905 47.619 0.00 0.00 35.89 2.57
2009 5600 1.337071 TGTCGAGTGAAGTGGAGTGAC 59.663 52.381 0.00 0.00 0.00 3.67
2147 5738 2.202676 CTGCTCGTTCTCTCGCCC 60.203 66.667 0.00 0.00 0.00 6.13
2262 5853 1.677633 AACTACCACCGGCATTGCC 60.678 57.895 18.10 18.10 46.75 4.52
2426 6017 2.764128 TGGATCCTGAGCCCGGTC 60.764 66.667 14.23 0.00 35.64 4.79
2576 6167 1.648467 GCTTCGATGGTGTTCTGGCC 61.648 60.000 0.00 0.00 0.00 5.36
2714 6305 1.676529 TCGTATTCGGCTGAGAAGGAG 59.323 52.381 0.00 0.00 37.69 3.69
2741 6332 6.587990 CCTATATTTGGAGATCAGCAAGTACG 59.412 42.308 0.00 0.00 0.00 3.67
2821 6412 2.481952 CTGCACAAGGTTTGAGCTAGTC 59.518 50.000 11.40 0.00 45.66 2.59
2908 6588 5.975693 TCTACATTTCAACCCCACAATTC 57.024 39.130 0.00 0.00 0.00 2.17
3028 6708 2.094675 CCTGTTATTTGCCCCTGACAG 58.905 52.381 0.00 0.00 35.48 3.51
3219 6901 5.489792 ACACAGATGATGTCTTACAAGGT 57.510 39.130 0.00 0.00 41.41 3.50
3221 6903 4.872691 CACAGATGATGTCTTACAAGGTCC 59.127 45.833 0.00 0.00 41.41 4.46
3225 6907 4.271696 TGATGTCTTACAAGGTCCACAG 57.728 45.455 0.00 0.00 0.00 3.66
3321 7003 1.281419 TATCGTCCTCCCCAAAAGCA 58.719 50.000 0.00 0.00 0.00 3.91
3432 7114 7.432545 CAGGTAGATGATCAAGTAACTGTTACG 59.567 40.741 21.27 11.01 41.01 3.18
3513 7195 5.780282 TGAATGGAGGAAGAAGACTACAGAA 59.220 40.000 0.00 0.00 29.62 3.02
3522 7204 2.606519 ACTACAGAAGCCCGGGCA 60.607 61.111 45.13 24.22 44.88 5.36
3595 7277 5.731599 TGTTTCATGTTTGCCATTTTGTC 57.268 34.783 0.00 0.00 0.00 3.18
3599 7281 4.793071 TCATGTTTGCCATTTTGTCTACG 58.207 39.130 0.00 0.00 0.00 3.51
3603 7285 4.219033 GTTTGCCATTTTGTCTACGAGTG 58.781 43.478 0.00 0.00 0.00 3.51
3613 7295 7.548196 TTTTGTCTACGAGTGAACTGATTTT 57.452 32.000 0.00 0.00 0.00 1.82
3614 7296 8.651391 TTTTGTCTACGAGTGAACTGATTTTA 57.349 30.769 0.00 0.00 0.00 1.52
3615 7297 7.869016 TTGTCTACGAGTGAACTGATTTTAG 57.131 36.000 0.00 0.00 0.00 1.85
3616 7298 5.862323 TGTCTACGAGTGAACTGATTTTAGC 59.138 40.000 0.00 0.00 0.00 3.09
3617 7299 5.862323 GTCTACGAGTGAACTGATTTTAGCA 59.138 40.000 0.00 0.00 0.00 3.49
3618 7300 4.992381 ACGAGTGAACTGATTTTAGCAC 57.008 40.909 0.00 0.00 0.00 4.40
3619 7301 4.632153 ACGAGTGAACTGATTTTAGCACT 58.368 39.130 0.00 0.00 39.10 4.40
3620 7302 5.779922 ACGAGTGAACTGATTTTAGCACTA 58.220 37.500 0.00 0.00 36.79 2.74
3621 7303 5.634020 ACGAGTGAACTGATTTTAGCACTAC 59.366 40.000 0.00 0.00 36.79 2.73
3622 7304 5.864474 CGAGTGAACTGATTTTAGCACTACT 59.136 40.000 0.00 0.00 36.79 2.57
3623 7305 6.183360 CGAGTGAACTGATTTTAGCACTACTG 60.183 42.308 0.00 0.00 36.79 2.74
3624 7306 5.409826 AGTGAACTGATTTTAGCACTACTGC 59.590 40.000 0.00 0.00 44.63 4.40
3625 7307 4.695455 TGAACTGATTTTAGCACTACTGCC 59.305 41.667 0.00 0.00 45.53 4.85
3626 7308 4.286297 ACTGATTTTAGCACTACTGCCA 57.714 40.909 0.00 0.00 45.53 4.92
3631 7313 5.586243 TGATTTTAGCACTACTGCCAGATTC 59.414 40.000 0.00 0.00 45.53 2.52
3643 7325 1.421485 CAGATTCGCACGAAGGCAC 59.579 57.895 11.48 3.44 37.56 5.01
3644 7326 1.005037 AGATTCGCACGAAGGCACA 60.005 52.632 11.48 0.00 37.56 4.57
3651 7333 1.436195 GCACGAAGGCACACACAGAA 61.436 55.000 0.00 0.00 0.00 3.02
3652 7334 0.583438 CACGAAGGCACACACAGAAG 59.417 55.000 0.00 0.00 0.00 2.85
3674 7356 4.284490 AGAGAGAGTGCTTTCATTGTGGTA 59.716 41.667 0.00 0.00 0.00 3.25
3680 7362 8.668510 AGAGTGCTTTCATTGTGGTATTATAG 57.331 34.615 0.00 0.00 0.00 1.31
3688 7370 9.899661 TTTCATTGTGGTATTATAGCTGTTAGT 57.100 29.630 0.00 0.00 0.00 2.24
3691 7373 9.197694 CATTGTGGTATTATAGCTGTTAGTCTC 57.802 37.037 0.00 0.00 0.00 3.36
3705 7387 1.366319 AGTCTCATATGGCCCATCCC 58.634 55.000 0.00 0.00 0.00 3.85
3716 7398 2.202987 CCATCCCGCTGTCAGAGC 60.203 66.667 3.32 0.00 45.20 4.09
3730 7412 0.108233 CAGAGCTCCCAGCAAGAGTC 60.108 60.000 10.93 0.00 45.56 3.36
3740 7422 0.617413 AGCAAGAGTCCCACAGATGG 59.383 55.000 0.00 0.00 46.81 3.51
3767 7449 6.634805 TGCTTTTCTGGAAATGTTTGTTGTA 58.365 32.000 9.56 0.00 0.00 2.41
3768 7450 7.271511 TGCTTTTCTGGAAATGTTTGTTGTAT 58.728 30.769 9.56 0.00 0.00 2.29
3793 7475 4.762289 ATGAAAGGGTCATCCTACAGTC 57.238 45.455 0.00 0.00 44.01 3.51
3798 7480 1.913419 GGGTCATCCTACAGTCCCAAA 59.087 52.381 0.00 0.00 35.43 3.28
3829 7511 3.679917 GCTGTATGCCTGACAGTGTACAT 60.680 47.826 0.00 0.82 45.09 2.29
3848 7530 7.829211 GTGTACATAATGCATATGGGTAGGAAT 59.171 37.037 0.00 0.00 44.82 3.01
3885 7567 1.508808 GGTAGCCGTTGCAAACCGAA 61.509 55.000 10.71 0.00 46.28 4.30
3895 7577 5.333339 CCGTTGCAAACCGAATATAGATCTG 60.333 44.000 10.71 0.00 46.28 2.90
3899 7581 4.153117 GCAAACCGAATATAGATCTGGCTG 59.847 45.833 5.18 0.00 0.00 4.85
3911 7593 1.822613 CTGGCTGCTATGTGGCCTG 60.823 63.158 3.32 0.00 45.45 4.85
3925 7607 1.345741 TGGCCTGCTGATATGCTACTC 59.654 52.381 3.32 0.00 0.00 2.59
3926 7608 1.345741 GGCCTGCTGATATGCTACTCA 59.654 52.381 0.00 0.00 0.00 3.41
3944 7626 5.745312 ACTCATGACATGTTCTTAGTGGA 57.255 39.130 14.98 0.00 0.00 4.02
3988 7670 5.715070 CAGTTAACTGTGGGTTTGACAAAA 58.285 37.500 24.70 0.00 39.09 2.44
4010 7692 7.571080 AAATTCCACAATTTGAAGTTGCAAT 57.429 28.000 0.59 0.00 40.16 3.56
4023 7705 5.068987 TGAAGTTGCAATTTTAGCTGGAGTT 59.931 36.000 8.72 0.00 0.00 3.01
4024 7706 4.874970 AGTTGCAATTTTAGCTGGAGTTG 58.125 39.130 0.59 0.00 0.00 3.16
4038 7720 3.156293 TGGAGTTGCATGCAAATACTGT 58.844 40.909 35.21 17.38 36.01 3.55
4052 7736 6.207221 TGCAAATACTGTGACTGAAATGACAT 59.793 34.615 0.00 0.00 0.00 3.06
4053 7737 6.525628 GCAAATACTGTGACTGAAATGACATG 59.474 38.462 0.00 0.00 0.00 3.21
4070 7789 2.035066 ACATGTTCTTCAGCAAACTGGC 59.965 45.455 0.00 0.00 44.59 4.85
4074 7793 1.761449 TCTTCAGCAAACTGGCACAA 58.239 45.000 0.00 0.00 44.59 3.33
4079 7798 2.629137 TCAGCAAACTGGCACAAATCAT 59.371 40.909 0.00 0.00 44.59 2.45
4119 8122 3.554324 GCGCTCGAAGGTGTTTTATGATA 59.446 43.478 0.00 0.00 0.00 2.15
4149 8153 7.272144 AGATCACTTATTACAGGTTCCCTTT 57.728 36.000 0.00 0.00 0.00 3.11
4171 8175 5.853572 TTGGTAAGTAAATTCCAGAGGGT 57.146 39.130 0.00 0.00 34.93 4.34
4210 8214 6.897966 AGTAGGAGGACATAGATTGTGAAAGA 59.102 38.462 0.00 0.00 39.18 2.52
4211 8215 5.983540 AGGAGGACATAGATTGTGAAAGAC 58.016 41.667 0.00 0.00 39.18 3.01
4213 8217 6.214412 AGGAGGACATAGATTGTGAAAGACTT 59.786 38.462 0.00 0.00 39.18 3.01
4252 8256 4.445735 AAGGTACTCTAGCAACTGGCAAAA 60.446 41.667 0.00 0.00 42.70 2.44
4318 8322 5.152623 TGGACTAGATATGTGCTTATGGC 57.847 43.478 0.00 0.00 42.22 4.40
4343 8347 7.041780 GCGTGTGAATCTTGGATTTCTATGTAT 60.042 37.037 0.00 0.00 0.00 2.29
4391 8397 5.753921 AGTTGTTTGCTACAGTCTAAGTGAC 59.246 40.000 0.00 0.00 45.67 3.67
4434 8442 8.341892 TGTACACAAGATAATAATGTTTGCCA 57.658 30.769 0.00 0.00 0.00 4.92
4451 8459 3.808728 TGCCATCCTCAGTTACTATTGC 58.191 45.455 0.00 0.00 0.00 3.56
4462 8470 9.378551 CCTCAGTTACTATTGCACATTAACTTA 57.621 33.333 7.26 1.74 31.98 2.24
4512 8521 9.769677 ATATATCCTGTTGCTGATACCTAGTAA 57.230 33.333 0.00 0.00 0.00 2.24
4515 8524 7.195374 TCCTGTTGCTGATACCTAGTAATTT 57.805 36.000 0.00 0.00 0.00 1.82
4646 8655 1.001181 ACACAATCAGCCATGTTTGCC 59.999 47.619 0.00 0.00 38.96 4.52
4678 8687 5.567138 ATGTTTCTATGCTTTGGCTACAC 57.433 39.130 0.00 0.00 39.59 2.90
4809 8818 1.217001 TGCGCACTACAGTTTCTGTG 58.783 50.000 5.66 5.54 45.01 3.66
5029 9038 8.718102 ATCTCTGTTAAACGCATACATACTTT 57.282 30.769 0.00 0.00 0.00 2.66
5134 9144 5.469760 CCAAACTGGAATTTTCAATTGGACC 59.530 40.000 13.24 0.00 40.96 4.46
5206 9216 5.827797 TGGCTAGCCCTATTTTGATAACAAG 59.172 40.000 30.81 0.00 34.71 3.16
5273 9283 5.051441 GCTTTGCTTTTTGAACTAGACTTGC 60.051 40.000 0.00 0.00 0.00 4.01
5292 9312 2.171237 TGCATATCTGACAGACCCTTGG 59.829 50.000 7.47 0.00 0.00 3.61
5319 9346 2.237392 GGCTGAGTGTAGATTTGGTCCT 59.763 50.000 0.00 0.00 0.00 3.85
5320 9347 3.265791 GCTGAGTGTAGATTTGGTCCTG 58.734 50.000 0.00 0.00 0.00 3.86
5331 9358 6.441088 AGATTTGGTCCTGACTCTTAAACT 57.559 37.500 0.00 0.00 0.00 2.66
5332 9359 6.842676 AGATTTGGTCCTGACTCTTAAACTT 58.157 36.000 0.00 0.00 0.00 2.66
5363 9400 5.749596 TCCAATGCTTAATTCCATGTACG 57.250 39.130 0.00 0.00 0.00 3.67
5398 9435 4.524328 GGAGTGATTTTGATGGTTCCAGTT 59.476 41.667 0.00 0.00 0.00 3.16
5399 9436 5.458041 AGTGATTTTGATGGTTCCAGTTG 57.542 39.130 0.00 0.00 0.00 3.16
5426 9463 4.449131 CTGACTGATGTGGCATCTATGTT 58.551 43.478 10.02 0.00 0.00 2.71
5449 9486 1.803334 TGCGACATAACCAGTTCACC 58.197 50.000 0.00 0.00 0.00 4.02
5480 9517 1.134965 TGCCACGTTTGAAAAACAGGG 60.135 47.619 11.18 8.57 0.00 4.45
5521 9561 9.636789 ATTTAAAAACTACTCCCACTGTAAACT 57.363 29.630 0.00 0.00 0.00 2.66
5525 9565 8.617290 AAAACTACTCCCACTGTAAACTAATG 57.383 34.615 0.00 0.00 0.00 1.90
5526 9566 5.731591 ACTACTCCCACTGTAAACTAATGC 58.268 41.667 0.00 0.00 0.00 3.56
5527 9567 4.634012 ACTCCCACTGTAAACTAATGCA 57.366 40.909 0.00 0.00 0.00 3.96
5528 9568 4.980573 ACTCCCACTGTAAACTAATGCAA 58.019 39.130 0.00 0.00 0.00 4.08
5529 9569 5.003804 ACTCCCACTGTAAACTAATGCAAG 58.996 41.667 0.00 0.00 0.00 4.01
5530 9570 5.221843 ACTCCCACTGTAAACTAATGCAAGA 60.222 40.000 0.00 0.00 0.00 3.02
5531 9571 5.815581 TCCCACTGTAAACTAATGCAAGAT 58.184 37.500 0.00 0.00 0.00 2.40
5532 9572 5.647658 TCCCACTGTAAACTAATGCAAGATG 59.352 40.000 0.00 0.00 0.00 2.90
5533 9573 5.415701 CCCACTGTAAACTAATGCAAGATGT 59.584 40.000 0.00 0.00 0.00 3.06
5534 9574 6.071952 CCCACTGTAAACTAATGCAAGATGTT 60.072 38.462 0.00 0.00 0.00 2.71
5535 9575 7.370383 CCACTGTAAACTAATGCAAGATGTTT 58.630 34.615 12.58 12.58 35.43 2.83
5536 9576 7.867403 CCACTGTAAACTAATGCAAGATGTTTT 59.133 33.333 13.00 2.53 33.63 2.43
5537 9577 9.248291 CACTGTAAACTAATGCAAGATGTTTTT 57.752 29.630 13.00 1.27 33.63 1.94
5557 9597 6.660887 TTTTTCAGAACTGCAAAAATGTCC 57.339 33.333 9.17 0.00 33.95 4.02
5558 9598 5.596836 TTTCAGAACTGCAAAAATGTCCT 57.403 34.783 0.00 0.00 0.00 3.85
5559 9599 6.707440 TTTCAGAACTGCAAAAATGTCCTA 57.293 33.333 0.00 0.00 0.00 2.94
5560 9600 6.707440 TTCAGAACTGCAAAAATGTCCTAA 57.293 33.333 0.00 0.00 0.00 2.69
5561 9601 6.707440 TCAGAACTGCAAAAATGTCCTAAA 57.293 33.333 0.00 0.00 0.00 1.85
5562 9602 7.288810 TCAGAACTGCAAAAATGTCCTAAAT 57.711 32.000 0.00 0.00 0.00 1.40
5563 9603 7.725251 TCAGAACTGCAAAAATGTCCTAAATT 58.275 30.769 0.00 0.00 0.00 1.82
5564 9604 8.203485 TCAGAACTGCAAAAATGTCCTAAATTT 58.797 29.630 0.00 0.00 0.00 1.82
5565 9605 9.474920 CAGAACTGCAAAAATGTCCTAAATTTA 57.525 29.630 0.00 0.00 0.00 1.40
5566 9606 9.696917 AGAACTGCAAAAATGTCCTAAATTTAG 57.303 29.630 16.90 16.90 0.00 1.85
5567 9607 9.691362 GAACTGCAAAAATGTCCTAAATTTAGA 57.309 29.630 23.95 7.11 32.47 2.10
5571 9611 9.823647 TGCAAAAATGTCCTAAATTTAGAAACA 57.176 25.926 23.95 23.87 33.72 2.83
5601 9735 8.292448 GTCCATATTATAGTTTGAGTGCCAATG 58.708 37.037 0.00 0.00 34.23 2.82
5652 9786 3.754188 GCAAACAGCCTTGTAGAGATG 57.246 47.619 0.00 0.00 36.23 2.90
5688 9822 1.718396 ACTGACATCACTCATGCGTG 58.282 50.000 9.60 9.60 35.65 5.34
5720 9854 1.739562 CAGCTCAAGTCAGCCGACC 60.740 63.158 0.00 0.00 43.73 4.79
5748 9882 3.130340 ACCGAAGTTTGACTGCAAATGTT 59.870 39.130 0.00 0.00 45.01 2.71
5800 9934 2.829741 AGAAGAAGAGAGCTTTGCGT 57.170 45.000 0.00 0.00 33.61 5.24
5813 9975 2.730090 GCTTTGCGTGGTCTGATGAATG 60.730 50.000 0.00 0.00 0.00 2.67
5816 9978 2.349590 TGCGTGGTCTGATGAATGAAG 58.650 47.619 0.00 0.00 0.00 3.02
5817 9979 1.063174 GCGTGGTCTGATGAATGAAGC 59.937 52.381 0.00 0.00 0.00 3.86
5818 9980 2.349590 CGTGGTCTGATGAATGAAGCA 58.650 47.619 0.00 0.00 0.00 3.91
5819 9981 2.094894 CGTGGTCTGATGAATGAAGCAC 59.905 50.000 0.00 0.00 35.57 4.40
5820 9982 3.341823 GTGGTCTGATGAATGAAGCACT 58.658 45.455 0.00 0.00 35.91 4.40
5821 9983 3.373439 GTGGTCTGATGAATGAAGCACTC 59.627 47.826 0.00 0.00 35.91 3.51
5822 9984 2.606725 GGTCTGATGAATGAAGCACTCG 59.393 50.000 0.00 0.00 0.00 4.18
5823 9985 3.515630 GTCTGATGAATGAAGCACTCGA 58.484 45.455 0.00 0.00 0.00 4.04
5824 9986 3.305629 GTCTGATGAATGAAGCACTCGAC 59.694 47.826 0.00 0.00 0.00 4.20
5825 9987 2.606725 CTGATGAATGAAGCACTCGACC 59.393 50.000 0.00 0.00 0.00 4.79
5826 9988 1.590238 GATGAATGAAGCACTCGACCG 59.410 52.381 0.00 0.00 0.00 4.79
5827 9989 0.389817 TGAATGAAGCACTCGACCGG 60.390 55.000 0.00 0.00 0.00 5.28
5828 9990 0.108804 GAATGAAGCACTCGACCGGA 60.109 55.000 9.46 0.00 0.00 5.14
5836 9998 3.982829 CTCGACCGGAGTGTCAGA 58.017 61.111 9.46 0.00 38.02 3.27
5837 9999 2.254471 CTCGACCGGAGTGTCAGAA 58.746 57.895 9.46 0.00 38.02 3.02
5838 10000 0.596577 CTCGACCGGAGTGTCAGAAA 59.403 55.000 9.46 0.00 38.02 2.52
5839 10001 1.000607 CTCGACCGGAGTGTCAGAAAA 60.001 52.381 9.46 0.00 38.02 2.29
5840 10002 1.616865 TCGACCGGAGTGTCAGAAAAT 59.383 47.619 9.46 0.00 34.88 1.82
5841 10003 1.993370 CGACCGGAGTGTCAGAAAATC 59.007 52.381 9.46 0.00 34.88 2.17
5842 10004 1.993370 GACCGGAGTGTCAGAAAATCG 59.007 52.381 9.46 0.00 35.29 3.34
5843 10005 1.616865 ACCGGAGTGTCAGAAAATCGA 59.383 47.619 9.46 0.00 0.00 3.59
5844 10006 2.036733 ACCGGAGTGTCAGAAAATCGAA 59.963 45.455 9.46 0.00 0.00 3.71
5845 10007 2.668457 CCGGAGTGTCAGAAAATCGAAG 59.332 50.000 0.00 0.00 0.00 3.79
5846 10008 2.092838 CGGAGTGTCAGAAAATCGAAGC 59.907 50.000 0.00 0.00 0.00 3.86
5847 10009 3.067106 GGAGTGTCAGAAAATCGAAGCA 58.933 45.455 0.00 0.00 0.00 3.91
5856 10018 3.128242 AGAAAATCGAAGCATTGGAGCAG 59.872 43.478 0.00 0.00 35.91 4.24
5888 10055 7.176515 ACTCTTGTAGCTGATGATATGGAGTAG 59.823 40.741 0.00 0.00 0.00 2.57
5889 10056 5.651387 TGTAGCTGATGATATGGAGTAGC 57.349 43.478 0.00 0.00 0.00 3.58
5978 10145 2.082231 TCTCTAGTTGAACTCCGGACG 58.918 52.381 0.00 0.00 0.00 4.79
5981 10148 0.883833 TAGTTGAACTCCGGACGGAC 59.116 55.000 9.76 0.99 39.76 4.79
5982 10149 0.826672 AGTTGAACTCCGGACGGACT 60.827 55.000 9.76 1.96 39.76 3.85
5983 10150 0.666577 GTTGAACTCCGGACGGACTG 60.667 60.000 9.76 3.87 39.76 3.51
5984 10151 0.824595 TTGAACTCCGGACGGACTGA 60.825 55.000 9.76 0.00 39.76 3.41
5985 10152 0.611062 TGAACTCCGGACGGACTGAT 60.611 55.000 9.76 0.00 39.76 2.90
5986 10153 0.100861 GAACTCCGGACGGACTGATC 59.899 60.000 9.76 2.15 39.76 2.92
5987 10154 1.654954 AACTCCGGACGGACTGATCG 61.655 60.000 9.76 1.59 39.76 3.69
5995 10162 3.782443 GGACTGATCGGGCCGGTT 61.782 66.667 27.98 14.52 0.00 4.44
5999 10166 3.774959 CTGATCGGGCCGGTTCTCG 62.775 68.421 27.98 14.00 38.88 4.04
6081 10248 0.251297 TGGGGCTCCAGTGTCAAATG 60.251 55.000 0.00 0.00 38.32 2.32
6082 10249 1.598701 GGGGCTCCAGTGTCAAATGC 61.599 60.000 0.00 0.00 0.00 3.56
6139 10306 0.451783 GAGGCGCTTTACCACAATGG 59.548 55.000 7.64 0.00 45.02 3.16
6162 10329 1.531602 AAACAAGCTGGAGGTGGGC 60.532 57.895 0.00 0.00 0.00 5.36
6204 10418 3.774702 GCTTTCGACGTGGACGGC 61.775 66.667 0.00 4.01 45.58 5.68
6295 10509 7.520119 AATCAAACAGAAAAACGGAAAGTTC 57.480 32.000 0.00 0.00 43.37 3.01
6296 10510 6.262193 TCAAACAGAAAAACGGAAAGTTCT 57.738 33.333 0.00 0.00 43.37 3.01
6299 10513 4.292977 CAGAAAAACGGAAAGTTCTGCT 57.707 40.909 0.00 0.00 43.37 4.24
6310 10526 2.032528 TTCTGCTGCTCCGGGTTG 59.967 61.111 0.00 0.00 0.00 3.77
6331 10547 0.460811 CCAAGACGCTGCTGCTATGA 60.461 55.000 14.03 0.00 36.97 2.15
6333 10549 0.179089 AAGACGCTGCTGCTATGAGG 60.179 55.000 14.03 0.00 36.97 3.86
6335 10551 2.108566 CGCTGCTGCTATGAGGCT 59.891 61.111 14.03 0.00 36.97 4.58
6374 10611 2.893895 ATCCAGCGCGCAGTCATG 60.894 61.111 35.10 21.85 0.00 3.07
6457 10700 2.604174 CCCGTTTCGTCACACCAGC 61.604 63.158 0.00 0.00 0.00 4.85
6514 10760 4.510711 GCCAGATGATTCAGCATATATCCG 59.489 45.833 4.52 0.00 0.00 4.18
6533 10780 4.978186 TCCGTATCGCTTATCTTTATCCG 58.022 43.478 0.00 0.00 0.00 4.18
6647 10899 6.935741 TTTCTGAGAAAACTTTCGATCCAA 57.064 33.333 4.94 0.00 41.92 3.53
6720 10972 2.482296 AAACCACCTAGCGACGACCG 62.482 60.000 0.00 0.00 42.21 4.79
6832 11084 2.497675 AGTCATCGTGCTAAGACCACAT 59.502 45.455 0.00 0.00 32.85 3.21
6833 11085 3.699538 AGTCATCGTGCTAAGACCACATA 59.300 43.478 0.00 0.00 32.85 2.29
6853 11105 2.422746 AGGGCTAGGGCATTAGAACAT 58.577 47.619 0.00 0.00 40.87 2.71
6888 11140 8.977505 GCTGATGAAGAGAAGTATAGATCAAAC 58.022 37.037 0.00 0.00 0.00 2.93
6927 11179 4.335315 ACACACGAATGAAGACACACAAAT 59.665 37.500 0.00 0.00 0.00 2.32
6960 11212 0.747255 AGATCCACCGGAGACAATCG 59.253 55.000 9.46 0.00 34.05 3.34
7007 11259 0.540830 AGACTCTCAACACGCCCTCT 60.541 55.000 0.00 0.00 0.00 3.69
7032 11284 1.758319 CGTTAAACGCATCGCCGGAT 61.758 55.000 5.05 0.00 33.65 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 3476 2.746803 CGACGCTTTTAAGGCCGGG 61.747 63.158 2.18 0.00 0.00 5.73
84 3513 2.482374 GCGAGTGGCATGAACAGC 59.518 61.111 0.00 0.47 42.87 4.40
85 3514 2.780643 CGCGAGTGGCATGAACAG 59.219 61.111 0.00 0.00 43.84 3.16
86 3515 3.422303 GCGCGAGTGGCATGAACA 61.422 61.111 12.10 0.00 43.84 3.18
87 3516 2.839324 CTTGCGCGAGTGGCATGAAC 62.839 60.000 16.99 0.00 43.84 3.18
88 3517 2.667874 TTGCGCGAGTGGCATGAA 60.668 55.556 12.10 0.00 43.84 2.57
89 3518 3.120385 CTTGCGCGAGTGGCATGA 61.120 61.111 16.99 0.00 43.84 3.07
90 3519 4.170062 CCTTGCGCGAGTGGCATG 62.170 66.667 22.94 2.93 43.84 4.06
94 3523 4.680237 TGTCCCTTGCGCGAGTGG 62.680 66.667 22.94 21.51 0.00 4.00
95 3524 3.414700 GTGTCCCTTGCGCGAGTG 61.415 66.667 22.94 12.58 0.00 3.51
97 3526 4.717629 TCGTGTCCCTTGCGCGAG 62.718 66.667 18.28 18.28 42.74 5.03
98 3527 4.717629 CTCGTGTCCCTTGCGCGA 62.718 66.667 12.10 0.00 44.89 5.87
103 3532 2.572095 TATGGCGCTCGTGTCCCTTG 62.572 60.000 7.64 0.00 0.00 3.61
104 3533 1.895020 TTATGGCGCTCGTGTCCCTT 61.895 55.000 7.64 0.00 0.00 3.95
105 3534 1.686325 ATTATGGCGCTCGTGTCCCT 61.686 55.000 7.64 0.00 0.00 4.20
108 3537 1.276844 GCATTATGGCGCTCGTGTC 59.723 57.895 7.64 0.00 0.00 3.67
117 3546 0.102300 GGGAAACGTGGCATTATGGC 59.898 55.000 12.03 12.03 44.03 4.40
119 3548 3.560068 GTCTAGGGAAACGTGGCATTATG 59.440 47.826 0.00 0.00 0.00 1.90
130 3559 7.912056 AAACTAATTAACGGTCTAGGGAAAC 57.088 36.000 0.00 0.00 0.00 2.78
147 3576 8.100791 TGCTAACAGATGTCAGGTTAAACTAAT 58.899 33.333 0.00 0.00 0.00 1.73
148 3577 7.386848 GTGCTAACAGATGTCAGGTTAAACTAA 59.613 37.037 0.00 0.00 0.00 2.24
149 3578 6.872020 GTGCTAACAGATGTCAGGTTAAACTA 59.128 38.462 0.00 0.00 0.00 2.24
150 3579 5.701290 GTGCTAACAGATGTCAGGTTAAACT 59.299 40.000 0.00 0.00 0.00 2.66
151 3580 5.468746 TGTGCTAACAGATGTCAGGTTAAAC 59.531 40.000 0.00 0.00 0.00 2.01
180 3609 2.031682 CGCTTGCTCCTATAATTGGCAC 60.032 50.000 0.00 0.00 32.47 5.01
184 3613 1.537202 GCCCGCTTGCTCCTATAATTG 59.463 52.381 0.00 0.00 0.00 2.32
190 3619 0.616371 TTTTAGCCCGCTTGCTCCTA 59.384 50.000 0.00 0.00 41.68 2.94
201 3630 5.097529 GGTAATTAACAACGCTTTTAGCCC 58.902 41.667 0.00 0.00 38.18 5.19
211 3640 4.390909 GTCTGGTCCAGGTAATTAACAACG 59.609 45.833 19.11 0.00 31.51 4.10
219 3648 2.200081 AGCATGTCTGGTCCAGGTAAT 58.800 47.619 19.11 7.45 31.51 1.89
220 3649 1.656587 AGCATGTCTGGTCCAGGTAA 58.343 50.000 19.11 5.36 31.51 2.85
221 3650 2.543037 TAGCATGTCTGGTCCAGGTA 57.457 50.000 19.11 8.61 34.31 3.08
222 3651 1.656587 TTAGCATGTCTGGTCCAGGT 58.343 50.000 19.11 1.99 34.31 4.00
223 3652 2.437281 AGATTAGCATGTCTGGTCCAGG 59.563 50.000 19.11 3.79 34.31 4.45
224 3653 3.834489 AGATTAGCATGTCTGGTCCAG 57.166 47.619 13.21 13.21 34.31 3.86
226 3655 4.381411 GGTTAGATTAGCATGTCTGGTCC 58.619 47.826 0.00 0.00 34.31 4.46
229 3658 4.696479 AGGGTTAGATTAGCATGTCTGG 57.304 45.455 0.00 0.00 0.00 3.86
288 3717 0.322997 ACCCACTCTCTCCACTCTCG 60.323 60.000 0.00 0.00 0.00 4.04
290 3719 2.407340 AAACCCACTCTCTCCACTCT 57.593 50.000 0.00 0.00 0.00 3.24
291 3720 2.498078 CCTAAACCCACTCTCTCCACTC 59.502 54.545 0.00 0.00 0.00 3.51
292 3721 2.541466 CCTAAACCCACTCTCTCCACT 58.459 52.381 0.00 0.00 0.00 4.00
294 3723 1.276622 GCCTAAACCCACTCTCTCCA 58.723 55.000 0.00 0.00 0.00 3.86
301 3730 1.136828 TGACTGTGCCTAAACCCACT 58.863 50.000 0.00 0.00 33.26 4.00
303 3732 1.136828 AGTGACTGTGCCTAAACCCA 58.863 50.000 0.00 0.00 0.00 4.51
305 3734 2.543777 TCAGTGACTGTGCCTAAACC 57.456 50.000 12.93 0.00 32.61 3.27
307 3736 4.702612 TGTTTTTCAGTGACTGTGCCTAAA 59.297 37.500 12.93 2.44 32.61 1.85
308 3737 4.265893 TGTTTTTCAGTGACTGTGCCTAA 58.734 39.130 12.93 0.00 32.61 2.69
310 3739 2.684881 CTGTTTTTCAGTGACTGTGCCT 59.315 45.455 12.93 0.00 39.17 4.75
311 3740 2.682856 TCTGTTTTTCAGTGACTGTGCC 59.317 45.455 12.93 0.00 43.97 5.01
313 3742 5.739752 TCATCTGTTTTTCAGTGACTGTG 57.260 39.130 12.93 0.12 43.97 3.66
314 3743 5.240183 CCATCATCTGTTTTTCAGTGACTGT 59.760 40.000 12.93 0.00 43.97 3.55
413 3856 2.681064 AATGCCACCGCCATGCTT 60.681 55.556 0.00 0.00 0.00 3.91
422 3865 3.818787 CGAGCTGCCAATGCCACC 61.819 66.667 0.00 0.00 36.33 4.61
423 3866 4.487412 GCGAGCTGCCAATGCCAC 62.487 66.667 0.00 0.00 37.76 5.01
439 3882 2.435938 TTCCGTTGGCATCGAGGC 60.436 61.111 14.84 14.84 44.50 4.70
441 3884 1.970917 GCTGTTCCGTTGGCATCGAG 61.971 60.000 18.84 9.35 0.00 4.04
442 3885 2.032634 GCTGTTCCGTTGGCATCGA 61.033 57.895 18.84 3.14 0.00 3.59
443 3886 2.244436 CTGCTGTTCCGTTGGCATCG 62.244 60.000 10.88 10.88 34.12 3.84
444 3887 1.237285 ACTGCTGTTCCGTTGGCATC 61.237 55.000 0.00 0.00 34.12 3.91
446 3889 2.186160 CACTGCTGTTCCGTTGGCA 61.186 57.895 0.00 0.00 0.00 4.92
447 3890 0.882927 TACACTGCTGTTCCGTTGGC 60.883 55.000 0.00 0.00 0.00 4.52
454 3898 4.435651 GGCGATAAAACTACACTGCTGTTC 60.436 45.833 0.00 0.00 0.00 3.18
455 3899 3.435671 GGCGATAAAACTACACTGCTGTT 59.564 43.478 0.00 0.00 0.00 3.16
459 3903 2.223044 GCTGGCGATAAAACTACACTGC 60.223 50.000 0.00 0.00 0.00 4.40
464 3908 1.306148 GGGGCTGGCGATAAAACTAC 58.694 55.000 0.00 0.00 0.00 2.73
493 3938 1.646540 CACAGCGCAAGGAACGAAA 59.353 52.632 11.47 0.00 38.28 3.46
494 3939 2.892334 GCACAGCGCAAGGAACGAA 61.892 57.895 11.47 0.00 41.79 3.85
495 3940 3.345808 GCACAGCGCAAGGAACGA 61.346 61.111 11.47 0.00 41.79 3.85
496 3941 4.389576 GGCACAGCGCAAGGAACG 62.390 66.667 11.47 0.00 45.17 3.95
497 3942 4.389576 CGGCACAGCGCAAGGAAC 62.390 66.667 11.47 0.00 45.17 3.62
589 4041 1.730902 CTCTCTCACGCACGTGGTG 60.731 63.158 23.22 23.22 45.43 4.17
636 4110 2.285256 CGCGAATCTTTCCTGACGAATG 60.285 50.000 0.00 0.00 0.00 2.67
639 4113 1.076533 GCGCGAATCTTTCCTGACGA 61.077 55.000 12.10 0.00 0.00 4.20
640 4114 1.345176 GCGCGAATCTTTCCTGACG 59.655 57.895 12.10 0.00 0.00 4.35
708 4182 2.505777 CGTCTGCCTCTGTCAGCG 60.506 66.667 0.00 0.00 0.00 5.18
802 4280 4.431131 ACGCTCATGGGCCCCAAG 62.431 66.667 22.27 15.08 36.95 3.61
803 4281 4.424711 GACGCTCATGGGCCCCAA 62.425 66.667 22.27 0.09 36.95 4.12
824 4302 2.816087 ACACAGTACTACTACACACCGG 59.184 50.000 0.00 0.00 0.00 5.28
972 4496 0.328258 CATTCCTTCCTCGGTGGGTT 59.672 55.000 0.00 0.00 36.20 4.11
996 4520 5.242838 GCAGGAAGATGATGCTACTACTACT 59.757 44.000 0.00 0.00 37.00 2.57
998 4522 4.524714 GGCAGGAAGATGATGCTACTACTA 59.475 45.833 0.00 0.00 39.88 1.82
1273 4805 3.905437 TTTTACCGCGGGTGGAGGC 62.905 63.158 31.76 0.00 39.59 4.70
1274 4806 1.302671 TTTTTACCGCGGGTGGAGG 60.303 57.895 31.76 1.69 42.10 4.30
1293 4825 2.387510 GGGATAGATAGGGGGAAGAGGT 59.612 54.545 0.00 0.00 0.00 3.85
1299 4831 2.660556 GGAAGAGGGATAGATAGGGGGA 59.339 54.545 0.00 0.00 0.00 4.81
1432 4964 2.171870 ACTTTCGAAGTTCAACTGGGGA 59.828 45.455 3.32 0.00 39.04 4.81
1433 4965 2.548480 GACTTTCGAAGTTCAACTGGGG 59.452 50.000 3.32 0.00 43.03 4.96
1434 4966 2.221055 CGACTTTCGAAGTTCAACTGGG 59.779 50.000 3.32 0.00 43.74 4.45
1435 4967 3.120792 TCGACTTTCGAAGTTCAACTGG 58.879 45.455 3.32 0.00 46.90 4.00
1471 5003 3.825908 TCTTTTGGCCTTATCCCTTGT 57.174 42.857 3.32 0.00 0.00 3.16
1535 5090 1.259544 CGACGCAACGGAACAAAAGC 61.260 55.000 0.00 0.00 0.00 3.51
1823 5411 0.476338 TGTGAAAGGGGTTAGCTGCA 59.524 50.000 1.02 0.00 0.00 4.41
1913 5504 4.856607 GAGAAGGAGTCGCCGGCG 62.857 72.222 42.13 42.13 43.43 6.46
1954 5545 2.124570 CTGTGGCGAATGAGGGGG 60.125 66.667 0.00 0.00 0.00 5.40
1962 5553 1.655484 CATCATGTAGCTGTGGCGAA 58.345 50.000 0.00 0.00 44.37 4.70
1963 5554 0.811219 GCATCATGTAGCTGTGGCGA 60.811 55.000 0.00 0.00 44.37 5.54
2009 5600 2.358898 ACAGCCAACAAACAGTAAGCAG 59.641 45.455 0.00 0.00 32.38 4.24
2138 5729 2.604686 AAGCACCTGGGCGAGAGA 60.605 61.111 0.00 0.00 39.27 3.10
2262 5853 1.315257 GGGTACTGCATGTTGCCAGG 61.315 60.000 0.00 0.00 44.23 4.45
2321 5912 1.570857 CCCCATACCTCCTGTTGGCA 61.571 60.000 0.00 0.00 0.00 4.92
2426 6017 0.695462 TCCCCATCCCATCACAGGAG 60.695 60.000 0.00 0.00 36.67 3.69
2513 6104 1.656652 CATAAGCTCCTGGAACACCG 58.343 55.000 0.00 0.00 0.00 4.94
2645 6236 1.707632 CTCTTCCACTGCTGAAGTCG 58.292 55.000 0.00 0.00 40.10 4.18
2714 6305 4.292186 TGCTGATCTCCAAATATAGGGC 57.708 45.455 0.00 0.00 0.00 5.19
2717 6308 6.090088 GCGTACTTGCTGATCTCCAAATATAG 59.910 42.308 0.00 0.00 0.00 1.31
2723 6314 1.275010 TGCGTACTTGCTGATCTCCAA 59.725 47.619 0.00 0.00 35.36 3.53
2741 6332 0.385974 GTGTTTCTGTCCACGCATGC 60.386 55.000 7.91 7.91 0.00 4.06
2821 6412 9.491675 AAATATGCTTGATACTGATGAGAAGAG 57.508 33.333 0.00 0.00 0.00 2.85
2908 6588 6.642950 GGGATGTAAGATTTGAGATACACGAG 59.357 42.308 0.00 0.00 31.65 4.18
3028 6708 5.382618 ACTTCTGCCATTTGTCTGATTTC 57.617 39.130 0.00 0.00 0.00 2.17
3219 6901 3.483587 GGAGTTGCTCCCTGTGGA 58.516 61.111 3.89 0.00 44.36 4.02
3321 7003 1.379576 GCTGGAGCAGGAATGCCTT 60.380 57.895 0.00 0.00 43.90 4.35
3432 7114 4.980805 TGTCGCTTGGACCACCGC 62.981 66.667 8.49 6.83 45.46 5.68
3513 7195 3.224007 AAAAGATGGTGCCCGGGCT 62.224 57.895 43.34 26.37 42.51 5.19
3574 7256 5.989551 AGACAAAATGGCAAACATGAAAC 57.010 34.783 0.00 0.00 40.44 2.78
3595 7277 5.864474 AGTGCTAAAATCAGTTCACTCGTAG 59.136 40.000 0.00 0.00 29.81 3.51
3599 7281 7.054855 CAGTAGTGCTAAAATCAGTTCACTC 57.945 40.000 0.00 0.00 36.37 3.51
3616 7298 1.002366 GTGCGAATCTGGCAGTAGTG 58.998 55.000 15.27 4.89 41.83 2.74
3617 7299 0.458543 CGTGCGAATCTGGCAGTAGT 60.459 55.000 15.27 0.17 41.83 2.73
3618 7300 0.179137 TCGTGCGAATCTGGCAGTAG 60.179 55.000 15.27 5.72 41.83 2.57
3619 7301 0.245266 TTCGTGCGAATCTGGCAGTA 59.755 50.000 15.27 1.50 41.83 2.74
3620 7302 1.005037 TTCGTGCGAATCTGGCAGT 60.005 52.632 15.27 0.00 41.83 4.40
3621 7303 1.699656 CCTTCGTGCGAATCTGGCAG 61.700 60.000 8.58 8.58 41.83 4.85
3622 7304 1.741401 CCTTCGTGCGAATCTGGCA 60.741 57.895 7.50 0.00 38.25 4.92
3623 7305 3.093278 CCTTCGTGCGAATCTGGC 58.907 61.111 7.50 0.00 33.28 4.85
3624 7306 1.741401 TGCCTTCGTGCGAATCTGG 60.741 57.895 7.50 7.04 33.28 3.86
3625 7307 1.291184 TGTGCCTTCGTGCGAATCTG 61.291 55.000 7.50 1.70 33.28 2.90
3626 7308 1.005037 TGTGCCTTCGTGCGAATCT 60.005 52.632 7.50 0.00 33.28 2.40
3631 7313 3.227372 CTGTGTGTGCCTTCGTGCG 62.227 63.158 0.00 0.00 0.00 5.34
3643 7325 3.383620 AAGCACTCTCTCTTCTGTGTG 57.616 47.619 0.00 0.00 33.44 3.82
3644 7326 3.386078 TGAAAGCACTCTCTCTTCTGTGT 59.614 43.478 0.00 0.00 33.44 3.72
3651 7333 3.072184 ACCACAATGAAAGCACTCTCTCT 59.928 43.478 0.00 0.00 0.00 3.10
3652 7334 3.406764 ACCACAATGAAAGCACTCTCTC 58.593 45.455 0.00 0.00 0.00 3.20
3674 7356 7.365117 GGGCCATATGAGACTAACAGCTATAAT 60.365 40.741 4.39 0.00 0.00 1.28
3680 7362 2.104792 TGGGCCATATGAGACTAACAGC 59.895 50.000 0.00 0.00 0.00 4.40
3687 7369 0.036010 CGGGATGGGCCATATGAGAC 60.036 60.000 21.26 5.46 38.95 3.36
3688 7370 1.841302 GCGGGATGGGCCATATGAGA 61.841 60.000 21.26 0.00 38.95 3.27
3691 7373 1.676635 CAGCGGGATGGGCCATATG 60.677 63.158 21.26 13.16 38.95 1.78
3696 7378 4.864334 CTGACAGCGGGATGGGCC 62.864 72.222 0.00 0.00 0.00 5.80
3697 7379 3.746949 CTCTGACAGCGGGATGGGC 62.747 68.421 0.00 0.00 0.00 5.36
3716 7398 1.298014 GTGGGACTCTTGCTGGGAG 59.702 63.158 0.00 0.00 36.92 4.30
3730 7412 0.971386 AAAAGCAAGCCATCTGTGGG 59.029 50.000 0.00 0.00 46.14 4.61
3740 7422 4.571984 ACAAACATTTCCAGAAAAGCAAGC 59.428 37.500 0.00 0.00 33.56 4.01
3767 7449 7.643123 ACTGTAGGATGACCCTTTCATTAAAT 58.357 34.615 0.00 0.00 45.67 1.40
3768 7450 7.027874 ACTGTAGGATGACCCTTTCATTAAA 57.972 36.000 0.00 0.00 45.67 1.52
3778 7460 1.580059 TTGGGACTGTAGGATGACCC 58.420 55.000 0.00 0.00 37.99 4.46
3829 7511 5.858876 ACCATTCCTACCCATATGCATTA 57.141 39.130 3.54 0.00 0.00 1.90
3848 7530 5.011738 GGCTACCATACTTAGCTCATTACCA 59.988 44.000 0.00 0.00 41.55 3.25
3885 7567 4.141756 GCCACATAGCAGCCAGATCTATAT 60.142 45.833 0.00 0.00 0.00 0.86
3899 7581 2.082231 CATATCAGCAGGCCACATAGC 58.918 52.381 5.01 0.05 0.00 2.97
3911 7593 5.236282 ACATGTCATGAGTAGCATATCAGC 58.764 41.667 19.77 0.00 34.82 4.26
3925 7607 7.063898 CAGTTAGTCCACTAAGAACATGTCATG 59.936 40.741 11.41 11.41 38.94 3.07
3926 7608 7.039011 TCAGTTAGTCCACTAAGAACATGTCAT 60.039 37.037 0.00 0.00 38.94 3.06
3944 7626 6.398918 ACTGTCGATTGCTTATTCAGTTAGT 58.601 36.000 0.00 0.00 31.95 2.24
3981 7663 7.413877 GCAACTTCAAATTGTGGAATTTTGTCA 60.414 33.333 0.00 0.00 39.34 3.58
3985 7667 6.998968 TGCAACTTCAAATTGTGGAATTTT 57.001 29.167 0.00 0.00 39.34 1.82
3988 7670 7.571080 AAATTGCAACTTCAAATTGTGGAAT 57.429 28.000 0.00 0.00 0.00 3.01
4010 7692 2.237643 TGCATGCAACTCCAGCTAAAA 58.762 42.857 20.30 0.00 0.00 1.52
4023 7705 3.410508 TCAGTCACAGTATTTGCATGCA 58.589 40.909 18.46 18.46 0.00 3.96
4024 7706 4.424061 TTCAGTCACAGTATTTGCATGC 57.576 40.909 11.82 11.82 0.00 4.06
4038 7720 5.049198 GCTGAAGAACATGTCATTTCAGTCA 60.049 40.000 28.65 17.46 44.00 3.41
4052 7736 1.405105 GTGCCAGTTTGCTGAAGAACA 59.595 47.619 0.00 0.00 45.28 3.18
4053 7737 1.405105 TGTGCCAGTTTGCTGAAGAAC 59.595 47.619 0.00 0.00 45.28 3.01
4074 7793 8.594687 GCGCTGAATTAAATTTGTAACATGATT 58.405 29.630 0.00 0.00 0.00 2.57
4079 7798 5.792962 CGAGCGCTGAATTAAATTTGTAACA 59.207 36.000 18.48 0.00 0.00 2.41
4098 8101 5.462068 TGATATCATAAAACACCTTCGAGCG 59.538 40.000 0.00 0.00 0.00 5.03
4149 8153 5.853572 ACCCTCTGGAATTTACTTACCAA 57.146 39.130 0.00 0.00 34.81 3.67
4171 8175 5.661759 GTCCTCCTACTCTAAAGATGGGAAA 59.338 44.000 0.00 0.00 0.00 3.13
4186 8190 6.981559 GTCTTTCACAATCTATGTCCTCCTAC 59.018 42.308 0.00 0.00 41.46 3.18
4226 8230 3.447944 GCCAGTTGCTAGAGTACCTTACT 59.552 47.826 0.00 0.00 38.29 2.24
4227 8231 3.194968 TGCCAGTTGCTAGAGTACCTTAC 59.805 47.826 0.00 0.00 42.00 2.34
4228 8232 3.437213 TGCCAGTTGCTAGAGTACCTTA 58.563 45.455 0.00 0.00 42.00 2.69
4229 8233 2.257207 TGCCAGTTGCTAGAGTACCTT 58.743 47.619 0.00 0.00 42.00 3.50
4231 8235 2.762535 TTGCCAGTTGCTAGAGTACC 57.237 50.000 0.00 0.00 42.00 3.34
4252 8256 3.191371 GTGCCGATTTCTCCTTGTCATTT 59.809 43.478 0.00 0.00 0.00 2.32
4258 8262 1.533625 TTGGTGCCGATTTCTCCTTG 58.466 50.000 0.00 0.00 0.00 3.61
4309 8313 2.401583 AGATTCACACGCCATAAGCA 57.598 45.000 0.00 0.00 44.04 3.91
4315 8319 2.198827 AATCCAAGATTCACACGCCA 57.801 45.000 0.00 0.00 0.00 5.69
4316 8320 2.749621 AGAAATCCAAGATTCACACGCC 59.250 45.455 0.00 0.00 0.00 5.68
4318 8322 6.668541 ACATAGAAATCCAAGATTCACACG 57.331 37.500 0.00 0.00 0.00 4.49
4350 8354 9.556030 GCAAACAACTAAAAGTATGATTCCTAC 57.444 33.333 0.00 0.00 0.00 3.18
4391 8397 4.998672 TGTACAATAGGAAAAACAGGACCG 59.001 41.667 0.00 0.00 0.00 4.79
4434 8442 8.267894 AGTTAATGTGCAATAGTAACTGAGGAT 58.732 33.333 18.52 1.24 34.53 3.24
4678 8687 3.569701 ACAAAGGGCAGAACATGTAAGTG 59.430 43.478 0.00 0.00 0.00 3.16
4725 8734 7.546250 AATTCTATCCATCGATAGTGACCTT 57.454 36.000 7.16 0.00 45.69 3.50
4732 8741 5.939883 TGCCCAAAATTCTATCCATCGATAG 59.060 40.000 0.00 1.17 46.53 2.08
4733 8742 5.875224 TGCCCAAAATTCTATCCATCGATA 58.125 37.500 0.00 0.00 0.00 2.92
4783 8792 1.021390 ACTGTAGTGCGCATGCCTTC 61.021 55.000 15.91 4.63 41.78 3.46
4809 8818 1.515020 AGCACACTGATCCTCGCTC 59.485 57.895 0.00 0.00 0.00 5.03
5029 9038 5.194432 TGGGCGGCTAATATTAACTTTTCA 58.806 37.500 9.56 0.00 0.00 2.69
5134 9144 2.014857 ACTGCATGCTGATAAGCTGTG 58.985 47.619 28.74 3.76 37.68 3.66
5176 9186 3.498774 AAATAGGGCTAGCCATGTCTG 57.501 47.619 34.09 0.00 37.98 3.51
5206 9216 6.997476 AGGGAGATCAAGCTTATGAAGATTTC 59.003 38.462 0.00 2.29 34.36 2.17
5273 9283 2.437281 AGCCAAGGGTCTGTCAGATATG 59.563 50.000 5.68 3.42 0.00 1.78
5292 9312 4.274459 CCAAATCTACACTCAGCCAATAGC 59.726 45.833 0.00 0.00 44.25 2.97
5346 9383 4.762765 ACCAAACGTACATGGAATTAAGCA 59.237 37.500 18.59 0.00 39.12 3.91
5363 9400 4.302559 AAATCACTCCTAGGGACCAAAC 57.697 45.455 9.46 0.00 25.25 2.93
5398 9435 1.376086 CCACATCAGTCAGCACCCA 59.624 57.895 0.00 0.00 0.00 4.51
5399 9436 2.042831 GCCACATCAGTCAGCACCC 61.043 63.158 0.00 0.00 0.00 4.61
5426 9463 4.393680 GGTGAACTGGTTATGTCGCAATAA 59.606 41.667 0.00 0.00 0.00 1.40
5495 9535 9.636789 AGTTTACAGTGGGAGTAGTTTTTAAAT 57.363 29.630 0.00 0.00 0.00 1.40
5504 9544 5.730550 TGCATTAGTTTACAGTGGGAGTAG 58.269 41.667 0.00 0.00 0.00 2.57
5507 9547 5.245531 TCTTGCATTAGTTTACAGTGGGAG 58.754 41.667 0.00 0.00 0.00 4.30
5508 9548 5.235850 TCTTGCATTAGTTTACAGTGGGA 57.764 39.130 0.00 0.00 0.00 4.37
5509 9549 5.415701 ACATCTTGCATTAGTTTACAGTGGG 59.584 40.000 0.00 0.00 0.00 4.61
5510 9550 6.500684 ACATCTTGCATTAGTTTACAGTGG 57.499 37.500 0.00 0.00 0.00 4.00
5511 9551 8.801715 AAAACATCTTGCATTAGTTTACAGTG 57.198 30.769 7.27 0.00 32.62 3.66
5534 9574 6.405538 AGGACATTTTTGCAGTTCTGAAAAA 58.594 32.000 12.93 12.93 34.13 1.94
5535 9575 5.976458 AGGACATTTTTGCAGTTCTGAAAA 58.024 33.333 3.84 2.96 0.00 2.29
5536 9576 5.596836 AGGACATTTTTGCAGTTCTGAAA 57.403 34.783 3.84 0.00 0.00 2.69
5537 9577 6.707440 TTAGGACATTTTTGCAGTTCTGAA 57.293 33.333 3.84 0.00 0.00 3.02
5538 9578 6.707440 TTTAGGACATTTTTGCAGTTCTGA 57.293 33.333 3.84 0.00 0.00 3.27
5539 9579 7.951530 AATTTAGGACATTTTTGCAGTTCTG 57.048 32.000 0.00 0.00 0.00 3.02
5540 9580 9.696917 CTAAATTTAGGACATTTTTGCAGTTCT 57.303 29.630 16.19 0.00 0.00 3.01
5541 9581 9.691362 TCTAAATTTAGGACATTTTTGCAGTTC 57.309 29.630 22.11 0.00 0.00 3.01
5545 9585 9.823647 TGTTTCTAAATTTAGGACATTTTTGCA 57.176 25.926 22.11 7.13 0.00 4.08
5552 9592 9.628500 GGACCTATGTTTCTAAATTTAGGACAT 57.372 33.333 29.69 29.69 39.24 3.06
5553 9593 8.607713 TGGACCTATGTTTCTAAATTTAGGACA 58.392 33.333 24.51 24.51 34.35 4.02
5554 9594 9.628500 ATGGACCTATGTTTCTAAATTTAGGAC 57.372 33.333 22.11 19.82 33.30 3.85
5570 9610 9.155975 GCACTCAAACTATAATATGGACCTATG 57.844 37.037 0.00 0.00 0.00 2.23
5571 9611 8.322091 GGCACTCAAACTATAATATGGACCTAT 58.678 37.037 0.00 0.00 0.00 2.57
5572 9612 7.291416 TGGCACTCAAACTATAATATGGACCTA 59.709 37.037 0.00 0.00 0.00 3.08
5573 9613 6.101150 TGGCACTCAAACTATAATATGGACCT 59.899 38.462 0.00 0.00 0.00 3.85
5574 9614 6.296026 TGGCACTCAAACTATAATATGGACC 58.704 40.000 0.00 0.00 0.00 4.46
5575 9615 7.801716 TTGGCACTCAAACTATAATATGGAC 57.198 36.000 0.00 0.00 31.46 4.02
5618 9752 6.058183 AGGCTGTTTGCTTATCCTACAATAG 58.942 40.000 0.00 0.00 42.39 1.73
5688 9822 1.949525 TGAGCTGCAAAGGTTCTGAAC 59.050 47.619 12.05 12.05 0.00 3.18
5735 9869 1.163420 ACGGCGAACATTTGCAGTCA 61.163 50.000 16.62 0.00 41.18 3.41
5800 9934 3.603532 GAGTGCTTCATTCATCAGACCA 58.396 45.455 0.00 0.00 0.00 4.02
5819 9981 0.596577 TTTCTGACACTCCGGTCGAG 59.403 55.000 0.00 0.00 44.95 4.04
5820 9982 1.034356 TTTTCTGACACTCCGGTCGA 58.966 50.000 0.00 0.00 40.72 4.20
5821 9983 1.993370 GATTTTCTGACACTCCGGTCG 59.007 52.381 0.00 0.00 40.72 4.79
5822 9984 1.993370 CGATTTTCTGACACTCCGGTC 59.007 52.381 0.00 0.00 38.29 4.79
5823 9985 1.616865 TCGATTTTCTGACACTCCGGT 59.383 47.619 0.00 0.00 0.00 5.28
5824 9986 2.363788 TCGATTTTCTGACACTCCGG 57.636 50.000 0.00 0.00 0.00 5.14
5825 9987 2.092838 GCTTCGATTTTCTGACACTCCG 59.907 50.000 0.00 0.00 0.00 4.63
5826 9988 3.067106 TGCTTCGATTTTCTGACACTCC 58.933 45.455 0.00 0.00 0.00 3.85
5827 9989 4.935885 ATGCTTCGATTTTCTGACACTC 57.064 40.909 0.00 0.00 0.00 3.51
5828 9990 4.083110 CCAATGCTTCGATTTTCTGACACT 60.083 41.667 0.00 0.00 0.00 3.55
5829 9991 4.083324 TCCAATGCTTCGATTTTCTGACAC 60.083 41.667 0.00 0.00 0.00 3.67
5830 9992 4.071423 TCCAATGCTTCGATTTTCTGACA 58.929 39.130 0.00 0.00 0.00 3.58
5831 9993 4.656041 CTCCAATGCTTCGATTTTCTGAC 58.344 43.478 0.00 0.00 0.00 3.51
5832 9994 3.127548 GCTCCAATGCTTCGATTTTCTGA 59.872 43.478 0.00 0.00 0.00 3.27
5833 9995 3.119743 TGCTCCAATGCTTCGATTTTCTG 60.120 43.478 0.00 0.00 0.00 3.02
5834 9996 3.084039 TGCTCCAATGCTTCGATTTTCT 58.916 40.909 0.00 0.00 0.00 2.52
5835 9997 3.127548 TCTGCTCCAATGCTTCGATTTTC 59.872 43.478 0.00 0.00 0.00 2.29
5836 9998 3.084039 TCTGCTCCAATGCTTCGATTTT 58.916 40.909 0.00 0.00 0.00 1.82
5837 9999 2.681848 CTCTGCTCCAATGCTTCGATTT 59.318 45.455 0.00 0.00 0.00 2.17
5838 10000 2.286872 CTCTGCTCCAATGCTTCGATT 58.713 47.619 0.00 0.00 0.00 3.34
5839 10001 1.950828 CTCTGCTCCAATGCTTCGAT 58.049 50.000 0.00 0.00 0.00 3.59
5840 10002 0.742281 GCTCTGCTCCAATGCTTCGA 60.742 55.000 0.00 0.00 0.00 3.71
5841 10003 1.712977 GGCTCTGCTCCAATGCTTCG 61.713 60.000 0.00 0.00 0.00 3.79
5842 10004 1.382692 GGGCTCTGCTCCAATGCTTC 61.383 60.000 0.00 0.00 0.00 3.86
5843 10005 1.379576 GGGCTCTGCTCCAATGCTT 60.380 57.895 0.00 0.00 0.00 3.91
5844 10006 2.274760 GGGCTCTGCTCCAATGCT 59.725 61.111 0.00 0.00 0.00 3.79
5845 10007 2.044650 TGGGCTCTGCTCCAATGC 60.045 61.111 0.00 0.00 0.00 3.56
5846 10008 0.747283 GAGTGGGCTCTGCTCCAATG 60.747 60.000 5.16 0.00 38.66 2.82
5847 10009 1.606531 GAGTGGGCTCTGCTCCAAT 59.393 57.895 0.00 0.00 38.66 3.16
5856 10018 0.898320 TCAGCTACAAGAGTGGGCTC 59.102 55.000 0.00 0.00 41.94 4.70
5888 10055 3.002862 CAGATACAGAGTACCGAGTGAGC 59.997 52.174 0.00 0.00 0.00 4.26
5889 10056 4.193090 ACAGATACAGAGTACCGAGTGAG 58.807 47.826 0.00 0.00 0.00 3.51
5978 10145 3.735037 GAACCGGCCCGATCAGTCC 62.735 68.421 3.71 0.00 0.00 3.85
5981 10148 2.107141 GAGAACCGGCCCGATCAG 59.893 66.667 3.71 0.00 0.00 2.90
5982 10149 3.833645 CGAGAACCGGCCCGATCA 61.834 66.667 3.71 0.00 33.91 2.92
5983 10150 3.834799 ACGAGAACCGGCCCGATC 61.835 66.667 3.71 2.16 43.93 3.69
5984 10151 4.143333 CACGAGAACCGGCCCGAT 62.143 66.667 3.71 0.00 43.93 4.18
5995 10162 2.685017 ATCAGGCAGCCCACGAGA 60.685 61.111 8.22 0.00 0.00 4.04
5999 10166 1.077212 ACATCATCAGGCAGCCCAC 60.077 57.895 8.22 0.00 0.00 4.61
6081 10248 5.176223 CACAACTTTGTTCAATGAATCCAGC 59.824 40.000 0.00 0.00 39.91 4.85
6082 10249 6.506147 TCACAACTTTGTTCAATGAATCCAG 58.494 36.000 0.00 0.00 39.91 3.86
6139 10306 1.537202 CACCTCCAGCTTGTTTGTAGC 59.463 52.381 0.00 0.00 38.93 3.58
6162 10329 1.066002 CAAGACCAGCCAACACTTGTG 59.934 52.381 0.00 0.00 34.96 3.33
6295 10509 2.743928 GACAACCCGGAGCAGCAG 60.744 66.667 0.73 0.00 0.00 4.24
6296 10510 4.329545 GGACAACCCGGAGCAGCA 62.330 66.667 0.73 0.00 0.00 4.41
6299 10513 2.144078 TCTTGGACAACCCGGAGCA 61.144 57.895 0.73 0.00 37.93 4.26
6333 10549 2.359230 GTGGACACAGGGCTCAGC 60.359 66.667 0.00 0.00 0.00 4.26
6335 10551 2.574018 CGAGTGGACACAGGGCTCA 61.574 63.158 5.14 0.00 0.00 4.26
6374 10611 0.676782 AAAGGTAGGTGGATGCGTGC 60.677 55.000 0.00 0.00 0.00 5.34
6514 10760 5.800941 CAGACCGGATAAAGATAAGCGATAC 59.199 44.000 9.46 0.00 0.00 2.24
6533 10780 0.951040 CAGTGGAGAAACGGCAGACC 60.951 60.000 0.00 0.00 0.00 3.85
6647 10899 2.130193 ACTACCATGGCAGGTGATGAT 58.870 47.619 16.61 0.00 43.14 2.45
6720 10972 1.298041 GACTCGCTCTACTGCTCGC 60.298 63.158 0.00 0.00 0.00 5.03
6727 10979 1.297745 CGCCTTCGACTCGCTCTAC 60.298 63.158 0.00 0.00 38.10 2.59
6832 11084 3.054779 TGTTCTAATGCCCTAGCCCTA 57.945 47.619 0.00 0.00 38.69 3.53
6833 11085 1.893315 TGTTCTAATGCCCTAGCCCT 58.107 50.000 0.00 0.00 38.69 5.19
6888 11140 4.274214 TCGTGTGTCTATAGGTTGTATCCG 59.726 45.833 0.00 0.00 0.00 4.18
6951 11203 3.225758 GCGATCGGCGATTGTCTC 58.774 61.111 31.48 16.59 44.57 3.36
6984 11236 1.009389 GGCGTGTTGAGAGTCTTCGG 61.009 60.000 0.00 0.00 0.00 4.30
7007 11259 1.397441 GCGATGCGTTTAACGTTGTCA 60.397 47.619 18.78 8.52 44.73 3.58
7026 11278 4.929707 CGCCTAACCCCATCCGGC 62.930 72.222 0.00 0.00 37.40 6.13
7032 11284 3.566016 TTCTCCCCGCCTAACCCCA 62.566 63.158 0.00 0.00 0.00 4.96
7037 11291 2.185663 ATAAGGTTCTCCCCGCCTAA 57.814 50.000 0.00 0.00 31.43 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.