Multiple sequence alignment - TraesCS6D01G310900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G310900 chr6D 100.000 7322 0 0 1 7322 420741959 420749280 0.000000e+00 13522.0
1 TraesCS6D01G310900 chr6D 93.333 60 3 1 2269 2328 145788556 145788498 3.640000e-13 87.9
2 TraesCS6D01G310900 chr6D 93.333 60 3 1 2268 2327 146072812 146072870 3.640000e-13 87.9
3 TraesCS6D01G310900 chr6B 94.685 4948 191 31 2401 7322 633911478 633916379 0.000000e+00 7614.0
4 TraesCS6D01G310900 chr6B 84.492 748 55 32 788 1495 633909923 633910649 0.000000e+00 682.0
5 TraesCS6D01G310900 chr6B 88.285 478 44 7 12 478 633909132 633909608 4.960000e-156 562.0
6 TraesCS6D01G310900 chr6B 82.933 416 33 16 1900 2283 633911022 633911431 2.530000e-89 340.0
7 TraesCS6D01G310900 chr6B 82.400 125 13 5 3776 3898 674381380 674381497 4.670000e-17 100.0
8 TraesCS6D01G310900 chr6A 94.652 2543 93 14 4782 7322 563709091 563711592 0.000000e+00 3903.0
9 TraesCS6D01G310900 chr6A 95.067 1500 65 5 2324 3818 563706287 563707782 0.000000e+00 2351.0
10 TraesCS6D01G310900 chr6A 97.360 947 24 1 3856 4802 563707789 563708734 0.000000e+00 1609.0
11 TraesCS6D01G310900 chr6A 85.554 623 34 29 860 1452 563700808 563701404 1.050000e-167 601.0
12 TraesCS6D01G310900 chr6A 93.467 199 12 1 337 534 563700062 563700260 2.000000e-75 294.0
13 TraesCS6D01G310900 chr6A 88.095 210 13 4 532 736 563700376 563700578 9.490000e-59 239.0
14 TraesCS6D01G310900 chr6A 94.521 146 7 1 2137 2281 563706143 563706288 2.660000e-54 224.0
15 TraesCS6D01G310900 chr6A 85.714 147 7 4 1900 2038 563705783 563705923 7.660000e-30 143.0
16 TraesCS6D01G310900 chr6A 91.837 98 5 3 2036 2133 563705962 563706056 4.610000e-27 134.0
17 TraesCS6D01G310900 chr6A 98.246 57 1 0 788 844 563700604 563700660 4.670000e-17 100.0
18 TraesCS6D01G310900 chr2B 89.729 1879 132 26 4389 6259 15780905 15782730 0.000000e+00 2344.0
19 TraesCS6D01G310900 chr2B 89.781 1869 130 26 4399 6259 15853371 15855186 0.000000e+00 2337.0
20 TraesCS6D01G310900 chr2B 92.269 1190 66 12 5074 6259 15717473 15718640 0.000000e+00 1664.0
21 TraesCS6D01G310900 chr2B 90.189 795 55 14 6530 7322 15782730 15783503 0.000000e+00 1014.0
22 TraesCS6D01G310900 chr2B 90.063 795 56 14 6530 7322 15855186 15855959 0.000000e+00 1009.0
23 TraesCS6D01G310900 chr2B 88.191 796 54 16 6530 7322 15718640 15719398 0.000000e+00 913.0
24 TraesCS6D01G310900 chr2B 90.944 519 36 7 5074 5589 15953710 15954220 0.000000e+00 688.0
25 TraesCS6D01G310900 chr2B 85.692 643 57 13 4389 5027 15716858 15717469 0.000000e+00 645.0
26 TraesCS6D01G310900 chr2B 85.692 643 57 16 4389 5027 15952612 15953223 0.000000e+00 645.0
27 TraesCS6D01G310900 chr2B 86.486 111 10 3 3791 3901 456031266 456031371 4.640000e-22 117.0
28 TraesCS6D01G310900 chr7A 88.753 1876 137 32 4389 6259 11675089 11676895 0.000000e+00 2228.0
29 TraesCS6D01G310900 chr7A 90.189 795 55 14 6530 7322 11676895 11677668 0.000000e+00 1014.0
30 TraesCS6D01G310900 chrUn 92.269 1190 66 12 5074 6259 333314434 333313267 0.000000e+00 1664.0
31 TraesCS6D01G310900 chrUn 88.191 796 54 16 6530 7322 333313267 333312509 0.000000e+00 913.0
32 TraesCS6D01G310900 chrUn 90.944 519 36 7 5074 5589 437075569 437076079 0.000000e+00 688.0
33 TraesCS6D01G310900 chrUn 85.537 643 58 13 4389 5027 375150997 375151608 2.230000e-179 640.0
34 TraesCS6D01G310900 chrUn 85.466 633 57 13 4399 5027 437074964 437075565 1.730000e-175 627.0
35 TraesCS6D01G310900 chrUn 89.855 276 23 4 7052 7322 124973938 124973663 4.200000e-92 350.0
36 TraesCS6D01G310900 chrUn 92.105 190 5 4 6853 7036 124974421 124974236 7.290000e-65 259.0
37 TraesCS6D01G310900 chrUn 91.579 190 6 4 6853 7036 259181471 259181286 3.390000e-63 254.0
38 TraesCS6D01G310900 chrUn 93.750 80 5 0 7243 7322 259180355 259180276 3.590000e-23 121.0
39 TraesCS6D01G310900 chrUn 85.366 82 10 2 2248 2327 376297174 376297093 4.710000e-12 84.2
40 TraesCS6D01G310900 chr4D 90.711 1238 92 12 4389 5613 508462611 508463838 0.000000e+00 1628.0
41 TraesCS6D01G310900 chr4D 93.783 563 30 3 5650 6211 508463829 508464387 0.000000e+00 841.0
42 TraesCS6D01G310900 chr4D 88.186 237 24 4 6641 6876 366044834 366045067 5.590000e-71 279.0
43 TraesCS6D01G310900 chr4D 93.478 184 10 1 6221 6404 508471825 508472006 9.360000e-69 272.0
44 TraesCS6D01G310900 chr3B 87.004 454 32 12 6869 7322 745704854 745704428 3.070000e-133 486.0
45 TraesCS6D01G310900 chr3B 81.102 127 18 5 3772 3898 825747218 825747098 6.050000e-16 97.1
46 TraesCS6D01G310900 chr3B 89.552 67 6 1 2262 2327 241678761 241678827 4.710000e-12 84.2
47 TraesCS6D01G310900 chr2A 87.764 237 26 3 6641 6876 381733014 381732780 2.600000e-69 274.0
48 TraesCS6D01G310900 chr2A 82.927 123 13 6 3776 3898 770016890 770016776 3.610000e-18 104.0
49 TraesCS6D01G310900 chr1A 85.816 141 13 4 3775 3914 292769431 292769565 7.660000e-30 143.0
50 TraesCS6D01G310900 chr1D 84.328 134 14 5 3776 3908 42284844 42284717 2.770000e-24 124.0
51 TraesCS6D01G310900 chr1B 83.465 127 15 4 3772 3898 8043704 8043824 6.000000e-21 113.0
52 TraesCS6D01G310900 chr1B 85.366 82 10 2 2248 2327 24741634 24741553 4.710000e-12 84.2
53 TraesCS6D01G310900 chr4B 82.031 128 17 4 3772 3899 97922023 97922144 3.610000e-18 104.0
54 TraesCS6D01G310900 chr4B 95.918 49 2 0 2279 2327 424937794 424937746 6.090000e-11 80.5
55 TraesCS6D01G310900 chr5D 95.312 64 3 0 1229 1292 398094569 398094632 1.300000e-17 102.0
56 TraesCS6D01G310900 chr5A 96.429 56 0 2 2275 2329 707799120 707799174 2.810000e-14 91.6
57 TraesCS6D01G310900 chr5A 88.571 70 5 2 2259 2327 567724149 567724082 1.690000e-11 82.4
58 TraesCS6D01G310900 chr7D 88.000 75 4 5 2255 2328 494673573 494673643 4.710000e-12 84.2
59 TraesCS6D01G310900 chr3A 89.130 46 3 2 153 197 507310963 507310919 1.000000e-03 56.5
60 TraesCS6D01G310900 chr3D 94.444 36 1 1 163 197 384864847 384864812 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G310900 chr6D 420741959 420749280 7321 False 13522.0 13522 100.000000 1 7322 1 chr6D.!!$F2 7321
1 TraesCS6D01G310900 chr6B 633909132 633916379 7247 False 2299.5 7614 87.598750 12 7322 4 chr6B.!!$F2 7310
2 TraesCS6D01G310900 chr6A 563705783 563711592 5809 False 1394.0 3903 93.191833 1900 7322 6 chr6A.!!$F2 5422
3 TraesCS6D01G310900 chr6A 563700062 563701404 1342 False 308.5 601 91.340500 337 1452 4 chr6A.!!$F1 1115
4 TraesCS6D01G310900 chr2B 15780905 15783503 2598 False 1679.0 2344 89.959000 4389 7322 2 chr2B.!!$F3 2933
5 TraesCS6D01G310900 chr2B 15853371 15855959 2588 False 1673.0 2337 89.922000 4399 7322 2 chr2B.!!$F4 2923
6 TraesCS6D01G310900 chr2B 15716858 15719398 2540 False 1074.0 1664 88.717333 4389 7322 3 chr2B.!!$F2 2933
7 TraesCS6D01G310900 chr2B 15952612 15954220 1608 False 666.5 688 88.318000 4389 5589 2 chr2B.!!$F5 1200
8 TraesCS6D01G310900 chr7A 11675089 11677668 2579 False 1621.0 2228 89.471000 4389 7322 2 chr7A.!!$F1 2933
9 TraesCS6D01G310900 chrUn 333312509 333314434 1925 True 1288.5 1664 90.230000 5074 7322 2 chrUn.!!$R4 2248
10 TraesCS6D01G310900 chrUn 437074964 437076079 1115 False 657.5 688 88.205000 4399 5589 2 chrUn.!!$F2 1190
11 TraesCS6D01G310900 chrUn 375150997 375151608 611 False 640.0 640 85.537000 4389 5027 1 chrUn.!!$F1 638
12 TraesCS6D01G310900 chrUn 124973663 124974421 758 True 304.5 350 90.980000 6853 7322 2 chrUn.!!$R2 469
13 TraesCS6D01G310900 chr4D 508462611 508464387 1776 False 1234.5 1628 92.247000 4389 6211 2 chr4D.!!$F3 1822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 1337 0.441145 ACGAGTTGCCGCGTAAAATC 59.559 50.0 4.92 6.87 45.47 2.17 F
1305 1778 0.036388 TAAGCCTGCACCTACACTGC 60.036 55.0 0.00 0.00 35.03 4.40 F
1648 2288 0.043940 AAGGGCAGGACCTCTCTCAT 59.956 55.0 0.00 0.00 40.87 2.90 F
2293 3073 0.106116 ATGACTACTCCCTCCGTCCC 60.106 60.0 0.00 0.00 0.00 4.46 F
2295 3075 0.106116 GACTACTCCCTCCGTCCCAT 60.106 60.0 0.00 0.00 0.00 4.00 F
2604 3392 1.002069 ATCTCACTTTGGCCCCATCA 58.998 50.0 0.00 0.00 0.00 3.07 F
4167 4981 2.038387 TCTTCCCTAAATTGCTCCGC 57.962 50.0 0.00 0.00 0.00 5.54 F
5128 6805 0.101759 GCGTCAATGGCAATGCAGAT 59.898 50.0 7.79 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 2406 0.450184 GCACCGTTAATCGTGCCATT 59.550 50.000 15.43 0.0 39.08 3.16 R
2947 3746 0.253044 TTGTGAGGACTATGCCAGCC 59.747 55.000 0.00 0.0 0.00 4.85 R
3283 4095 1.358877 TGTCGATCAAGCGGTGAATG 58.641 50.000 0.00 0.0 40.50 2.67 R
4248 5063 0.996583 CCTGGCCTTAGGTAAACCCA 59.003 55.000 3.32 0.0 36.42 4.51 R
4251 5066 4.200092 CTGAATCCTGGCCTTAGGTAAAC 58.800 47.826 3.32 0.0 38.99 2.01 R
4405 5220 1.004918 AAAGACCTTCAGGCCGACG 60.005 57.895 0.00 0.0 39.32 5.12 R
5860 7542 1.002773 ACTAACCAGGGTTACCAAGCG 59.997 52.381 6.82 0.0 40.13 4.68 R
6820 8504 0.100325 TTTTTGGCACTGTGCTGTCG 59.900 50.000 29.54 0.0 44.28 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.507162 TCATTCTTCTTTGGCCAGACA 57.493 42.857 5.11 0.00 0.00 3.41
22 23 3.415212 TCATTCTTCTTTGGCCAGACAG 58.585 45.455 5.11 3.72 0.00 3.51
23 24 3.072915 TCATTCTTCTTTGGCCAGACAGA 59.927 43.478 5.11 6.39 0.00 3.41
24 25 3.795688 TTCTTCTTTGGCCAGACAGAT 57.204 42.857 5.11 0.00 0.00 2.90
25 26 3.063510 TCTTCTTTGGCCAGACAGATG 57.936 47.619 5.11 11.25 0.00 2.90
26 27 2.373169 TCTTCTTTGGCCAGACAGATGT 59.627 45.455 5.11 0.00 0.00 3.06
27 28 2.479566 TCTTTGGCCAGACAGATGTC 57.520 50.000 5.11 4.77 45.08 3.06
28 29 1.003580 TCTTTGGCCAGACAGATGTCC 59.996 52.381 5.11 0.00 45.85 4.02
35 36 1.403679 CCAGACAGATGTCCGACTCTC 59.596 57.143 9.31 0.00 45.85 3.20
46 47 2.383527 CGACTCTCGCAAAGCCCAC 61.384 63.158 0.00 0.00 31.14 4.61
49 50 2.032528 TCTCGCAAAGCCCACTGG 59.967 61.111 0.00 0.00 0.00 4.00
56 57 2.429927 AAAGCCCACTGGTTTGCTC 58.570 52.632 0.00 0.00 42.81 4.26
58 59 3.365265 GCCCACTGGTTTGCTCCG 61.365 66.667 0.00 0.00 0.00 4.63
59 60 2.429930 CCCACTGGTTTGCTCCGA 59.570 61.111 0.00 0.00 0.00 4.55
60 61 1.002134 CCCACTGGTTTGCTCCGAT 60.002 57.895 0.00 0.00 0.00 4.18
63 64 2.432444 CCACTGGTTTGCTCCGATTTA 58.568 47.619 0.00 0.00 0.00 1.40
64 65 2.161609 CCACTGGTTTGCTCCGATTTAC 59.838 50.000 0.00 0.00 0.00 2.01
65 66 2.811431 CACTGGTTTGCTCCGATTTACA 59.189 45.455 0.00 0.00 0.00 2.41
70 72 3.694566 GGTTTGCTCCGATTTACAGGAAT 59.305 43.478 0.00 0.00 35.90 3.01
75 77 3.869246 GCTCCGATTTACAGGAATTCGAA 59.131 43.478 10.67 0.00 41.35 3.71
87 89 1.392168 GAATTCGAATTCGGACACGCA 59.608 47.619 29.44 3.46 40.69 5.24
88 90 1.434555 ATTCGAATTCGGACACGCAA 58.565 45.000 26.47 12.54 40.69 4.85
102 104 2.677003 CGCAAAGGTGTTCGCGGAT 61.677 57.895 6.13 0.00 43.84 4.18
103 105 1.134694 GCAAAGGTGTTCGCGGATC 59.865 57.895 6.13 0.00 0.00 3.36
115 117 2.552768 CGGATCGATGCGGCAATG 59.447 61.111 29.01 2.17 38.00 2.82
138 140 5.128008 TGTGTTGGATATCTTACATCGTCCA 59.872 40.000 11.71 0.00 34.18 4.02
139 141 5.692204 GTGTTGGATATCTTACATCGTCCAG 59.308 44.000 11.71 0.00 37.10 3.86
146 148 3.162666 TCTTACATCGTCCAGACACCTT 58.837 45.455 0.00 0.00 0.00 3.50
152 154 1.067846 TCGTCCAGACACCTTGATTCG 60.068 52.381 0.00 0.00 0.00 3.34
180 182 1.644786 CGGGCGTTTTGAGGATCCAC 61.645 60.000 15.82 8.65 0.00 4.02
197 199 1.134098 CCACGTTGGAGATGCCCTAAT 60.134 52.381 0.00 0.00 40.96 1.73
214 225 2.605825 AATCCCCTCCCAACCTCATA 57.394 50.000 0.00 0.00 0.00 2.15
219 230 1.479389 CCCTCCCAACCTCATATTGGC 60.479 57.143 0.00 0.00 44.57 4.52
221 232 0.465460 TCCCAACCTCATATTGGCGC 60.465 55.000 0.00 0.00 44.57 6.53
251 262 1.936547 CACCAAGAAGATTAGGCGCTC 59.063 52.381 7.64 0.00 0.00 5.03
252 263 1.555075 ACCAAGAAGATTAGGCGCTCA 59.445 47.619 7.64 0.00 0.00 4.26
254 265 2.419297 CCAAGAAGATTAGGCGCTCACT 60.419 50.000 7.64 0.00 0.00 3.41
277 288 1.210155 GTCATCCTTGTGCCGCAAC 59.790 57.895 0.00 0.00 32.90 4.17
297 308 2.965147 GCAATGGCGCAACTCACGA 61.965 57.895 10.83 0.00 0.00 4.35
317 328 3.493129 CGAACGACATCCTTTCTTTGTCA 59.507 43.478 0.00 0.00 39.75 3.58
319 330 5.362556 AACGACATCCTTTCTTTGTCATG 57.637 39.130 0.00 0.00 39.75 3.07
320 331 3.753272 ACGACATCCTTTCTTTGTCATGG 59.247 43.478 0.00 0.00 39.75 3.66
335 346 6.662865 TTGTCATGGAATACACATTGGTTT 57.337 33.333 0.00 0.00 0.00 3.27
376 387 0.884704 TGGCTTTCTTGTCGTGAGGC 60.885 55.000 0.00 0.00 0.00 4.70
443 454 5.597806 TCCATTAGTACTTGCCAGATTACG 58.402 41.667 0.00 0.00 0.00 3.18
540 701 1.557371 TGGAAGCCAATGTACATCGGA 59.443 47.619 17.32 0.00 0.00 4.55
541 702 2.213499 GGAAGCCAATGTACATCGGAG 58.787 52.381 17.32 3.77 0.00 4.63
542 703 2.420129 GGAAGCCAATGTACATCGGAGT 60.420 50.000 17.32 2.67 0.00 3.85
543 704 3.181469 GGAAGCCAATGTACATCGGAGTA 60.181 47.826 17.32 0.00 0.00 2.59
544 705 4.439057 GAAGCCAATGTACATCGGAGTAA 58.561 43.478 17.32 0.00 0.00 2.24
606 883 0.610174 AGCTGACTCGAATGCTGGAA 59.390 50.000 0.00 0.00 34.19 3.53
612 889 4.183865 TGACTCGAATGCTGGAATAGTTG 58.816 43.478 0.00 0.00 0.00 3.16
624 901 5.677091 GCTGGAATAGTTGTCGCATTTCATT 60.677 40.000 0.00 0.00 0.00 2.57
669 946 1.114119 TTGCATGTTGCTTGCCCTGA 61.114 50.000 0.75 0.00 45.31 3.86
691 973 8.190784 CCTGAATATATGTGTTTTTCCTTCCAC 58.809 37.037 0.00 0.00 0.00 4.02
701 983 6.366604 GTGTTTTTCCTTCCACTTTTCGAAAA 59.633 34.615 21.35 21.35 0.00 2.29
712 994 6.049790 CCACTTTTCGAAAATTTTGGGGTTA 58.950 36.000 22.73 0.00 0.00 2.85
716 998 4.752661 TCGAAAATTTTGGGGTTACTCG 57.247 40.909 8.47 2.49 0.00 4.18
782 1068 5.818136 GCAATGGCATATATACGGAACAT 57.182 39.130 0.00 0.00 40.72 2.71
783 1069 6.918892 GCAATGGCATATATACGGAACATA 57.081 37.500 0.00 0.00 40.72 2.29
784 1070 7.315247 GCAATGGCATATATACGGAACATAA 57.685 36.000 0.00 0.00 40.72 1.90
785 1071 7.757526 GCAATGGCATATATACGGAACATAAA 58.242 34.615 0.00 0.00 40.72 1.40
786 1072 8.405531 GCAATGGCATATATACGGAACATAAAT 58.594 33.333 0.00 0.00 40.72 1.40
808 1094 6.771188 ATTTTCAACTTCAGACTCTGTACG 57.229 37.500 5.94 0.00 32.61 3.67
885 1308 3.935203 TCAGAGAATTTGATTCAGCGTCC 59.065 43.478 3.76 0.00 41.71 4.79
898 1321 2.302230 GCGTCCGAACCGAAAACGA 61.302 57.895 11.00 0.00 0.00 3.85
913 1336 0.869730 AACGAGTTGCCGCGTAAAAT 59.130 45.000 4.92 0.00 46.63 1.82
914 1337 0.441145 ACGAGTTGCCGCGTAAAATC 59.559 50.000 4.92 6.87 45.47 2.17
923 1354 1.330521 CCGCGTAAAATCATGAGGGTG 59.669 52.381 4.92 0.00 0.00 4.61
924 1355 2.276201 CGCGTAAAATCATGAGGGTGA 58.724 47.619 0.09 0.00 0.00 4.02
925 1356 2.675844 CGCGTAAAATCATGAGGGTGAA 59.324 45.455 0.09 0.00 0.00 3.18
926 1357 3.242413 CGCGTAAAATCATGAGGGTGAAG 60.242 47.826 0.09 0.00 0.00 3.02
927 1358 3.938963 GCGTAAAATCATGAGGGTGAAGA 59.061 43.478 0.09 0.00 0.00 2.87
928 1359 4.034510 GCGTAAAATCATGAGGGTGAAGAG 59.965 45.833 0.09 0.00 0.00 2.85
929 1360 5.419542 CGTAAAATCATGAGGGTGAAGAGA 58.580 41.667 0.09 0.00 0.00 3.10
930 1361 6.051717 CGTAAAATCATGAGGGTGAAGAGAT 58.948 40.000 0.09 0.00 0.00 2.75
931 1362 6.540189 CGTAAAATCATGAGGGTGAAGAGATT 59.460 38.462 0.09 0.00 0.00 2.40
979 1410 2.832643 ATGTGATCCCCAGCATTTGA 57.167 45.000 0.00 0.00 0.00 2.69
980 1411 2.133281 TGTGATCCCCAGCATTTGAG 57.867 50.000 0.00 0.00 0.00 3.02
981 1412 1.355381 TGTGATCCCCAGCATTTGAGT 59.645 47.619 0.00 0.00 0.00 3.41
982 1413 2.019984 GTGATCCCCAGCATTTGAGTC 58.980 52.381 0.00 0.00 0.00 3.36
983 1414 1.303309 GATCCCCAGCATTTGAGTCG 58.697 55.000 0.00 0.00 0.00 4.18
984 1415 0.911769 ATCCCCAGCATTTGAGTCGA 59.088 50.000 0.00 0.00 0.00 4.20
1290 1760 0.602905 AGTTCGGCACCTGTGTAAGC 60.603 55.000 0.00 0.00 0.00 3.09
1297 1770 1.073199 ACCTGTGTAAGCCTGCACC 59.927 57.895 0.81 0.00 37.36 5.01
1298 1771 1.376466 CCTGTGTAAGCCTGCACCT 59.624 57.895 0.81 0.00 37.36 4.00
1299 1772 0.613260 CCTGTGTAAGCCTGCACCTA 59.387 55.000 0.81 0.00 37.36 3.08
1300 1773 1.676014 CCTGTGTAAGCCTGCACCTAC 60.676 57.143 0.81 0.00 37.36 3.18
1301 1774 1.001974 CTGTGTAAGCCTGCACCTACA 59.998 52.381 0.81 0.00 37.36 2.74
1303 1776 1.002087 GTGTAAGCCTGCACCTACACT 59.998 52.381 15.86 0.00 36.04 3.55
1305 1778 0.036388 TAAGCCTGCACCTACACTGC 60.036 55.000 0.00 0.00 35.03 4.40
1306 1779 2.032528 GCCTGCACCTACACTGCA 59.967 61.111 0.00 0.00 42.42 4.41
1309 1782 2.032528 TGCACCTACACTGCAGCC 59.967 61.111 15.27 0.00 39.76 4.85
1310 1783 3.121030 GCACCTACACTGCAGCCG 61.121 66.667 15.27 8.03 34.56 5.52
1311 1784 3.121030 CACCTACACTGCAGCCGC 61.121 66.667 15.27 0.00 39.24 6.53
1312 1785 3.314331 ACCTACACTGCAGCCGCT 61.314 61.111 15.27 0.00 39.64 5.52
1313 1786 2.510238 CCTACACTGCAGCCGCTC 60.510 66.667 15.27 0.00 39.64 5.03
1314 1787 2.882777 CTACACTGCAGCCGCTCG 60.883 66.667 15.27 0.00 39.64 5.03
1336 1809 2.146342 CTCGCTCCATGTCACAACTTT 58.854 47.619 0.00 0.00 0.00 2.66
1355 1850 3.479269 CTTCGCTTCCGACGTGGC 61.479 66.667 0.00 0.00 44.30 5.01
1372 1867 1.136891 TGGCTATGATCGAGTGTGTGG 59.863 52.381 0.00 0.00 0.00 4.17
1452 1947 1.270252 CCAATTCACAGGTTGGTTGGC 60.270 52.381 0.00 0.00 39.97 4.52
1453 1948 1.411977 CAATTCACAGGTTGGTTGGCA 59.588 47.619 0.00 0.00 0.00 4.92
1454 1949 1.039856 ATTCACAGGTTGGTTGGCAC 58.960 50.000 0.00 0.00 0.00 5.01
1456 1951 1.821759 CACAGGTTGGTTGGCACGA 60.822 57.895 0.00 0.00 0.00 4.35
1457 1952 1.077357 ACAGGTTGGTTGGCACGAA 60.077 52.632 0.00 0.00 0.00 3.85
1458 1953 1.101049 ACAGGTTGGTTGGCACGAAG 61.101 55.000 0.00 0.00 0.00 3.79
1460 1955 0.818040 AGGTTGGTTGGCACGAAGTC 60.818 55.000 0.00 0.00 41.61 3.01
1462 1957 0.951558 GTTGGTTGGCACGAAGTCAT 59.048 50.000 0.00 0.00 41.61 3.06
1463 1958 1.069227 GTTGGTTGGCACGAAGTCATC 60.069 52.381 0.00 0.00 41.61 2.92
1464 1959 0.107643 TGGTTGGCACGAAGTCATCA 59.892 50.000 0.00 0.00 41.61 3.07
1466 1961 0.517316 GTTGGCACGAAGTCATCACC 59.483 55.000 0.00 0.00 41.61 4.02
1468 1963 2.100631 GGCACGAAGTCATCACCCG 61.101 63.158 0.00 0.00 41.61 5.28
1469 1964 1.374252 GCACGAAGTCATCACCCGT 60.374 57.895 0.00 0.00 41.61 5.28
1470 1965 1.352156 GCACGAAGTCATCACCCGTC 61.352 60.000 0.00 0.00 41.61 4.79
1495 1991 6.494893 TTTTTCGTTGCTGTAGATTGCTAT 57.505 33.333 0.00 0.00 0.00 2.97
1496 1992 7.603963 TTTTTCGTTGCTGTAGATTGCTATA 57.396 32.000 0.00 0.00 0.00 1.31
1497 1993 7.786178 TTTTCGTTGCTGTAGATTGCTATAT 57.214 32.000 0.00 0.00 0.00 0.86
1498 1994 6.769608 TTCGTTGCTGTAGATTGCTATATG 57.230 37.500 0.00 0.00 0.00 1.78
1499 1995 5.842907 TCGTTGCTGTAGATTGCTATATGT 58.157 37.500 0.00 0.00 0.00 2.29
1500 1996 5.691754 TCGTTGCTGTAGATTGCTATATGTG 59.308 40.000 0.00 0.00 0.00 3.21
1501 1997 5.691754 CGTTGCTGTAGATTGCTATATGTGA 59.308 40.000 0.00 0.00 0.00 3.58
1503 1999 7.095481 CGTTGCTGTAGATTGCTATATGTGATT 60.095 37.037 0.00 0.00 0.00 2.57
1505 2001 8.091385 TGCTGTAGATTGCTATATGTGATTTG 57.909 34.615 0.00 0.00 0.00 2.32
1506 2002 7.716560 TGCTGTAGATTGCTATATGTGATTTGT 59.283 33.333 0.00 0.00 0.00 2.83
1507 2003 9.208022 GCTGTAGATTGCTATATGTGATTTGTA 57.792 33.333 0.00 0.00 0.00 2.41
1529 2118 2.237143 TGGTAAGAGCAGTAGCAGCAAT 59.763 45.455 0.00 0.00 45.49 3.56
1530 2119 3.450817 TGGTAAGAGCAGTAGCAGCAATA 59.549 43.478 0.00 0.00 45.49 1.90
1533 2122 3.176552 AGAGCAGTAGCAGCAATACAG 57.823 47.619 0.00 0.00 45.49 2.74
1548 2162 5.640357 AGCAATACAGGTGCAATTTCATTTG 59.360 36.000 0.00 0.00 44.74 2.32
1565 2205 5.757886 TCATTTGATCAAACGAGGAACAAC 58.242 37.500 22.71 0.00 32.51 3.32
1588 2228 2.821969 AGGAATGCCATCAGTCAAACAC 59.178 45.455 0.00 0.00 38.92 3.32
1589 2229 2.821969 GGAATGCCATCAGTCAAACACT 59.178 45.455 0.00 0.00 38.92 3.55
1595 2235 4.065088 GCCATCAGTCAAACACTTCACTA 58.935 43.478 0.00 0.00 30.26 2.74
1599 2239 6.205464 CCATCAGTCAAACACTTCACTATGTT 59.795 38.462 0.00 0.00 40.76 2.71
1637 2277 4.355720 TGCTGAGGCAAGGGCAGG 62.356 66.667 0.00 0.00 46.36 4.85
1644 2284 2.270527 GCAAGGGCAGGACCTCTC 59.729 66.667 0.00 0.00 40.87 3.20
1645 2285 2.297129 GCAAGGGCAGGACCTCTCT 61.297 63.158 0.00 0.00 40.87 3.10
1648 2288 0.043940 AAGGGCAGGACCTCTCTCAT 59.956 55.000 0.00 0.00 40.87 2.90
1650 2290 0.915364 GGGCAGGACCTCTCTCATTT 59.085 55.000 0.00 0.00 39.10 2.32
1655 2295 4.041444 GGCAGGACCTCTCTCATTTCATAT 59.959 45.833 0.00 0.00 34.51 1.78
1656 2296 5.247110 GGCAGGACCTCTCTCATTTCATATA 59.753 44.000 0.00 0.00 34.51 0.86
1657 2297 6.239714 GGCAGGACCTCTCTCATTTCATATAA 60.240 42.308 0.00 0.00 34.51 0.98
1660 2300 8.646004 CAGGACCTCTCTCATTTCATATAAGAA 58.354 37.037 0.00 0.00 0.00 2.52
1662 2302 8.865090 GGACCTCTCTCATTTCATATAAGAAGA 58.135 37.037 0.00 0.00 0.00 2.87
1663 2303 9.912634 GACCTCTCTCATTTCATATAAGAAGAG 57.087 37.037 2.22 2.22 0.00 2.85
1669 2309 9.126151 TCTCATTTCATATAAGAAGAGAGTCGT 57.874 33.333 15.21 0.00 34.55 4.34
1670 2310 9.393249 CTCATTTCATATAAGAAGAGAGTCGTC 57.607 37.037 10.74 0.00 31.35 4.20
1671 2311 9.126151 TCATTTCATATAAGAAGAGAGTCGTCT 57.874 33.333 0.00 0.00 36.80 4.18
1674 2314 9.616156 TTTCATATAAGAAGAGAGTCGTCTAGT 57.384 33.333 0.00 0.00 34.18 2.57
1675 2315 8.596271 TCATATAAGAAGAGAGTCGTCTAGTG 57.404 38.462 0.00 0.00 34.18 2.74
1676 2316 5.744666 ATAAGAAGAGAGTCGTCTAGTGC 57.255 43.478 0.00 0.00 34.18 4.40
1677 2317 2.361789 AGAAGAGAGTCGTCTAGTGCC 58.638 52.381 0.00 0.00 33.54 5.01
1678 2318 1.402613 GAAGAGAGTCGTCTAGTGCCC 59.597 57.143 0.00 0.00 30.97 5.36
1679 2319 0.621609 AGAGAGTCGTCTAGTGCCCT 59.378 55.000 0.00 0.00 30.97 5.19
1680 2320 1.838715 AGAGAGTCGTCTAGTGCCCTA 59.161 52.381 0.00 0.00 30.97 3.53
1681 2321 2.158871 AGAGAGTCGTCTAGTGCCCTAG 60.159 54.545 0.00 0.00 41.82 3.02
1682 2322 1.560611 AGAGTCGTCTAGTGCCCTAGT 59.439 52.381 3.01 0.00 41.31 2.57
1683 2323 2.026075 AGAGTCGTCTAGTGCCCTAGTT 60.026 50.000 3.01 0.00 41.31 2.24
1684 2324 3.199508 AGAGTCGTCTAGTGCCCTAGTTA 59.800 47.826 3.01 0.00 41.31 2.24
1685 2325 3.944015 GAGTCGTCTAGTGCCCTAGTTAA 59.056 47.826 3.01 0.00 41.31 2.01
1686 2326 4.534797 AGTCGTCTAGTGCCCTAGTTAAT 58.465 43.478 3.01 0.00 41.31 1.40
1687 2327 4.954826 AGTCGTCTAGTGCCCTAGTTAATT 59.045 41.667 3.01 0.00 41.31 1.40
1688 2328 5.041940 GTCGTCTAGTGCCCTAGTTAATTG 58.958 45.833 3.01 0.00 41.31 2.32
1689 2329 4.951715 TCGTCTAGTGCCCTAGTTAATTGA 59.048 41.667 3.01 0.00 41.31 2.57
1690 2330 5.419788 TCGTCTAGTGCCCTAGTTAATTGAA 59.580 40.000 3.01 0.00 41.31 2.69
1691 2331 5.749109 CGTCTAGTGCCCTAGTTAATTGAAG 59.251 44.000 3.01 0.00 41.31 3.02
1692 2332 6.405508 CGTCTAGTGCCCTAGTTAATTGAAGA 60.406 42.308 3.01 0.00 41.31 2.87
1693 2333 7.328737 GTCTAGTGCCCTAGTTAATTGAAGAA 58.671 38.462 3.01 0.00 41.31 2.52
1694 2334 7.822822 GTCTAGTGCCCTAGTTAATTGAAGAAA 59.177 37.037 3.01 0.00 41.31 2.52
1695 2335 8.380099 TCTAGTGCCCTAGTTAATTGAAGAAAA 58.620 33.333 3.01 0.00 41.31 2.29
1696 2336 7.215719 AGTGCCCTAGTTAATTGAAGAAAAC 57.784 36.000 0.00 0.00 0.00 2.43
1697 2337 7.004691 AGTGCCCTAGTTAATTGAAGAAAACT 58.995 34.615 0.00 0.00 36.26 2.66
1698 2338 7.175119 AGTGCCCTAGTTAATTGAAGAAAACTC 59.825 37.037 0.00 0.00 34.23 3.01
1699 2339 6.148811 TGCCCTAGTTAATTGAAGAAAACTCG 59.851 38.462 0.00 0.00 34.23 4.18
1700 2340 6.403309 GCCCTAGTTAATTGAAGAAAACTCGG 60.403 42.308 0.00 0.00 35.59 4.63
1701 2341 6.653740 CCCTAGTTAATTGAAGAAAACTCGGT 59.346 38.462 6.43 0.00 34.58 4.69
1704 2344 7.562454 AGTTAATTGAAGAAAACTCGGTGAA 57.438 32.000 0.00 0.00 0.00 3.18
1712 2352 4.740268 AGAAAACTCGGTGAAAACCAAAC 58.260 39.130 0.00 0.00 0.00 2.93
1717 2357 4.263435 ACTCGGTGAAAACCAAACTACAA 58.737 39.130 0.00 0.00 0.00 2.41
1725 2365 6.526674 GTGAAAACCAAACTACAAACACTCAG 59.473 38.462 0.00 0.00 0.00 3.35
1731 2371 3.093717 ACTACAAACACTCAGGACACG 57.906 47.619 0.00 0.00 0.00 4.49
1732 2372 2.223971 ACTACAAACACTCAGGACACGG 60.224 50.000 0.00 0.00 0.00 4.94
1741 2381 2.154462 CTCAGGACACGGCAAGAAAAT 58.846 47.619 0.00 0.00 0.00 1.82
1743 2383 2.293122 TCAGGACACGGCAAGAAAATTG 59.707 45.455 0.00 0.00 0.00 2.32
1744 2384 1.613437 AGGACACGGCAAGAAAATTGG 59.387 47.619 0.00 0.00 0.00 3.16
1745 2385 1.611491 GGACACGGCAAGAAAATTGGA 59.389 47.619 0.00 0.00 0.00 3.53
1746 2386 2.351738 GGACACGGCAAGAAAATTGGAG 60.352 50.000 0.00 0.00 0.00 3.86
1747 2387 1.000274 ACACGGCAAGAAAATTGGAGC 60.000 47.619 0.00 0.00 0.00 4.70
1748 2388 1.270550 CACGGCAAGAAAATTGGAGCT 59.729 47.619 0.00 0.00 0.00 4.09
1750 2390 2.288395 ACGGCAAGAAAATTGGAGCTTG 60.288 45.455 0.00 0.00 40.40 4.01
1752 2392 2.613725 GGCAAGAAAATTGGAGCTTGGG 60.614 50.000 0.00 0.00 38.46 4.12
1753 2393 2.613725 GCAAGAAAATTGGAGCTTGGGG 60.614 50.000 0.00 0.00 38.46 4.96
1770 2410 2.971901 GGGGGTAGGGATGTAAATGG 57.028 55.000 0.00 0.00 0.00 3.16
1771 2411 1.203013 GGGGGTAGGGATGTAAATGGC 60.203 57.143 0.00 0.00 0.00 4.40
1772 2412 1.497286 GGGGTAGGGATGTAAATGGCA 59.503 52.381 0.00 0.00 0.00 4.92
1773 2413 2.583143 GGGTAGGGATGTAAATGGCAC 58.417 52.381 0.00 0.00 0.00 5.01
1774 2414 2.218603 GGTAGGGATGTAAATGGCACG 58.781 52.381 0.00 0.00 0.00 5.34
1775 2415 2.158871 GGTAGGGATGTAAATGGCACGA 60.159 50.000 0.00 0.00 0.00 4.35
1776 2416 3.496160 GGTAGGGATGTAAATGGCACGAT 60.496 47.826 0.00 0.00 0.00 3.73
1777 2417 3.297134 AGGGATGTAAATGGCACGATT 57.703 42.857 0.00 0.00 0.00 3.34
1778 2418 4.431416 AGGGATGTAAATGGCACGATTA 57.569 40.909 0.00 0.00 0.00 1.75
1779 2419 4.787551 AGGGATGTAAATGGCACGATTAA 58.212 39.130 0.00 0.00 0.00 1.40
1780 2420 4.578928 AGGGATGTAAATGGCACGATTAAC 59.421 41.667 0.00 0.00 0.00 2.01
1792 2432 2.241259 CGATTAACGGTGCCACAAAG 57.759 50.000 0.00 0.00 38.46 2.77
1793 2433 1.533731 CGATTAACGGTGCCACAAAGT 59.466 47.619 0.00 0.00 38.46 2.66
1794 2434 2.031508 CGATTAACGGTGCCACAAAGTT 60.032 45.455 0.00 2.62 38.46 2.66
1795 2435 3.561503 GATTAACGGTGCCACAAAGTTC 58.438 45.455 0.00 0.00 0.00 3.01
1796 2436 2.039818 TAACGGTGCCACAAAGTTCA 57.960 45.000 0.00 0.00 0.00 3.18
1797 2437 1.398692 AACGGTGCCACAAAGTTCAT 58.601 45.000 0.00 0.00 0.00 2.57
1798 2438 1.398692 ACGGTGCCACAAAGTTCATT 58.601 45.000 0.00 0.00 0.00 2.57
1799 2439 1.754226 ACGGTGCCACAAAGTTCATTT 59.246 42.857 0.00 0.00 0.00 2.32
1800 2440 2.952978 ACGGTGCCACAAAGTTCATTTA 59.047 40.909 0.00 0.00 0.00 1.40
1801 2441 3.381908 ACGGTGCCACAAAGTTCATTTAA 59.618 39.130 0.00 0.00 0.00 1.52
1802 2442 4.142138 ACGGTGCCACAAAGTTCATTTAAA 60.142 37.500 0.00 0.00 0.00 1.52
1803 2443 4.987912 CGGTGCCACAAAGTTCATTTAAAT 59.012 37.500 0.00 0.00 0.00 1.40
1804 2444 5.465056 CGGTGCCACAAAGTTCATTTAAATT 59.535 36.000 0.00 0.00 0.00 1.82
1805 2445 6.018343 CGGTGCCACAAAGTTCATTTAAATTT 60.018 34.615 0.00 0.00 35.84 1.82
1806 2446 7.466590 CGGTGCCACAAAGTTCATTTAAATTTT 60.467 33.333 0.00 0.00 33.29 1.82
1807 2447 8.187480 GGTGCCACAAAGTTCATTTAAATTTTT 58.813 29.630 0.00 0.00 33.29 1.94
1828 2468 6.371809 TTTTTGTTAGCTCGACAGTTCATT 57.628 33.333 0.00 0.00 0.00 2.57
1829 2469 6.371809 TTTTGTTAGCTCGACAGTTCATTT 57.628 33.333 0.00 0.00 0.00 2.32
1830 2470 6.371809 TTTGTTAGCTCGACAGTTCATTTT 57.628 33.333 0.00 0.00 0.00 1.82
1831 2471 5.591643 TGTTAGCTCGACAGTTCATTTTC 57.408 39.130 0.00 0.00 0.00 2.29
1832 2472 4.451096 TGTTAGCTCGACAGTTCATTTTCC 59.549 41.667 0.00 0.00 0.00 3.13
1833 2473 2.427506 AGCTCGACAGTTCATTTTCCC 58.572 47.619 0.00 0.00 0.00 3.97
1834 2474 2.151202 GCTCGACAGTTCATTTTCCCA 58.849 47.619 0.00 0.00 0.00 4.37
1835 2475 2.160417 GCTCGACAGTTCATTTTCCCAG 59.840 50.000 0.00 0.00 0.00 4.45
1836 2476 3.664107 CTCGACAGTTCATTTTCCCAGA 58.336 45.455 0.00 0.00 0.00 3.86
1837 2477 3.664107 TCGACAGTTCATTTTCCCAGAG 58.336 45.455 0.00 0.00 0.00 3.35
1838 2478 3.323691 TCGACAGTTCATTTTCCCAGAGA 59.676 43.478 0.00 0.00 0.00 3.10
1839 2479 4.065088 CGACAGTTCATTTTCCCAGAGAA 58.935 43.478 0.00 0.00 0.00 2.87
1840 2480 4.515191 CGACAGTTCATTTTCCCAGAGAAA 59.485 41.667 0.00 0.00 42.82 2.52
1850 2490 6.451064 TTTTCCCAGAGAAAAGTTCTTGAC 57.549 37.500 0.00 0.00 47.00 3.18
1851 2491 5.373812 TTCCCAGAGAAAAGTTCTTGACT 57.626 39.130 0.00 0.00 40.87 3.41
1852 2492 4.708177 TCCCAGAGAAAAGTTCTTGACTG 58.292 43.478 0.00 0.00 40.87 3.51
1853 2493 4.164221 TCCCAGAGAAAAGTTCTTGACTGT 59.836 41.667 0.00 0.00 40.87 3.55
1854 2494 4.513318 CCCAGAGAAAAGTTCTTGACTGTC 59.487 45.833 0.00 0.00 40.87 3.51
1855 2495 5.118990 CCAGAGAAAAGTTCTTGACTGTCA 58.881 41.667 6.36 6.36 40.87 3.58
1856 2496 5.236047 CCAGAGAAAAGTTCTTGACTGTCAG 59.764 44.000 10.77 0.00 40.87 3.51
1857 2497 6.045318 CAGAGAAAAGTTCTTGACTGTCAGA 58.955 40.000 10.77 8.02 40.87 3.27
1858 2498 6.019156 CAGAGAAAAGTTCTTGACTGTCAGAC 60.019 42.308 10.77 10.87 40.87 3.51
1859 2499 5.119694 AGAAAAGTTCTTGACTGTCAGACC 58.880 41.667 10.77 4.05 39.00 3.85
1860 2500 2.802787 AGTTCTTGACTGTCAGACCG 57.197 50.000 10.77 0.00 37.17 4.79
1861 2501 2.307768 AGTTCTTGACTGTCAGACCGA 58.692 47.619 10.77 4.19 37.17 4.69
1862 2502 2.894126 AGTTCTTGACTGTCAGACCGAT 59.106 45.455 10.77 0.00 37.17 4.18
1863 2503 4.079970 AGTTCTTGACTGTCAGACCGATA 58.920 43.478 10.77 0.00 37.17 2.92
1864 2504 4.523173 AGTTCTTGACTGTCAGACCGATAA 59.477 41.667 10.77 0.00 37.17 1.75
1865 2505 4.703645 TCTTGACTGTCAGACCGATAAG 57.296 45.455 10.77 3.28 0.00 1.73
1866 2506 4.079970 TCTTGACTGTCAGACCGATAAGT 58.920 43.478 10.77 0.00 0.00 2.24
1867 2507 3.850122 TGACTGTCAGACCGATAAGTG 57.150 47.619 6.36 0.00 0.00 3.16
1868 2508 2.492088 TGACTGTCAGACCGATAAGTGG 59.508 50.000 6.36 0.00 0.00 4.00
1869 2509 1.825474 ACTGTCAGACCGATAAGTGGG 59.175 52.381 6.91 0.00 0.00 4.61
1870 2510 0.535335 TGTCAGACCGATAAGTGGGC 59.465 55.000 0.00 0.00 33.30 5.36
1872 2512 1.207329 GTCAGACCGATAAGTGGGCTT 59.793 52.381 0.00 0.00 44.68 4.35
1873 2513 2.429610 GTCAGACCGATAAGTGGGCTTA 59.570 50.000 0.00 0.00 44.68 3.09
1874 2514 2.693591 TCAGACCGATAAGTGGGCTTAG 59.306 50.000 0.00 0.00 44.68 2.18
1875 2515 2.693591 CAGACCGATAAGTGGGCTTAGA 59.306 50.000 0.00 0.00 44.68 2.10
1876 2516 2.694109 AGACCGATAAGTGGGCTTAGAC 59.306 50.000 0.00 0.00 44.68 2.59
1877 2517 1.407979 ACCGATAAGTGGGCTTAGACG 59.592 52.381 0.00 0.00 40.17 4.18
1878 2518 1.269621 CCGATAAGTGGGCTTAGACGG 60.270 57.143 15.32 15.32 45.01 4.79
1879 2519 1.407979 CGATAAGTGGGCTTAGACGGT 59.592 52.381 0.00 0.00 40.17 4.83
1880 2520 2.543238 CGATAAGTGGGCTTAGACGGTC 60.543 54.545 0.00 0.00 40.17 4.79
1881 2521 2.226962 TAAGTGGGCTTAGACGGTCT 57.773 50.000 15.95 15.95 36.22 3.85
1882 2522 0.608640 AAGTGGGCTTAGACGGTCTG 59.391 55.000 20.58 6.03 32.27 3.51
1883 2523 1.448013 GTGGGCTTAGACGGTCTGC 60.448 63.158 20.58 15.37 0.00 4.26
1884 2524 1.609501 TGGGCTTAGACGGTCTGCT 60.610 57.895 20.58 0.00 0.00 4.24
1885 2525 1.153549 GGGCTTAGACGGTCTGCTG 60.154 63.158 20.58 10.89 0.00 4.41
1886 2526 1.153549 GGCTTAGACGGTCTGCTGG 60.154 63.158 20.58 8.60 0.00 4.85
1887 2527 1.592223 GCTTAGACGGTCTGCTGGT 59.408 57.895 20.58 0.00 0.00 4.00
1888 2528 0.815734 GCTTAGACGGTCTGCTGGTA 59.184 55.000 20.58 0.00 0.00 3.25
1889 2529 1.469423 GCTTAGACGGTCTGCTGGTAC 60.469 57.143 20.58 0.00 0.00 3.34
1890 2530 2.093106 CTTAGACGGTCTGCTGGTACT 58.907 52.381 20.58 0.00 0.00 2.73
1891 2531 2.211250 TAGACGGTCTGCTGGTACTT 57.789 50.000 20.58 0.00 0.00 2.24
1892 2532 2.211250 AGACGGTCTGCTGGTACTTA 57.789 50.000 10.41 0.00 0.00 2.24
1893 2533 2.093106 AGACGGTCTGCTGGTACTTAG 58.907 52.381 10.41 0.00 0.00 2.18
1894 2534 1.134560 GACGGTCTGCTGGTACTTAGG 59.865 57.143 0.00 0.00 0.00 2.69
1895 2535 0.460311 CGGTCTGCTGGTACTTAGGG 59.540 60.000 0.00 0.00 0.00 3.53
1896 2536 0.831307 GGTCTGCTGGTACTTAGGGG 59.169 60.000 0.00 0.00 0.00 4.79
1897 2537 1.569653 GTCTGCTGGTACTTAGGGGT 58.430 55.000 0.00 0.00 0.00 4.95
1898 2538 2.625087 GGTCTGCTGGTACTTAGGGGTA 60.625 54.545 0.00 0.00 0.00 3.69
1905 2545 4.471025 GCTGGTACTTAGGGGTAGGTTTAA 59.529 45.833 0.00 0.00 0.00 1.52
1908 2548 5.046663 TGGTACTTAGGGGTAGGTTTAAACG 60.047 44.000 12.07 0.00 0.00 3.60
1943 2583 3.540314 CAGGAGCTCTGCTATTTCACT 57.460 47.619 14.64 0.00 39.88 3.41
1944 2584 3.871485 CAGGAGCTCTGCTATTTCACTT 58.129 45.455 14.64 0.00 39.88 3.16
1945 2585 4.260170 CAGGAGCTCTGCTATTTCACTTT 58.740 43.478 14.64 0.00 39.88 2.66
1946 2586 4.094590 CAGGAGCTCTGCTATTTCACTTTG 59.905 45.833 14.64 0.00 39.88 2.77
2004 2652 6.388619 AAGGCCCTGTTAGATCTTTTTAGA 57.611 37.500 0.00 0.00 0.00 2.10
2005 2653 6.582929 AGGCCCTGTTAGATCTTTTTAGAT 57.417 37.500 0.00 0.00 0.00 1.98
2038 2686 1.493022 CCTCCCCGGTTCCATTAATCA 59.507 52.381 0.00 0.00 0.00 2.57
2039 2687 2.092103 CCTCCCCGGTTCCATTAATCAA 60.092 50.000 0.00 0.00 0.00 2.57
2040 2688 2.949644 CTCCCCGGTTCCATTAATCAAC 59.050 50.000 0.00 0.00 0.00 3.18
2041 2689 2.578940 TCCCCGGTTCCATTAATCAACT 59.421 45.455 0.00 0.00 0.00 3.16
2042 2690 2.949644 CCCCGGTTCCATTAATCAACTC 59.050 50.000 0.00 0.00 0.00 3.01
2097 2796 3.136123 CAGGGATTGCACGCAGGG 61.136 66.667 0.00 0.00 0.00 4.45
2100 2799 3.818787 GGATTGCACGCAGGGCAG 61.819 66.667 5.67 0.00 43.05 4.85
2101 2800 4.487412 GATTGCACGCAGGGCAGC 62.487 66.667 5.67 0.08 43.05 5.25
2118 2827 3.622612 GGCAGCAAAGTGAAAACAAACAT 59.377 39.130 0.00 0.00 0.00 2.71
2120 2829 4.548726 GCAGCAAAGTGAAAACAAACATCG 60.549 41.667 0.00 0.00 0.00 3.84
2126 2835 5.493133 AGTGAAAACAAACATCGCAACTA 57.507 34.783 0.00 0.00 0.00 2.24
2168 2948 2.024414 GTTCAGAAAGCAACACCAGGT 58.976 47.619 0.00 0.00 0.00 4.00
2170 2950 0.670162 CAGAAAGCAACACCAGGTGG 59.330 55.000 24.13 8.00 37.94 4.61
2226 3006 5.254339 CTTTCTTCAAGCTTCCAAACAGT 57.746 39.130 0.00 0.00 0.00 3.55
2286 3066 9.830186 AATAATACAGTATGATGACTACTCCCT 57.170 33.333 0.00 0.00 39.69 4.20
2287 3067 7.768807 AATACAGTATGATGACTACTCCCTC 57.231 40.000 0.00 0.00 39.69 4.30
2288 3068 4.475345 ACAGTATGATGACTACTCCCTCC 58.525 47.826 0.00 0.00 39.69 4.30
2289 3069 3.504134 CAGTATGATGACTACTCCCTCCG 59.496 52.174 0.00 0.00 39.69 4.63
2290 3070 2.757894 ATGATGACTACTCCCTCCGT 57.242 50.000 0.00 0.00 0.00 4.69
2291 3071 2.054232 TGATGACTACTCCCTCCGTC 57.946 55.000 0.00 0.00 0.00 4.79
2292 3072 1.320507 GATGACTACTCCCTCCGTCC 58.679 60.000 0.00 0.00 0.00 4.79
2293 3073 0.106116 ATGACTACTCCCTCCGTCCC 60.106 60.000 0.00 0.00 0.00 4.46
2294 3074 1.305623 GACTACTCCCTCCGTCCCA 59.694 63.158 0.00 0.00 0.00 4.37
2295 3075 0.106116 GACTACTCCCTCCGTCCCAT 60.106 60.000 0.00 0.00 0.00 4.00
2296 3076 1.144503 GACTACTCCCTCCGTCCCATA 59.855 57.143 0.00 0.00 0.00 2.74
2297 3077 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
2298 3078 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
2299 3079 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
2300 3080 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2301 3081 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2302 3082 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2303 3083 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2304 3084 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2305 3085 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2306 3086 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2307 3087 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
2308 3088 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
2309 3089 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
2310 3090 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
2311 3091 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
2312 3092 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
2313 3093 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
2314 3094 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
2315 3095 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
2316 3096 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
2317 3097 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
2318 3098 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
2321 3101 8.997621 AATATAAGAGCGTTTTTGACACTAGA 57.002 30.769 0.00 0.00 0.00 2.43
2322 3102 6.952935 ATAAGAGCGTTTTTGACACTAGAG 57.047 37.500 0.00 0.00 0.00 2.43
2341 3121 8.042515 CACTAGAGTAGTAGAGTACTGACCTTT 58.957 40.741 0.00 0.00 39.81 3.11
2359 3139 3.129988 CCTTTATTCTCCAGCTGCCAAAG 59.870 47.826 8.66 9.88 0.00 2.77
2397 3177 9.941664 CATCAGAGCTAAAATTAACACTATTGG 57.058 33.333 0.00 0.00 0.00 3.16
2403 3183 7.284716 AGCTAAAATTAACACTATTGGCTACCC 59.715 37.037 0.00 0.00 0.00 3.69
2406 3186 4.497291 TTAACACTATTGGCTACCCCTG 57.503 45.455 0.00 0.00 0.00 4.45
2487 3275 1.064463 GTTGAGATCCATCCCAGGCAA 60.064 52.381 0.00 0.00 0.00 4.52
2505 3293 3.595173 GCAACCTGGAAAGTTGTGTTTT 58.405 40.909 0.00 0.00 45.14 2.43
2507 3295 4.142924 GCAACCTGGAAAGTTGTGTTTTTG 60.143 41.667 0.00 0.00 45.14 2.44
2555 3343 2.476126 CAAAATTGGATTGCCAGGCA 57.524 45.000 11.22 11.22 46.91 4.75
2604 3392 1.002069 ATCTCACTTTGGCCCCATCA 58.998 50.000 0.00 0.00 0.00 3.07
2711 3510 8.200792 AGAGCTAGTAAAGATATTGGTGAGTTG 58.799 37.037 0.00 0.00 0.00 3.16
2940 3739 9.941664 CCAAATCATACTACTTGAATTGATGAC 57.058 33.333 3.66 0.00 36.52 3.06
2944 3743 9.761504 ATCATACTACTTGAATTGATGACTGAG 57.238 33.333 0.00 0.00 0.00 3.35
2945 3744 8.971073 TCATACTACTTGAATTGATGACTGAGA 58.029 33.333 0.00 0.00 0.00 3.27
2946 3745 9.761504 CATACTACTTGAATTGATGACTGAGAT 57.238 33.333 0.00 0.00 0.00 2.75
2947 3746 9.761504 ATACTACTTGAATTGATGACTGAGATG 57.238 33.333 0.00 0.00 0.00 2.90
2948 3747 7.046652 ACTACTTGAATTGATGACTGAGATGG 58.953 38.462 0.00 0.00 0.00 3.51
3378 4190 6.064060 TCATATCTGAAATAGCACCAAAGGG 58.936 40.000 0.00 0.00 41.29 3.95
3459 4271 8.318167 CACGAAATGTTAGAAAAGGTTTGAAAC 58.682 33.333 0.00 0.00 0.00 2.78
3468 4280 7.696992 AGAAAAGGTTTGAAACTGACAGTTA 57.303 32.000 20.85 3.95 37.47 2.24
3476 4288 3.740832 TGAAACTGACAGTTACATCTGCG 59.259 43.478 20.85 0.00 37.47 5.18
3734 4546 2.310349 TGGCTGGTATGGTTGGTTGTAT 59.690 45.455 0.00 0.00 0.00 2.29
3751 4565 5.873164 GGTTGTATCTACTAACTTGGGTGTG 59.127 44.000 0.00 0.00 0.00 3.82
3752 4566 6.461640 GTTGTATCTACTAACTTGGGTGTGT 58.538 40.000 0.00 0.00 0.00 3.72
3810 4624 4.569162 CCCGAATTACTTGTCGCAGAAATA 59.431 41.667 0.00 0.00 39.69 1.40
3871 4685 9.187996 TCCATTTCTATTACATTCATTTCTGCA 57.812 29.630 0.00 0.00 0.00 4.41
3887 4701 3.950397 TCTGCAACAAGTAATTCGGGAT 58.050 40.909 0.00 0.00 0.00 3.85
4144 4958 7.069986 TGGAGAGGCTACTGAGATTATAGTTT 58.930 38.462 0.00 0.00 0.00 2.66
4151 4965 7.713073 GGCTACTGAGATTATAGTTTGCTTCTT 59.287 37.037 0.00 0.00 0.00 2.52
4167 4981 2.038387 TCTTCCCTAAATTGCTCCGC 57.962 50.000 0.00 0.00 0.00 5.54
4232 5047 5.576384 CGATCTCTTATTCTTATGCAGGAGC 59.424 44.000 0.00 0.00 42.57 4.70
4248 5063 4.008330 CAGGAGCATGTTGAATCAGTTCT 58.992 43.478 0.00 0.00 35.33 3.01
4251 5066 3.087031 AGCATGTTGAATCAGTTCTGGG 58.913 45.455 0.00 0.00 35.33 4.45
4405 5220 1.588082 CTTTGATGCACAGGTGGGC 59.412 57.895 0.00 0.00 46.69 5.36
4700 5538 9.655769 CTATAATTGTTTCAGATTCCAATCACG 57.344 33.333 2.21 0.00 37.89 4.35
5010 6247 4.559862 ATCTCGGGAAGAAACTTGTCAT 57.440 40.909 0.00 0.00 37.61 3.06
5044 6281 1.133823 TCTGGCTGGTCTTTTTGCTCA 60.134 47.619 0.00 0.00 0.00 4.26
5125 6802 2.178769 CGCGTCAATGGCAATGCA 59.821 55.556 7.79 0.00 0.00 3.96
5128 6805 0.101759 GCGTCAATGGCAATGCAGAT 59.898 50.000 7.79 0.00 0.00 2.90
5170 6847 6.041979 TCTGATAATAGTAGTGCCTGAATGCA 59.958 38.462 0.00 0.00 39.37 3.96
5188 6868 2.095668 TGCAAAACATAAGGTAACCGCG 60.096 45.455 0.00 0.00 37.17 6.46
5323 7004 5.221126 GGGTGAAATATCAACAGATCAAGCC 60.221 44.000 0.00 0.00 45.56 4.35
5725 7406 3.576982 GGGTTATCATGTCCGAGGTATGA 59.423 47.826 11.80 11.80 35.52 2.15
5767 7449 1.595382 GGGATGATGCTCCGTTCCG 60.595 63.158 0.00 0.00 36.05 4.30
5860 7542 4.943705 TCAACATGAAAGGAATAGCAGGAC 59.056 41.667 0.00 0.00 0.00 3.85
5979 7661 5.189145 ACCCTTGTATAAGTAGGACAGTTGG 59.811 44.000 0.00 0.00 31.80 3.77
6018 7700 3.009723 CACCATTACCCACTCATGTGAC 58.990 50.000 0.94 0.00 46.55 3.67
6027 7709 1.395954 CACTCATGTGACAGCCGAATG 59.604 52.381 0.94 0.00 46.55 2.67
6037 7719 2.808543 GACAGCCGAATGATAACCCATC 59.191 50.000 0.00 0.00 0.00 3.51
6084 7766 5.694910 AGTTATCGCCAAGGTTTGTATATCG 59.305 40.000 0.00 0.00 0.00 2.92
6146 7828 2.536761 TTGGTTCCACTTACCACTCG 57.463 50.000 0.00 0.00 45.00 4.18
6355 8037 1.696336 AGGACTATGTATGGCTGGCAG 59.304 52.381 10.94 10.94 0.00 4.85
6454 8136 7.483307 TCTTGTTAATCATTAGATTGCTTGGC 58.517 34.615 1.21 0.00 44.03 4.52
6458 8140 4.866508 ATCATTAGATTGCTTGGCCATG 57.133 40.909 6.09 11.02 0.00 3.66
6520 8202 7.451255 TGTCAGATGATCTAATTTGGTTTGGTT 59.549 33.333 0.00 0.00 0.00 3.67
6526 8208 5.523438 TCTAATTTGGTTTGGTTGTGACC 57.477 39.130 0.00 0.00 46.71 4.02
6555 8237 2.677914 ACCATGATATCCTGACCGACA 58.322 47.619 9.36 0.00 0.00 4.35
6592 8275 6.378710 TTTCACCAACGATTATGAACACAA 57.621 33.333 0.00 0.00 30.99 3.33
6820 8504 6.094603 ACACAAGGCTGTTATCATCAGAATTC 59.905 38.462 0.00 0.00 35.20 2.17
6827 8511 5.418676 TGTTATCATCAGAATTCGACAGCA 58.581 37.500 0.00 0.00 0.00 4.41
7187 9170 3.607422 TTAATCAATTCAGCATCGCGG 57.393 42.857 6.13 0.00 0.00 6.46
7207 9190 5.109903 GCGGAGAACTAACTGAACATGTAT 58.890 41.667 0.00 0.00 0.00 2.29
7222 9205 8.180317 TGAACATGTATATACACGAACAACAG 57.820 34.615 17.69 3.04 39.30 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.015084 CTGTCTGGCCAAAGAAGAATGAT 58.985 43.478 7.01 0.00 0.00 2.45
2 3 3.415212 TCTGTCTGGCCAAAGAAGAATG 58.585 45.455 7.01 0.00 0.00 2.67
3 4 3.795688 TCTGTCTGGCCAAAGAAGAAT 57.204 42.857 7.01 0.00 0.00 2.40
4 5 3.181440 ACATCTGTCTGGCCAAAGAAGAA 60.181 43.478 17.28 0.00 0.00 2.52
5 6 2.373169 ACATCTGTCTGGCCAAAGAAGA 59.627 45.455 17.28 13.39 0.00 2.87
6 7 2.746362 GACATCTGTCTGGCCAAAGAAG 59.254 50.000 7.01 9.96 41.65 2.85
7 8 2.553028 GGACATCTGTCTGGCCAAAGAA 60.553 50.000 7.01 0.00 44.44 2.52
8 9 1.003580 GGACATCTGTCTGGCCAAAGA 59.996 52.381 7.01 10.99 44.44 2.52
10 11 0.321564 CGGACATCTGTCTGGCCAAA 60.322 55.000 7.01 0.00 45.43 3.28
11 12 1.191489 TCGGACATCTGTCTGGCCAA 61.191 55.000 16.94 0.00 45.43 4.52
12 13 1.609210 TCGGACATCTGTCTGGCCA 60.609 57.895 16.94 4.71 45.43 5.36
17 18 1.374560 CGAGAGTCGGACATCTGTCT 58.625 55.000 11.27 3.72 44.20 3.41
19 20 0.960861 TGCGAGAGTCGGACATCTGT 60.961 55.000 11.27 0.00 40.84 3.41
20 21 0.171231 TTGCGAGAGTCGGACATCTG 59.829 55.000 11.27 6.03 40.66 2.90
21 22 0.888619 TTTGCGAGAGTCGGACATCT 59.111 50.000 11.27 9.95 40.66 2.90
22 23 1.272781 CTTTGCGAGAGTCGGACATC 58.727 55.000 11.27 7.07 40.66 3.06
23 24 0.737715 GCTTTGCGAGAGTCGGACAT 60.738 55.000 11.27 0.00 40.66 3.06
24 25 1.372997 GCTTTGCGAGAGTCGGACA 60.373 57.895 11.27 0.00 40.66 4.02
25 26 2.095252 GGCTTTGCGAGAGTCGGAC 61.095 63.158 0.00 0.00 40.66 4.79
26 27 2.261671 GGCTTTGCGAGAGTCGGA 59.738 61.111 0.00 0.00 40.84 4.55
27 28 2.815647 GGGCTTTGCGAGAGTCGG 60.816 66.667 0.00 0.00 40.84 4.79
28 29 2.048222 TGGGCTTTGCGAGAGTCG 60.048 61.111 0.00 0.00 43.89 4.18
35 36 1.300080 CAAACCAGTGGGCTTTGCG 60.300 57.895 15.21 0.00 37.90 4.85
46 47 2.420022 CCTGTAAATCGGAGCAAACCAG 59.580 50.000 0.00 0.00 0.00 4.00
49 50 4.965119 ATTCCTGTAAATCGGAGCAAAC 57.035 40.909 0.00 0.00 0.00 2.93
56 57 5.432157 CGAATTCGAATTCCTGTAAATCGG 58.568 41.667 34.00 18.38 41.30 4.18
58 59 6.036735 TGTCCGAATTCGAATTCCTGTAAATC 59.963 38.462 34.00 19.98 41.30 2.17
59 60 5.878116 TGTCCGAATTCGAATTCCTGTAAAT 59.122 36.000 34.00 8.84 41.30 1.40
60 61 5.121142 GTGTCCGAATTCGAATTCCTGTAAA 59.879 40.000 34.00 18.40 41.30 2.01
63 64 3.000727 GTGTCCGAATTCGAATTCCTGT 58.999 45.455 34.00 11.62 41.30 4.00
64 65 2.029244 CGTGTCCGAATTCGAATTCCTG 59.971 50.000 34.00 27.11 41.30 3.86
65 66 2.268298 CGTGTCCGAATTCGAATTCCT 58.732 47.619 34.00 12.33 41.30 3.36
70 72 1.193650 CTTTGCGTGTCCGAATTCGAA 59.806 47.619 28.76 5.90 43.02 3.71
75 77 0.534203 ACACCTTTGCGTGTCCGAAT 60.534 50.000 0.00 0.00 43.50 3.34
87 89 3.870606 CGATCCGCGAACACCTTT 58.129 55.556 8.23 0.00 44.57 3.11
102 104 1.501292 CAACACATTGCCGCATCGA 59.499 52.632 0.00 0.00 0.00 3.59
103 105 1.514657 CCAACACATTGCCGCATCG 60.515 57.895 0.00 0.00 34.17 3.84
115 117 5.597806 TGGACGATGTAAGATATCCAACAC 58.402 41.667 9.30 4.59 33.34 3.32
138 140 0.966920 ACGTCCGAATCAAGGTGTCT 59.033 50.000 0.00 0.00 0.00 3.41
139 141 1.792006 AACGTCCGAATCAAGGTGTC 58.208 50.000 0.00 0.00 0.00 3.67
146 148 2.030401 CCCGCAAACGTCCGAATCA 61.030 57.895 5.01 0.00 37.70 2.57
152 154 3.472736 AAAACGCCCGCAAACGTCC 62.473 57.895 0.00 0.00 42.68 4.79
180 182 1.543429 GGGATTAGGGCATCTCCAACG 60.543 57.143 3.53 0.00 36.21 4.10
197 199 2.135189 CAATATGAGGTTGGGAGGGGA 58.865 52.381 0.00 0.00 0.00 4.81
251 262 3.383761 GGCACAAGGATGACAAAAAGTG 58.616 45.455 0.00 0.00 0.00 3.16
252 263 2.034558 CGGCACAAGGATGACAAAAAGT 59.965 45.455 0.00 0.00 0.00 2.66
254 265 1.269517 GCGGCACAAGGATGACAAAAA 60.270 47.619 0.00 0.00 0.00 1.94
294 305 3.463944 ACAAAGAAAGGATGTCGTTCGT 58.536 40.909 0.00 0.00 38.58 3.85
295 306 3.493129 TGACAAAGAAAGGATGTCGTTCG 59.507 43.478 0.00 0.00 44.95 3.95
297 308 4.216257 CCATGACAAAGAAAGGATGTCGTT 59.784 41.667 0.00 0.00 44.95 3.85
319 330 9.921637 TGAAAAGAATAAACCAATGTGTATTCC 57.078 29.630 10.55 0.00 46.43 3.01
335 346 6.878389 GCCAATGGGTGAAAATGAAAAGAATA 59.122 34.615 0.00 0.00 36.17 1.75
376 387 6.587990 ACTGACACGAGATCTAGTTTCAAATG 59.412 38.462 20.64 13.93 27.67 2.32
443 454 1.251251 AACCTGGCAAGCAAGTGATC 58.749 50.000 0.00 0.00 0.00 2.92
559 836 5.405571 CCCACTGCGTCAACATATAAGTATC 59.594 44.000 0.00 0.00 0.00 2.24
606 883 6.500684 ACTCAAATGAAATGCGACAACTAT 57.499 33.333 0.00 0.00 0.00 2.12
612 889 6.603095 AGTAAGAACTCAAATGAAATGCGAC 58.397 36.000 0.00 0.00 0.00 5.19
691 973 6.143278 CGAGTAACCCCAAAATTTTCGAAAAG 59.857 38.462 25.87 14.16 0.00 2.27
701 983 2.815503 CCGTTTCGAGTAACCCCAAAAT 59.184 45.455 0.00 0.00 0.00 1.82
760 1046 5.818136 ATGTTCCGTATATATGCCATTGC 57.182 39.130 0.00 0.00 38.26 3.56
772 1058 9.840427 CTGAAGTTGAAAATTTATGTTCCGTAT 57.160 29.630 0.00 0.00 0.00 3.06
773 1059 9.058174 TCTGAAGTTGAAAATTTATGTTCCGTA 57.942 29.630 0.00 0.00 0.00 4.02
774 1060 7.860872 GTCTGAAGTTGAAAATTTATGTTCCGT 59.139 33.333 0.00 0.00 0.00 4.69
775 1061 8.076178 AGTCTGAAGTTGAAAATTTATGTTCCG 58.924 33.333 0.00 0.00 0.00 4.30
776 1062 9.399403 GAGTCTGAAGTTGAAAATTTATGTTCC 57.601 33.333 0.00 0.00 0.00 3.62
778 1064 9.956720 CAGAGTCTGAAGTTGAAAATTTATGTT 57.043 29.630 15.46 0.00 32.44 2.71
779 1065 9.125026 ACAGAGTCTGAAGTTGAAAATTTATGT 57.875 29.630 26.86 0.00 35.18 2.29
782 1068 8.761497 CGTACAGAGTCTGAAGTTGAAAATTTA 58.239 33.333 26.86 0.80 35.18 1.40
783 1069 7.630924 CGTACAGAGTCTGAAGTTGAAAATTT 58.369 34.615 26.86 1.79 35.18 1.82
784 1070 6.292919 GCGTACAGAGTCTGAAGTTGAAAATT 60.293 38.462 26.86 2.00 35.18 1.82
785 1071 5.177696 GCGTACAGAGTCTGAAGTTGAAAAT 59.822 40.000 26.86 2.53 35.18 1.82
786 1072 4.506654 GCGTACAGAGTCTGAAGTTGAAAA 59.493 41.667 26.86 0.00 35.18 2.29
787 1073 4.049186 GCGTACAGAGTCTGAAGTTGAAA 58.951 43.478 26.86 0.00 35.18 2.69
808 1094 3.876274 TTCCATCTACAGAGACAGTGC 57.124 47.619 0.00 0.00 33.41 4.40
844 1130 8.988064 TCTCTGAAATAAAGTCTGACATGTAC 57.012 34.615 10.88 0.00 0.00 2.90
885 1308 0.383860 GGCAACTCGTTTTCGGTTCG 60.384 55.000 0.00 0.00 44.25 3.95
898 1321 2.080693 TCATGATTTTACGCGGCAACT 58.919 42.857 12.47 0.00 0.00 3.16
913 1336 4.023980 ACGTAATCTCTTCACCCTCATGA 58.976 43.478 0.00 0.00 0.00 3.07
914 1337 4.392921 ACGTAATCTCTTCACCCTCATG 57.607 45.455 0.00 0.00 0.00 3.07
923 1354 6.984740 CAATCTCTGCTACGTAATCTCTTC 57.015 41.667 0.00 0.00 0.00 2.87
979 1410 1.004440 GTGGCCTTCAGCTTCGACT 60.004 57.895 3.32 0.00 43.05 4.18
980 1411 2.383527 CGTGGCCTTCAGCTTCGAC 61.384 63.158 3.32 0.00 43.05 4.20
981 1412 2.048222 CGTGGCCTTCAGCTTCGA 60.048 61.111 3.32 0.00 43.05 3.71
982 1413 2.859273 ATCCGTGGCCTTCAGCTTCG 62.859 60.000 3.32 0.00 43.05 3.79
983 1414 1.078143 ATCCGTGGCCTTCAGCTTC 60.078 57.895 3.32 0.00 43.05 3.86
984 1415 1.377725 CATCCGTGGCCTTCAGCTT 60.378 57.895 3.32 0.00 43.05 3.74
1297 1770 2.882777 CGAGCGGCTGCAGTGTAG 60.883 66.667 21.93 3.51 46.23 2.74
1310 1783 4.521062 ACATGGAGCGAGGCGAGC 62.521 66.667 0.00 0.00 0.00 5.03
1311 1784 2.279120 GACATGGAGCGAGGCGAG 60.279 66.667 0.00 0.00 0.00 5.03
1312 1785 3.068064 TGACATGGAGCGAGGCGA 61.068 61.111 0.00 0.00 0.00 5.54
1313 1786 2.887568 GTGACATGGAGCGAGGCG 60.888 66.667 0.00 0.00 0.00 5.52
1314 1787 1.375908 TTGTGACATGGAGCGAGGC 60.376 57.895 0.00 0.00 0.00 4.70
1315 1788 0.036952 AGTTGTGACATGGAGCGAGG 60.037 55.000 0.00 0.00 0.00 4.63
1355 1850 3.983988 GCATACCACACACTCGATCATAG 59.016 47.826 0.00 0.00 0.00 2.23
1452 1947 0.243907 AGACGGGTGATGACTTCGTG 59.756 55.000 8.55 0.00 34.08 4.35
1453 1948 0.966920 AAGACGGGTGATGACTTCGT 59.033 50.000 4.37 4.37 35.67 3.85
1454 1949 2.080286 AAAGACGGGTGATGACTTCG 57.920 50.000 0.00 0.00 0.00 3.79
1476 1972 5.691754 CACATATAGCAATCTACAGCAACGA 59.308 40.000 0.00 0.00 0.00 3.85
1495 1991 7.564793 ACTGCTCTTACCATACAAATCACATA 58.435 34.615 0.00 0.00 0.00 2.29
1496 1992 6.418101 ACTGCTCTTACCATACAAATCACAT 58.582 36.000 0.00 0.00 0.00 3.21
1497 1993 5.804639 ACTGCTCTTACCATACAAATCACA 58.195 37.500 0.00 0.00 0.00 3.58
1498 1994 6.018669 GCTACTGCTCTTACCATACAAATCAC 60.019 42.308 0.00 0.00 36.03 3.06
1499 1995 6.049149 GCTACTGCTCTTACCATACAAATCA 58.951 40.000 0.00 0.00 36.03 2.57
1500 1996 6.049149 TGCTACTGCTCTTACCATACAAATC 58.951 40.000 0.00 0.00 40.48 2.17
1501 1997 5.989477 TGCTACTGCTCTTACCATACAAAT 58.011 37.500 0.00 0.00 40.48 2.32
1503 1999 4.680708 GCTGCTACTGCTCTTACCATACAA 60.681 45.833 0.00 0.00 40.48 2.41
1505 2001 3.181475 TGCTGCTACTGCTCTTACCATAC 60.181 47.826 0.00 0.00 40.48 2.39
1506 2002 3.031013 TGCTGCTACTGCTCTTACCATA 58.969 45.455 0.00 0.00 40.48 2.74
1507 2003 1.833630 TGCTGCTACTGCTCTTACCAT 59.166 47.619 0.00 0.00 40.48 3.55
1508 2004 1.266178 TGCTGCTACTGCTCTTACCA 58.734 50.000 0.00 0.00 40.48 3.25
1514 2103 2.208431 CCTGTATTGCTGCTACTGCTC 58.792 52.381 0.00 0.00 40.48 4.26
1529 2118 6.587206 TGATCAAATGAAATTGCACCTGTA 57.413 33.333 0.00 0.00 36.10 2.74
1530 2119 5.471556 TGATCAAATGAAATTGCACCTGT 57.528 34.783 0.00 0.00 36.10 4.00
1533 2122 5.404968 TCGTTTGATCAAATGAAATTGCACC 59.595 36.000 31.52 12.17 41.71 5.01
1539 2128 6.980593 TGTTCCTCGTTTGATCAAATGAAAT 58.019 32.000 32.32 0.00 43.35 2.17
1548 2162 2.412089 CCTCGTTGTTCCTCGTTTGATC 59.588 50.000 0.00 0.00 0.00 2.92
1565 2205 2.028420 TTGACTGATGGCATTCCTCG 57.972 50.000 0.00 0.00 0.00 4.63
1605 2245 4.035441 GCCTCAGCAAAGCATTTTGAAAAA 59.965 37.500 2.79 0.00 45.21 1.94
1606 2246 3.560896 GCCTCAGCAAAGCATTTTGAAAA 59.439 39.130 2.79 0.00 45.21 2.29
1607 2247 3.132925 GCCTCAGCAAAGCATTTTGAAA 58.867 40.909 2.79 0.00 45.21 2.69
1608 2248 2.758009 GCCTCAGCAAAGCATTTTGAA 58.242 42.857 2.79 0.00 45.21 2.69
1609 2249 2.443887 GCCTCAGCAAAGCATTTTGA 57.556 45.000 2.79 0.00 45.21 2.69
1623 2263 3.650950 GGTCCTGCCCTTGCCTCA 61.651 66.667 0.00 0.00 36.33 3.86
1624 2264 3.334054 AGGTCCTGCCCTTGCCTC 61.334 66.667 0.00 0.00 38.26 4.70
1637 2277 9.912634 CTCTTCTTATATGAAATGAGAGAGGTC 57.087 37.037 10.04 0.00 0.00 3.85
1644 2284 9.393249 GACGACTCTCTTCTTATATGAAATGAG 57.607 37.037 18.41 18.41 34.54 2.90
1645 2285 9.126151 AGACGACTCTCTTCTTATATGAAATGA 57.874 33.333 2.99 3.71 0.00 2.57
1648 2288 9.616156 ACTAGACGACTCTCTTCTTATATGAAA 57.384 33.333 0.00 0.00 0.00 2.69
1650 2290 7.171848 GCACTAGACGACTCTCTTCTTATATGA 59.828 40.741 0.00 0.00 0.00 2.15
1655 2295 3.940221 GGCACTAGACGACTCTCTTCTTA 59.060 47.826 0.00 0.00 0.00 2.10
1656 2296 2.750712 GGCACTAGACGACTCTCTTCTT 59.249 50.000 0.00 0.00 0.00 2.52
1657 2297 2.361789 GGCACTAGACGACTCTCTTCT 58.638 52.381 0.00 0.00 0.00 2.85
1660 2300 0.621609 AGGGCACTAGACGACTCTCT 59.378 55.000 0.00 0.00 0.00 3.10
1671 2311 8.161425 AGTTTTCTTCAATTAACTAGGGCACTA 58.839 33.333 0.00 0.00 0.00 2.74
1672 2312 7.004691 AGTTTTCTTCAATTAACTAGGGCACT 58.995 34.615 0.00 0.00 0.00 4.40
1673 2313 7.215719 AGTTTTCTTCAATTAACTAGGGCAC 57.784 36.000 0.00 0.00 0.00 5.01
1674 2314 6.148811 CGAGTTTTCTTCAATTAACTAGGGCA 59.851 38.462 0.00 0.00 31.41 5.36
1675 2315 6.403309 CCGAGTTTTCTTCAATTAACTAGGGC 60.403 42.308 7.45 0.00 38.76 5.19
1676 2316 6.653740 ACCGAGTTTTCTTCAATTAACTAGGG 59.346 38.462 15.70 10.47 43.43 3.53
1677 2317 7.386848 TCACCGAGTTTTCTTCAATTAACTAGG 59.613 37.037 11.81 11.81 44.18 3.02
1678 2318 8.306680 TCACCGAGTTTTCTTCAATTAACTAG 57.693 34.615 0.00 0.00 31.41 2.57
1679 2319 8.665643 TTCACCGAGTTTTCTTCAATTAACTA 57.334 30.769 0.00 0.00 31.41 2.24
1680 2320 7.562454 TTCACCGAGTTTTCTTCAATTAACT 57.438 32.000 0.00 0.00 33.78 2.24
1681 2321 8.529102 GTTTTCACCGAGTTTTCTTCAATTAAC 58.471 33.333 0.00 0.00 0.00 2.01
1682 2322 7.703197 GGTTTTCACCGAGTTTTCTTCAATTAA 59.297 33.333 0.00 0.00 31.60 1.40
1683 2323 7.197703 GGTTTTCACCGAGTTTTCTTCAATTA 58.802 34.615 0.00 0.00 31.60 1.40
1684 2324 6.040247 GGTTTTCACCGAGTTTTCTTCAATT 58.960 36.000 0.00 0.00 31.60 2.32
1685 2325 5.588240 GGTTTTCACCGAGTTTTCTTCAAT 58.412 37.500 0.00 0.00 31.60 2.57
1686 2326 4.989044 GGTTTTCACCGAGTTTTCTTCAA 58.011 39.130 0.00 0.00 31.60 2.69
1687 2327 4.625972 GGTTTTCACCGAGTTTTCTTCA 57.374 40.909 0.00 0.00 31.60 3.02
1699 2339 5.716094 AGTGTTTGTAGTTTGGTTTTCACC 58.284 37.500 0.00 0.00 44.56 4.02
1700 2340 6.383415 TGAGTGTTTGTAGTTTGGTTTTCAC 58.617 36.000 0.00 0.00 0.00 3.18
1701 2341 6.349777 CCTGAGTGTTTGTAGTTTGGTTTTCA 60.350 38.462 0.00 0.00 0.00 2.69
1704 2344 5.124936 GTCCTGAGTGTTTGTAGTTTGGTTT 59.875 40.000 0.00 0.00 0.00 3.27
1712 2352 2.404215 CCGTGTCCTGAGTGTTTGTAG 58.596 52.381 0.00 0.00 0.00 2.74
1717 2357 0.532862 CTTGCCGTGTCCTGAGTGTT 60.533 55.000 0.00 0.00 0.00 3.32
1725 2365 1.611491 TCCAATTTTCTTGCCGTGTCC 59.389 47.619 0.00 0.00 0.00 4.02
1731 2371 2.613725 CCCAAGCTCCAATTTTCTTGCC 60.614 50.000 0.00 0.00 35.76 4.52
1732 2372 2.613725 CCCCAAGCTCCAATTTTCTTGC 60.614 50.000 0.00 0.00 35.76 4.01
1752 2392 1.497286 TGCCATTTACATCCCTACCCC 59.503 52.381 0.00 0.00 0.00 4.95
1753 2393 2.583143 GTGCCATTTACATCCCTACCC 58.417 52.381 0.00 0.00 0.00 3.69
1756 2396 4.431416 AATCGTGCCATTTACATCCCTA 57.569 40.909 0.00 0.00 0.00 3.53
1759 2399 4.523813 CGTTAATCGTGCCATTTACATCC 58.476 43.478 0.00 0.00 34.52 3.51
1760 2400 4.034742 ACCGTTAATCGTGCCATTTACATC 59.965 41.667 0.00 0.00 37.94 3.06
1761 2401 3.942748 ACCGTTAATCGTGCCATTTACAT 59.057 39.130 0.00 0.00 37.94 2.29
1762 2402 3.125487 CACCGTTAATCGTGCCATTTACA 59.875 43.478 0.00 0.00 37.94 2.41
1763 2403 3.676540 CACCGTTAATCGTGCCATTTAC 58.323 45.455 0.00 0.00 37.94 2.01
1764 2404 2.096174 GCACCGTTAATCGTGCCATTTA 59.904 45.455 15.43 0.00 39.08 1.40
1765 2405 1.135517 GCACCGTTAATCGTGCCATTT 60.136 47.619 15.43 0.00 39.08 2.32
1766 2406 0.450184 GCACCGTTAATCGTGCCATT 59.550 50.000 15.43 0.00 39.08 3.16
1767 2407 2.094904 GCACCGTTAATCGTGCCAT 58.905 52.632 15.43 0.00 39.08 4.40
1768 2408 3.568686 GCACCGTTAATCGTGCCA 58.431 55.556 15.43 0.00 39.08 4.92
1770 2410 1.133869 GTGGCACCGTTAATCGTGC 59.866 57.895 17.20 17.20 41.77 5.34
1771 2411 0.869068 TTGTGGCACCGTTAATCGTG 59.131 50.000 16.26 1.54 37.94 4.35
1772 2412 1.533731 CTTTGTGGCACCGTTAATCGT 59.466 47.619 16.26 0.00 37.94 3.73
1773 2413 1.533731 ACTTTGTGGCACCGTTAATCG 59.466 47.619 16.26 0.13 39.52 3.34
1774 2414 3.003897 TGAACTTTGTGGCACCGTTAATC 59.996 43.478 16.26 7.26 0.00 1.75
1775 2415 2.952978 TGAACTTTGTGGCACCGTTAAT 59.047 40.909 16.26 0.00 0.00 1.40
1776 2416 2.366533 TGAACTTTGTGGCACCGTTAA 58.633 42.857 16.26 6.36 0.00 2.01
1777 2417 2.039818 TGAACTTTGTGGCACCGTTA 57.960 45.000 16.26 0.00 0.00 3.18
1778 2418 1.398692 ATGAACTTTGTGGCACCGTT 58.601 45.000 16.26 15.05 0.00 4.44
1779 2419 1.398692 AATGAACTTTGTGGCACCGT 58.601 45.000 16.26 6.83 0.00 4.83
1780 2420 2.507339 AAATGAACTTTGTGGCACCG 57.493 45.000 16.26 6.16 0.00 4.94
1781 2421 6.859420 AATTTAAATGAACTTTGTGGCACC 57.141 33.333 16.26 0.00 0.00 5.01
1805 2445 6.371809 AATGAACTGTCGAGCTAACAAAAA 57.628 33.333 3.28 0.00 0.00 1.94
1806 2446 6.371809 AAATGAACTGTCGAGCTAACAAAA 57.628 33.333 3.28 0.00 0.00 2.44
1807 2447 6.371809 AAAATGAACTGTCGAGCTAACAAA 57.628 33.333 3.28 0.00 0.00 2.83
1808 2448 5.049680 GGAAAATGAACTGTCGAGCTAACAA 60.050 40.000 3.28 0.00 0.00 2.83
1809 2449 4.451096 GGAAAATGAACTGTCGAGCTAACA 59.549 41.667 1.78 1.78 0.00 2.41
1810 2450 4.142881 GGGAAAATGAACTGTCGAGCTAAC 60.143 45.833 0.00 0.00 0.00 2.34
1811 2451 4.000988 GGGAAAATGAACTGTCGAGCTAA 58.999 43.478 0.00 0.00 0.00 3.09
1812 2452 3.007506 TGGGAAAATGAACTGTCGAGCTA 59.992 43.478 0.00 0.00 0.00 3.32
1813 2453 2.224523 TGGGAAAATGAACTGTCGAGCT 60.225 45.455 0.00 0.00 0.00 4.09
1814 2454 2.151202 TGGGAAAATGAACTGTCGAGC 58.849 47.619 0.00 0.00 0.00 5.03
1815 2455 3.664107 TCTGGGAAAATGAACTGTCGAG 58.336 45.455 0.00 0.00 0.00 4.04
1816 2456 3.323691 TCTCTGGGAAAATGAACTGTCGA 59.676 43.478 0.00 0.00 0.00 4.20
1817 2457 3.664107 TCTCTGGGAAAATGAACTGTCG 58.336 45.455 0.00 0.00 0.00 4.35
1818 2458 6.391227 TTTTCTCTGGGAAAATGAACTGTC 57.609 37.500 11.27 0.00 45.54 3.51
1828 2468 5.590259 CAGTCAAGAACTTTTCTCTGGGAAA 59.410 40.000 0.00 0.00 39.61 3.13
1829 2469 5.126067 CAGTCAAGAACTTTTCTCTGGGAA 58.874 41.667 0.00 0.00 39.61 3.97
1830 2470 4.164221 ACAGTCAAGAACTTTTCTCTGGGA 59.836 41.667 7.59 0.00 39.61 4.37
1831 2471 4.455606 ACAGTCAAGAACTTTTCTCTGGG 58.544 43.478 7.59 0.00 39.61 4.45
1832 2472 5.118990 TGACAGTCAAGAACTTTTCTCTGG 58.881 41.667 0.00 0.00 39.61 3.86
1833 2473 6.019156 GTCTGACAGTCAAGAACTTTTCTCTG 60.019 42.308 4.41 2.96 39.61 3.35
1834 2474 6.045955 GTCTGACAGTCAAGAACTTTTCTCT 58.954 40.000 4.41 0.00 39.61 3.10
1835 2475 5.235401 GGTCTGACAGTCAAGAACTTTTCTC 59.765 44.000 10.38 0.00 39.61 2.87
1836 2476 5.119694 GGTCTGACAGTCAAGAACTTTTCT 58.880 41.667 10.38 0.00 43.15 2.52
1837 2477 4.025647 CGGTCTGACAGTCAAGAACTTTTC 60.026 45.833 10.38 0.00 35.45 2.29
1838 2478 3.871594 CGGTCTGACAGTCAAGAACTTTT 59.128 43.478 10.38 0.00 35.45 2.27
1839 2479 3.132289 TCGGTCTGACAGTCAAGAACTTT 59.868 43.478 10.38 0.00 35.45 2.66
1840 2480 2.693591 TCGGTCTGACAGTCAAGAACTT 59.306 45.455 10.38 0.00 35.45 2.66
1841 2481 2.307768 TCGGTCTGACAGTCAAGAACT 58.692 47.619 10.38 0.00 39.44 3.01
1842 2482 2.795175 TCGGTCTGACAGTCAAGAAC 57.205 50.000 10.38 6.37 0.00 3.01
1843 2483 4.523173 ACTTATCGGTCTGACAGTCAAGAA 59.477 41.667 20.88 0.00 0.00 2.52
1844 2484 4.079970 ACTTATCGGTCTGACAGTCAAGA 58.920 43.478 20.88 1.88 0.00 3.02
1845 2485 4.169508 CACTTATCGGTCTGACAGTCAAG 58.830 47.826 10.38 14.08 0.00 3.02
1846 2486 3.056821 CCACTTATCGGTCTGACAGTCAA 60.057 47.826 10.38 3.94 0.00 3.18
1847 2487 2.492088 CCACTTATCGGTCTGACAGTCA 59.508 50.000 10.38 2.48 0.00 3.41
1848 2488 2.159226 CCCACTTATCGGTCTGACAGTC 60.159 54.545 10.38 0.00 0.00 3.51
1849 2489 1.825474 CCCACTTATCGGTCTGACAGT 59.175 52.381 10.38 1.01 0.00 3.55
1850 2490 1.471676 GCCCACTTATCGGTCTGACAG 60.472 57.143 10.38 5.82 0.00 3.51
1851 2491 0.535335 GCCCACTTATCGGTCTGACA 59.465 55.000 10.38 0.00 0.00 3.58
1852 2492 0.824759 AGCCCACTTATCGGTCTGAC 59.175 55.000 0.00 0.00 0.00 3.51
1853 2493 1.568504 AAGCCCACTTATCGGTCTGA 58.431 50.000 0.00 0.00 33.13 3.27
1854 2494 2.693591 TCTAAGCCCACTTATCGGTCTG 59.306 50.000 0.00 0.00 37.73 3.51
1855 2495 2.694109 GTCTAAGCCCACTTATCGGTCT 59.306 50.000 0.00 0.00 37.73 3.85
1856 2496 2.543238 CGTCTAAGCCCACTTATCGGTC 60.543 54.545 0.00 0.00 37.73 4.79
1857 2497 1.407979 CGTCTAAGCCCACTTATCGGT 59.592 52.381 0.00 0.00 37.73 4.69
1858 2498 1.269621 CCGTCTAAGCCCACTTATCGG 60.270 57.143 11.93 11.93 42.97 4.18
1859 2499 1.407979 ACCGTCTAAGCCCACTTATCG 59.592 52.381 0.00 0.00 37.73 2.92
1860 2500 2.694109 AGACCGTCTAAGCCCACTTATC 59.306 50.000 0.00 0.00 37.73 1.75
1861 2501 2.431057 CAGACCGTCTAAGCCCACTTAT 59.569 50.000 0.00 0.00 37.73 1.73
1862 2502 1.822990 CAGACCGTCTAAGCCCACTTA 59.177 52.381 0.00 0.00 37.33 2.24
1863 2503 0.608640 CAGACCGTCTAAGCCCACTT 59.391 55.000 0.00 0.00 40.07 3.16
1864 2504 1.889530 GCAGACCGTCTAAGCCCACT 61.890 60.000 0.00 0.00 0.00 4.00
1865 2505 1.448013 GCAGACCGTCTAAGCCCAC 60.448 63.158 0.00 0.00 0.00 4.61
1866 2506 1.609501 AGCAGACCGTCTAAGCCCA 60.610 57.895 0.00 0.00 0.00 5.36
1867 2507 1.153549 CAGCAGACCGTCTAAGCCC 60.154 63.158 0.00 0.00 0.00 5.19
1868 2508 1.153549 CCAGCAGACCGTCTAAGCC 60.154 63.158 0.00 0.00 0.00 4.35
1869 2509 0.815734 TACCAGCAGACCGTCTAAGC 59.184 55.000 0.00 1.60 0.00 3.09
1870 2510 2.093106 AGTACCAGCAGACCGTCTAAG 58.907 52.381 0.00 0.00 0.00 2.18
1871 2511 2.211250 AGTACCAGCAGACCGTCTAA 57.789 50.000 0.00 0.00 0.00 2.10
1872 2512 2.211250 AAGTACCAGCAGACCGTCTA 57.789 50.000 0.00 0.00 0.00 2.59
1873 2513 2.093106 CTAAGTACCAGCAGACCGTCT 58.907 52.381 0.00 0.00 0.00 4.18
1874 2514 1.134560 CCTAAGTACCAGCAGACCGTC 59.865 57.143 0.00 0.00 0.00 4.79
1875 2515 1.183549 CCTAAGTACCAGCAGACCGT 58.816 55.000 0.00 0.00 0.00 4.83
1876 2516 0.460311 CCCTAAGTACCAGCAGACCG 59.540 60.000 0.00 0.00 0.00 4.79
1877 2517 0.831307 CCCCTAAGTACCAGCAGACC 59.169 60.000 0.00 0.00 0.00 3.85
1878 2518 1.569653 ACCCCTAAGTACCAGCAGAC 58.430 55.000 0.00 0.00 0.00 3.51
1879 2519 2.358932 CCTACCCCTAAGTACCAGCAGA 60.359 54.545 0.00 0.00 0.00 4.26
1880 2520 2.040178 CCTACCCCTAAGTACCAGCAG 58.960 57.143 0.00 0.00 0.00 4.24
1881 2521 1.363629 ACCTACCCCTAAGTACCAGCA 59.636 52.381 0.00 0.00 0.00 4.41
1882 2522 2.171568 ACCTACCCCTAAGTACCAGC 57.828 55.000 0.00 0.00 0.00 4.85
1883 2523 6.409704 GTTTAAACCTACCCCTAAGTACCAG 58.590 44.000 7.12 0.00 0.00 4.00
1884 2524 5.046663 CGTTTAAACCTACCCCTAAGTACCA 60.047 44.000 12.66 0.00 0.00 3.25
1885 2525 5.186992 TCGTTTAAACCTACCCCTAAGTACC 59.813 44.000 12.66 0.00 0.00 3.34
1886 2526 6.280855 TCGTTTAAACCTACCCCTAAGTAC 57.719 41.667 12.66 0.00 0.00 2.73
1887 2527 6.926630 TTCGTTTAAACCTACCCCTAAGTA 57.073 37.500 12.66 0.00 0.00 2.24
1888 2528 5.823861 TTCGTTTAAACCTACCCCTAAGT 57.176 39.130 12.66 0.00 0.00 2.24
1889 2529 6.486253 GTTTCGTTTAAACCTACCCCTAAG 57.514 41.667 12.66 0.00 41.44 2.18
1905 2545 2.032071 CCCTCGCCTGGTTTCGTT 59.968 61.111 0.00 0.00 0.00 3.85
1908 2548 2.747855 CTGCCCTCGCCTGGTTTC 60.748 66.667 0.00 0.00 0.00 2.78
1986 2634 9.270640 CCTGATCATCTAAAAAGATCTAACAGG 57.729 37.037 0.00 0.00 39.07 4.00
2004 2652 2.537600 GGAGGTGCTCCCTGATCAT 58.462 57.895 0.00 0.00 46.51 2.45
2005 2653 4.056805 GGAGGTGCTCCCTGATCA 57.943 61.111 0.00 0.00 46.51 2.92
2039 2687 1.202891 GCCTGGTTGTAACTTGGGAGT 60.203 52.381 0.00 0.00 37.87 3.85
2040 2688 1.202879 TGCCTGGTTGTAACTTGGGAG 60.203 52.381 0.00 0.00 0.00 4.30
2041 2689 0.847373 TGCCTGGTTGTAACTTGGGA 59.153 50.000 0.00 3.85 0.00 4.37
2042 2690 1.698506 TTGCCTGGTTGTAACTTGGG 58.301 50.000 0.00 0.00 0.00 4.12
2097 2796 4.548726 CGATGTTTGTTTTCACTTTGCTGC 60.549 41.667 0.00 0.00 0.00 5.25
2098 2797 4.548726 GCGATGTTTGTTTTCACTTTGCTG 60.549 41.667 0.00 0.00 0.00 4.41
2099 2798 3.551485 GCGATGTTTGTTTTCACTTTGCT 59.449 39.130 0.00 0.00 0.00 3.91
2100 2799 3.305629 TGCGATGTTTGTTTTCACTTTGC 59.694 39.130 0.00 0.00 0.00 3.68
2101 2800 5.062058 AGTTGCGATGTTTGTTTTCACTTTG 59.938 36.000 0.00 0.00 0.00 2.77
2118 2827 5.267776 GTTGTTAGCAGTTTTTAGTTGCGA 58.732 37.500 0.00 0.00 42.47 5.10
2120 2829 5.344884 TGGTTGTTAGCAGTTTTTAGTTGC 58.655 37.500 0.00 0.00 38.09 4.17
2126 2835 4.157105 ACTCGTTGGTTGTTAGCAGTTTTT 59.843 37.500 0.00 0.00 32.55 1.94
2226 3006 4.830600 GGGTTCAACCTGTTTTCATTCCTA 59.169 41.667 6.51 0.00 38.64 2.94
2268 3048 3.138653 ACGGAGGGAGTAGTCATCATACT 59.861 47.826 0.00 0.00 36.19 2.12
2278 3058 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
2279 3059 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2280 3060 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2281 3061 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2282 3062 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2283 3063 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2284 3064 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
2285 3065 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
2286 3066 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
2287 3067 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
2288 3068 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
2289 3069 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
2290 3070 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
2291 3071 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
2292 3072 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
2296 3076 8.997621 TCTAGTGTCAAAAACGCTCTTATATT 57.002 30.769 0.00 0.00 45.69 1.28
2297 3077 8.251721 ACTCTAGTGTCAAAAACGCTCTTATAT 58.748 33.333 0.00 0.00 45.69 0.86
2298 3078 7.600065 ACTCTAGTGTCAAAAACGCTCTTATA 58.400 34.615 0.00 0.00 45.69 0.98
2299 3079 6.456501 ACTCTAGTGTCAAAAACGCTCTTAT 58.543 36.000 0.00 0.00 45.69 1.73
2300 3080 5.839621 ACTCTAGTGTCAAAAACGCTCTTA 58.160 37.500 0.00 0.00 45.69 2.10
2301 3081 4.694339 ACTCTAGTGTCAAAAACGCTCTT 58.306 39.130 0.00 0.00 45.69 2.85
2302 3082 4.323553 ACTCTAGTGTCAAAAACGCTCT 57.676 40.909 0.00 0.00 45.69 4.09
2303 3083 5.221130 ACTACTCTAGTGTCAAAAACGCTC 58.779 41.667 0.00 0.00 45.69 5.03
2305 3085 6.376978 TCTACTACTCTAGTGTCAAAAACGC 58.623 40.000 0.00 0.00 39.81 4.84
2306 3086 7.583230 ACTCTACTACTCTAGTGTCAAAAACG 58.417 38.462 0.00 0.00 39.81 3.60
2307 3087 9.824534 GTACTCTACTACTCTAGTGTCAAAAAC 57.175 37.037 0.00 0.00 39.81 2.43
2308 3088 9.790344 AGTACTCTACTACTCTAGTGTCAAAAA 57.210 33.333 0.00 0.00 39.81 1.94
2309 3089 9.217278 CAGTACTCTACTACTCTAGTGTCAAAA 57.783 37.037 0.00 0.00 39.81 2.44
2310 3090 8.591940 TCAGTACTCTACTACTCTAGTGTCAAA 58.408 37.037 0.00 0.00 39.81 2.69
2311 3091 8.034215 GTCAGTACTCTACTACTCTAGTGTCAA 58.966 40.741 0.00 0.00 39.81 3.18
2312 3092 7.363705 GGTCAGTACTCTACTACTCTAGTGTCA 60.364 44.444 0.00 0.00 39.81 3.58
2313 3093 6.980397 GGTCAGTACTCTACTACTCTAGTGTC 59.020 46.154 0.00 0.00 39.81 3.67
2314 3094 6.669154 AGGTCAGTACTCTACTACTCTAGTGT 59.331 42.308 2.57 2.57 39.81 3.55
2315 3095 7.116075 AGGTCAGTACTCTACTACTCTAGTG 57.884 44.000 0.00 0.00 39.81 2.74
2316 3096 7.738437 AAGGTCAGTACTCTACTACTCTAGT 57.262 40.000 0.00 0.00 42.68 2.57
2319 3099 9.617523 GAATAAAGGTCAGTACTCTACTACTCT 57.382 37.037 0.00 0.00 37.23 3.24
2320 3100 9.617523 AGAATAAAGGTCAGTACTCTACTACTC 57.382 37.037 0.00 0.00 37.23 2.59
2321 3101 9.617523 GAGAATAAAGGTCAGTACTCTACTACT 57.382 37.037 0.00 0.00 37.23 2.57
2322 3102 8.839343 GGAGAATAAAGGTCAGTACTCTACTAC 58.161 40.741 0.00 0.00 37.23 2.73
2341 3121 1.755179 GCTTTGGCAGCTGGAGAATA 58.245 50.000 17.12 0.00 46.27 1.75
2359 3139 2.094078 AGCTCTGATGTTGACTCTCTGC 60.094 50.000 0.00 0.00 0.00 4.26
2397 3177 0.837272 TATGAACTGGCAGGGGTAGC 59.163 55.000 20.34 1.77 0.00 3.58
2403 3183 2.026822 AGAAGTGGTATGAACTGGCAGG 60.027 50.000 20.34 0.58 0.00 4.85
2406 3186 2.027192 TGGAGAAGTGGTATGAACTGGC 60.027 50.000 0.00 0.00 0.00 4.85
2487 3275 4.882842 ACAAAAACACAACTTTCCAGGT 57.117 36.364 0.00 0.00 0.00 4.00
2492 3280 9.657121 TCAATGAAAAACAAAAACACAACTTTC 57.343 25.926 0.00 0.00 0.00 2.62
2494 3282 9.662545 CTTCAATGAAAAACAAAAACACAACTT 57.337 25.926 0.00 0.00 0.00 2.66
2544 3332 0.743097 GTTCATCCTGCCTGGCAATC 59.257 55.000 23.51 2.73 38.41 2.67
2546 3334 1.304381 GGTTCATCCTGCCTGGCAA 60.304 57.895 23.51 9.41 38.41 4.52
2550 3338 1.026718 GGTTCGGTTCATCCTGCCTG 61.027 60.000 0.00 0.00 0.00 4.85
2554 3342 2.185004 ACTTGGTTCGGTTCATCCTG 57.815 50.000 0.00 0.00 0.00 3.86
2555 3343 3.775316 AGATACTTGGTTCGGTTCATCCT 59.225 43.478 0.00 0.00 0.00 3.24
2604 3392 8.887264 TTTTGTTATAGATGGGTTATTGGTGT 57.113 30.769 0.00 0.00 0.00 4.16
2635 3433 6.992715 AGGGGTTATTTCTGTGATTAGATTCG 59.007 38.462 0.00 0.00 0.00 3.34
2711 3510 3.365832 CATTGACAGCGAATGCAATACC 58.634 45.455 0.00 0.00 46.23 2.73
2787 3586 9.730705 CATACTACAAGGGTAATCATCAATCAT 57.269 33.333 0.00 0.00 0.00 2.45
2788 3587 8.156820 CCATACTACAAGGGTAATCATCAATCA 58.843 37.037 0.00 0.00 0.00 2.57
2940 3739 1.270732 GGACTATGCCAGCCATCTCAG 60.271 57.143 0.00 0.00 35.34 3.35
2941 3740 0.761187 GGACTATGCCAGCCATCTCA 59.239 55.000 0.00 0.00 35.34 3.27
2942 3741 1.001860 GAGGACTATGCCAGCCATCTC 59.998 57.143 0.00 0.00 35.34 2.75
2943 3742 1.055040 GAGGACTATGCCAGCCATCT 58.945 55.000 0.00 0.00 35.34 2.90
2944 3743 0.761187 TGAGGACTATGCCAGCCATC 59.239 55.000 0.00 0.00 35.34 3.51
2945 3744 0.471617 GTGAGGACTATGCCAGCCAT 59.528 55.000 0.00 0.00 37.97 4.40
2946 3745 0.909133 TGTGAGGACTATGCCAGCCA 60.909 55.000 0.00 0.00 0.00 4.75
2947 3746 0.253044 TTGTGAGGACTATGCCAGCC 59.747 55.000 0.00 0.00 0.00 4.85
2948 3747 2.338577 ATTGTGAGGACTATGCCAGC 57.661 50.000 0.00 0.00 0.00 4.85
3273 4085 3.334583 AGCGGTGAATGAACAGTACAT 57.665 42.857 0.00 0.00 0.00 2.29
3283 4095 1.358877 TGTCGATCAAGCGGTGAATG 58.641 50.000 0.00 0.00 40.50 2.67
3288 4100 2.287668 GCTACTATGTCGATCAAGCGGT 60.288 50.000 0.00 0.00 0.00 5.68
3291 4103 5.226396 AGAATGCTACTATGTCGATCAAGC 58.774 41.667 0.00 0.00 0.00 4.01
3352 4164 7.255381 CCCTTTGGTGCTATTTCAGATATGAAG 60.255 40.741 2.58 0.00 0.00 3.02
3378 4190 2.896443 CAAGGCCTCCTCGGAGAC 59.104 66.667 5.23 2.40 44.53 3.36
3459 4271 2.919859 CACTCGCAGATGTAACTGTCAG 59.080 50.000 0.00 0.00 39.73 3.51
3476 4288 4.858935 TGAACAAATAAACAGCTGCACTC 58.141 39.130 15.27 0.00 0.00 3.51
3580 4392 5.587844 GCCATTCCATATGCAGGTAAGATAG 59.412 44.000 0.00 0.00 0.00 2.08
3734 4546 3.962063 TGTGACACACCCAAGTTAGTAGA 59.038 43.478 3.56 0.00 32.73 2.59
3751 4565 1.002468 GCCATTATGCGACCATGTGAC 60.002 52.381 0.00 0.00 32.85 3.67
3752 4566 1.308047 GCCATTATGCGACCATGTGA 58.692 50.000 0.00 0.00 32.85 3.58
3851 4665 9.013229 ACTTGTTGCAGAAATGAATGTAATAGA 57.987 29.630 0.00 0.00 0.00 1.98
3855 4669 9.979578 AATTACTTGTTGCAGAAATGAATGTAA 57.020 25.926 0.00 0.00 0.00 2.41
3871 4685 3.371595 CCCTCCATCCCGAATTACTTGTT 60.372 47.826 0.00 0.00 0.00 2.83
3887 4701 1.344438 CGCTTGCATATACTCCCTCCA 59.656 52.381 0.00 0.00 0.00 3.86
3942 4756 8.209802 TGAGGGATAACTTCAGTAAAGGTTAA 57.790 34.615 0.00 0.00 39.47 2.01
4144 4958 3.356290 GGAGCAATTTAGGGAAGAAGCA 58.644 45.455 0.00 0.00 0.00 3.91
4208 5022 5.576384 GCTCCTGCATAAGAATAAGAGATCG 59.424 44.000 0.00 0.00 39.41 3.69
4209 5023 6.462500 TGCTCCTGCATAAGAATAAGAGATC 58.538 40.000 0.00 0.00 45.31 2.75
4232 5047 5.458041 AAACCCAGAACTGATTCAACATG 57.542 39.130 3.19 0.00 37.29 3.21
4234 5049 4.825085 GGTAAACCCAGAACTGATTCAACA 59.175 41.667 3.19 0.00 37.29 3.33
4248 5063 0.996583 CCTGGCCTTAGGTAAACCCA 59.003 55.000 3.32 0.00 36.42 4.51
4251 5066 4.200092 CTGAATCCTGGCCTTAGGTAAAC 58.800 47.826 3.32 0.00 38.99 2.01
4405 5220 1.004918 AAAGACCTTCAGGCCGACG 60.005 57.895 0.00 0.00 39.32 5.12
4682 5520 6.481954 AGTAACGTGATTGGAATCTGAAAC 57.518 37.500 0.00 0.00 36.39 2.78
4700 5538 0.696501 TGAGAAGGGCCCCAAGTAAC 59.303 55.000 21.43 4.48 0.00 2.50
5010 6247 3.888930 CCAGCCAGAACTTCTAAAAACCA 59.111 43.478 0.00 0.00 0.00 3.67
5044 6281 7.352079 AGTGTTGAAGGAGACAAAAATTGAT 57.648 32.000 0.00 0.00 0.00 2.57
5170 6847 2.781923 ACCGCGGTTACCTTATGTTTT 58.218 42.857 28.70 0.00 0.00 2.43
5188 6868 6.478016 CGTACTAGCTGGGAACTTTAATAACC 59.522 42.308 0.85 0.00 0.00 2.85
5427 7108 1.629861 TCCTTGTGCCTGTGATCATGA 59.370 47.619 0.00 0.00 0.00 3.07
5767 7449 2.124411 TGGGCTCCTTACAGATTACCC 58.876 52.381 0.00 0.00 36.60 3.69
5860 7542 1.002773 ACTAACCAGGGTTACCAAGCG 59.997 52.381 6.82 0.00 40.13 4.68
6018 7700 2.810274 CTGATGGGTTATCATTCGGCTG 59.190 50.000 0.00 0.00 44.48 4.85
6027 7709 8.819974 CAAACATATTTTTGCTGATGGGTTATC 58.180 33.333 1.57 0.00 31.78 1.75
6037 7719 8.816640 ACTCCTTTACAAACATATTTTTGCTG 57.183 30.769 13.09 3.05 39.67 4.41
6097 7779 5.492895 TGGGAGAAACGAAGCAACATATAA 58.507 37.500 0.00 0.00 0.00 0.98
6146 7828 8.515414 AGCAAAAACATTTACTGGAGAACTATC 58.485 33.333 0.00 0.00 0.00 2.08
6355 8037 4.141233 AGACATAAATTTGCAATGGCCC 57.859 40.909 0.00 0.00 40.13 5.80
6363 8045 8.654230 TCTCAGATCTGTAGACATAAATTTGC 57.346 34.615 21.92 0.00 0.00 3.68
6454 8136 5.351458 TGATTGATAGTTCGACACTCATGG 58.649 41.667 3.94 0.00 36.88 3.66
6458 8140 6.535150 TGGAATTGATTGATAGTTCGACACTC 59.465 38.462 3.94 0.00 36.88 3.51
6520 8202 8.474025 GGATATCATGGTAAATTTTTGGTCACA 58.526 33.333 4.83 0.00 0.00 3.58
6526 8208 7.862372 CGGTCAGGATATCATGGTAAATTTTTG 59.138 37.037 16.79 0.00 0.00 2.44
6555 8237 5.237779 CGTTGGTGAAATTAGTGTGGTAACT 59.762 40.000 0.00 0.00 37.61 2.24
6592 8275 0.239347 GCGCACAAAAGATGCTCTGT 59.761 50.000 0.30 0.00 41.10 3.41
6742 8426 4.040339 TCTTTTGGCCCTTCCTTTTTGATC 59.960 41.667 0.00 0.00 35.26 2.92
6752 8436 6.266103 TGAATGATATCATCTTTTGGCCCTTC 59.734 38.462 18.44 9.04 35.10 3.46
6820 8504 0.100325 TTTTTGGCACTGTGCTGTCG 59.900 50.000 29.54 0.00 44.28 4.35
6841 8526 3.181501 TGTTCTTTGTTTTGCTCGGAGTG 60.182 43.478 6.90 0.00 0.00 3.51
6850 8536 5.931724 AGAGTTGGGTTTGTTCTTTGTTTTG 59.068 36.000 0.00 0.00 0.00 2.44
6851 8537 5.931724 CAGAGTTGGGTTTGTTCTTTGTTTT 59.068 36.000 0.00 0.00 0.00 2.43
7155 9133 4.202080 TGAATTGATTAATCTGCTGCCTGC 60.202 41.667 16.24 0.00 43.25 4.85
7168 9151 2.802247 CTCCGCGATGCTGAATTGATTA 59.198 45.455 8.23 0.00 0.00 1.75
7207 9190 2.067414 TGCGCTGTTGTTCGTGTATA 57.933 45.000 9.73 0.00 0.00 1.47
7222 9205 2.429739 GTTTGCTGGCTCTTGCGC 60.430 61.111 0.00 0.00 40.82 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.