Multiple sequence alignment - TraesCS6D01G310800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G310800 chr6D 100.000 4789 0 0 1 4789 420741515 420736727 0.000000e+00 8844.0
1 TraesCS6D01G310800 chr6D 85.294 68 5 5 2602 2668 51779466 51779403 1.110000e-06 65.8
2 TraesCS6D01G310800 chr6A 91.037 3124 153 50 1361 4411 563561434 563558365 0.000000e+00 4100.0
3 TraesCS6D01G310800 chr6A 87.126 1437 93 36 1 1383 563563014 563561616 0.000000e+00 1544.0
4 TraesCS6D01G310800 chr6A 96.970 33 0 1 4224 4256 151347679 151347710 2.000000e-03 54.7
5 TraesCS6D01G310800 chr6B 90.904 1858 124 24 2566 4390 633905631 633903786 0.000000e+00 2453.0
6 TraesCS6D01G310800 chr6B 92.502 1027 43 9 1594 2587 633906827 633905802 0.000000e+00 1439.0
7 TraesCS6D01G310800 chr6B 89.836 974 56 21 650 1608 633907787 633906842 0.000000e+00 1210.0
8 TraesCS6D01G310800 chr6B 87.179 156 16 3 4569 4721 633903717 633903563 1.770000e-39 174.0
9 TraesCS6D01G310800 chr5A 96.000 50 0 2 2602 2650 398722166 398722118 3.970000e-11 80.5
10 TraesCS6D01G310800 chr1B 96.000 50 1 1 2598 2646 329483555 329483604 3.970000e-11 80.5
11 TraesCS6D01G310800 chr7B 95.918 49 1 1 2602 2649 138653827 138653779 1.430000e-10 78.7
12 TraesCS6D01G310800 chr2B 94.231 52 2 1 2594 2644 745781674 745781623 1.430000e-10 78.7
13 TraesCS6D01G310800 chr1A 92.727 55 1 3 2601 2654 115948058 115948006 5.140000e-10 76.8
14 TraesCS6D01G310800 chr5D 92.593 54 0 3 2602 2652 40708584 40708532 1.850000e-09 75.0
15 TraesCS6D01G310800 chr2D 97.143 35 0 1 4224 4258 170620068 170620035 1.860000e-04 58.4
16 TraesCS6D01G310800 chr3A 96.875 32 1 0 4257 4288 522174761 522174792 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G310800 chr6D 420736727 420741515 4788 True 8844 8844 100.00000 1 4789 1 chr6D.!!$R2 4788
1 TraesCS6D01G310800 chr6A 563558365 563563014 4649 True 2822 4100 89.08150 1 4411 2 chr6A.!!$R1 4410
2 TraesCS6D01G310800 chr6B 633903563 633907787 4224 True 1319 2453 90.10525 650 4721 4 chr6B.!!$R1 4071

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 292 0.037697 AGCGCGAGTGGTTGTATTGA 60.038 50.000 12.1 0.0 0.00 2.57 F
921 982 0.320771 GTCATCACACCGCACCTCTT 60.321 55.000 0.0 0.0 0.00 2.85 F
925 986 1.374758 CACACCGCACCTCTTCCTC 60.375 63.158 0.0 0.0 0.00 3.71 F
2498 2836 1.510776 GATGCTCCTGCTACATGCTC 58.489 55.000 0.0 0.0 43.37 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1884 2194 0.178891 TCTCCTCCAACTTCCCAGCT 60.179 55.0 0.00 0.0 0.00 4.24 R
2255 2590 0.994995 CCTTCAGCAGATGTCGTTCG 59.005 55.0 0.00 0.0 0.00 3.95 R
2750 3281 1.028130 TGAAACGGCAGATGCAAACA 58.972 45.0 7.19 0.0 44.36 2.83 R
4431 5026 0.034337 TCTTCTTGCGGTTAGGCGTT 59.966 50.0 0.00 0.0 35.06 4.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.881273 TCATGGCTACTAAACGAAATGCAT 59.119 37.500 0.00 0.00 0.00 3.96
37 38 9.931210 GCTACTAAACGAAATGCATAATTTAGT 57.069 29.630 25.15 25.15 43.45 2.24
97 98 9.507329 AATACAAACAGACATTTGAGATGTAGT 57.493 29.630 5.30 0.00 41.28 2.73
102 103 6.524734 ACAGACATTTGAGATGTAGTGTTGA 58.475 36.000 0.00 0.00 29.87 3.18
106 107 7.879677 AGACATTTGAGATGTAGTGTTGAATGA 59.120 33.333 0.00 0.00 31.52 2.57
123 124 5.532557 TGAATGACCGTCTGACATCATATC 58.467 41.667 19.26 17.69 31.56 1.63
137 138 9.322773 CTGACATCATATCAGACACAAATAGTT 57.677 33.333 0.00 0.00 45.46 2.24
157 158 0.461339 TGTCCGCTTTAAGGATCGGC 60.461 55.000 4.94 2.30 41.49 5.54
168 169 0.811616 AGGATCGGCGTTGAAGATGC 60.812 55.000 6.85 0.00 39.65 3.91
187 188 1.124477 CCCTTAGCTGCTAGGAGGGG 61.124 65.000 28.03 22.71 42.73 4.79
189 190 1.337118 CTTAGCTGCTAGGAGGGGAG 58.663 60.000 12.99 0.62 0.00 4.30
191 192 0.480690 TAGCTGCTAGGAGGGGAGAG 59.519 60.000 13.67 0.00 0.00 3.20
196 197 0.186386 GCTAGGAGGGGAGAGCTACA 59.814 60.000 0.00 0.00 32.04 2.74
224 225 1.032114 GGCGAGGCCTTTGTAGCAAT 61.032 55.000 6.77 0.00 46.69 3.56
244 245 1.080569 CCCAACGGTTGCAATGCTC 60.081 57.895 15.31 0.00 0.00 4.26
249 250 2.616330 CGGTTGCAATGCTCGGTGT 61.616 57.895 6.82 0.00 0.00 4.16
254 255 0.250252 TGCAATGCTCGGTGTTCAGA 60.250 50.000 6.82 0.00 0.00 3.27
262 263 1.371267 CGGTGTTCAGAAGACGCGA 60.371 57.895 15.93 0.00 0.00 5.87
274 275 1.590259 GACGCGAAGATCAGGGAGC 60.590 63.158 15.93 0.00 0.00 4.70
279 280 1.299773 GAAGATCAGGGAGCGCGAG 60.300 63.158 12.10 0.00 0.00 5.03
282 283 3.781770 GATCAGGGAGCGCGAGTGG 62.782 68.421 12.10 0.00 0.00 4.00
284 285 4.379243 CAGGGAGCGCGAGTGGTT 62.379 66.667 12.10 0.00 0.00 3.67
285 286 4.379243 AGGGAGCGCGAGTGGTTG 62.379 66.667 12.10 0.00 0.00 3.77
286 287 4.681978 GGGAGCGCGAGTGGTTGT 62.682 66.667 12.10 0.00 0.00 3.32
287 288 2.260434 GGAGCGCGAGTGGTTGTA 59.740 61.111 12.10 0.00 0.00 2.41
288 289 1.153628 GGAGCGCGAGTGGTTGTAT 60.154 57.895 12.10 0.00 0.00 2.29
289 290 0.739813 GGAGCGCGAGTGGTTGTATT 60.740 55.000 12.10 0.00 0.00 1.89
290 291 0.370273 GAGCGCGAGTGGTTGTATTG 59.630 55.000 12.10 0.00 0.00 1.90
291 292 0.037697 AGCGCGAGTGGTTGTATTGA 60.038 50.000 12.10 0.00 0.00 2.57
292 293 0.094730 GCGCGAGTGGTTGTATTGAC 59.905 55.000 12.10 0.00 0.00 3.18
293 294 0.719465 CGCGAGTGGTTGTATTGACC 59.281 55.000 0.00 0.00 37.69 4.02
294 295 0.719465 GCGAGTGGTTGTATTGACCG 59.281 55.000 0.00 0.00 40.13 4.79
295 296 1.670674 GCGAGTGGTTGTATTGACCGA 60.671 52.381 0.00 0.00 40.13 4.69
323 324 1.735376 GATTACTGAGAGGGCGGCGA 61.735 60.000 12.98 0.00 0.00 5.54
333 334 3.692367 GGCGGCGAATCGTCATCG 61.692 66.667 12.98 6.75 42.99 3.84
377 378 1.064952 ACTTCAAGGCAAAACGAACCG 59.935 47.619 0.00 0.00 0.00 4.44
391 392 6.753107 AAACGAACCGGATCTCAAAATATT 57.247 33.333 9.46 0.00 0.00 1.28
392 393 5.986004 ACGAACCGGATCTCAAAATATTC 57.014 39.130 9.46 0.00 0.00 1.75
396 397 7.224167 ACGAACCGGATCTCAAAATATTCTAAC 59.776 37.037 9.46 0.00 0.00 2.34
413 414 6.648879 TTCTAACAAAGACCCTTTTCCATG 57.351 37.500 0.00 0.00 32.51 3.66
436 438 1.677552 CTCGGGCTAGGGTTTGTGT 59.322 57.895 0.00 0.00 0.00 3.72
476 481 1.404748 GGTAGAGGTAGTTGTCTCGCC 59.595 57.143 0.00 0.00 35.34 5.54
484 489 2.254546 AGTTGTCTCGCCATTCAACA 57.745 45.000 9.04 0.00 41.43 3.33
493 498 2.097954 TCGCCATTCAACATGATGCTTC 59.902 45.455 0.00 0.00 0.00 3.86
496 501 3.129813 GCCATTCAACATGATGCTTCAGA 59.870 43.478 8.40 0.00 34.73 3.27
514 519 6.527023 GCTTCAGACAGACATCATGAAAAATG 59.473 38.462 0.00 0.00 30.10 2.32
558 563 7.541743 TTAATTCGTATTTTTGTGCGTTGAG 57.458 32.000 0.00 0.00 0.00 3.02
563 568 4.501198 CGTATTTTTGTGCGTTGAGGTTTT 59.499 37.500 0.00 0.00 0.00 2.43
564 569 4.856115 ATTTTTGTGCGTTGAGGTTTTG 57.144 36.364 0.00 0.00 0.00 2.44
584 589 7.979537 GGTTTTGAAAAAGGTAAGTCTGTCAAT 59.020 33.333 0.00 0.00 0.00 2.57
585 590 9.366216 GTTTTGAAAAAGGTAAGTCTGTCAATT 57.634 29.630 0.00 0.00 0.00 2.32
626 632 1.769733 TTTTACTCAACCGACCGACG 58.230 50.000 0.00 0.00 42.18 5.12
643 649 1.340465 CGTGTAGCGTGATTGCGTC 59.660 57.895 0.00 0.00 40.67 5.19
648 654 0.037697 TAGCGTGATTGCGTCAAGGT 60.038 50.000 12.44 12.44 46.29 3.50
665 694 1.335132 GGTCCGAAGTATCCCTGGCA 61.335 60.000 0.00 0.00 0.00 4.92
702 736 2.497107 CAAAATTGCCATCCTAGCCG 57.503 50.000 0.00 0.00 0.00 5.52
720 754 1.448069 GATCCCCTTTCCTCGAGGC 59.552 63.158 27.39 5.34 32.74 4.70
721 755 1.003573 ATCCCCTTTCCTCGAGGCT 59.996 57.895 27.39 0.00 32.74 4.58
722 756 1.051556 ATCCCCTTTCCTCGAGGCTC 61.052 60.000 27.39 3.87 32.74 4.70
723 757 2.496817 CCCTTTCCTCGAGGCTCG 59.503 66.667 30.10 30.10 42.10 5.03
748 782 2.446036 GGTATCCACCCCGCTCCT 60.446 66.667 0.00 0.00 39.11 3.69
749 783 2.508751 GGTATCCACCCCGCTCCTC 61.509 68.421 0.00 0.00 39.11 3.71
750 784 2.122989 TATCCACCCCGCTCCTCC 60.123 66.667 0.00 0.00 0.00 4.30
751 785 3.768833 TATCCACCCCGCTCCTCCC 62.769 68.421 0.00 0.00 0.00 4.30
753 787 4.475444 CCACCCCGCTCCTCCCTA 62.475 72.222 0.00 0.00 0.00 3.53
754 788 2.365105 CACCCCGCTCCTCCCTAA 60.365 66.667 0.00 0.00 0.00 2.69
755 789 2.041819 ACCCCGCTCCTCCCTAAG 60.042 66.667 0.00 0.00 0.00 2.18
921 982 0.320771 GTCATCACACCGCACCTCTT 60.321 55.000 0.00 0.00 0.00 2.85
925 986 1.374758 CACACCGCACCTCTTCCTC 60.375 63.158 0.00 0.00 0.00 3.71
1186 1257 2.361230 GCCTCCCTTTGTTCCCGG 60.361 66.667 0.00 0.00 0.00 5.73
1202 1273 2.230992 TCCCGGATTTTGCAAGTTCATG 59.769 45.455 0.73 0.00 0.00 3.07
1359 1432 6.146510 AGGTTGGTTCGAAAACAAAGTTTTTC 59.853 34.615 15.53 2.80 40.61 2.29
1433 1704 5.737860 AGAGTTGATGTCATCTGCAATGTA 58.262 37.500 13.90 0.00 0.00 2.29
1444 1715 4.981806 TCTGCAATGTAATTTGGCTACC 57.018 40.909 0.00 0.00 31.22 3.18
1469 1740 2.499693 TCAATGAAGACGTGGCTCCATA 59.500 45.455 0.00 0.00 0.00 2.74
1803 2106 5.609533 TTACTACAGCCTAACCATTCTCC 57.390 43.478 0.00 0.00 0.00 3.71
1812 2115 4.331992 GCCTAACCATTCTCCGACTTTTAC 59.668 45.833 0.00 0.00 0.00 2.01
1835 2145 4.512484 GAGCTGAGTTAATGAGCCTCTTT 58.488 43.478 0.00 0.00 32.86 2.52
1884 2194 2.151202 GCTGCTAGCTGTGTTTGGTTA 58.849 47.619 21.03 0.00 38.45 2.85
1914 2224 1.944177 TGGAGGAGAGTCCAAGAAGG 58.056 55.000 0.00 0.00 44.01 3.46
1964 2274 4.525024 AGAATGGAATGCAGGAGAGAAAG 58.475 43.478 0.00 0.00 0.00 2.62
1989 2299 6.016777 GCCTACCAATAGAATTCTTGGATGTG 60.017 42.308 26.21 14.92 43.83 3.21
2069 2379 6.573664 TCCTGGAAACATTTGTACATTCAG 57.426 37.500 0.00 0.00 41.51 3.02
2126 2439 7.195374 ACTTAGAATGGCATCTGTACCTTAA 57.805 36.000 0.00 0.00 0.00 1.85
2231 2566 9.230122 TCATCTTTGTTGCAGAAATATACAGAA 57.770 29.630 0.00 0.00 0.00 3.02
2255 2590 3.326006 TGAGGCATGATCTGATAAGGACC 59.674 47.826 0.00 0.00 0.00 4.46
2288 2623 3.117888 TGCTGAAGGAGATGGGGTTTATC 60.118 47.826 0.00 0.00 0.00 1.75
2498 2836 1.510776 GATGCTCCTGCTACATGCTC 58.489 55.000 0.00 0.00 43.37 4.26
2529 2867 3.324930 CTGCAGCCTGGTCTGGGA 61.325 66.667 16.33 2.65 34.74 4.37
2530 2868 2.853542 TGCAGCCTGGTCTGGGAA 60.854 61.111 16.33 0.00 34.74 3.97
2589 3118 8.112016 ACTTGCTAAATCTTTCTTTAAGGGAC 57.888 34.615 0.00 0.00 34.46 4.46
2681 3211 5.807011 CCTGTTTTCTTGGTATAATGCTTGC 59.193 40.000 0.00 0.00 0.00 4.01
2750 3281 4.482990 TGCCTTTTCTTCTTTTGAGGGAT 58.517 39.130 0.00 0.00 0.00 3.85
2947 3478 1.168714 GGTGGACAGTCTTTGATGCC 58.831 55.000 0.00 0.00 0.00 4.40
3090 3621 1.471684 ACACGCGTCTAAGGTAAGGAG 59.528 52.381 9.86 0.00 0.00 3.69
3099 3630 5.505985 CGTCTAAGGTAAGGAGCATCACTAC 60.506 48.000 0.00 0.00 36.25 2.73
3107 3638 7.716998 AGGTAAGGAGCATCACTACAAATTATG 59.283 37.037 0.00 0.00 36.25 1.90
3113 3644 8.028938 GGAGCATCACTACAAATTATGTTGTTT 58.971 33.333 0.00 0.00 44.00 2.83
3193 3724 1.376553 GGAGAGTCCAGCAAGTGCC 60.377 63.158 0.00 0.00 43.38 5.01
3306 3837 5.700402 AACAGTGATACCAAGGATAAGCT 57.300 39.130 0.00 0.00 0.00 3.74
3328 3859 0.394762 TGCCTGCTGAGCTAAATGGG 60.395 55.000 5.83 0.00 0.00 4.00
3345 3876 1.492993 GGGAAAGGAGACCAGGCAGT 61.493 60.000 0.00 0.00 0.00 4.40
3361 3892 2.413453 GGCAGTGAATTCGAAGAGTGAC 59.587 50.000 3.35 1.83 38.43 3.67
3388 3919 1.447140 GCCTAATGTCGACCGTGCA 60.447 57.895 14.12 0.00 0.00 4.57
3533 4070 3.940209 TCATGAACATTTCTGTTGGGC 57.060 42.857 0.00 0.00 45.57 5.36
3667 4206 1.440708 CTCTGCAAGCCTCACTTCAG 58.559 55.000 0.00 0.00 36.04 3.02
3671 4210 0.039708 GCAAGCCTCACTTCAGCAAC 60.040 55.000 0.00 0.00 36.04 4.17
3681 4227 1.098050 CTTCAGCAACCCCATAGTGC 58.902 55.000 0.00 0.00 0.00 4.40
3737 4287 2.435059 GTTGCCTCTCCAGACCGC 60.435 66.667 0.00 0.00 0.00 5.68
3790 4340 2.887360 GCACAGGCGCCATTGATT 59.113 55.556 31.54 2.66 0.00 2.57
3833 4383 0.829333 AACATCCGCAGAGAGAGCAT 59.171 50.000 0.00 0.00 0.00 3.79
3852 4403 2.433318 AAGCTCCTGACGAAGCGC 60.433 61.111 0.00 0.00 0.00 5.92
3867 4418 1.523758 AGCGCGAGAAGAATTTGGTT 58.476 45.000 12.10 0.00 0.00 3.67
3916 4468 1.661341 AGCGAATCAGTCCAATCTGC 58.339 50.000 0.00 0.00 35.63 4.26
4127 4683 2.102578 ACTTTGGTGTTGCTTTGCTCT 58.897 42.857 0.00 0.00 0.00 4.09
4135 4691 1.068679 GTTGCTTTGCTCTCAGCTTCC 60.069 52.381 0.00 0.00 42.97 3.46
4154 4710 4.277515 TCCTAGGCTGATATGCATTGAC 57.722 45.455 3.54 0.00 34.04 3.18
4169 4725 4.744137 TGCATTGACATTGTTGTACTTTGC 59.256 37.500 0.00 0.00 35.79 3.68
4188 4769 4.882671 TGCTTCTCTTGTGTTTGAAGAC 57.117 40.909 0.00 0.00 38.42 3.01
4190 4771 3.846383 GCTTCTCTTGTGTTTGAAGACGC 60.846 47.826 0.00 0.00 38.42 5.19
4191 4772 2.210116 TCTCTTGTGTTTGAAGACGCC 58.790 47.619 0.00 0.00 0.00 5.68
4251 4832 3.178865 TCCCTCCGTCCTGAATTACTTT 58.821 45.455 0.00 0.00 0.00 2.66
4346 4937 4.766404 AACCTAGTTACACATTTGCTGC 57.234 40.909 0.00 0.00 0.00 5.25
4360 4951 6.148150 CACATTTGCTGCTATGGTTTTGAAAT 59.852 34.615 15.95 2.11 0.00 2.17
4417 5012 8.212317 TCAGATTGCATGAGAATTAAATTCGA 57.788 30.769 0.00 0.00 43.92 3.71
4420 5015 8.680903 AGATTGCATGAGAATTAAATTCGAAGT 58.319 29.630 3.35 0.00 43.92 3.01
4421 5016 9.294030 GATTGCATGAGAATTAAATTCGAAGTT 57.706 29.630 15.79 15.79 43.92 2.66
4422 5017 9.643693 ATTGCATGAGAATTAAATTCGAAGTTT 57.356 25.926 16.73 12.30 43.92 2.66
4423 5018 8.451687 TGCATGAGAATTAAATTCGAAGTTTG 57.548 30.769 16.73 7.06 43.92 2.93
4424 5019 7.541783 TGCATGAGAATTAAATTCGAAGTTTGG 59.458 33.333 16.73 0.00 43.92 3.28
4425 5020 7.542130 GCATGAGAATTAAATTCGAAGTTTGGT 59.458 33.333 16.73 1.75 43.92 3.67
4426 5021 9.410556 CATGAGAATTAAATTCGAAGTTTGGTT 57.589 29.630 16.73 8.88 43.92 3.67
4427 5022 9.981114 ATGAGAATTAAATTCGAAGTTTGGTTT 57.019 25.926 16.73 6.77 43.92 3.27
4428 5023 9.243637 TGAGAATTAAATTCGAAGTTTGGTTTG 57.756 29.630 16.73 0.00 43.92 2.93
4429 5024 8.072238 AGAATTAAATTCGAAGTTTGGTTTGC 57.928 30.769 16.73 0.94 43.92 3.68
4430 5025 7.708752 AGAATTAAATTCGAAGTTTGGTTTGCA 59.291 29.630 16.73 0.00 43.92 4.08
4431 5026 7.778470 ATTAAATTCGAAGTTTGGTTTGCAA 57.222 28.000 16.73 0.00 0.00 4.08
4432 5027 7.596749 TTAAATTCGAAGTTTGGTTTGCAAA 57.403 28.000 16.73 8.05 0.00 3.68
4433 5028 5.463499 AATTCGAAGTTTGGTTTGCAAAC 57.537 34.783 30.09 30.09 41.40 2.93
4434 5029 2.520979 TCGAAGTTTGGTTTGCAAACG 58.479 42.857 30.40 19.12 44.57 3.60
4435 5030 1.006494 CGAAGTTTGGTTTGCAAACGC 60.006 47.619 30.40 23.90 44.57 4.84
4436 5031 1.326245 GAAGTTTGGTTTGCAAACGCC 59.674 47.619 30.40 20.96 44.57 5.68
4437 5032 0.534873 AGTTTGGTTTGCAAACGCCT 59.465 45.000 30.40 20.88 44.57 5.52
4438 5033 1.751924 AGTTTGGTTTGCAAACGCCTA 59.248 42.857 30.40 15.70 44.57 3.93
4439 5034 2.166664 AGTTTGGTTTGCAAACGCCTAA 59.833 40.909 30.40 19.91 44.57 2.69
4440 5035 2.211353 TTGGTTTGCAAACGCCTAAC 57.789 45.000 30.40 18.50 39.77 2.34
4441 5036 0.386113 TGGTTTGCAAACGCCTAACC 59.614 50.000 30.40 19.24 40.68 2.85
4442 5037 0.662077 GGTTTGCAAACGCCTAACCG 60.662 55.000 30.40 0.00 39.77 4.44
4443 5038 1.008309 TTTGCAAACGCCTAACCGC 60.008 52.632 8.05 0.00 0.00 5.68
4444 5039 1.725557 TTTGCAAACGCCTAACCGCA 61.726 50.000 8.05 0.00 0.00 5.69
4445 5040 1.725557 TTGCAAACGCCTAACCGCAA 61.726 50.000 0.00 0.00 37.05 4.85
4446 5041 1.442017 GCAAACGCCTAACCGCAAG 60.442 57.895 0.00 0.00 0.00 4.01
4447 5042 1.847890 GCAAACGCCTAACCGCAAGA 61.848 55.000 0.00 0.00 43.02 3.02
4448 5043 0.589223 CAAACGCCTAACCGCAAGAA 59.411 50.000 0.00 0.00 43.02 2.52
4449 5044 0.872388 AAACGCCTAACCGCAAGAAG 59.128 50.000 0.00 0.00 43.02 2.85
4450 5045 0.034337 AACGCCTAACCGCAAGAAGA 59.966 50.000 0.00 0.00 43.02 2.87
4451 5046 0.389948 ACGCCTAACCGCAAGAAGAG 60.390 55.000 0.00 0.00 43.02 2.85
4452 5047 0.389948 CGCCTAACCGCAAGAAGAGT 60.390 55.000 0.00 0.00 43.02 3.24
4453 5048 1.809684 GCCTAACCGCAAGAAGAGTT 58.190 50.000 0.00 0.00 43.02 3.01
4454 5049 1.732809 GCCTAACCGCAAGAAGAGTTC 59.267 52.381 0.00 0.00 43.02 3.01
4455 5050 2.870435 GCCTAACCGCAAGAAGAGTTCA 60.870 50.000 0.00 0.00 43.02 3.18
4456 5051 2.996621 CCTAACCGCAAGAAGAGTTCAG 59.003 50.000 0.00 0.00 43.02 3.02
4457 5052 2.910688 AACCGCAAGAAGAGTTCAGA 57.089 45.000 0.00 0.00 43.02 3.27
4458 5053 2.910688 ACCGCAAGAAGAGTTCAGAA 57.089 45.000 0.00 0.00 43.02 3.02
4459 5054 3.194005 ACCGCAAGAAGAGTTCAGAAA 57.806 42.857 0.00 0.00 43.02 2.52
4460 5055 3.541632 ACCGCAAGAAGAGTTCAGAAAA 58.458 40.909 0.00 0.00 43.02 2.29
4461 5056 4.137543 ACCGCAAGAAGAGTTCAGAAAAT 58.862 39.130 0.00 0.00 43.02 1.82
4462 5057 4.023707 ACCGCAAGAAGAGTTCAGAAAATG 60.024 41.667 0.00 0.00 43.02 2.32
4463 5058 4.214119 CCGCAAGAAGAGTTCAGAAAATGA 59.786 41.667 0.00 0.00 43.02 2.57
4464 5059 5.380651 CGCAAGAAGAGTTCAGAAAATGAG 58.619 41.667 0.00 0.00 38.58 2.90
4465 5060 5.616424 CGCAAGAAGAGTTCAGAAAATGAGG 60.616 44.000 0.00 0.00 38.58 3.86
4466 5061 5.240403 GCAAGAAGAGTTCAGAAAATGAGGT 59.760 40.000 0.00 0.00 39.68 3.85
4467 5062 6.428159 GCAAGAAGAGTTCAGAAAATGAGGTA 59.572 38.462 0.00 0.00 39.68 3.08
4468 5063 7.041098 GCAAGAAGAGTTCAGAAAATGAGGTAA 60.041 37.037 0.00 0.00 39.68 2.85
4469 5064 8.502387 CAAGAAGAGTTCAGAAAATGAGGTAAG 58.498 37.037 0.00 0.00 39.68 2.34
4470 5065 7.164803 AGAAGAGTTCAGAAAATGAGGTAAGG 58.835 38.462 0.00 0.00 39.68 2.69
4471 5066 6.688073 AGAGTTCAGAAAATGAGGTAAGGA 57.312 37.500 0.00 0.00 39.68 3.36
4472 5067 7.264294 AGAGTTCAGAAAATGAGGTAAGGAT 57.736 36.000 0.00 0.00 39.68 3.24
4473 5068 8.380742 AGAGTTCAGAAAATGAGGTAAGGATA 57.619 34.615 0.00 0.00 39.68 2.59
4474 5069 8.826765 AGAGTTCAGAAAATGAGGTAAGGATAA 58.173 33.333 0.00 0.00 39.68 1.75
4475 5070 9.103861 GAGTTCAGAAAATGAGGTAAGGATAAG 57.896 37.037 0.00 0.00 39.68 1.73
4476 5071 8.049721 AGTTCAGAAAATGAGGTAAGGATAAGG 58.950 37.037 0.00 0.00 39.68 2.69
4477 5072 6.357367 TCAGAAAATGAGGTAAGGATAAGGC 58.643 40.000 0.00 0.00 32.77 4.35
4478 5073 5.237344 CAGAAAATGAGGTAAGGATAAGGCG 59.763 44.000 0.00 0.00 0.00 5.52
4479 5074 2.841442 ATGAGGTAAGGATAAGGCGC 57.159 50.000 0.00 0.00 0.00 6.53
4480 5075 0.756903 TGAGGTAAGGATAAGGCGCC 59.243 55.000 21.89 21.89 0.00 6.53
4481 5076 0.319641 GAGGTAAGGATAAGGCGCCG 60.320 60.000 23.20 0.00 0.00 6.46
4482 5077 1.047034 AGGTAAGGATAAGGCGCCGT 61.047 55.000 23.20 22.12 0.00 5.68
4483 5078 0.599466 GGTAAGGATAAGGCGCCGTC 60.599 60.000 20.96 18.93 0.00 4.79
4484 5079 0.599466 GTAAGGATAAGGCGCCGTCC 60.599 60.000 29.69 29.69 0.00 4.79
4485 5080 2.079020 TAAGGATAAGGCGCCGTCCG 62.079 60.000 29.97 0.00 35.89 4.79
4486 5081 4.963428 GGATAAGGCGCCGTCCGG 62.963 72.222 25.57 0.24 37.44 5.14
4502 5097 2.820037 GGCTGTAGCTGGCCGAAC 60.820 66.667 10.56 0.00 41.70 3.95
4503 5098 2.047274 GCTGTAGCTGGCCGAACA 60.047 61.111 0.00 0.00 38.21 3.18
4504 5099 1.671054 GCTGTAGCTGGCCGAACAA 60.671 57.895 0.00 0.00 38.21 2.83
4505 5100 1.912371 GCTGTAGCTGGCCGAACAAC 61.912 60.000 0.00 0.00 38.21 3.32
4506 5101 0.602638 CTGTAGCTGGCCGAACAACA 60.603 55.000 0.00 0.00 0.00 3.33
4507 5102 0.602638 TGTAGCTGGCCGAACAACAG 60.603 55.000 0.00 0.00 35.40 3.16
4514 5109 2.978010 CCGAACAACAGCCGCCTT 60.978 61.111 0.00 0.00 0.00 4.35
4515 5110 2.252260 CGAACAACAGCCGCCTTG 59.748 61.111 0.00 0.00 0.00 3.61
4516 5111 2.250939 CGAACAACAGCCGCCTTGA 61.251 57.895 5.58 0.00 0.00 3.02
4517 5112 1.577328 CGAACAACAGCCGCCTTGAT 61.577 55.000 5.58 0.00 0.00 2.57
4518 5113 1.448985 GAACAACAGCCGCCTTGATA 58.551 50.000 5.58 0.00 0.00 2.15
4519 5114 1.398390 GAACAACAGCCGCCTTGATAG 59.602 52.381 5.58 0.00 0.00 2.08
4520 5115 1.026718 ACAACAGCCGCCTTGATAGC 61.027 55.000 5.58 0.00 0.00 2.97
4521 5116 1.452108 AACAGCCGCCTTGATAGCC 60.452 57.895 0.00 0.00 0.00 3.93
4522 5117 2.969238 CAGCCGCCTTGATAGCCG 60.969 66.667 0.00 0.00 0.00 5.52
4523 5118 3.470888 AGCCGCCTTGATAGCCGT 61.471 61.111 0.00 0.00 0.00 5.68
4524 5119 2.513897 GCCGCCTTGATAGCCGTT 60.514 61.111 0.00 0.00 0.00 4.44
4525 5120 2.823829 GCCGCCTTGATAGCCGTTG 61.824 63.158 0.00 0.00 0.00 4.10
4526 5121 1.153449 CCGCCTTGATAGCCGTTGA 60.153 57.895 0.00 0.00 0.00 3.18
4527 5122 1.429148 CCGCCTTGATAGCCGTTGAC 61.429 60.000 0.00 0.00 0.00 3.18
4528 5123 0.460284 CGCCTTGATAGCCGTTGACT 60.460 55.000 0.00 0.00 0.00 3.41
4529 5124 1.291132 GCCTTGATAGCCGTTGACTC 58.709 55.000 0.00 0.00 0.00 3.36
4530 5125 1.134670 GCCTTGATAGCCGTTGACTCT 60.135 52.381 0.00 0.00 0.00 3.24
4531 5126 2.678190 GCCTTGATAGCCGTTGACTCTT 60.678 50.000 0.00 0.00 0.00 2.85
4532 5127 3.190874 CCTTGATAGCCGTTGACTCTTC 58.809 50.000 0.00 0.00 0.00 2.87
4533 5128 2.961526 TGATAGCCGTTGACTCTTCC 57.038 50.000 0.00 0.00 0.00 3.46
4534 5129 2.457598 TGATAGCCGTTGACTCTTCCT 58.542 47.619 0.00 0.00 0.00 3.36
4535 5130 2.427453 TGATAGCCGTTGACTCTTCCTC 59.573 50.000 0.00 0.00 0.00 3.71
4536 5131 2.217510 TAGCCGTTGACTCTTCCTCT 57.782 50.000 0.00 0.00 0.00 3.69
4537 5132 0.892063 AGCCGTTGACTCTTCCTCTC 59.108 55.000 0.00 0.00 0.00 3.20
4538 5133 0.892063 GCCGTTGACTCTTCCTCTCT 59.108 55.000 0.00 0.00 0.00 3.10
4539 5134 1.403514 GCCGTTGACTCTTCCTCTCTG 60.404 57.143 0.00 0.00 0.00 3.35
4540 5135 1.403514 CCGTTGACTCTTCCTCTCTGC 60.404 57.143 0.00 0.00 0.00 4.26
4541 5136 1.403514 CGTTGACTCTTCCTCTCTGCC 60.404 57.143 0.00 0.00 0.00 4.85
4542 5137 1.620819 GTTGACTCTTCCTCTCTGCCA 59.379 52.381 0.00 0.00 0.00 4.92
4543 5138 1.554836 TGACTCTTCCTCTCTGCCAG 58.445 55.000 0.00 0.00 0.00 4.85
4544 5139 0.175531 GACTCTTCCTCTCTGCCAGC 59.824 60.000 0.00 0.00 0.00 4.85
4579 5201 3.186047 CGTCGTTGGTGATCCGCC 61.186 66.667 0.00 0.00 36.30 6.13
4582 5204 2.124736 CGTTGGTGATCCGCCCAT 60.125 61.111 0.00 0.00 36.30 4.00
4599 5223 1.080722 ATCCCCAATGCCAGCCAAA 59.919 52.632 0.00 0.00 0.00 3.28
4601 5225 1.193462 TCCCCAATGCCAGCCAAAAG 61.193 55.000 0.00 0.00 0.00 2.27
4608 5232 4.366603 CCAGCCAAAAGGCTTTGC 57.633 55.556 14.19 13.43 44.07 3.68
4612 5236 0.394192 AGCCAAAAGGCTTTGCTTCC 59.606 50.000 14.19 1.14 43.30 3.46
4684 5308 4.598257 CGTTCCAGGAATCACGCT 57.402 55.556 4.80 0.00 0.00 5.07
4697 5321 4.119363 ACGCTGGCTGCCCATGAT 62.119 61.111 17.53 0.00 41.21 2.45
4714 5338 0.249911 GATCTGCGGGCCGTAATCTT 60.250 55.000 28.82 7.59 0.00 2.40
4715 5339 0.249911 ATCTGCGGGCCGTAATCTTC 60.250 55.000 28.82 9.29 0.00 2.87
4716 5340 1.144057 CTGCGGGCCGTAATCTTCT 59.856 57.895 28.82 0.00 0.00 2.85
4717 5341 1.153449 TGCGGGCCGTAATCTTCTG 60.153 57.895 28.82 0.00 0.00 3.02
4718 5342 1.153429 GCGGGCCGTAATCTTCTGT 60.153 57.895 28.82 0.00 0.00 3.41
4719 5343 1.152383 GCGGGCCGTAATCTTCTGTC 61.152 60.000 28.82 1.40 0.00 3.51
4722 5346 0.179054 GGCCGTAATCTTCTGTCCCC 60.179 60.000 0.00 0.00 0.00 4.81
4723 5347 0.529992 GCCGTAATCTTCTGTCCCCG 60.530 60.000 0.00 0.00 0.00 5.73
4724 5348 0.529992 CCGTAATCTTCTGTCCCCGC 60.530 60.000 0.00 0.00 0.00 6.13
4725 5349 0.529992 CGTAATCTTCTGTCCCCGCC 60.530 60.000 0.00 0.00 0.00 6.13
4726 5350 0.539986 GTAATCTTCTGTCCCCGCCA 59.460 55.000 0.00 0.00 0.00 5.69
4727 5351 1.065709 GTAATCTTCTGTCCCCGCCAA 60.066 52.381 0.00 0.00 0.00 4.52
4728 5352 0.404040 AATCTTCTGTCCCCGCCAAA 59.596 50.000 0.00 0.00 0.00 3.28
4729 5353 0.404040 ATCTTCTGTCCCCGCCAAAA 59.596 50.000 0.00 0.00 0.00 2.44
4730 5354 0.250727 TCTTCTGTCCCCGCCAAAAG 60.251 55.000 0.00 0.00 0.00 2.27
4731 5355 0.250727 CTTCTGTCCCCGCCAAAAGA 60.251 55.000 0.00 0.00 0.00 2.52
4732 5356 0.183971 TTCTGTCCCCGCCAAAAGAA 59.816 50.000 0.00 0.00 0.00 2.52
4733 5357 0.183971 TCTGTCCCCGCCAAAAGAAA 59.816 50.000 0.00 0.00 0.00 2.52
4734 5358 0.598065 CTGTCCCCGCCAAAAGAAAG 59.402 55.000 0.00 0.00 0.00 2.62
4735 5359 0.183971 TGTCCCCGCCAAAAGAAAGA 59.816 50.000 0.00 0.00 0.00 2.52
4736 5360 0.881796 GTCCCCGCCAAAAGAAAGAG 59.118 55.000 0.00 0.00 0.00 2.85
4737 5361 0.768622 TCCCCGCCAAAAGAAAGAGA 59.231 50.000 0.00 0.00 0.00 3.10
4738 5362 1.168714 CCCCGCCAAAAGAAAGAGAG 58.831 55.000 0.00 0.00 0.00 3.20
4739 5363 0.523519 CCCGCCAAAAGAAAGAGAGC 59.476 55.000 0.00 0.00 0.00 4.09
4740 5364 1.528129 CCGCCAAAAGAAAGAGAGCT 58.472 50.000 0.00 0.00 0.00 4.09
4741 5365 1.466558 CCGCCAAAAGAAAGAGAGCTC 59.533 52.381 5.27 5.27 0.00 4.09
4742 5366 2.421619 CGCCAAAAGAAAGAGAGCTCT 58.578 47.619 18.28 18.28 42.75 4.09
4743 5367 3.589988 CGCCAAAAGAAAGAGAGCTCTA 58.410 45.455 18.25 0.00 39.39 2.43
4744 5368 3.997021 CGCCAAAAGAAAGAGAGCTCTAA 59.003 43.478 18.25 0.00 39.39 2.10
4745 5369 4.633565 CGCCAAAAGAAAGAGAGCTCTAAT 59.366 41.667 18.25 5.56 39.39 1.73
4746 5370 5.220567 CGCCAAAAGAAAGAGAGCTCTAATC 60.221 44.000 18.25 14.78 39.39 1.75
4747 5371 5.879777 GCCAAAAGAAAGAGAGCTCTAATCT 59.120 40.000 18.25 16.79 39.39 2.40
4748 5372 6.183360 GCCAAAAGAAAGAGAGCTCTAATCTG 60.183 42.308 18.25 9.34 39.39 2.90
4749 5373 6.878389 CCAAAAGAAAGAGAGCTCTAATCTGT 59.122 38.462 18.25 12.46 39.39 3.41
4750 5374 7.064490 CCAAAAGAAAGAGAGCTCTAATCTGTC 59.936 40.741 18.25 14.35 39.39 3.51
4751 5375 5.852282 AGAAAGAGAGCTCTAATCTGTCC 57.148 43.478 18.25 0.91 39.39 4.02
4752 5376 4.649218 AGAAAGAGAGCTCTAATCTGTCCC 59.351 45.833 18.25 0.09 39.39 4.46
4753 5377 3.678965 AGAGAGCTCTAATCTGTCCCA 57.321 47.619 18.25 0.00 38.35 4.37
4754 5378 3.565307 AGAGAGCTCTAATCTGTCCCAG 58.435 50.000 18.25 0.00 38.35 4.45
4755 5379 2.627699 GAGAGCTCTAATCTGTCCCAGG 59.372 54.545 18.25 0.00 31.51 4.45
4756 5380 2.023501 AGAGCTCTAATCTGTCCCAGGT 60.024 50.000 16.50 0.00 31.51 4.00
4757 5381 2.102252 GAGCTCTAATCTGTCCCAGGTG 59.898 54.545 6.43 0.00 31.51 4.00
4758 5382 1.834263 GCTCTAATCTGTCCCAGGTGT 59.166 52.381 0.00 0.00 31.51 4.16
4759 5383 2.237392 GCTCTAATCTGTCCCAGGTGTT 59.763 50.000 0.00 0.00 31.51 3.32
4760 5384 3.866651 CTCTAATCTGTCCCAGGTGTTG 58.133 50.000 0.00 0.00 31.51 3.33
4761 5385 3.248024 TCTAATCTGTCCCAGGTGTTGT 58.752 45.455 0.00 0.00 31.51 3.32
4762 5386 4.422057 TCTAATCTGTCCCAGGTGTTGTA 58.578 43.478 0.00 0.00 31.51 2.41
4763 5387 4.841813 TCTAATCTGTCCCAGGTGTTGTAA 59.158 41.667 0.00 0.00 31.51 2.41
4764 5388 3.703001 ATCTGTCCCAGGTGTTGTAAG 57.297 47.619 0.00 0.00 31.51 2.34
4765 5389 2.404559 TCTGTCCCAGGTGTTGTAAGT 58.595 47.619 0.00 0.00 31.51 2.24
4766 5390 2.775384 TCTGTCCCAGGTGTTGTAAGTT 59.225 45.455 0.00 0.00 31.51 2.66
4767 5391 2.878406 CTGTCCCAGGTGTTGTAAGTTG 59.122 50.000 0.00 0.00 0.00 3.16
4768 5392 2.227194 GTCCCAGGTGTTGTAAGTTGG 58.773 52.381 0.00 0.00 0.00 3.77
4769 5393 1.847737 TCCCAGGTGTTGTAAGTTGGT 59.152 47.619 0.00 0.00 0.00 3.67
4770 5394 3.047115 TCCCAGGTGTTGTAAGTTGGTA 58.953 45.455 0.00 0.00 0.00 3.25
4771 5395 3.071892 TCCCAGGTGTTGTAAGTTGGTAG 59.928 47.826 0.00 0.00 0.00 3.18
4772 5396 3.181448 CCCAGGTGTTGTAAGTTGGTAGT 60.181 47.826 0.00 0.00 0.00 2.73
4773 5397 4.457466 CCAGGTGTTGTAAGTTGGTAGTT 58.543 43.478 0.00 0.00 0.00 2.24
4774 5398 4.274950 CCAGGTGTTGTAAGTTGGTAGTTG 59.725 45.833 0.00 0.00 0.00 3.16
4775 5399 4.879545 CAGGTGTTGTAAGTTGGTAGTTGT 59.120 41.667 0.00 0.00 0.00 3.32
4776 5400 5.355910 CAGGTGTTGTAAGTTGGTAGTTGTT 59.644 40.000 0.00 0.00 0.00 2.83
4777 5401 5.355910 AGGTGTTGTAAGTTGGTAGTTGTTG 59.644 40.000 0.00 0.00 0.00 3.33
4778 5402 5.124297 GGTGTTGTAAGTTGGTAGTTGTTGT 59.876 40.000 0.00 0.00 0.00 3.32
4779 5403 6.315891 GGTGTTGTAAGTTGGTAGTTGTTGTA 59.684 38.462 0.00 0.00 0.00 2.41
4780 5404 7.148272 GGTGTTGTAAGTTGGTAGTTGTTGTAA 60.148 37.037 0.00 0.00 0.00 2.41
4781 5405 7.906527 GTGTTGTAAGTTGGTAGTTGTTGTAAG 59.093 37.037 0.00 0.00 0.00 2.34
4782 5406 7.607223 TGTTGTAAGTTGGTAGTTGTTGTAAGT 59.393 33.333 0.00 0.00 0.00 2.24
4783 5407 8.453320 GTTGTAAGTTGGTAGTTGTTGTAAGTT 58.547 33.333 0.00 0.00 0.00 2.66
4784 5408 8.200364 TGTAAGTTGGTAGTTGTTGTAAGTTC 57.800 34.615 0.00 0.00 0.00 3.01
4785 5409 7.823310 TGTAAGTTGGTAGTTGTTGTAAGTTCA 59.177 33.333 0.00 0.00 0.00 3.18
4786 5410 6.920569 AGTTGGTAGTTGTTGTAAGTTCAG 57.079 37.500 0.00 0.00 0.00 3.02
4787 5411 5.820947 AGTTGGTAGTTGTTGTAAGTTCAGG 59.179 40.000 0.00 0.00 0.00 3.86
4788 5412 5.362105 TGGTAGTTGTTGTAAGTTCAGGT 57.638 39.130 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 5.207768 GCATTTCGTTTAGTAGCCATGATG 58.792 41.667 0.00 0.00 0.00 3.07
21 22 9.076596 GTGGTCTTTCACTAAATTATGCATTTC 57.923 33.333 3.54 0.00 36.43 2.17
75 76 7.194607 ACACTACATCTCAAATGTCTGTTTG 57.805 36.000 0.00 0.00 39.78 2.93
79 80 7.425577 TTCAACACTACATCTCAAATGTCTG 57.574 36.000 0.00 0.00 33.76 3.51
94 95 3.319689 TGTCAGACGGTCATTCAACACTA 59.680 43.478 11.27 0.00 0.00 2.74
97 98 2.900716 TGTCAGACGGTCATTCAACA 57.099 45.000 11.27 4.25 0.00 3.33
102 103 5.302823 TCTGATATGATGTCAGACGGTCATT 59.697 40.000 16.51 11.85 45.19 2.57
133 134 4.178540 CGATCCTTAAAGCGGACAAACTA 58.821 43.478 0.00 0.00 32.41 2.24
137 138 2.010043 GCCGATCCTTAAAGCGGACAA 61.010 52.381 7.99 0.00 46.29 3.18
157 158 1.667724 CAGCTAAGGGCATCTTCAACG 59.332 52.381 0.00 0.00 44.79 4.10
168 169 1.124477 CCCCTCCTAGCAGCTAAGGG 61.124 65.000 24.85 24.85 45.34 3.95
187 188 1.538075 GCCCTCGTCTATGTAGCTCTC 59.462 57.143 0.00 0.00 0.00 3.20
189 190 0.238817 CGCCCTCGTCTATGTAGCTC 59.761 60.000 0.00 0.00 0.00 4.09
191 192 0.238817 CTCGCCCTCGTCTATGTAGC 59.761 60.000 0.00 0.00 36.96 3.58
196 197 2.913060 GGCCTCGCCCTCGTCTAT 60.913 66.667 0.00 0.00 44.06 1.98
214 215 0.600557 CCGTTGGGCATTGCTACAAA 59.399 50.000 16.74 2.50 30.65 2.83
224 225 2.733301 CATTGCAACCGTTGGGCA 59.267 55.556 13.12 2.88 36.48 5.36
244 245 0.937699 TTCGCGTCTTCTGAACACCG 60.938 55.000 5.77 0.00 0.00 4.94
249 250 2.416027 CCTGATCTTCGCGTCTTCTGAA 60.416 50.000 5.77 0.00 0.00 3.02
254 255 0.457851 CTCCCTGATCTTCGCGTCTT 59.542 55.000 5.77 0.00 0.00 3.01
262 263 2.055042 ACTCGCGCTCCCTGATCTT 61.055 57.895 5.56 0.00 0.00 2.40
274 275 0.719465 GGTCAATACAACCACTCGCG 59.281 55.000 0.00 0.00 36.75 5.87
279 280 3.660865 AGAACTCGGTCAATACAACCAC 58.339 45.455 0.00 0.00 36.53 4.16
282 283 4.563524 CGAAGAACTCGGTCAATACAAC 57.436 45.455 0.00 0.00 44.20 3.32
294 295 4.202070 CCCTCTCAGTAATCCGAAGAACTC 60.202 50.000 0.00 0.00 0.00 3.01
295 296 3.702045 CCCTCTCAGTAATCCGAAGAACT 59.298 47.826 0.00 0.00 0.00 3.01
309 310 2.279784 GATTCGCCGCCCTCTCAG 60.280 66.667 0.00 0.00 0.00 3.35
311 312 4.208686 ACGATTCGCCGCCCTCTC 62.209 66.667 5.86 0.00 0.00 3.20
323 324 0.537188 AACTCTGCCCGATGACGATT 59.463 50.000 0.00 0.00 42.66 3.34
333 334 2.587522 AGAAAAAGGTCAACTCTGCCC 58.412 47.619 0.00 0.00 0.00 5.36
346 347 7.897800 CGTTTTGCCTTGAAGTTTTAGAAAAAG 59.102 33.333 0.00 0.00 0.00 2.27
351 352 5.821516 TCGTTTTGCCTTGAAGTTTTAGA 57.178 34.783 0.00 0.00 0.00 2.10
391 392 5.768164 GTCATGGAAAAGGGTCTTTGTTAGA 59.232 40.000 0.00 0.00 0.00 2.10
392 393 5.334879 CGTCATGGAAAAGGGTCTTTGTTAG 60.335 44.000 0.00 0.00 0.00 2.34
396 397 2.351738 GCGTCATGGAAAAGGGTCTTTG 60.352 50.000 0.00 0.00 0.00 2.77
476 481 5.123344 TCTGTCTGAAGCATCATGTTGAATG 59.877 40.000 7.98 0.00 34.37 2.67
484 489 4.482952 TGATGTCTGTCTGAAGCATCAT 57.517 40.909 8.20 0.00 40.35 2.45
493 498 6.072342 TGACCATTTTTCATGATGTCTGTCTG 60.072 38.462 0.00 0.00 0.00 3.51
496 501 6.845758 ATGACCATTTTTCATGATGTCTGT 57.154 33.333 0.00 0.00 32.26 3.41
537 542 4.023536 ACCTCAACGCACAAAAATACGAAT 60.024 37.500 0.00 0.00 0.00 3.34
539 544 2.873472 ACCTCAACGCACAAAAATACGA 59.127 40.909 0.00 0.00 0.00 3.43
541 546 5.517054 TCAAAACCTCAACGCACAAAAATAC 59.483 36.000 0.00 0.00 0.00 1.89
554 559 7.177744 ACAGACTTACCTTTTTCAAAACCTCAA 59.822 33.333 0.00 0.00 0.00 3.02
558 563 6.859017 TGACAGACTTACCTTTTTCAAAACC 58.141 36.000 0.00 0.00 0.00 3.27
626 632 0.787787 TTGACGCAATCACGCTACAC 59.212 50.000 0.00 0.00 36.92 2.90
643 649 1.139058 CCAGGGATACTTCGGACCTTG 59.861 57.143 0.00 0.00 0.00 3.61
648 654 1.507140 ATTGCCAGGGATACTTCGGA 58.493 50.000 0.00 0.00 0.00 4.55
665 694 6.799926 ATTTTGCGGTAATTTTGCTGAATT 57.200 29.167 3.89 3.89 33.95 2.17
694 728 0.763223 GGAAAGGGGATCGGCTAGGA 60.763 60.000 0.00 0.00 0.00 2.94
697 731 1.113517 CGAGGAAAGGGGATCGGCTA 61.114 60.000 0.00 0.00 0.00 3.93
699 733 2.109181 CGAGGAAAGGGGATCGGC 59.891 66.667 0.00 0.00 0.00 5.54
702 736 1.051556 AGCCTCGAGGAAAGGGGATC 61.052 60.000 35.69 13.57 37.39 3.36
721 755 1.826921 GTGGATACCTCGCCCTCGA 60.827 63.158 0.00 0.00 43.28 4.04
722 756 2.728817 GTGGATACCTCGCCCTCG 59.271 66.667 0.00 0.00 0.00 4.63
723 757 3.139565 GGTGGATACCTCGCCCTC 58.860 66.667 0.00 0.00 43.97 4.30
803 843 3.157949 CTCGGGGAGGGAAGGAGC 61.158 72.222 0.00 0.00 0.00 4.70
856 896 4.432741 GAAGGGGCAGGTGGAGGC 62.433 72.222 0.00 0.00 0.00 4.70
859 899 2.610859 GAGGAAGGGGCAGGTGGA 60.611 66.667 0.00 0.00 0.00 4.02
891 931 3.469970 TGATGACCGGCGGCTGAT 61.470 61.111 28.71 15.53 0.00 2.90
903 963 0.037326 GAAGAGGTGCGGTGTGATGA 60.037 55.000 0.00 0.00 0.00 2.92
1186 1257 7.704789 AGAAAACTCATGAACTTGCAAAATC 57.295 32.000 0.00 2.23 0.00 2.17
1202 1273 7.447545 AGTTTATCACCAAACCCTAGAAAACTC 59.552 37.037 0.00 0.00 38.86 3.01
1444 1715 3.426695 GGAGCCACGTCTTCATTGATTTG 60.427 47.826 0.00 0.00 0.00 2.32
1448 1719 0.684535 TGGAGCCACGTCTTCATTGA 59.315 50.000 0.00 0.00 0.00 2.57
1451 1722 3.845781 ATTATGGAGCCACGTCTTCAT 57.154 42.857 3.71 3.71 36.34 2.57
1453 1724 4.323553 ACTATTATGGAGCCACGTCTTC 57.676 45.455 0.00 0.00 0.00 2.87
1546 1817 9.394767 ACATACTGATATATGTGAAGTTTTGCA 57.605 29.630 0.00 0.00 42.84 4.08
1803 2106 5.571741 TCATTAACTCAGCTCGTAAAAGTCG 59.428 40.000 0.00 0.00 0.00 4.18
1812 2115 2.100584 AGAGGCTCATTAACTCAGCTCG 59.899 50.000 18.26 0.00 33.76 5.03
1835 2145 6.994496 TCTCTGCAAGAAGAAGAAGAAAATCA 59.006 34.615 0.00 0.00 46.34 2.57
1872 2182 2.270352 TCCCAGCTAACCAAACACAG 57.730 50.000 0.00 0.00 0.00 3.66
1884 2194 0.178891 TCTCCTCCAACTTCCCAGCT 60.179 55.000 0.00 0.00 0.00 4.24
1914 2224 8.623903 TGGAAGACAAATATGATATGCTTTGAC 58.376 33.333 4.54 0.00 33.79 3.18
1964 2274 6.016777 CACATCCAAGAATTCTATTGGTAGGC 60.017 42.308 20.70 0.00 45.16 3.93
1989 2299 6.872670 TGAACAAAACATACCGTTGAAAAC 57.127 33.333 0.00 0.00 45.31 2.43
2095 2408 6.006449 ACAGATGCCATTCTAAGTTTCAAGT 58.994 36.000 0.00 0.00 0.00 3.16
2140 2453 7.174772 TGCAACAACAACATATGATACAGAAGT 59.825 33.333 10.38 0.00 0.00 3.01
2143 2456 6.403527 GCTGCAACAACAACATATGATACAGA 60.404 38.462 10.38 0.00 0.00 3.41
2231 2566 4.040217 GTCCTTATCAGATCATGCCTCAGT 59.960 45.833 0.00 0.00 0.00 3.41
2255 2590 0.994995 CCTTCAGCAGATGTCGTTCG 59.005 55.000 0.00 0.00 0.00 3.95
2288 2623 2.892334 CGGGTGTTCAACGTGGCAG 61.892 63.158 0.00 0.00 0.00 4.85
2330 2665 2.032681 GGGGCTTCGAGTGTTGCT 59.967 61.111 0.00 0.00 0.00 3.91
2498 2836 1.366679 CTGCAGCAGTACCACATCAG 58.633 55.000 14.90 0.00 0.00 2.90
2613 3142 7.781693 ACTCCCTCCGTAAACTAATATAAGACA 59.218 37.037 0.00 0.00 0.00 3.41
2681 3211 9.643693 ATCAAGTAAAATGCAAGGTTTAATGAG 57.356 29.630 15.24 8.06 0.00 2.90
2750 3281 1.028130 TGAAACGGCAGATGCAAACA 58.972 45.000 7.19 0.00 44.36 2.83
2947 3478 0.661552 CCTGAATTGCTGCCTCATCG 59.338 55.000 0.00 0.00 0.00 3.84
3090 3621 8.970691 AGAAACAACATAATTTGTAGTGATGC 57.029 30.769 0.00 0.00 38.82 3.91
3138 3669 9.420118 TGCAAATAAATCCAGTAATCATTACCT 57.580 29.630 3.76 0.00 36.81 3.08
3139 3670 9.463443 GTGCAAATAAATCCAGTAATCATTACC 57.537 33.333 3.76 0.00 36.81 2.85
3142 3673 9.807649 GAAGTGCAAATAAATCCAGTAATCATT 57.192 29.630 0.00 0.00 0.00 2.57
3149 3680 9.113838 CTGTATAGAAGTGCAAATAAATCCAGT 57.886 33.333 0.00 0.00 0.00 4.00
3193 3724 2.957006 AGTACCCCTATCACTAGCAACG 59.043 50.000 0.00 0.00 0.00 4.10
3254 3785 2.125350 CTCTCGTCCTGCCTTGGC 60.125 66.667 4.43 4.43 0.00 4.52
3306 3837 1.814394 CATTTAGCTCAGCAGGCAACA 59.186 47.619 0.00 0.00 41.41 3.33
3328 3859 0.687354 TCACTGCCTGGTCTCCTTTC 59.313 55.000 0.00 0.00 0.00 2.62
3345 3876 3.320826 TGACCTGTCACTCTTCGAATTCA 59.679 43.478 6.22 0.00 34.14 2.57
3361 3892 1.751351 TCGACATTAGGCTCTGACCTG 59.249 52.381 0.00 0.00 41.34 4.00
3388 3919 8.429237 TTGATCTACTTCTTTCTCTTTCCTCT 57.571 34.615 0.00 0.00 0.00 3.69
3533 4070 5.220472 CGCATTACATCTCAAACAGTGTAGG 60.220 44.000 0.00 0.00 0.00 3.18
3612 4151 2.125512 GACGAGCGGTGCCTTGAT 60.126 61.111 0.00 0.00 0.00 2.57
3656 4195 1.973812 GGGGTTGCTGAAGTGAGGC 60.974 63.158 0.00 0.00 0.00 4.70
3667 4206 2.442087 GGGGCACTATGGGGTTGC 60.442 66.667 0.00 0.00 0.00 4.17
3692 4238 8.853077 ACAAGACAGATGAGAAACATGATTTA 57.147 30.769 0.00 0.00 39.56 1.40
3737 4287 2.178890 AGACGAGTAGTAGCCGGCG 61.179 63.158 23.20 6.46 36.27 6.46
3790 4340 2.217038 AACAGGGAAGCTCGGCTGA 61.217 57.895 0.00 0.00 39.62 4.26
3833 4383 1.080501 CGCTTCGTCAGGAGCTTCA 60.081 57.895 0.00 0.00 0.00 3.02
3846 4396 1.464997 ACCAAATTCTTCTCGCGCTTC 59.535 47.619 5.56 0.00 0.00 3.86
3852 4403 5.182001 ACCAGATGAAACCAAATTCTTCTCG 59.818 40.000 3.34 1.05 40.09 4.04
3867 4418 4.100963 ACAGACAGTGTAACACCAGATGAA 59.899 41.667 0.00 0.00 41.43 2.57
3900 4452 4.197750 AGTGATGCAGATTGGACTGATTC 58.802 43.478 0.00 0.00 39.94 2.52
3916 4468 4.923893 TGTTTCTCTGTTGCAAAGTGATG 58.076 39.130 0.00 0.00 0.00 3.07
3995 4550 0.311165 CGCATGTAGGAGTACTCGGG 59.689 60.000 16.56 6.36 0.00 5.14
4135 4691 5.472478 ACAATGTCAATGCATATCAGCCTAG 59.528 40.000 0.00 0.00 0.00 3.02
4154 4710 6.415867 CACAAGAGAAGCAAAGTACAACAATG 59.584 38.462 0.00 0.00 0.00 2.82
4169 4725 3.303395 GGCGTCTTCAAACACAAGAGAAG 60.303 47.826 0.00 0.00 38.98 2.85
4188 4769 2.301296 AGATAAGAGATCACATGGGGCG 59.699 50.000 0.00 0.00 0.00 6.13
4190 4771 5.248020 AGCTAAGATAAGAGATCACATGGGG 59.752 44.000 0.00 0.00 0.00 4.96
4191 4772 6.357579 AGCTAAGATAAGAGATCACATGGG 57.642 41.667 0.00 0.00 0.00 4.00
4223 4804 5.531753 ATTCAGGACGGAGGGAGTATATA 57.468 43.478 0.00 0.00 0.00 0.86
4224 4805 3.897657 TTCAGGACGGAGGGAGTATAT 57.102 47.619 0.00 0.00 0.00 0.86
4225 4806 3.897657 ATTCAGGACGGAGGGAGTATA 57.102 47.619 0.00 0.00 0.00 1.47
4226 4807 2.777459 ATTCAGGACGGAGGGAGTAT 57.223 50.000 0.00 0.00 0.00 2.12
4227 4808 2.544844 AATTCAGGACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
4228 4809 2.108970 GTAATTCAGGACGGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
4251 4832 6.400621 CGTCGCAAATTACTTGTATCAAGACA 60.401 38.462 15.04 3.03 37.36 3.41
4346 4937 3.679639 GCAGCCCCATTTCAAAACCATAG 60.680 47.826 0.00 0.00 0.00 2.23
4392 4987 8.212317 TCGAATTTAATTCTCATGCAATCTGA 57.788 30.769 14.66 0.00 37.13 3.27
4393 4988 8.845942 TTCGAATTTAATTCTCATGCAATCTG 57.154 30.769 14.66 0.00 37.13 2.90
4420 5015 2.541556 GTTAGGCGTTTGCAAACCAAA 58.458 42.857 31.14 18.88 45.35 3.28
4421 5016 2.211353 GTTAGGCGTTTGCAAACCAA 57.789 45.000 31.14 18.91 45.35 3.67
4422 5017 3.949031 GTTAGGCGTTTGCAAACCA 57.051 47.368 31.14 14.71 45.35 3.67
4423 5018 0.662077 CGGTTAGGCGTTTGCAAACC 60.662 55.000 31.14 23.76 46.89 3.27
4424 5019 1.272784 GCGGTTAGGCGTTTGCAAAC 61.273 55.000 28.61 28.61 45.35 2.93
4425 5020 1.008309 GCGGTTAGGCGTTTGCAAA 60.008 52.632 8.05 8.05 45.35 3.68
4426 5021 1.725557 TTGCGGTTAGGCGTTTGCAA 61.726 50.000 0.00 0.00 45.35 4.08
4427 5022 2.123988 CTTGCGGTTAGGCGTTTGCA 62.124 55.000 0.00 0.00 45.35 4.08
4428 5023 1.442017 CTTGCGGTTAGGCGTTTGC 60.442 57.895 0.00 0.00 41.71 3.68
4429 5024 0.589223 TTCTTGCGGTTAGGCGTTTG 59.411 50.000 0.00 0.00 35.06 2.93
4430 5025 0.872388 CTTCTTGCGGTTAGGCGTTT 59.128 50.000 0.00 0.00 35.06 3.60
4431 5026 0.034337 TCTTCTTGCGGTTAGGCGTT 59.966 50.000 0.00 0.00 35.06 4.84
4432 5027 0.389948 CTCTTCTTGCGGTTAGGCGT 60.390 55.000 0.00 0.00 35.06 5.68
4433 5028 0.389948 ACTCTTCTTGCGGTTAGGCG 60.390 55.000 0.00 0.00 35.06 5.52
4434 5029 1.732809 GAACTCTTCTTGCGGTTAGGC 59.267 52.381 0.00 0.00 0.00 3.93
4435 5030 2.996621 CTGAACTCTTCTTGCGGTTAGG 59.003 50.000 0.00 0.00 0.00 2.69
4436 5031 3.914312 TCTGAACTCTTCTTGCGGTTAG 58.086 45.455 0.00 0.00 0.00 2.34
4437 5032 4.330944 TTCTGAACTCTTCTTGCGGTTA 57.669 40.909 0.00 0.00 0.00 2.85
4438 5033 2.910688 TCTGAACTCTTCTTGCGGTT 57.089 45.000 0.00 0.00 0.00 4.44
4439 5034 2.910688 TTCTGAACTCTTCTTGCGGT 57.089 45.000 0.00 0.00 0.00 5.68
4440 5035 4.214119 TCATTTTCTGAACTCTTCTTGCGG 59.786 41.667 0.00 0.00 0.00 5.69
4441 5036 5.348418 TCATTTTCTGAACTCTTCTTGCG 57.652 39.130 0.00 0.00 0.00 4.85
4442 5037 5.240403 ACCTCATTTTCTGAACTCTTCTTGC 59.760 40.000 0.00 0.00 32.14 4.01
4443 5038 6.874288 ACCTCATTTTCTGAACTCTTCTTG 57.126 37.500 0.00 0.00 32.14 3.02
4444 5039 7.663493 CCTTACCTCATTTTCTGAACTCTTCTT 59.337 37.037 0.00 0.00 32.14 2.52
4445 5040 7.016661 TCCTTACCTCATTTTCTGAACTCTTCT 59.983 37.037 0.00 0.00 32.14 2.85
4446 5041 7.162082 TCCTTACCTCATTTTCTGAACTCTTC 58.838 38.462 0.00 0.00 32.14 2.87
4447 5042 7.079451 TCCTTACCTCATTTTCTGAACTCTT 57.921 36.000 0.00 0.00 32.14 2.85
4448 5043 6.688073 TCCTTACCTCATTTTCTGAACTCT 57.312 37.500 0.00 0.00 32.14 3.24
4449 5044 9.103861 CTTATCCTTACCTCATTTTCTGAACTC 57.896 37.037 0.00 0.00 32.14 3.01
4450 5045 8.049721 CCTTATCCTTACCTCATTTTCTGAACT 58.950 37.037 0.00 0.00 32.14 3.01
4451 5046 7.201741 GCCTTATCCTTACCTCATTTTCTGAAC 60.202 40.741 0.00 0.00 32.14 3.18
4452 5047 6.828785 GCCTTATCCTTACCTCATTTTCTGAA 59.171 38.462 0.00 0.00 32.14 3.02
4453 5048 6.357367 GCCTTATCCTTACCTCATTTTCTGA 58.643 40.000 0.00 0.00 0.00 3.27
4454 5049 5.237344 CGCCTTATCCTTACCTCATTTTCTG 59.763 44.000 0.00 0.00 0.00 3.02
4455 5050 5.368989 CGCCTTATCCTTACCTCATTTTCT 58.631 41.667 0.00 0.00 0.00 2.52
4456 5051 4.023963 GCGCCTTATCCTTACCTCATTTTC 60.024 45.833 0.00 0.00 0.00 2.29
4457 5052 3.883489 GCGCCTTATCCTTACCTCATTTT 59.117 43.478 0.00 0.00 0.00 1.82
4458 5053 3.477530 GCGCCTTATCCTTACCTCATTT 58.522 45.455 0.00 0.00 0.00 2.32
4459 5054 2.224548 GGCGCCTTATCCTTACCTCATT 60.225 50.000 22.15 0.00 0.00 2.57
4460 5055 1.348036 GGCGCCTTATCCTTACCTCAT 59.652 52.381 22.15 0.00 0.00 2.90
4461 5056 0.756903 GGCGCCTTATCCTTACCTCA 59.243 55.000 22.15 0.00 0.00 3.86
4462 5057 0.319641 CGGCGCCTTATCCTTACCTC 60.320 60.000 26.68 0.00 0.00 3.85
4463 5058 1.047034 ACGGCGCCTTATCCTTACCT 61.047 55.000 26.68 0.00 0.00 3.08
4464 5059 0.599466 GACGGCGCCTTATCCTTACC 60.599 60.000 26.68 0.00 0.00 2.85
4465 5060 0.599466 GGACGGCGCCTTATCCTTAC 60.599 60.000 26.68 0.26 0.00 2.34
4466 5061 1.744014 GGACGGCGCCTTATCCTTA 59.256 57.895 26.68 0.00 0.00 2.69
4467 5062 2.504519 GGACGGCGCCTTATCCTT 59.495 61.111 26.68 0.00 0.00 3.36
4468 5063 3.912907 CGGACGGCGCCTTATCCT 61.913 66.667 28.37 6.52 0.00 3.24
4469 5064 4.963428 CCGGACGGCGCCTTATCC 62.963 72.222 26.68 25.21 0.00 2.59
4479 5074 4.514577 CCAGCTACAGCCGGACGG 62.515 72.222 5.05 6.35 41.04 4.79
4481 5076 4.840005 GGCCAGCTACAGCCGGAC 62.840 72.222 5.05 0.00 41.04 4.79
4485 5080 2.820037 GTTCGGCCAGCTACAGCC 60.820 66.667 2.24 10.79 46.17 4.85
4486 5081 1.671054 TTGTTCGGCCAGCTACAGC 60.671 57.895 2.24 0.00 42.49 4.40
4487 5082 0.602638 TGTTGTTCGGCCAGCTACAG 60.603 55.000 2.24 0.00 0.00 2.74
4488 5083 0.602638 CTGTTGTTCGGCCAGCTACA 60.603 55.000 2.24 4.49 0.00 2.74
4489 5084 1.912371 GCTGTTGTTCGGCCAGCTAC 61.912 60.000 2.24 0.00 46.23 3.58
4490 5085 1.671054 GCTGTTGTTCGGCCAGCTA 60.671 57.895 2.24 0.00 46.23 3.32
4491 5086 2.980233 GCTGTTGTTCGGCCAGCT 60.980 61.111 2.24 0.00 46.23 4.24
4497 5092 2.978010 AAGGCGGCTGTTGTTCGG 60.978 61.111 14.21 0.00 0.00 4.30
4498 5093 1.577328 ATCAAGGCGGCTGTTGTTCG 61.577 55.000 14.21 0.00 0.00 3.95
4499 5094 1.398390 CTATCAAGGCGGCTGTTGTTC 59.602 52.381 14.21 0.00 0.00 3.18
4500 5095 1.453155 CTATCAAGGCGGCTGTTGTT 58.547 50.000 14.21 5.84 0.00 2.83
4501 5096 1.026718 GCTATCAAGGCGGCTGTTGT 61.027 55.000 14.21 1.65 0.00 3.32
4502 5097 1.718757 GGCTATCAAGGCGGCTGTTG 61.719 60.000 14.21 8.53 38.69 3.33
4503 5098 1.452108 GGCTATCAAGGCGGCTGTT 60.452 57.895 14.21 2.71 38.69 3.16
4504 5099 2.190578 GGCTATCAAGGCGGCTGT 59.809 61.111 14.21 4.49 38.69 4.40
4510 5105 1.134670 AGAGTCAACGGCTATCAAGGC 60.135 52.381 0.00 0.00 44.69 4.35
4511 5106 2.969628 AGAGTCAACGGCTATCAAGG 57.030 50.000 0.00 0.00 0.00 3.61
4512 5107 3.118956 AGGAAGAGTCAACGGCTATCAAG 60.119 47.826 0.00 0.00 0.00 3.02
4513 5108 2.832129 AGGAAGAGTCAACGGCTATCAA 59.168 45.455 0.00 0.00 0.00 2.57
4514 5109 2.427453 GAGGAAGAGTCAACGGCTATCA 59.573 50.000 0.00 0.00 0.00 2.15
4515 5110 2.691011 AGAGGAAGAGTCAACGGCTATC 59.309 50.000 0.00 0.00 0.00 2.08
4516 5111 2.691011 GAGAGGAAGAGTCAACGGCTAT 59.309 50.000 0.00 0.00 0.00 2.97
4517 5112 2.093106 GAGAGGAAGAGTCAACGGCTA 58.907 52.381 0.00 0.00 0.00 3.93
4518 5113 0.892063 GAGAGGAAGAGTCAACGGCT 59.108 55.000 0.00 0.00 0.00 5.52
4519 5114 0.892063 AGAGAGGAAGAGTCAACGGC 59.108 55.000 0.00 0.00 0.00 5.68
4520 5115 1.403514 GCAGAGAGGAAGAGTCAACGG 60.404 57.143 0.00 0.00 0.00 4.44
4521 5116 1.403514 GGCAGAGAGGAAGAGTCAACG 60.404 57.143 0.00 0.00 0.00 4.10
4522 5117 1.620819 TGGCAGAGAGGAAGAGTCAAC 59.379 52.381 0.00 0.00 0.00 3.18
4523 5118 1.898472 CTGGCAGAGAGGAAGAGTCAA 59.102 52.381 9.42 0.00 0.00 3.18
4524 5119 1.554836 CTGGCAGAGAGGAAGAGTCA 58.445 55.000 9.42 0.00 0.00 3.41
4525 5120 0.175531 GCTGGCAGAGAGGAAGAGTC 59.824 60.000 20.86 0.00 0.00 3.36
4526 5121 1.264045 GGCTGGCAGAGAGGAAGAGT 61.264 60.000 20.86 0.00 0.00 3.24
4527 5122 1.521616 GGCTGGCAGAGAGGAAGAG 59.478 63.158 20.86 0.00 0.00 2.85
4528 5123 1.992277 GGGCTGGCAGAGAGGAAGA 60.992 63.158 20.86 0.00 0.00 2.87
4529 5124 1.994507 AGGGCTGGCAGAGAGGAAG 60.995 63.158 20.86 0.00 0.00 3.46
4530 5125 2.123632 AGGGCTGGCAGAGAGGAA 59.876 61.111 20.86 0.00 0.00 3.36
4531 5126 2.686470 CAGGGCTGGCAGAGAGGA 60.686 66.667 20.86 0.00 0.00 3.71
4532 5127 4.486503 GCAGGGCTGGCAGAGAGG 62.487 72.222 20.86 5.48 0.00 3.69
4533 5128 3.388703 GAGCAGGGCTGGCAGAGAG 62.389 68.421 20.86 5.49 39.88 3.20
4534 5129 3.397439 GAGCAGGGCTGGCAGAGA 61.397 66.667 20.86 0.00 39.88 3.10
4535 5130 4.486503 GGAGCAGGGCTGGCAGAG 62.487 72.222 20.86 5.50 39.88 3.35
4537 5132 3.991725 GAAGGAGCAGGGCTGGCAG 62.992 68.421 10.94 10.94 39.88 4.85
4538 5133 4.039092 GAAGGAGCAGGGCTGGCA 62.039 66.667 2.88 0.00 39.88 4.92
4539 5134 4.811364 GGAAGGAGCAGGGCTGGC 62.811 72.222 0.00 0.00 39.88 4.85
4540 5135 4.120755 GGGAAGGAGCAGGGCTGG 62.121 72.222 0.00 0.00 39.88 4.85
4541 5136 2.621517 GATGGGAAGGAGCAGGGCTG 62.622 65.000 0.00 0.00 39.88 4.85
4542 5137 2.286732 ATGGGAAGGAGCAGGGCT 60.287 61.111 0.00 0.00 43.88 5.19
4543 5138 2.194326 GATGGGAAGGAGCAGGGC 59.806 66.667 0.00 0.00 0.00 5.19
4544 5139 1.835693 GAGATGGGAAGGAGCAGGG 59.164 63.158 0.00 0.00 0.00 4.45
4579 5201 2.841044 GGCTGGCATTGGGGATGG 60.841 66.667 0.00 0.00 36.21 3.51
4582 5204 1.152161 TTTTGGCTGGCATTGGGGA 60.152 52.632 4.22 0.00 0.00 4.81
4608 5232 1.520342 GCTGGAGCTGCTACGGAAG 60.520 63.158 24.76 9.08 38.21 3.46
4617 5241 4.834453 CAGAGGCCGCTGGAGCTG 62.834 72.222 27.35 9.18 39.32 4.24
4624 5248 1.302832 CAAAACCTCAGAGGCCGCT 60.303 57.895 17.31 1.77 39.63 5.52
4628 5252 0.595095 CACTGCAAAACCTCAGAGGC 59.405 55.000 17.31 2.38 39.63 4.70
4632 5256 3.686726 GTCTATCCACTGCAAAACCTCAG 59.313 47.826 0.00 0.00 36.45 3.35
4661 5285 2.359900 GTGATTCCTGGAACGCTGATT 58.640 47.619 12.11 0.00 0.00 2.57
4662 5286 1.740380 CGTGATTCCTGGAACGCTGAT 60.740 52.381 12.11 0.00 0.00 2.90
4684 5308 2.124024 GCAGATCATGGGCAGCCA 60.124 61.111 15.19 0.00 0.00 4.75
4697 5321 1.143183 GAAGATTACGGCCCGCAGA 59.857 57.895 1.23 0.00 0.00 4.26
4707 5331 0.539986 TGGCGGGGACAGAAGATTAC 59.460 55.000 0.00 0.00 0.00 1.89
4714 5338 0.183971 TTTCTTTTGGCGGGGACAGA 59.816 50.000 0.00 0.00 0.00 3.41
4715 5339 0.598065 CTTTCTTTTGGCGGGGACAG 59.402 55.000 0.00 0.00 0.00 3.51
4716 5340 0.183971 TCTTTCTTTTGGCGGGGACA 59.816 50.000 0.00 0.00 0.00 4.02
4717 5341 0.881796 CTCTTTCTTTTGGCGGGGAC 59.118 55.000 0.00 0.00 0.00 4.46
4718 5342 0.768622 TCTCTTTCTTTTGGCGGGGA 59.231 50.000 0.00 0.00 0.00 4.81
4719 5343 1.168714 CTCTCTTTCTTTTGGCGGGG 58.831 55.000 0.00 0.00 0.00 5.73
4722 5346 2.421619 AGAGCTCTCTTTCTTTTGGCG 58.578 47.619 11.45 0.00 36.31 5.69
4723 5347 5.879777 AGATTAGAGCTCTCTTTCTTTTGGC 59.120 40.000 22.17 0.00 40.93 4.52
4724 5348 6.878389 ACAGATTAGAGCTCTCTTTCTTTTGG 59.122 38.462 22.17 10.79 40.93 3.28
4725 5349 7.064490 GGACAGATTAGAGCTCTCTTTCTTTTG 59.936 40.741 22.17 11.85 40.93 2.44
4726 5350 7.102993 GGACAGATTAGAGCTCTCTTTCTTTT 58.897 38.462 22.17 9.73 40.93 2.27
4727 5351 6.351796 GGGACAGATTAGAGCTCTCTTTCTTT 60.352 42.308 22.17 13.39 40.93 2.52
4728 5352 5.128663 GGGACAGATTAGAGCTCTCTTTCTT 59.871 44.000 22.17 11.01 40.93 2.52
4729 5353 4.649218 GGGACAGATTAGAGCTCTCTTTCT 59.351 45.833 22.17 17.16 40.93 2.52
4730 5354 4.404073 TGGGACAGATTAGAGCTCTCTTTC 59.596 45.833 22.17 13.65 40.93 2.62
4731 5355 4.357325 TGGGACAGATTAGAGCTCTCTTT 58.643 43.478 22.17 4.52 40.93 2.52
4732 5356 3.987745 TGGGACAGATTAGAGCTCTCTT 58.012 45.455 22.17 8.96 40.93 2.85
4733 5357 3.678965 TGGGACAGATTAGAGCTCTCT 57.321 47.619 22.17 9.02 43.40 3.10
4747 5371 2.422235 CCAACTTACAACACCTGGGACA 60.422 50.000 0.00 0.00 0.00 4.02
4748 5372 2.227194 CCAACTTACAACACCTGGGAC 58.773 52.381 0.00 0.00 0.00 4.46
4749 5373 1.847737 ACCAACTTACAACACCTGGGA 59.152 47.619 0.00 0.00 0.00 4.37
4750 5374 2.358322 ACCAACTTACAACACCTGGG 57.642 50.000 0.00 0.00 0.00 4.45
4751 5375 4.081322 ACTACCAACTTACAACACCTGG 57.919 45.455 0.00 0.00 0.00 4.45
4752 5376 4.879545 ACAACTACCAACTTACAACACCTG 59.120 41.667 0.00 0.00 0.00 4.00
4753 5377 5.106876 ACAACTACCAACTTACAACACCT 57.893 39.130 0.00 0.00 0.00 4.00
4754 5378 5.124297 ACAACAACTACCAACTTACAACACC 59.876 40.000 0.00 0.00 0.00 4.16
4755 5379 6.185852 ACAACAACTACCAACTTACAACAC 57.814 37.500 0.00 0.00 0.00 3.32
4756 5380 7.607223 ACTTACAACAACTACCAACTTACAACA 59.393 33.333 0.00 0.00 0.00 3.33
4757 5381 7.977904 ACTTACAACAACTACCAACTTACAAC 58.022 34.615 0.00 0.00 0.00 3.32
4758 5382 8.564509 AACTTACAACAACTACCAACTTACAA 57.435 30.769 0.00 0.00 0.00 2.41
4759 5383 7.823310 TGAACTTACAACAACTACCAACTTACA 59.177 33.333 0.00 0.00 0.00 2.41
4760 5384 8.200364 TGAACTTACAACAACTACCAACTTAC 57.800 34.615 0.00 0.00 0.00 2.34
4761 5385 7.496591 CCTGAACTTACAACAACTACCAACTTA 59.503 37.037 0.00 0.00 0.00 2.24
4762 5386 6.317893 CCTGAACTTACAACAACTACCAACTT 59.682 38.462 0.00 0.00 0.00 2.66
4763 5387 5.820947 CCTGAACTTACAACAACTACCAACT 59.179 40.000 0.00 0.00 0.00 3.16
4764 5388 5.587443 ACCTGAACTTACAACAACTACCAAC 59.413 40.000 0.00 0.00 0.00 3.77
4765 5389 5.747342 ACCTGAACTTACAACAACTACCAA 58.253 37.500 0.00 0.00 0.00 3.67
4766 5390 5.362105 ACCTGAACTTACAACAACTACCA 57.638 39.130 0.00 0.00 0.00 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.