Multiple sequence alignment - TraesCS6D01G310600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G310600 chr6D 100.000 3615 0 0 1 3615 420570153 420566539 0.000000e+00 6676.0
1 TraesCS6D01G310600 chr6D 95.322 2052 62 11 720 2743 420558956 420561001 0.000000e+00 3227.0
2 TraesCS6D01G310600 chr6D 90.368 1713 138 11 993 2697 408157089 408155396 0.000000e+00 2224.0
3 TraesCS6D01G310600 chr6D 90.257 1088 93 7 1631 2706 59088488 59087402 0.000000e+00 1410.0
4 TraesCS6D01G310600 chr6D 93.156 526 34 2 999 1523 59089086 59088562 0.000000e+00 771.0
5 TraesCS6D01G310600 chr6D 82.336 685 111 9 2937 3614 50960765 50961446 1.450000e-163 586.0
6 TraesCS6D01G310600 chr6D 95.876 194 8 0 1 194 420556530 420556723 7.530000e-82 315.0
7 TraesCS6D01G310600 chr6B 94.469 2043 83 14 715 2740 633730385 633732414 0.000000e+00 3120.0
8 TraesCS6D01G310600 chr6B 90.746 1059 87 6 1660 2708 612270840 612269783 0.000000e+00 1402.0
9 TraesCS6D01G310600 chr6B 92.097 987 75 2 1641 2626 612744564 612743580 0.000000e+00 1387.0
10 TraesCS6D01G310600 chr6B 92.924 537 37 1 993 1528 612745155 612744619 0.000000e+00 780.0
11 TraesCS6D01G310600 chr6B 91.882 542 42 2 987 1526 612271460 612270919 0.000000e+00 756.0
12 TraesCS6D01G310600 chr6B 84.615 143 7 5 729 871 612745503 612745376 1.050000e-25 128.0
13 TraesCS6D01G310600 chr6B 85.075 67 3 3 803 868 612271681 612271621 1.080000e-05 62.1
14 TraesCS6D01G310600 chr6A 94.504 2038 83 12 730 2740 563484481 563486516 0.000000e+00 3116.0
15 TraesCS6D01G310600 chr6A 89.002 1673 132 27 987 2645 553766985 553765351 0.000000e+00 2023.0
16 TraesCS6D01G310600 chr6A 91.280 1078 81 6 1641 2708 553912689 553911615 0.000000e+00 1458.0
17 TraesCS6D01G310600 chr6A 91.165 532 43 2 999 1526 553913299 553912768 0.000000e+00 719.0
18 TraesCS6D01G310600 chr6A 95.361 194 9 0 1 194 563484129 563484322 3.510000e-80 309.0
19 TraesCS6D01G310600 chr6A 94.697 132 7 0 391 522 563484330 563484461 4.730000e-49 206.0
20 TraesCS6D01G310600 chr6A 95.455 88 2 2 2749 2834 563478636 563478549 4.870000e-29 139.0
21 TraesCS6D01G310600 chr6A 92.157 51 3 1 738 787 553767164 553767114 1.800000e-08 71.3
22 TraesCS6D01G310600 chr7A 95.685 788 21 2 2830 3615 603365089 603365865 0.000000e+00 1254.0
23 TraesCS6D01G310600 chr5A 87.563 788 85 2 2830 3615 7368596 7369372 0.000000e+00 900.0
24 TraesCS6D01G310600 chr1B 90.526 190 8 6 526 713 296493809 296493628 3.610000e-60 243.0
25 TraesCS6D01G310600 chr1B 90.104 192 10 4 525 714 296806429 296806613 1.300000e-59 241.0
26 TraesCS6D01G310600 chr1B 95.294 85 2 2 195 277 557408583 557408667 2.260000e-27 134.0
27 TraesCS6D01G310600 chr1B 88.235 68 4 2 273 338 557408935 557409000 1.080000e-10 78.7
28 TraesCS6D01G310600 chr7D 87.302 189 11 6 195 378 98623224 98623404 1.700000e-48 204.0
29 TraesCS6D01G310600 chr4D 89.697 165 9 3 549 713 312943308 312943464 1.700000e-48 204.0
30 TraesCS6D01G310600 chr2B 86.082 194 11 8 193 377 368341836 368342022 1.020000e-45 195.0
31 TraesCS6D01G310600 chr4A 98.246 57 1 0 568 624 475907246 475907302 2.300000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G310600 chr6D 420566539 420570153 3614 True 6676.000000 6676 100.000000 1 3615 1 chr6D.!!$R2 3614
1 TraesCS6D01G310600 chr6D 408155396 408157089 1693 True 2224.000000 2224 90.368000 993 2697 1 chr6D.!!$R1 1704
2 TraesCS6D01G310600 chr6D 420556530 420561001 4471 False 1771.000000 3227 95.599000 1 2743 2 chr6D.!!$F2 2742
3 TraesCS6D01G310600 chr6D 59087402 59089086 1684 True 1090.500000 1410 91.706500 999 2706 2 chr6D.!!$R3 1707
4 TraesCS6D01G310600 chr6D 50960765 50961446 681 False 586.000000 586 82.336000 2937 3614 1 chr6D.!!$F1 677
5 TraesCS6D01G310600 chr6B 633730385 633732414 2029 False 3120.000000 3120 94.469000 715 2740 1 chr6B.!!$F1 2025
6 TraesCS6D01G310600 chr6B 612743580 612745503 1923 True 765.000000 1387 89.878667 729 2626 3 chr6B.!!$R2 1897
7 TraesCS6D01G310600 chr6B 612269783 612271681 1898 True 740.033333 1402 89.234333 803 2708 3 chr6B.!!$R1 1905
8 TraesCS6D01G310600 chr6A 563484129 563486516 2387 False 1210.333333 3116 94.854000 1 2740 3 chr6A.!!$F1 2739
9 TraesCS6D01G310600 chr6A 553911615 553913299 1684 True 1088.500000 1458 91.222500 999 2708 2 chr6A.!!$R3 1709
10 TraesCS6D01G310600 chr6A 553765351 553767164 1813 True 1047.150000 2023 90.579500 738 2645 2 chr6A.!!$R2 1907
11 TraesCS6D01G310600 chr7A 603365089 603365865 776 False 1254.000000 1254 95.685000 2830 3615 1 chr7A.!!$F1 785
12 TraesCS6D01G310600 chr5A 7368596 7369372 776 False 900.000000 900 87.563000 2830 3615 1 chr5A.!!$F1 785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
698 2796 0.031721 CTCCCCGTATTAGTCCGTGC 59.968 60.0 0.0 0.0 0.00 5.34 F
871 3023 0.108615 ACTGTCATGCGTCCTGCTAC 60.109 55.0 0.0 0.0 46.63 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2453 4734 1.609555 GATCTCCGTGATAAGCTCCGT 59.390 52.381 0.0 0.0 35.14 4.69 R
2794 5088 1.206849 TGAGCACGATAAGTCCATGCA 59.793 47.619 0.0 0.0 36.11 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 5.428253 GAGGTGTTCTATAGAATTGGTGCA 58.572 41.667 17.95 7.66 36.33 4.57
146 147 1.251527 CCGGGCGCCTCTATATCTGT 61.252 60.000 28.56 0.00 0.00 3.41
198 199 2.517402 GGTGTTCACAACGGGGCA 60.517 61.111 5.32 0.00 0.00 5.36
199 200 2.122167 GGTGTTCACAACGGGGCAA 61.122 57.895 5.32 0.00 0.00 4.52
200 201 1.460273 GGTGTTCACAACGGGGCAAT 61.460 55.000 5.32 0.00 0.00 3.56
201 202 0.318614 GTGTTCACAACGGGGCAATG 60.319 55.000 0.00 0.00 0.00 2.82
202 203 1.372872 GTTCACAACGGGGCAATGC 60.373 57.895 0.00 0.00 0.00 3.56
203 204 1.530419 TTCACAACGGGGCAATGCT 60.530 52.632 4.82 0.00 0.00 3.79
204 205 0.250945 TTCACAACGGGGCAATGCTA 60.251 50.000 4.82 0.00 0.00 3.49
205 206 0.250945 TCACAACGGGGCAATGCTAA 60.251 50.000 4.82 0.00 0.00 3.09
206 207 0.109319 CACAACGGGGCAATGCTAAC 60.109 55.000 4.82 0.00 0.00 2.34
207 208 0.251165 ACAACGGGGCAATGCTAACT 60.251 50.000 4.82 0.00 0.00 2.24
208 209 0.451783 CAACGGGGCAATGCTAACTC 59.548 55.000 4.82 0.00 0.00 3.01
209 210 0.037590 AACGGGGCAATGCTAACTCA 59.962 50.000 4.82 0.00 0.00 3.41
210 211 0.676782 ACGGGGCAATGCTAACTCAC 60.677 55.000 4.82 0.00 0.00 3.51
211 212 1.705337 CGGGGCAATGCTAACTCACG 61.705 60.000 4.82 0.00 0.00 4.35
212 213 1.376609 GGGGCAATGCTAACTCACGG 61.377 60.000 4.82 0.00 0.00 4.94
213 214 1.376609 GGGCAATGCTAACTCACGGG 61.377 60.000 4.82 0.00 0.00 5.28
214 215 1.376609 GGCAATGCTAACTCACGGGG 61.377 60.000 4.82 0.00 0.00 5.73
215 216 1.376609 GCAATGCTAACTCACGGGGG 61.377 60.000 0.00 0.00 0.00 5.40
229 230 3.254617 GGGGGTTCACGGGGAGTT 61.255 66.667 0.00 0.00 0.00 3.01
230 231 2.837326 GGGGGTTCACGGGGAGTTT 61.837 63.158 0.00 0.00 0.00 2.66
231 232 1.491274 GGGGGTTCACGGGGAGTTTA 61.491 60.000 0.00 0.00 0.00 2.01
232 233 0.321919 GGGGTTCACGGGGAGTTTAC 60.322 60.000 0.00 0.00 0.00 2.01
233 234 0.671472 GGGTTCACGGGGAGTTTACG 60.671 60.000 0.00 0.00 0.00 3.18
234 235 0.671472 GGTTCACGGGGAGTTTACGG 60.671 60.000 0.00 0.00 0.00 4.02
235 236 0.671472 GTTCACGGGGAGTTTACGGG 60.671 60.000 0.00 0.00 0.00 5.28
236 237 1.120795 TTCACGGGGAGTTTACGGGT 61.121 55.000 0.00 0.00 31.94 5.28
237 238 1.120795 TCACGGGGAGTTTACGGGTT 61.121 55.000 0.00 0.00 31.94 4.11
238 239 0.952010 CACGGGGAGTTTACGGGTTG 60.952 60.000 0.00 0.00 0.00 3.77
239 240 1.120795 ACGGGGAGTTTACGGGTTGA 61.121 55.000 0.00 0.00 0.00 3.18
240 241 0.251073 CGGGGAGTTTACGGGTTGAT 59.749 55.000 0.00 0.00 0.00 2.57
241 242 1.339342 CGGGGAGTTTACGGGTTGATT 60.339 52.381 0.00 0.00 0.00 2.57
242 243 2.093553 CGGGGAGTTTACGGGTTGATTA 60.094 50.000 0.00 0.00 0.00 1.75
243 244 3.619487 CGGGGAGTTTACGGGTTGATTAA 60.619 47.826 0.00 0.00 0.00 1.40
244 245 3.943381 GGGGAGTTTACGGGTTGATTAAG 59.057 47.826 0.00 0.00 0.00 1.85
245 246 4.566278 GGGGAGTTTACGGGTTGATTAAGT 60.566 45.833 0.00 0.00 0.00 2.24
246 247 5.338300 GGGGAGTTTACGGGTTGATTAAGTA 60.338 44.000 0.00 0.00 0.00 2.24
247 248 6.351711 GGGAGTTTACGGGTTGATTAAGTAT 58.648 40.000 0.00 0.00 0.00 2.12
248 249 6.825213 GGGAGTTTACGGGTTGATTAAGTATT 59.175 38.462 0.00 0.00 0.00 1.89
249 250 7.986889 GGGAGTTTACGGGTTGATTAAGTATTA 59.013 37.037 0.00 0.00 0.00 0.98
250 251 9.038803 GGAGTTTACGGGTTGATTAAGTATTAG 57.961 37.037 0.00 0.00 0.00 1.73
251 252 9.591792 GAGTTTACGGGTTGATTAAGTATTAGT 57.408 33.333 0.00 0.00 0.00 2.24
252 253 9.374838 AGTTTACGGGTTGATTAAGTATTAGTG 57.625 33.333 0.00 0.00 0.00 2.74
253 254 8.606602 GTTTACGGGTTGATTAAGTATTAGTGG 58.393 37.037 0.00 0.00 0.00 4.00
254 255 6.303903 ACGGGTTGATTAAGTATTAGTGGT 57.696 37.500 0.00 0.00 0.00 4.16
255 256 6.343703 ACGGGTTGATTAAGTATTAGTGGTC 58.656 40.000 0.00 0.00 0.00 4.02
256 257 5.461078 CGGGTTGATTAAGTATTAGTGGTCG 59.539 44.000 0.00 0.00 0.00 4.79
257 258 5.756833 GGGTTGATTAAGTATTAGTGGTCGG 59.243 44.000 0.00 0.00 0.00 4.79
258 259 5.756833 GGTTGATTAAGTATTAGTGGTCGGG 59.243 44.000 0.00 0.00 0.00 5.14
259 260 6.407299 GGTTGATTAAGTATTAGTGGTCGGGA 60.407 42.308 0.00 0.00 0.00 5.14
260 261 6.989155 TGATTAAGTATTAGTGGTCGGGAT 57.011 37.500 0.00 0.00 0.00 3.85
261 262 7.369551 TGATTAAGTATTAGTGGTCGGGATT 57.630 36.000 0.00 0.00 0.00 3.01
262 263 7.798071 TGATTAAGTATTAGTGGTCGGGATTT 58.202 34.615 0.00 0.00 0.00 2.17
263 264 8.926374 TGATTAAGTATTAGTGGTCGGGATTTA 58.074 33.333 0.00 0.00 0.00 1.40
264 265 9.768662 GATTAAGTATTAGTGGTCGGGATTTAA 57.231 33.333 0.00 0.00 0.00 1.52
269 270 9.774413 AGTATTAGTGGTCGGGATTTAATTAAG 57.226 33.333 0.00 0.00 0.00 1.85
270 271 8.996271 GTATTAGTGGTCGGGATTTAATTAAGG 58.004 37.037 0.00 0.00 0.00 2.69
271 272 5.446260 AGTGGTCGGGATTTAATTAAGGT 57.554 39.130 0.00 0.00 0.00 3.50
272 273 5.823312 AGTGGTCGGGATTTAATTAAGGTT 58.177 37.500 0.00 0.00 0.00 3.50
273 274 5.650703 AGTGGTCGGGATTTAATTAAGGTTG 59.349 40.000 0.00 0.00 0.00 3.77
274 275 4.951094 TGGTCGGGATTTAATTAAGGTTGG 59.049 41.667 0.00 0.00 0.00 3.77
275 276 4.202080 GGTCGGGATTTAATTAAGGTTGGC 60.202 45.833 0.00 0.00 0.00 4.52
276 277 3.628487 TCGGGATTTAATTAAGGTTGGCG 59.372 43.478 0.00 0.00 0.00 5.69
277 278 3.243267 CGGGATTTAATTAAGGTTGGCGG 60.243 47.826 0.00 0.00 0.00 6.13
278 279 3.069016 GGGATTTAATTAAGGTTGGCGGG 59.931 47.826 0.00 0.00 0.00 6.13
279 280 3.491964 GGATTTAATTAAGGTTGGCGGGC 60.492 47.826 0.00 0.00 0.00 6.13
280 281 1.476477 TTAATTAAGGTTGGCGGGCC 58.524 50.000 1.86 1.86 0.00 5.80
281 282 0.396001 TAATTAAGGTTGGCGGGCCC 60.396 55.000 13.57 13.57 34.56 5.80
282 283 3.672338 ATTAAGGTTGGCGGGCCCC 62.672 63.158 18.66 9.21 34.56 5.80
286 287 4.894896 GGTTGGCGGGCCCCATAG 62.895 72.222 18.66 2.35 34.21 2.23
287 288 4.123545 GTTGGCGGGCCCCATAGT 62.124 66.667 18.66 0.00 34.21 2.12
288 289 3.343326 TTGGCGGGCCCCATAGTT 61.343 61.111 18.66 0.00 34.21 2.24
289 290 2.001838 TTGGCGGGCCCCATAGTTA 61.002 57.895 18.66 0.00 34.21 2.24
290 291 1.572689 TTGGCGGGCCCCATAGTTAA 61.573 55.000 18.66 0.00 34.21 2.01
291 292 1.227946 GGCGGGCCCCATAGTTAAA 59.772 57.895 18.66 0.00 0.00 1.52
292 293 0.396001 GGCGGGCCCCATAGTTAAAA 60.396 55.000 18.66 0.00 0.00 1.52
293 294 1.699730 GCGGGCCCCATAGTTAAAAT 58.300 50.000 18.66 0.00 0.00 1.82
294 295 1.611977 GCGGGCCCCATAGTTAAAATC 59.388 52.381 18.66 0.00 0.00 2.17
295 296 2.938838 CGGGCCCCATAGTTAAAATCA 58.061 47.619 18.66 0.00 0.00 2.57
296 297 3.292460 CGGGCCCCATAGTTAAAATCAA 58.708 45.455 18.66 0.00 0.00 2.57
297 298 3.317993 CGGGCCCCATAGTTAAAATCAAG 59.682 47.826 18.66 0.00 0.00 3.02
298 299 3.641436 GGGCCCCATAGTTAAAATCAAGG 59.359 47.826 12.23 0.00 0.00 3.61
299 300 3.641436 GGCCCCATAGTTAAAATCAAGGG 59.359 47.826 0.00 0.00 35.00 3.95
302 303 5.137412 CCCATAGTTAAAATCAAGGGGGA 57.863 43.478 0.00 0.00 33.64 4.81
303 304 5.524535 CCCATAGTTAAAATCAAGGGGGAA 58.475 41.667 0.00 0.00 33.64 3.97
304 305 6.143206 CCCATAGTTAAAATCAAGGGGGAAT 58.857 40.000 0.00 0.00 33.64 3.01
305 306 6.615316 CCCATAGTTAAAATCAAGGGGGAATT 59.385 38.462 0.00 0.00 33.64 2.17
306 307 7.787424 CCCATAGTTAAAATCAAGGGGGAATTA 59.213 37.037 0.00 0.00 33.64 1.40
307 308 8.860088 CCATAGTTAAAATCAAGGGGGAATTAG 58.140 37.037 0.00 0.00 0.00 1.73
308 309 8.860088 CATAGTTAAAATCAAGGGGGAATTAGG 58.140 37.037 0.00 0.00 0.00 2.69
309 310 7.051696 AGTTAAAATCAAGGGGGAATTAGGA 57.948 36.000 0.00 0.00 0.00 2.94
310 311 7.126061 AGTTAAAATCAAGGGGGAATTAGGAG 58.874 38.462 0.00 0.00 0.00 3.69
311 312 5.813965 AAAATCAAGGGGGAATTAGGAGA 57.186 39.130 0.00 0.00 0.00 3.71
312 313 6.361304 AAAATCAAGGGGGAATTAGGAGAT 57.639 37.500 0.00 0.00 0.00 2.75
313 314 5.330648 AATCAAGGGGGAATTAGGAGATG 57.669 43.478 0.00 0.00 0.00 2.90
314 315 3.056080 TCAAGGGGGAATTAGGAGATGG 58.944 50.000 0.00 0.00 0.00 3.51
315 316 1.450360 AGGGGGAATTAGGAGATGGC 58.550 55.000 0.00 0.00 0.00 4.40
316 317 1.149101 GGGGGAATTAGGAGATGGCA 58.851 55.000 0.00 0.00 0.00 4.92
317 318 1.202940 GGGGGAATTAGGAGATGGCAC 60.203 57.143 0.00 0.00 0.00 5.01
318 319 1.543429 GGGGAATTAGGAGATGGCACG 60.543 57.143 0.00 0.00 0.00 5.34
319 320 1.141053 GGGAATTAGGAGATGGCACGT 59.859 52.381 0.00 0.00 0.00 4.49
320 321 2.367567 GGGAATTAGGAGATGGCACGTA 59.632 50.000 0.00 0.00 0.00 3.57
321 322 3.555168 GGGAATTAGGAGATGGCACGTAG 60.555 52.174 0.00 0.00 0.00 3.51
322 323 3.555168 GGAATTAGGAGATGGCACGTAGG 60.555 52.174 0.00 0.00 0.00 3.18
323 324 0.750850 TTAGGAGATGGCACGTAGGC 59.249 55.000 0.00 0.00 44.50 3.93
331 332 2.663196 GCACGTAGGCCACTCCTT 59.337 61.111 5.01 0.00 44.75 3.36
332 333 1.741770 GCACGTAGGCCACTCCTTG 60.742 63.158 5.01 0.00 44.75 3.61
333 334 1.972198 CACGTAGGCCACTCCTTGA 59.028 57.895 5.01 0.00 44.75 3.02
334 335 0.320374 CACGTAGGCCACTCCTTGAA 59.680 55.000 5.01 0.00 44.75 2.69
335 336 0.608640 ACGTAGGCCACTCCTTGAAG 59.391 55.000 5.01 0.00 44.75 3.02
336 337 0.108138 CGTAGGCCACTCCTTGAAGG 60.108 60.000 5.01 4.45 44.75 3.46
337 338 0.984995 GTAGGCCACTCCTTGAAGGT 59.015 55.000 11.60 0.00 44.75 3.50
338 339 0.984230 TAGGCCACTCCTTGAAGGTG 59.016 55.000 11.60 11.53 44.75 4.00
339 340 0.768221 AGGCCACTCCTTGAAGGTGA 60.768 55.000 19.17 0.00 44.75 4.02
340 341 0.110486 GGCCACTCCTTGAAGGTGAA 59.890 55.000 19.17 0.00 36.53 3.18
341 342 1.528129 GCCACTCCTTGAAGGTGAAG 58.472 55.000 19.17 8.45 36.53 3.02
342 343 1.884067 GCCACTCCTTGAAGGTGAAGG 60.884 57.143 19.17 18.66 41.36 3.46
343 344 1.421646 CCACTCCTTGAAGGTGAAGGT 59.578 52.381 19.17 5.71 40.88 3.50
344 345 2.551071 CCACTCCTTGAAGGTGAAGGTC 60.551 54.545 19.17 0.00 40.88 3.85
345 346 1.700186 ACTCCTTGAAGGTGAAGGTCC 59.300 52.381 19.17 0.00 40.88 4.46
346 347 1.699634 CTCCTTGAAGGTGAAGGTCCA 59.300 52.381 11.60 0.00 40.88 4.02
347 348 2.307098 CTCCTTGAAGGTGAAGGTCCAT 59.693 50.000 11.60 0.00 40.88 3.41
348 349 2.716424 TCCTTGAAGGTGAAGGTCCATT 59.284 45.455 11.60 0.00 40.88 3.16
349 350 2.821969 CCTTGAAGGTGAAGGTCCATTG 59.178 50.000 2.25 0.00 36.05 2.82
350 351 3.498481 CCTTGAAGGTGAAGGTCCATTGA 60.498 47.826 2.25 0.00 36.05 2.57
351 352 3.874383 TGAAGGTGAAGGTCCATTGAA 57.126 42.857 0.00 0.00 0.00 2.69
352 353 3.754965 TGAAGGTGAAGGTCCATTGAAG 58.245 45.455 0.00 0.00 0.00 3.02
353 354 2.887151 AGGTGAAGGTCCATTGAAGG 57.113 50.000 0.00 0.00 0.00 3.46
354 355 1.177401 GGTGAAGGTCCATTGAAGGC 58.823 55.000 0.00 0.00 0.00 4.35
355 356 1.547675 GGTGAAGGTCCATTGAAGGCA 60.548 52.381 0.00 0.00 0.00 4.75
356 357 1.815003 GTGAAGGTCCATTGAAGGCAG 59.185 52.381 0.00 0.00 0.00 4.85
357 358 0.813821 GAAGGTCCATTGAAGGCAGC 59.186 55.000 0.00 0.00 0.00 5.25
358 359 0.613012 AAGGTCCATTGAAGGCAGCC 60.613 55.000 1.84 1.84 0.00 4.85
359 360 2.054453 GGTCCATTGAAGGCAGCCC 61.054 63.158 8.22 0.00 0.00 5.19
360 361 2.045045 TCCATTGAAGGCAGCCCG 60.045 61.111 8.22 0.00 35.76 6.13
361 362 2.361610 CCATTGAAGGCAGCCCGT 60.362 61.111 8.22 0.00 35.76 5.28
362 363 2.703798 CCATTGAAGGCAGCCCGTG 61.704 63.158 8.22 0.00 35.76 4.94
363 364 1.675310 CATTGAAGGCAGCCCGTGA 60.675 57.895 8.22 0.00 35.76 4.35
364 365 1.377725 ATTGAAGGCAGCCCGTGAG 60.378 57.895 8.22 0.00 35.76 3.51
365 366 2.129555 ATTGAAGGCAGCCCGTGAGT 62.130 55.000 8.22 0.00 35.76 3.41
366 367 2.435059 GAAGGCAGCCCGTGAGTC 60.435 66.667 8.22 0.00 35.76 3.36
367 368 2.925170 AAGGCAGCCCGTGAGTCT 60.925 61.111 8.22 0.00 35.76 3.24
368 369 1.605058 GAAGGCAGCCCGTGAGTCTA 61.605 60.000 8.22 0.00 35.76 2.59
369 370 1.608717 AAGGCAGCCCGTGAGTCTAG 61.609 60.000 8.22 0.00 35.76 2.43
370 371 2.352032 GGCAGCCCGTGAGTCTAGT 61.352 63.158 0.00 0.00 0.00 2.57
371 372 1.035932 GGCAGCCCGTGAGTCTAGTA 61.036 60.000 0.00 0.00 0.00 1.82
372 373 1.033574 GCAGCCCGTGAGTCTAGTAT 58.966 55.000 0.00 0.00 0.00 2.12
373 374 1.409427 GCAGCCCGTGAGTCTAGTATT 59.591 52.381 0.00 0.00 0.00 1.89
374 375 2.621998 GCAGCCCGTGAGTCTAGTATTA 59.378 50.000 0.00 0.00 0.00 0.98
375 376 3.256136 GCAGCCCGTGAGTCTAGTATTAT 59.744 47.826 0.00 0.00 0.00 1.28
376 377 4.616373 GCAGCCCGTGAGTCTAGTATTATC 60.616 50.000 0.00 0.00 0.00 1.75
377 378 4.080687 AGCCCGTGAGTCTAGTATTATCC 58.919 47.826 0.00 0.00 0.00 2.59
378 379 4.080687 GCCCGTGAGTCTAGTATTATCCT 58.919 47.826 0.00 0.00 0.00 3.24
379 380 4.523558 GCCCGTGAGTCTAGTATTATCCTT 59.476 45.833 0.00 0.00 0.00 3.36
380 381 5.335819 GCCCGTGAGTCTAGTATTATCCTTC 60.336 48.000 0.00 0.00 0.00 3.46
381 382 5.768662 CCCGTGAGTCTAGTATTATCCTTCA 59.231 44.000 0.00 0.00 0.00 3.02
382 383 6.294065 CCCGTGAGTCTAGTATTATCCTTCAC 60.294 46.154 0.00 0.00 0.00 3.18
383 384 6.262496 CCGTGAGTCTAGTATTATCCTTCACA 59.738 42.308 0.00 0.00 33.80 3.58
384 385 7.201794 CCGTGAGTCTAGTATTATCCTTCACAA 60.202 40.741 0.00 0.00 33.80 3.33
385 386 7.644551 CGTGAGTCTAGTATTATCCTTCACAAC 59.355 40.741 0.00 0.00 33.80 3.32
386 387 8.467598 GTGAGTCTAGTATTATCCTTCACAACA 58.532 37.037 0.00 0.00 34.22 3.33
425 430 2.747855 CCCCTTCAGCTTGTCGCC 60.748 66.667 0.00 0.00 40.39 5.54
486 2584 3.244215 GGATGACCCGTACATGATCACAT 60.244 47.826 0.00 0.00 37.19 3.21
522 2620 0.755686 GAGGCAGGAGTAGGACCATG 59.244 60.000 0.00 0.00 0.00 3.66
523 2621 0.339859 AGGCAGGAGTAGGACCATGA 59.660 55.000 0.00 0.00 0.00 3.07
524 2622 0.466124 GGCAGGAGTAGGACCATGAC 59.534 60.000 0.00 0.00 0.00 3.06
525 2623 0.103208 GCAGGAGTAGGACCATGACG 59.897 60.000 0.00 0.00 0.00 4.35
526 2624 1.763968 CAGGAGTAGGACCATGACGA 58.236 55.000 0.00 0.00 0.00 4.20
527 2625 1.678627 CAGGAGTAGGACCATGACGAG 59.321 57.143 0.00 0.00 0.00 4.18
528 2626 0.386113 GGAGTAGGACCATGACGAGC 59.614 60.000 0.00 0.00 0.00 5.03
529 2627 1.394618 GAGTAGGACCATGACGAGCT 58.605 55.000 0.00 0.00 0.00 4.09
530 2628 1.751924 GAGTAGGACCATGACGAGCTT 59.248 52.381 0.00 0.00 0.00 3.74
531 2629 2.166664 GAGTAGGACCATGACGAGCTTT 59.833 50.000 0.00 0.00 0.00 3.51
532 2630 2.093973 AGTAGGACCATGACGAGCTTTG 60.094 50.000 0.00 0.00 0.00 2.77
533 2631 0.674895 AGGACCATGACGAGCTTTGC 60.675 55.000 0.00 0.00 0.00 3.68
534 2632 0.674895 GGACCATGACGAGCTTTGCT 60.675 55.000 0.00 0.00 43.88 3.91
535 2633 1.405526 GGACCATGACGAGCTTTGCTA 60.406 52.381 0.00 0.00 39.88 3.49
536 2634 1.661112 GACCATGACGAGCTTTGCTAC 59.339 52.381 0.00 0.00 39.88 3.58
537 2635 1.001974 ACCATGACGAGCTTTGCTACA 59.998 47.619 0.00 0.00 39.88 2.74
538 2636 1.394917 CCATGACGAGCTTTGCTACAC 59.605 52.381 0.00 0.00 39.88 2.90
539 2637 1.059692 CATGACGAGCTTTGCTACACG 59.940 52.381 0.00 0.00 39.88 4.49
540 2638 1.282248 TGACGAGCTTTGCTACACGC 61.282 55.000 0.00 0.00 39.88 5.34
548 2646 3.290567 TGCTACACGCACGGGTAT 58.709 55.556 5.50 0.00 45.47 2.73
549 2647 2.491291 TGCTACACGCACGGGTATA 58.509 52.632 5.50 0.00 45.47 1.47
550 2648 0.816373 TGCTACACGCACGGGTATAA 59.184 50.000 5.50 0.00 45.47 0.98
551 2649 1.409790 TGCTACACGCACGGGTATAAT 59.590 47.619 5.50 0.00 45.47 1.28
552 2650 2.159071 TGCTACACGCACGGGTATAATT 60.159 45.455 5.50 0.00 45.47 1.40
553 2651 2.867975 GCTACACGCACGGGTATAATTT 59.132 45.455 5.50 0.00 38.92 1.82
554 2652 3.310501 GCTACACGCACGGGTATAATTTT 59.689 43.478 5.50 0.00 38.92 1.82
555 2653 4.201841 GCTACACGCACGGGTATAATTTTT 60.202 41.667 5.50 0.00 38.92 1.94
556 2654 5.006552 GCTACACGCACGGGTATAATTTTTA 59.993 40.000 5.50 0.00 38.92 1.52
557 2655 5.220557 ACACGCACGGGTATAATTTTTAC 57.779 39.130 0.00 0.00 0.00 2.01
558 2656 4.937015 ACACGCACGGGTATAATTTTTACT 59.063 37.500 0.00 0.00 0.00 2.24
559 2657 5.163834 ACACGCACGGGTATAATTTTTACTG 60.164 40.000 0.00 0.00 0.00 2.74
560 2658 4.937015 ACGCACGGGTATAATTTTTACTGT 59.063 37.500 0.00 0.00 0.00 3.55
561 2659 5.163834 ACGCACGGGTATAATTTTTACTGTG 60.164 40.000 13.23 13.23 33.27 3.66
562 2660 5.163834 CGCACGGGTATAATTTTTACTGTGT 60.164 40.000 16.10 5.15 32.99 3.72
563 2661 6.614160 GCACGGGTATAATTTTTACTGTGTT 58.386 36.000 16.10 0.00 32.99 3.32
564 2662 6.744082 GCACGGGTATAATTTTTACTGTGTTC 59.256 38.462 16.10 5.63 32.99 3.18
565 2663 7.573469 GCACGGGTATAATTTTTACTGTGTTCA 60.573 37.037 16.10 0.00 32.99 3.18
566 2664 7.747357 CACGGGTATAATTTTTACTGTGTTCAC 59.253 37.037 0.00 0.00 0.00 3.18
567 2665 6.957077 CGGGTATAATTTTTACTGTGTTCACG 59.043 38.462 0.00 0.00 0.00 4.35
568 2666 7.245604 GGGTATAATTTTTACTGTGTTCACGG 58.754 38.462 9.84 9.84 0.00 4.94
569 2667 7.245604 GGTATAATTTTTACTGTGTTCACGGG 58.754 38.462 14.93 5.68 0.00 5.28
570 2668 4.577834 AATTTTTACTGTGTTCACGGGG 57.422 40.909 14.93 3.57 0.00 5.73
571 2669 2.713863 TTTTACTGTGTTCACGGGGT 57.286 45.000 14.93 8.39 0.00 4.95
572 2670 1.956297 TTTACTGTGTTCACGGGGTG 58.044 50.000 14.93 0.00 34.45 4.61
573 2671 0.107081 TTACTGTGTTCACGGGGTGG 59.893 55.000 14.93 0.00 33.87 4.61
574 2672 2.386064 TACTGTGTTCACGGGGTGGC 62.386 60.000 14.93 0.00 33.87 5.01
575 2673 3.476031 CTGTGTTCACGGGGTGGCT 62.476 63.158 4.05 0.00 33.87 4.75
576 2674 2.203294 GTGTTCACGGGGTGGCTT 60.203 61.111 0.00 0.00 33.87 4.35
577 2675 1.071814 GTGTTCACGGGGTGGCTTA 59.928 57.895 0.00 0.00 33.87 3.09
578 2676 0.953960 GTGTTCACGGGGTGGCTTAG 60.954 60.000 0.00 0.00 33.87 2.18
579 2677 2.038837 GTTCACGGGGTGGCTTAGC 61.039 63.158 0.00 0.00 33.87 3.09
580 2678 2.221299 TTCACGGGGTGGCTTAGCT 61.221 57.895 3.59 0.00 33.87 3.32
581 2679 2.436646 CACGGGGTGGCTTAGCTG 60.437 66.667 3.59 0.00 0.00 4.24
582 2680 3.717294 ACGGGGTGGCTTAGCTGG 61.717 66.667 3.59 0.00 0.00 4.85
583 2681 3.399181 CGGGGTGGCTTAGCTGGA 61.399 66.667 3.59 0.00 0.00 3.86
584 2682 2.966732 CGGGGTGGCTTAGCTGGAA 61.967 63.158 3.59 0.00 0.00 3.53
585 2683 1.615262 GGGGTGGCTTAGCTGGAAT 59.385 57.895 3.59 0.00 0.00 3.01
586 2684 0.843984 GGGGTGGCTTAGCTGGAATA 59.156 55.000 3.59 0.00 0.00 1.75
587 2685 1.214424 GGGGTGGCTTAGCTGGAATAA 59.786 52.381 3.59 0.00 0.00 1.40
588 2686 2.298610 GGGTGGCTTAGCTGGAATAAC 58.701 52.381 3.59 0.00 0.00 1.89
589 2687 2.356741 GGGTGGCTTAGCTGGAATAACA 60.357 50.000 3.59 0.00 0.00 2.41
590 2688 3.555966 GGTGGCTTAGCTGGAATAACAT 58.444 45.455 3.59 0.00 0.00 2.71
591 2689 3.316308 GGTGGCTTAGCTGGAATAACATG 59.684 47.826 3.59 0.00 0.00 3.21
592 2690 4.199310 GTGGCTTAGCTGGAATAACATGA 58.801 43.478 3.59 0.00 0.00 3.07
593 2691 4.823989 GTGGCTTAGCTGGAATAACATGAT 59.176 41.667 3.59 0.00 0.00 2.45
594 2692 5.300286 GTGGCTTAGCTGGAATAACATGATT 59.700 40.000 3.59 0.00 0.00 2.57
595 2693 5.300034 TGGCTTAGCTGGAATAACATGATTG 59.700 40.000 3.59 0.00 0.00 2.67
596 2694 5.532406 GGCTTAGCTGGAATAACATGATTGA 59.468 40.000 3.59 0.00 0.00 2.57
597 2695 6.293845 GGCTTAGCTGGAATAACATGATTGAG 60.294 42.308 3.59 0.00 0.00 3.02
598 2696 6.484643 GCTTAGCTGGAATAACATGATTGAGA 59.515 38.462 0.00 0.00 0.00 3.27
599 2697 7.307870 GCTTAGCTGGAATAACATGATTGAGAG 60.308 40.741 0.00 0.00 0.00 3.20
600 2698 6.244552 AGCTGGAATAACATGATTGAGAGA 57.755 37.500 0.00 0.00 0.00 3.10
601 2699 6.656902 AGCTGGAATAACATGATTGAGAGAA 58.343 36.000 0.00 0.00 0.00 2.87
602 2700 7.114754 AGCTGGAATAACATGATTGAGAGAAA 58.885 34.615 0.00 0.00 0.00 2.52
603 2701 7.778853 AGCTGGAATAACATGATTGAGAGAAAT 59.221 33.333 0.00 0.00 0.00 2.17
604 2702 9.060347 GCTGGAATAACATGATTGAGAGAAATA 57.940 33.333 0.00 0.00 0.00 1.40
611 2709 8.853077 AACATGATTGAGAGAAATAAGTGTGA 57.147 30.769 0.00 0.00 0.00 3.58
612 2710 8.489990 ACATGATTGAGAGAAATAAGTGTGAG 57.510 34.615 0.00 0.00 0.00 3.51
613 2711 7.551974 ACATGATTGAGAGAAATAAGTGTGAGG 59.448 37.037 0.00 0.00 0.00 3.86
614 2712 6.409704 TGATTGAGAGAAATAAGTGTGAGGG 58.590 40.000 0.00 0.00 0.00 4.30
615 2713 4.826274 TGAGAGAAATAAGTGTGAGGGG 57.174 45.455 0.00 0.00 0.00 4.79
616 2714 3.055094 TGAGAGAAATAAGTGTGAGGGGC 60.055 47.826 0.00 0.00 0.00 5.80
617 2715 2.239907 AGAGAAATAAGTGTGAGGGGCC 59.760 50.000 0.00 0.00 0.00 5.80
618 2716 1.285078 AGAAATAAGTGTGAGGGGCCC 59.715 52.381 17.12 17.12 0.00 5.80
619 2717 0.335019 AAATAAGTGTGAGGGGCCCC 59.665 55.000 35.90 35.90 0.00 5.80
620 2718 0.849094 AATAAGTGTGAGGGGCCCCA 60.849 55.000 42.48 21.63 38.92 4.96
621 2719 1.571773 ATAAGTGTGAGGGGCCCCAC 61.572 60.000 42.48 36.28 38.92 4.61
622 2720 2.993038 TAAGTGTGAGGGGCCCCACA 62.993 60.000 42.48 38.60 40.56 4.17
631 2729 3.269632 GGCCCCACACCCCCTAAA 61.270 66.667 0.00 0.00 0.00 1.85
632 2730 2.855597 GCCCCACACCCCCTAAAA 59.144 61.111 0.00 0.00 0.00 1.52
633 2731 1.156566 GCCCCACACCCCCTAAAAA 59.843 57.895 0.00 0.00 0.00 1.94
634 2732 0.252513 GCCCCACACCCCCTAAAAAT 60.253 55.000 0.00 0.00 0.00 1.82
635 2733 1.860641 CCCCACACCCCCTAAAAATC 58.139 55.000 0.00 0.00 0.00 2.17
636 2734 1.077993 CCCCACACCCCCTAAAAATCA 59.922 52.381 0.00 0.00 0.00 2.57
637 2735 2.456577 CCCACACCCCCTAAAAATCAG 58.543 52.381 0.00 0.00 0.00 2.90
638 2736 2.456577 CCACACCCCCTAAAAATCAGG 58.543 52.381 0.00 0.00 0.00 3.86
655 2753 4.173701 GGGGGAGGGGACGGAGAT 62.174 72.222 0.00 0.00 0.00 2.75
656 2754 2.040779 GGGGAGGGGACGGAGATT 60.041 66.667 0.00 0.00 0.00 2.40
657 2755 1.235112 GGGGAGGGGACGGAGATTA 59.765 63.158 0.00 0.00 0.00 1.75
658 2756 0.832559 GGGGAGGGGACGGAGATTAG 60.833 65.000 0.00 0.00 0.00 1.73
659 2757 0.105607 GGGAGGGGACGGAGATTAGT 60.106 60.000 0.00 0.00 0.00 2.24
660 2758 1.691801 GGGAGGGGACGGAGATTAGTT 60.692 57.143 0.00 0.00 0.00 2.24
661 2759 2.425392 GGGAGGGGACGGAGATTAGTTA 60.425 54.545 0.00 0.00 0.00 2.24
662 2760 3.303049 GGAGGGGACGGAGATTAGTTAA 58.697 50.000 0.00 0.00 0.00 2.01
663 2761 3.069300 GGAGGGGACGGAGATTAGTTAAC 59.931 52.174 0.00 0.00 0.00 2.01
664 2762 2.692041 AGGGGACGGAGATTAGTTAACG 59.308 50.000 0.00 0.00 0.00 3.18
665 2763 2.689983 GGGGACGGAGATTAGTTAACGA 59.310 50.000 0.00 0.00 0.00 3.85
666 2764 3.131046 GGGGACGGAGATTAGTTAACGAA 59.869 47.826 3.52 3.52 0.00 3.85
667 2765 4.357996 GGGACGGAGATTAGTTAACGAAG 58.642 47.826 7.25 0.00 0.00 3.79
668 2766 4.357996 GGACGGAGATTAGTTAACGAAGG 58.642 47.826 7.25 0.00 0.00 3.46
669 2767 4.096984 GGACGGAGATTAGTTAACGAAGGA 59.903 45.833 7.25 0.00 0.00 3.36
670 2768 5.246145 ACGGAGATTAGTTAACGAAGGAG 57.754 43.478 7.25 0.56 0.00 3.69
671 2769 4.704057 ACGGAGATTAGTTAACGAAGGAGT 59.296 41.667 7.25 1.09 0.00 3.85
672 2770 5.163673 ACGGAGATTAGTTAACGAAGGAGTC 60.164 44.000 7.25 0.42 0.00 3.36
673 2771 5.590145 GGAGATTAGTTAACGAAGGAGTCC 58.410 45.833 0.00 0.00 0.00 3.85
674 2772 5.246145 AGATTAGTTAACGAAGGAGTCCG 57.754 43.478 2.76 0.00 0.00 4.79
675 2773 4.704057 AGATTAGTTAACGAAGGAGTCCGT 59.296 41.667 2.76 0.00 41.14 4.69
676 2774 5.882557 AGATTAGTTAACGAAGGAGTCCGTA 59.117 40.000 2.76 0.00 38.13 4.02
677 2775 5.957842 TTAGTTAACGAAGGAGTCCGTAA 57.042 39.130 2.76 0.00 38.13 3.18
678 2776 4.853924 AGTTAACGAAGGAGTCCGTAAA 57.146 40.909 2.76 0.00 38.13 2.01
679 2777 4.550422 AGTTAACGAAGGAGTCCGTAAAC 58.450 43.478 2.76 4.11 38.13 2.01
680 2778 4.279420 AGTTAACGAAGGAGTCCGTAAACT 59.721 41.667 2.76 6.22 38.13 2.66
681 2779 3.294816 AACGAAGGAGTCCGTAAACTC 57.705 47.619 2.76 2.21 44.08 3.01
686 2784 2.270959 GAGTCCGTAAACTCCCCGT 58.729 57.895 0.00 0.00 39.85 5.28
687 2785 1.463674 GAGTCCGTAAACTCCCCGTA 58.536 55.000 0.00 0.00 39.85 4.02
688 2786 2.027385 GAGTCCGTAAACTCCCCGTAT 58.973 52.381 0.00 0.00 39.85 3.06
689 2787 2.428530 GAGTCCGTAAACTCCCCGTATT 59.571 50.000 0.00 0.00 39.85 1.89
690 2788 3.631250 AGTCCGTAAACTCCCCGTATTA 58.369 45.455 0.00 0.00 0.00 0.98
691 2789 3.633986 AGTCCGTAAACTCCCCGTATTAG 59.366 47.826 0.00 0.00 0.00 1.73
692 2790 3.381590 GTCCGTAAACTCCCCGTATTAGT 59.618 47.826 0.00 0.00 0.00 2.24
693 2791 3.632145 TCCGTAAACTCCCCGTATTAGTC 59.368 47.826 0.00 0.00 0.00 2.59
694 2792 3.243535 CCGTAAACTCCCCGTATTAGTCC 60.244 52.174 0.00 0.00 0.00 3.85
695 2793 3.548818 CGTAAACTCCCCGTATTAGTCCG 60.549 52.174 0.00 0.00 0.00 4.79
696 2794 2.149973 AACTCCCCGTATTAGTCCGT 57.850 50.000 0.00 0.00 0.00 4.69
697 2795 1.396653 ACTCCCCGTATTAGTCCGTG 58.603 55.000 0.00 0.00 0.00 4.94
698 2796 0.031721 CTCCCCGTATTAGTCCGTGC 59.968 60.000 0.00 0.00 0.00 5.34
699 2797 1.299620 CCCCGTATTAGTCCGTGCG 60.300 63.158 0.00 0.00 0.00 5.34
700 2798 1.434696 CCCGTATTAGTCCGTGCGT 59.565 57.895 0.00 0.00 0.00 5.24
701 2799 0.179129 CCCGTATTAGTCCGTGCGTT 60.179 55.000 0.00 0.00 0.00 4.84
702 2800 1.632422 CCGTATTAGTCCGTGCGTTT 58.368 50.000 0.00 0.00 0.00 3.60
703 2801 2.479389 CCCGTATTAGTCCGTGCGTTTA 60.479 50.000 0.00 0.00 0.00 2.01
704 2802 2.785477 CCGTATTAGTCCGTGCGTTTAG 59.215 50.000 0.00 0.00 0.00 1.85
705 2803 3.487376 CCGTATTAGTCCGTGCGTTTAGA 60.487 47.826 0.00 0.00 0.00 2.10
706 2804 4.097714 CGTATTAGTCCGTGCGTTTAGAA 58.902 43.478 0.00 0.00 0.00 2.10
707 2805 4.736793 CGTATTAGTCCGTGCGTTTAGAAT 59.263 41.667 0.00 0.00 0.00 2.40
708 2806 5.230726 CGTATTAGTCCGTGCGTTTAGAATT 59.769 40.000 0.00 0.00 0.00 2.17
709 2807 6.237648 CGTATTAGTCCGTGCGTTTAGAATTT 60.238 38.462 0.00 0.00 0.00 1.82
710 2808 5.927954 TTAGTCCGTGCGTTTAGAATTTT 57.072 34.783 0.00 0.00 0.00 1.82
711 2809 4.400036 AGTCCGTGCGTTTAGAATTTTC 57.600 40.909 0.00 0.00 0.00 2.29
712 2810 3.120786 AGTCCGTGCGTTTAGAATTTTCG 60.121 43.478 0.00 0.00 0.00 3.46
713 2811 3.058450 TCCGTGCGTTTAGAATTTTCGA 58.942 40.909 0.00 0.00 0.00 3.71
871 3023 0.108615 ACTGTCATGCGTCCTGCTAC 60.109 55.000 0.00 0.00 46.63 3.58
1021 3273 4.424711 GTTCGATGGGGCCTGCCA 62.425 66.667 10.86 2.03 37.98 4.92
1093 3353 3.853330 CCATGCTCAACGTCGCCG 61.853 66.667 0.00 0.00 40.83 6.46
1530 3793 4.400567 GTCCCACTCAAAGGTAGTACGTAT 59.599 45.833 0.00 0.00 0.00 3.06
1868 4149 1.363744 CGTCATCCTCAACAGCTTCC 58.636 55.000 0.00 0.00 0.00 3.46
2332 4613 2.753029 GCCCTGGAGAGCTTGTGT 59.247 61.111 0.00 0.00 0.00 3.72
2439 4720 2.756207 TGGAGATCGATAACAACGTCCA 59.244 45.455 0.00 0.00 33.41 4.02
2441 4722 3.181489 GGAGATCGATAACAACGTCCAGT 60.181 47.826 0.00 0.00 0.00 4.00
2733 5027 4.384846 CAGTGTGGTTGTGTAGAACGATAC 59.615 45.833 0.00 0.00 0.00 2.24
2743 5037 4.862574 GTGTAGAACGATACAGAACATGCA 59.137 41.667 0.00 0.00 36.36 3.96
2744 5038 5.520288 GTGTAGAACGATACAGAACATGCAT 59.480 40.000 0.00 0.00 36.36 3.96
2745 5039 5.519927 TGTAGAACGATACAGAACATGCATG 59.480 40.000 25.09 25.09 32.03 4.06
2746 5040 3.873361 AGAACGATACAGAACATGCATGG 59.127 43.478 29.41 14.61 0.00 3.66
2747 5041 1.942657 ACGATACAGAACATGCATGGC 59.057 47.619 29.41 20.39 0.00 4.40
2748 5042 2.216046 CGATACAGAACATGCATGGCT 58.784 47.619 29.41 22.18 0.00 4.75
2749 5043 3.181466 ACGATACAGAACATGCATGGCTA 60.181 43.478 29.41 12.92 0.00 3.93
2750 5044 3.999001 CGATACAGAACATGCATGGCTAT 59.001 43.478 29.41 17.76 0.00 2.97
2751 5045 4.092529 CGATACAGAACATGCATGGCTATC 59.907 45.833 29.41 21.56 0.00 2.08
2752 5046 3.572632 ACAGAACATGCATGGCTATCT 57.427 42.857 29.41 21.81 0.00 1.98
2753 5047 3.211865 ACAGAACATGCATGGCTATCTG 58.788 45.455 31.02 31.02 35.94 2.90
2754 5048 2.031069 CAGAACATGCATGGCTATCTGC 60.031 50.000 29.41 7.11 41.94 4.26
2757 5051 4.565360 TGCATGGCTATCTGCACC 57.435 55.556 0.00 0.00 43.11 5.01
2758 5052 1.917495 TGCATGGCTATCTGCACCT 59.083 52.632 0.00 0.00 43.11 4.00
2759 5053 0.179037 TGCATGGCTATCTGCACCTC 60.179 55.000 0.00 0.00 43.11 3.85
2760 5054 0.888285 GCATGGCTATCTGCACCTCC 60.888 60.000 0.00 0.00 45.15 4.30
2761 5055 0.602106 CATGGCTATCTGCACCTCCG 60.602 60.000 0.00 0.00 45.15 4.63
2762 5056 1.762522 ATGGCTATCTGCACCTCCGG 61.763 60.000 0.00 0.00 45.15 5.14
2763 5057 2.435693 GGCTATCTGCACCTCCGGT 61.436 63.158 0.00 0.00 45.15 5.28
2764 5058 1.068250 GCTATCTGCACCTCCGGTC 59.932 63.158 0.00 0.00 42.31 4.79
2765 5059 1.742768 CTATCTGCACCTCCGGTCC 59.257 63.158 0.00 0.00 31.02 4.46
2766 5060 1.001120 TATCTGCACCTCCGGTCCA 59.999 57.895 0.00 0.00 31.02 4.02
2767 5061 0.398522 TATCTGCACCTCCGGTCCAT 60.399 55.000 0.00 0.00 31.02 3.41
2768 5062 0.398522 ATCTGCACCTCCGGTCCATA 60.399 55.000 0.00 0.00 31.02 2.74
2769 5063 0.398522 TCTGCACCTCCGGTCCATAT 60.399 55.000 0.00 0.00 31.02 1.78
2770 5064 0.250038 CTGCACCTCCGGTCCATATG 60.250 60.000 0.00 0.00 31.02 1.78
2771 5065 0.689412 TGCACCTCCGGTCCATATGA 60.689 55.000 3.65 0.00 31.02 2.15
2772 5066 0.034059 GCACCTCCGGTCCATATGAG 59.966 60.000 3.65 0.00 31.02 2.90
2773 5067 1.704641 CACCTCCGGTCCATATGAGA 58.295 55.000 3.65 0.00 31.02 3.27
2774 5068 2.039418 CACCTCCGGTCCATATGAGAA 58.961 52.381 3.65 0.00 31.02 2.87
2775 5069 2.634940 CACCTCCGGTCCATATGAGAAT 59.365 50.000 3.65 0.00 31.02 2.40
2776 5070 2.900546 ACCTCCGGTCCATATGAGAATC 59.099 50.000 3.65 0.00 0.00 2.52
2777 5071 5.777321 CACCTCCGGTCCATATGAGAATCA 61.777 50.000 3.65 0.00 42.40 2.57
2778 5072 7.198978 CACCTCCGGTCCATATGAGAATCAA 62.199 48.000 3.65 0.00 41.65 2.57
2779 5073 8.897891 CACCTCCGGTCCATATGAGAATCAAG 62.898 50.000 3.65 0.00 41.65 3.02
2798 5092 3.872728 CGCAGCGCTGTCATGCAT 61.873 61.111 35.80 0.00 39.97 3.96
2799 5093 2.277949 GCAGCGCTGTCATGCATG 60.278 61.111 35.80 21.07 39.75 4.06
2800 5094 2.407616 CAGCGCTGTCATGCATGG 59.592 61.111 29.24 11.67 0.00 3.66
2801 5095 2.110352 CAGCGCTGTCATGCATGGA 61.110 57.895 29.24 12.38 0.00 3.41
2802 5096 2.110967 AGCGCTGTCATGCATGGAC 61.111 57.895 25.97 20.89 35.83 4.02
2803 5097 2.110967 GCGCTGTCATGCATGGACT 61.111 57.895 25.97 0.00 36.26 3.85
2804 5098 1.651240 GCGCTGTCATGCATGGACTT 61.651 55.000 25.97 0.00 36.26 3.01
2805 5099 1.655484 CGCTGTCATGCATGGACTTA 58.345 50.000 25.97 3.72 36.26 2.24
2806 5100 2.216046 CGCTGTCATGCATGGACTTAT 58.784 47.619 25.97 0.00 36.26 1.73
2807 5101 2.222678 CGCTGTCATGCATGGACTTATC 59.777 50.000 25.97 8.57 36.26 1.75
2808 5102 2.222678 GCTGTCATGCATGGACTTATCG 59.777 50.000 25.97 7.80 36.26 2.92
2809 5103 3.461061 CTGTCATGCATGGACTTATCGT 58.539 45.455 25.97 0.00 36.26 3.73
2810 5104 3.197265 TGTCATGCATGGACTTATCGTG 58.803 45.455 25.97 0.00 36.26 4.35
2811 5105 2.032549 GTCATGCATGGACTTATCGTGC 60.033 50.000 25.97 0.00 37.54 5.34
2812 5106 2.158914 TCATGCATGGACTTATCGTGCT 60.159 45.455 25.97 0.00 37.77 4.40
2813 5107 1.939974 TGCATGGACTTATCGTGCTC 58.060 50.000 9.25 0.00 37.77 4.26
2814 5108 1.206849 TGCATGGACTTATCGTGCTCA 59.793 47.619 9.25 0.00 37.77 4.26
2815 5109 2.279741 GCATGGACTTATCGTGCTCAA 58.720 47.619 0.00 0.00 35.43 3.02
2816 5110 2.286294 GCATGGACTTATCGTGCTCAAG 59.714 50.000 0.00 0.00 35.43 3.02
2817 5111 3.525537 CATGGACTTATCGTGCTCAAGT 58.474 45.455 0.00 0.00 35.27 3.16
2818 5112 3.678056 TGGACTTATCGTGCTCAAGTT 57.322 42.857 0.00 0.00 32.79 2.66
2819 5113 3.325870 TGGACTTATCGTGCTCAAGTTG 58.674 45.455 0.00 0.00 32.79 3.16
2820 5114 2.673368 GGACTTATCGTGCTCAAGTTGG 59.327 50.000 2.34 0.00 32.79 3.77
2821 5115 2.076863 ACTTATCGTGCTCAAGTTGGC 58.923 47.619 2.34 6.22 0.00 4.52
2822 5116 2.289694 ACTTATCGTGCTCAAGTTGGCT 60.290 45.455 14.71 1.29 0.00 4.75
2823 5117 3.056107 ACTTATCGTGCTCAAGTTGGCTA 60.056 43.478 14.71 4.42 0.00 3.93
2824 5118 2.698855 ATCGTGCTCAAGTTGGCTAT 57.301 45.000 14.71 6.02 0.00 2.97
2825 5119 3.819564 ATCGTGCTCAAGTTGGCTATA 57.180 42.857 14.71 3.89 0.00 1.31
2826 5120 3.819564 TCGTGCTCAAGTTGGCTATAT 57.180 42.857 14.71 0.00 0.00 0.86
2827 5121 4.929819 TCGTGCTCAAGTTGGCTATATA 57.070 40.909 14.71 0.00 0.00 0.86
2828 5122 5.468540 TCGTGCTCAAGTTGGCTATATAT 57.531 39.130 14.71 0.00 0.00 0.86
2869 5163 9.985318 CTTATCTTGTTGCTCATCTTCTTTTAG 57.015 33.333 0.00 0.00 0.00 1.85
2870 5164 9.725019 TTATCTTGTTGCTCATCTTCTTTTAGA 57.275 29.630 0.00 0.00 0.00 2.10
2871 5165 7.664082 TCTTGTTGCTCATCTTCTTTTAGAG 57.336 36.000 0.00 0.00 0.00 2.43
2872 5166 7.445121 TCTTGTTGCTCATCTTCTTTTAGAGA 58.555 34.615 0.00 0.00 0.00 3.10
2873 5167 7.601886 TCTTGTTGCTCATCTTCTTTTAGAGAG 59.398 37.037 0.00 0.00 35.37 3.20
2874 5168 6.997655 TGTTGCTCATCTTCTTTTAGAGAGA 58.002 36.000 0.00 0.00 35.37 3.10
2875 5169 7.619050 TGTTGCTCATCTTCTTTTAGAGAGAT 58.381 34.615 0.00 0.00 35.37 2.75
2876 5170 8.099537 TGTTGCTCATCTTCTTTTAGAGAGATT 58.900 33.333 0.00 0.00 35.37 2.40
2877 5171 8.945057 GTTGCTCATCTTCTTTTAGAGAGATTT 58.055 33.333 0.00 0.00 35.37 2.17
2878 5172 9.512588 TTGCTCATCTTCTTTTAGAGAGATTTT 57.487 29.630 0.00 0.00 35.37 1.82
2944 5238 0.320697 ACGTTAGAGGGCTTGGTGAC 59.679 55.000 0.00 0.00 0.00 3.67
3031 5327 0.540923 AGACCAAGCTGCAGGAGATC 59.459 55.000 17.12 0.00 0.00 2.75
3545 5845 0.467290 TGGGCTTTCTGAACACCACC 60.467 55.000 9.41 1.04 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 137 2.224314 CGTGCGCTGAGACAGATATAGA 59.776 50.000 9.73 0.00 32.44 1.98
146 147 0.248498 GTGCTATACGTGCGCTGAGA 60.248 55.000 9.73 0.00 37.87 3.27
194 195 1.376609 CCCGTGAGTTAGCATTGCCC 61.377 60.000 4.70 0.00 0.00 5.36
195 196 1.376609 CCCCGTGAGTTAGCATTGCC 61.377 60.000 4.70 0.00 0.00 4.52
196 197 1.376609 CCCCCGTGAGTTAGCATTGC 61.377 60.000 0.00 0.00 0.00 3.56
197 198 2.780595 CCCCCGTGAGTTAGCATTG 58.219 57.895 0.00 0.00 0.00 2.82
212 213 1.491274 TAAACTCCCCGTGAACCCCC 61.491 60.000 0.00 0.00 0.00 5.40
213 214 0.321919 GTAAACTCCCCGTGAACCCC 60.322 60.000 0.00 0.00 0.00 4.95
214 215 0.671472 CGTAAACTCCCCGTGAACCC 60.671 60.000 0.00 0.00 0.00 4.11
215 216 0.671472 CCGTAAACTCCCCGTGAACC 60.671 60.000 0.00 0.00 0.00 3.62
216 217 0.671472 CCCGTAAACTCCCCGTGAAC 60.671 60.000 0.00 0.00 0.00 3.18
217 218 1.120795 ACCCGTAAACTCCCCGTGAA 61.121 55.000 0.00 0.00 0.00 3.18
218 219 1.120795 AACCCGTAAACTCCCCGTGA 61.121 55.000 0.00 0.00 0.00 4.35
219 220 0.952010 CAACCCGTAAACTCCCCGTG 60.952 60.000 0.00 0.00 0.00 4.94
220 221 1.120795 TCAACCCGTAAACTCCCCGT 61.121 55.000 0.00 0.00 0.00 5.28
221 222 0.251073 ATCAACCCGTAAACTCCCCG 59.749 55.000 0.00 0.00 0.00 5.73
222 223 2.502142 AATCAACCCGTAAACTCCCC 57.498 50.000 0.00 0.00 0.00 4.81
223 224 4.582869 ACTTAATCAACCCGTAAACTCCC 58.417 43.478 0.00 0.00 0.00 4.30
224 225 7.854557 AATACTTAATCAACCCGTAAACTCC 57.145 36.000 0.00 0.00 0.00 3.85
225 226 9.591792 ACTAATACTTAATCAACCCGTAAACTC 57.408 33.333 0.00 0.00 0.00 3.01
226 227 9.374838 CACTAATACTTAATCAACCCGTAAACT 57.625 33.333 0.00 0.00 0.00 2.66
227 228 8.606602 CCACTAATACTTAATCAACCCGTAAAC 58.393 37.037 0.00 0.00 0.00 2.01
228 229 8.320617 ACCACTAATACTTAATCAACCCGTAAA 58.679 33.333 0.00 0.00 0.00 2.01
229 230 7.850193 ACCACTAATACTTAATCAACCCGTAA 58.150 34.615 0.00 0.00 0.00 3.18
230 231 7.422465 ACCACTAATACTTAATCAACCCGTA 57.578 36.000 0.00 0.00 0.00 4.02
231 232 6.303903 ACCACTAATACTTAATCAACCCGT 57.696 37.500 0.00 0.00 0.00 5.28
232 233 5.461078 CGACCACTAATACTTAATCAACCCG 59.539 44.000 0.00 0.00 0.00 5.28
233 234 5.756833 CCGACCACTAATACTTAATCAACCC 59.243 44.000 0.00 0.00 0.00 4.11
234 235 5.756833 CCCGACCACTAATACTTAATCAACC 59.243 44.000 0.00 0.00 0.00 3.77
235 236 6.576185 TCCCGACCACTAATACTTAATCAAC 58.424 40.000 0.00 0.00 0.00 3.18
236 237 6.795144 TCCCGACCACTAATACTTAATCAA 57.205 37.500 0.00 0.00 0.00 2.57
237 238 6.989155 ATCCCGACCACTAATACTTAATCA 57.011 37.500 0.00 0.00 0.00 2.57
238 239 9.768662 TTAAATCCCGACCACTAATACTTAATC 57.231 33.333 0.00 0.00 0.00 1.75
243 244 9.774413 CTTAATTAAATCCCGACCACTAATACT 57.226 33.333 0.00 0.00 0.00 2.12
244 245 8.996271 CCTTAATTAAATCCCGACCACTAATAC 58.004 37.037 0.00 0.00 0.00 1.89
245 246 8.716779 ACCTTAATTAAATCCCGACCACTAATA 58.283 33.333 0.00 0.00 0.00 0.98
246 247 7.580007 ACCTTAATTAAATCCCGACCACTAAT 58.420 34.615 0.00 0.00 0.00 1.73
247 248 6.961042 ACCTTAATTAAATCCCGACCACTAA 58.039 36.000 0.00 0.00 0.00 2.24
248 249 6.564557 ACCTTAATTAAATCCCGACCACTA 57.435 37.500 0.00 0.00 0.00 2.74
249 250 5.446260 ACCTTAATTAAATCCCGACCACT 57.554 39.130 0.00 0.00 0.00 4.00
250 251 5.163591 CCAACCTTAATTAAATCCCGACCAC 60.164 44.000 0.00 0.00 0.00 4.16
251 252 4.951094 CCAACCTTAATTAAATCCCGACCA 59.049 41.667 0.00 0.00 0.00 4.02
252 253 4.202080 GCCAACCTTAATTAAATCCCGACC 60.202 45.833 0.00 0.00 0.00 4.79
253 254 4.496840 CGCCAACCTTAATTAAATCCCGAC 60.497 45.833 0.00 0.00 0.00 4.79
254 255 3.628487 CGCCAACCTTAATTAAATCCCGA 59.372 43.478 0.00 0.00 0.00 5.14
255 256 3.243267 CCGCCAACCTTAATTAAATCCCG 60.243 47.826 0.00 0.00 0.00 5.14
256 257 3.069016 CCCGCCAACCTTAATTAAATCCC 59.931 47.826 0.00 0.00 0.00 3.85
257 258 3.491964 GCCCGCCAACCTTAATTAAATCC 60.492 47.826 0.00 0.00 0.00 3.01
258 259 3.491964 GGCCCGCCAACCTTAATTAAATC 60.492 47.826 0.00 0.00 35.81 2.17
259 260 2.432874 GGCCCGCCAACCTTAATTAAAT 59.567 45.455 0.00 0.00 35.81 1.40
260 261 1.826096 GGCCCGCCAACCTTAATTAAA 59.174 47.619 0.00 0.00 35.81 1.52
261 262 1.476477 GGCCCGCCAACCTTAATTAA 58.524 50.000 0.00 0.00 35.81 1.40
262 263 0.396001 GGGCCCGCCAACCTTAATTA 60.396 55.000 5.69 0.00 37.98 1.40
263 264 1.684391 GGGCCCGCCAACCTTAATT 60.684 57.895 5.69 0.00 37.98 1.40
264 265 2.043349 GGGCCCGCCAACCTTAAT 60.043 61.111 5.69 0.00 37.98 1.40
265 266 4.369837 GGGGCCCGCCAACCTTAA 62.370 66.667 17.79 0.00 37.98 1.85
269 270 4.894896 CTATGGGGCCCGCCAACC 62.895 72.222 19.83 0.00 37.98 3.77
270 271 2.273588 TAACTATGGGGCCCGCCAAC 62.274 60.000 19.83 0.88 37.98 3.77
271 272 1.572689 TTAACTATGGGGCCCGCCAA 61.573 55.000 19.83 0.00 37.98 4.52
272 273 1.572689 TTTAACTATGGGGCCCGCCA 61.573 55.000 19.83 9.88 37.98 5.69
273 274 0.396001 TTTTAACTATGGGGCCCGCC 60.396 55.000 19.83 2.70 0.00 6.13
274 275 1.611977 GATTTTAACTATGGGGCCCGC 59.388 52.381 19.83 9.75 0.00 6.13
275 276 2.938838 TGATTTTAACTATGGGGCCCG 58.061 47.619 19.83 6.19 0.00 6.13
276 277 3.641436 CCTTGATTTTAACTATGGGGCCC 59.359 47.826 18.17 18.17 0.00 5.80
277 278 3.641436 CCCTTGATTTTAACTATGGGGCC 59.359 47.826 0.00 0.00 0.00 5.80
278 279 3.641436 CCCCTTGATTTTAACTATGGGGC 59.359 47.826 0.00 0.00 45.34 5.80
280 281 5.137412 TCCCCCTTGATTTTAACTATGGG 57.863 43.478 0.00 0.00 0.00 4.00
281 282 7.675161 AATTCCCCCTTGATTTTAACTATGG 57.325 36.000 0.00 0.00 0.00 2.74
282 283 8.860088 CCTAATTCCCCCTTGATTTTAACTATG 58.140 37.037 0.00 0.00 0.00 2.23
283 284 8.797674 TCCTAATTCCCCCTTGATTTTAACTAT 58.202 33.333 0.00 0.00 0.00 2.12
284 285 8.177438 TCCTAATTCCCCCTTGATTTTAACTA 57.823 34.615 0.00 0.00 0.00 2.24
285 286 7.036132 TCTCCTAATTCCCCCTTGATTTTAACT 60.036 37.037 0.00 0.00 0.00 2.24
286 287 7.123383 TCTCCTAATTCCCCCTTGATTTTAAC 58.877 38.462 0.00 0.00 0.00 2.01
287 288 7.291991 TCTCCTAATTCCCCCTTGATTTTAA 57.708 36.000 0.00 0.00 0.00 1.52
288 289 6.918951 TCTCCTAATTCCCCCTTGATTTTA 57.081 37.500 0.00 0.00 0.00 1.52
289 290 5.813965 TCTCCTAATTCCCCCTTGATTTT 57.186 39.130 0.00 0.00 0.00 1.82
290 291 5.400653 CCATCTCCTAATTCCCCCTTGATTT 60.401 44.000 0.00 0.00 0.00 2.17
291 292 4.106987 CCATCTCCTAATTCCCCCTTGATT 59.893 45.833 0.00 0.00 0.00 2.57
292 293 3.659686 CCATCTCCTAATTCCCCCTTGAT 59.340 47.826 0.00 0.00 0.00 2.57
293 294 3.056080 CCATCTCCTAATTCCCCCTTGA 58.944 50.000 0.00 0.00 0.00 3.02
294 295 2.489802 GCCATCTCCTAATTCCCCCTTG 60.490 54.545 0.00 0.00 0.00 3.61
295 296 1.783365 GCCATCTCCTAATTCCCCCTT 59.217 52.381 0.00 0.00 0.00 3.95
296 297 1.346465 TGCCATCTCCTAATTCCCCCT 60.346 52.381 0.00 0.00 0.00 4.79
297 298 1.149101 TGCCATCTCCTAATTCCCCC 58.851 55.000 0.00 0.00 0.00 5.40
298 299 1.543429 CGTGCCATCTCCTAATTCCCC 60.543 57.143 0.00 0.00 0.00 4.81
299 300 1.141053 ACGTGCCATCTCCTAATTCCC 59.859 52.381 0.00 0.00 0.00 3.97
300 301 2.622064 ACGTGCCATCTCCTAATTCC 57.378 50.000 0.00 0.00 0.00 3.01
301 302 3.654414 CCTACGTGCCATCTCCTAATTC 58.346 50.000 0.00 0.00 0.00 2.17
302 303 2.224305 GCCTACGTGCCATCTCCTAATT 60.224 50.000 0.00 0.00 0.00 1.40
303 304 1.344763 GCCTACGTGCCATCTCCTAAT 59.655 52.381 0.00 0.00 0.00 1.73
304 305 0.750850 GCCTACGTGCCATCTCCTAA 59.249 55.000 0.00 0.00 0.00 2.69
305 306 2.426651 GCCTACGTGCCATCTCCTA 58.573 57.895 0.00 0.00 0.00 2.94
306 307 3.221222 GCCTACGTGCCATCTCCT 58.779 61.111 0.00 0.00 0.00 3.69
321 322 0.110486 TTCACCTTCAAGGAGTGGCC 59.890 55.000 11.59 0.00 37.67 5.36
322 323 1.528129 CTTCACCTTCAAGGAGTGGC 58.472 55.000 11.59 0.00 37.67 5.01
323 324 1.421646 ACCTTCACCTTCAAGGAGTGG 59.578 52.381 11.59 11.70 42.94 4.00
324 325 2.551071 GGACCTTCACCTTCAAGGAGTG 60.551 54.545 11.59 0.00 42.94 3.51
325 326 1.700186 GGACCTTCACCTTCAAGGAGT 59.300 52.381 11.59 0.00 42.94 3.85
326 327 1.699634 TGGACCTTCACCTTCAAGGAG 59.300 52.381 11.59 1.40 42.94 3.69
327 328 1.814429 TGGACCTTCACCTTCAAGGA 58.186 50.000 11.59 0.00 42.94 3.36
328 329 2.821969 CAATGGACCTTCACCTTCAAGG 59.178 50.000 0.22 0.22 45.41 3.61
329 330 3.754965 TCAATGGACCTTCACCTTCAAG 58.245 45.455 0.00 0.00 0.00 3.02
330 331 3.874383 TCAATGGACCTTCACCTTCAA 57.126 42.857 0.00 0.00 0.00 2.69
331 332 3.498481 CCTTCAATGGACCTTCACCTTCA 60.498 47.826 0.00 0.00 0.00 3.02
332 333 3.084786 CCTTCAATGGACCTTCACCTTC 58.915 50.000 0.00 0.00 0.00 3.46
333 334 2.819348 GCCTTCAATGGACCTTCACCTT 60.819 50.000 0.00 0.00 0.00 3.50
334 335 1.272147 GCCTTCAATGGACCTTCACCT 60.272 52.381 0.00 0.00 0.00 4.00
335 336 1.177401 GCCTTCAATGGACCTTCACC 58.823 55.000 0.00 0.00 0.00 4.02
336 337 1.815003 CTGCCTTCAATGGACCTTCAC 59.185 52.381 0.00 0.00 0.00 3.18
337 338 1.887956 GCTGCCTTCAATGGACCTTCA 60.888 52.381 0.00 0.00 0.00 3.02
338 339 0.813821 GCTGCCTTCAATGGACCTTC 59.186 55.000 0.00 0.00 0.00 3.46
339 340 0.613012 GGCTGCCTTCAATGGACCTT 60.613 55.000 12.43 0.00 0.00 3.50
340 341 1.000396 GGCTGCCTTCAATGGACCT 60.000 57.895 12.43 0.00 0.00 3.85
341 342 2.054453 GGGCTGCCTTCAATGGACC 61.054 63.158 19.68 0.00 0.00 4.46
342 343 2.409870 CGGGCTGCCTTCAATGGAC 61.410 63.158 19.68 0.00 0.00 4.02
343 344 2.045045 CGGGCTGCCTTCAATGGA 60.045 61.111 19.68 0.00 0.00 3.41
344 345 2.361610 ACGGGCTGCCTTCAATGG 60.362 61.111 19.68 2.25 0.00 3.16
345 346 1.651240 CTCACGGGCTGCCTTCAATG 61.651 60.000 19.68 9.83 0.00 2.82
346 347 1.377725 CTCACGGGCTGCCTTCAAT 60.378 57.895 19.68 0.00 0.00 2.57
347 348 2.032528 CTCACGGGCTGCCTTCAA 59.967 61.111 19.68 1.49 0.00 2.69
348 349 3.240134 GACTCACGGGCTGCCTTCA 62.240 63.158 19.68 0.00 0.00 3.02
349 350 1.605058 TAGACTCACGGGCTGCCTTC 61.605 60.000 19.68 1.23 33.70 3.46
350 351 1.608717 CTAGACTCACGGGCTGCCTT 61.609 60.000 19.68 2.77 33.70 4.35
351 352 2.037367 TAGACTCACGGGCTGCCT 59.963 61.111 19.68 0.00 33.70 4.75
352 353 1.035932 TACTAGACTCACGGGCTGCC 61.036 60.000 11.05 11.05 33.70 4.85
353 354 1.033574 ATACTAGACTCACGGGCTGC 58.966 55.000 0.00 0.00 33.70 5.25
354 355 4.082679 GGATAATACTAGACTCACGGGCTG 60.083 50.000 0.00 0.00 33.70 4.85
355 356 4.080687 GGATAATACTAGACTCACGGGCT 58.919 47.826 0.00 0.00 37.00 5.19
356 357 4.080687 AGGATAATACTAGACTCACGGGC 58.919 47.826 0.00 0.00 0.00 6.13
357 358 5.768662 TGAAGGATAATACTAGACTCACGGG 59.231 44.000 0.00 0.00 0.00 5.28
358 359 6.262496 TGTGAAGGATAATACTAGACTCACGG 59.738 42.308 0.00 0.00 0.00 4.94
359 360 7.260558 TGTGAAGGATAATACTAGACTCACG 57.739 40.000 0.00 0.00 0.00 4.35
360 361 8.467598 TGTTGTGAAGGATAATACTAGACTCAC 58.532 37.037 0.00 0.00 0.00 3.51
361 362 8.467598 GTGTTGTGAAGGATAATACTAGACTCA 58.532 37.037 0.00 0.00 0.00 3.41
362 363 8.467598 TGTGTTGTGAAGGATAATACTAGACTC 58.532 37.037 0.00 0.00 0.00 3.36
363 364 8.362464 TGTGTTGTGAAGGATAATACTAGACT 57.638 34.615 0.00 0.00 0.00 3.24
364 365 9.035607 CATGTGTTGTGAAGGATAATACTAGAC 57.964 37.037 0.00 0.00 0.00 2.59
365 366 8.758829 ACATGTGTTGTGAAGGATAATACTAGA 58.241 33.333 0.00 0.00 37.11 2.43
366 367 8.948631 ACATGTGTTGTGAAGGATAATACTAG 57.051 34.615 0.00 0.00 37.11 2.57
486 2584 4.659172 CCACGGAAAGCAGCCCCA 62.659 66.667 0.00 0.00 0.00 4.96
488 2586 2.747855 CTCCACGGAAAGCAGCCC 60.748 66.667 0.00 0.00 0.00 5.19
533 2631 5.473796 AAAAATTATACCCGTGCGTGTAG 57.526 39.130 0.00 0.00 0.00 2.74
534 2632 6.035866 CAGTAAAAATTATACCCGTGCGTGTA 59.964 38.462 0.00 0.00 0.00 2.90
535 2633 4.937015 AGTAAAAATTATACCCGTGCGTGT 59.063 37.500 0.00 0.00 0.00 4.49
536 2634 5.163834 ACAGTAAAAATTATACCCGTGCGTG 60.164 40.000 0.00 0.00 0.00 5.34
537 2635 4.937015 ACAGTAAAAATTATACCCGTGCGT 59.063 37.500 0.00 0.00 0.00 5.24
538 2636 5.163834 ACACAGTAAAAATTATACCCGTGCG 60.164 40.000 14.81 0.00 33.64 5.34
539 2637 6.185852 ACACAGTAAAAATTATACCCGTGC 57.814 37.500 14.81 0.00 33.64 5.34
540 2638 7.747357 GTGAACACAGTAAAAATTATACCCGTG 59.253 37.037 14.00 14.00 35.19 4.94
541 2639 7.360269 CGTGAACACAGTAAAAATTATACCCGT 60.360 37.037 5.80 0.00 0.00 5.28
542 2640 6.957077 CGTGAACACAGTAAAAATTATACCCG 59.043 38.462 5.80 0.00 0.00 5.28
543 2641 7.245604 CCGTGAACACAGTAAAAATTATACCC 58.754 38.462 5.80 0.00 0.00 3.69
544 2642 7.245604 CCCGTGAACACAGTAAAAATTATACC 58.754 38.462 5.80 0.00 0.00 2.73
545 2643 7.094677 ACCCCGTGAACACAGTAAAAATTATAC 60.095 37.037 5.80 0.00 0.00 1.47
546 2644 6.941436 ACCCCGTGAACACAGTAAAAATTATA 59.059 34.615 5.80 0.00 0.00 0.98
547 2645 5.771165 ACCCCGTGAACACAGTAAAAATTAT 59.229 36.000 5.80 0.00 0.00 1.28
548 2646 5.008811 CACCCCGTGAACACAGTAAAAATTA 59.991 40.000 5.80 0.00 35.23 1.40
549 2647 3.955551 ACCCCGTGAACACAGTAAAAATT 59.044 39.130 5.80 0.00 0.00 1.82
550 2648 3.316868 CACCCCGTGAACACAGTAAAAAT 59.683 43.478 5.80 0.00 35.23 1.82
551 2649 2.683867 CACCCCGTGAACACAGTAAAAA 59.316 45.455 5.80 0.00 35.23 1.94
552 2650 2.290464 CACCCCGTGAACACAGTAAAA 58.710 47.619 5.80 0.00 35.23 1.52
553 2651 1.475392 CCACCCCGTGAACACAGTAAA 60.475 52.381 5.80 0.00 35.23 2.01
554 2652 0.107081 CCACCCCGTGAACACAGTAA 59.893 55.000 5.80 0.00 35.23 2.24
555 2653 1.749665 CCACCCCGTGAACACAGTA 59.250 57.895 5.80 0.00 35.23 2.74
556 2654 2.508928 CCACCCCGTGAACACAGT 59.491 61.111 5.80 0.00 35.23 3.55
557 2655 2.958578 AAGCCACCCCGTGAACACAG 62.959 60.000 5.80 0.00 35.23 3.66
558 2656 1.697082 TAAGCCACCCCGTGAACACA 61.697 55.000 5.80 0.00 35.23 3.72
559 2657 0.953960 CTAAGCCACCCCGTGAACAC 60.954 60.000 0.00 0.00 35.23 3.32
560 2658 1.373435 CTAAGCCACCCCGTGAACA 59.627 57.895 0.00 0.00 35.23 3.18
561 2659 2.038837 GCTAAGCCACCCCGTGAAC 61.039 63.158 0.00 0.00 35.23 3.18
562 2660 2.221299 AGCTAAGCCACCCCGTGAA 61.221 57.895 0.00 0.00 35.23 3.18
563 2661 2.606519 AGCTAAGCCACCCCGTGA 60.607 61.111 0.00 0.00 35.23 4.35
564 2662 2.436646 CAGCTAAGCCACCCCGTG 60.437 66.667 0.00 0.00 0.00 4.94
565 2663 3.717294 CCAGCTAAGCCACCCCGT 61.717 66.667 0.00 0.00 0.00 5.28
566 2664 2.270874 ATTCCAGCTAAGCCACCCCG 62.271 60.000 0.00 0.00 0.00 5.73
567 2665 0.843984 TATTCCAGCTAAGCCACCCC 59.156 55.000 0.00 0.00 0.00 4.95
568 2666 2.298610 GTTATTCCAGCTAAGCCACCC 58.701 52.381 0.00 0.00 0.00 4.61
569 2667 2.999331 TGTTATTCCAGCTAAGCCACC 58.001 47.619 0.00 0.00 0.00 4.61
570 2668 4.199310 TCATGTTATTCCAGCTAAGCCAC 58.801 43.478 0.00 0.00 0.00 5.01
571 2669 4.502105 TCATGTTATTCCAGCTAAGCCA 57.498 40.909 0.00 0.00 0.00 4.75
572 2670 5.532406 TCAATCATGTTATTCCAGCTAAGCC 59.468 40.000 0.00 0.00 0.00 4.35
573 2671 6.484643 TCTCAATCATGTTATTCCAGCTAAGC 59.515 38.462 0.00 0.00 0.00 3.09
574 2672 7.930325 TCTCTCAATCATGTTATTCCAGCTAAG 59.070 37.037 0.00 0.00 0.00 2.18
575 2673 7.795047 TCTCTCAATCATGTTATTCCAGCTAA 58.205 34.615 0.00 0.00 0.00 3.09
576 2674 7.365497 TCTCTCAATCATGTTATTCCAGCTA 57.635 36.000 0.00 0.00 0.00 3.32
577 2675 6.244552 TCTCTCAATCATGTTATTCCAGCT 57.755 37.500 0.00 0.00 0.00 4.24
578 2676 6.932356 TTCTCTCAATCATGTTATTCCAGC 57.068 37.500 0.00 0.00 0.00 4.85
585 2683 9.942850 TCACACTTATTTCTCTCAATCATGTTA 57.057 29.630 0.00 0.00 0.00 2.41
586 2684 8.853077 TCACACTTATTTCTCTCAATCATGTT 57.147 30.769 0.00 0.00 0.00 2.71
587 2685 7.551974 CCTCACACTTATTTCTCTCAATCATGT 59.448 37.037 0.00 0.00 0.00 3.21
588 2686 7.012138 CCCTCACACTTATTTCTCTCAATCATG 59.988 40.741 0.00 0.00 0.00 3.07
589 2687 7.052873 CCCTCACACTTATTTCTCTCAATCAT 58.947 38.462 0.00 0.00 0.00 2.45
590 2688 6.409704 CCCTCACACTTATTTCTCTCAATCA 58.590 40.000 0.00 0.00 0.00 2.57
591 2689 5.819901 CCCCTCACACTTATTTCTCTCAATC 59.180 44.000 0.00 0.00 0.00 2.67
592 2690 5.749462 CCCCTCACACTTATTTCTCTCAAT 58.251 41.667 0.00 0.00 0.00 2.57
593 2691 4.565652 GCCCCTCACACTTATTTCTCTCAA 60.566 45.833 0.00 0.00 0.00 3.02
594 2692 3.055094 GCCCCTCACACTTATTTCTCTCA 60.055 47.826 0.00 0.00 0.00 3.27
595 2693 3.536570 GCCCCTCACACTTATTTCTCTC 58.463 50.000 0.00 0.00 0.00 3.20
596 2694 2.239907 GGCCCCTCACACTTATTTCTCT 59.760 50.000 0.00 0.00 0.00 3.10
597 2695 2.644676 GGCCCCTCACACTTATTTCTC 58.355 52.381 0.00 0.00 0.00 2.87
598 2696 1.285078 GGGCCCCTCACACTTATTTCT 59.715 52.381 12.23 0.00 0.00 2.52
599 2697 1.685180 GGGGCCCCTCACACTTATTTC 60.685 57.143 35.49 0.42 0.00 2.17
600 2698 0.335019 GGGGCCCCTCACACTTATTT 59.665 55.000 35.49 0.00 0.00 1.40
601 2699 0.849094 TGGGGCCCCTCACACTTATT 60.849 55.000 40.66 0.00 36.94 1.40
602 2700 1.230149 TGGGGCCCCTCACACTTAT 60.230 57.895 40.66 0.00 36.94 1.73
603 2701 2.208640 TGGGGCCCCTCACACTTA 59.791 61.111 40.66 16.48 36.94 2.24
604 2702 3.580319 GTGGGGCCCCTCACACTT 61.580 66.667 40.66 0.00 36.94 3.16
605 2703 4.918360 TGTGGGGCCCCTCACACT 62.918 66.667 40.66 0.00 38.75 3.55
614 2712 2.389313 TTTTTAGGGGGTGTGGGGCC 62.389 60.000 0.00 0.00 0.00 5.80
615 2713 0.252513 ATTTTTAGGGGGTGTGGGGC 60.253 55.000 0.00 0.00 0.00 5.80
616 2714 1.077993 TGATTTTTAGGGGGTGTGGGG 59.922 52.381 0.00 0.00 0.00 4.96
617 2715 2.456577 CTGATTTTTAGGGGGTGTGGG 58.543 52.381 0.00 0.00 0.00 4.61
618 2716 2.456577 CCTGATTTTTAGGGGGTGTGG 58.543 52.381 0.00 0.00 0.00 4.17
638 2736 2.322252 TAATCTCCGTCCCCTCCCCC 62.322 65.000 0.00 0.00 0.00 5.40
639 2737 0.832559 CTAATCTCCGTCCCCTCCCC 60.833 65.000 0.00 0.00 0.00 4.81
640 2738 0.105607 ACTAATCTCCGTCCCCTCCC 60.106 60.000 0.00 0.00 0.00 4.30
641 2739 1.790818 AACTAATCTCCGTCCCCTCC 58.209 55.000 0.00 0.00 0.00 4.30
642 2740 3.243334 CGTTAACTAATCTCCGTCCCCTC 60.243 52.174 3.71 0.00 0.00 4.30
643 2741 2.692041 CGTTAACTAATCTCCGTCCCCT 59.308 50.000 3.71 0.00 0.00 4.79
644 2742 2.689983 TCGTTAACTAATCTCCGTCCCC 59.310 50.000 3.71 0.00 0.00 4.81
645 2743 4.357996 CTTCGTTAACTAATCTCCGTCCC 58.642 47.826 3.71 0.00 0.00 4.46
646 2744 4.096984 TCCTTCGTTAACTAATCTCCGTCC 59.903 45.833 3.71 0.00 0.00 4.79
647 2745 5.163673 ACTCCTTCGTTAACTAATCTCCGTC 60.164 44.000 3.71 0.00 0.00 4.79
648 2746 4.704057 ACTCCTTCGTTAACTAATCTCCGT 59.296 41.667 3.71 0.00 0.00 4.69
649 2747 5.246145 ACTCCTTCGTTAACTAATCTCCG 57.754 43.478 3.71 0.00 0.00 4.63
650 2748 5.590145 GGACTCCTTCGTTAACTAATCTCC 58.410 45.833 3.71 0.00 0.00 3.71
651 2749 5.163673 ACGGACTCCTTCGTTAACTAATCTC 60.164 44.000 3.71 0.00 36.04 2.75
652 2750 4.704057 ACGGACTCCTTCGTTAACTAATCT 59.296 41.667 3.71 0.00 36.04 2.40
653 2751 4.991472 ACGGACTCCTTCGTTAACTAATC 58.009 43.478 3.71 0.00 36.04 1.75
654 2752 6.515272 TTACGGACTCCTTCGTTAACTAAT 57.485 37.500 3.71 0.00 40.31 1.73
655 2753 5.957842 TTACGGACTCCTTCGTTAACTAA 57.042 39.130 3.71 0.00 40.31 2.24
656 2754 5.699839 GTTTACGGACTCCTTCGTTAACTA 58.300 41.667 3.71 0.00 42.09 2.24
657 2755 4.279420 AGTTTACGGACTCCTTCGTTAACT 59.721 41.667 12.33 12.33 46.82 2.24
658 2756 4.550422 AGTTTACGGACTCCTTCGTTAAC 58.450 43.478 8.89 8.89 44.13 2.01
659 2757 4.798574 GAGTTTACGGACTCCTTCGTTAA 58.201 43.478 4.97 0.00 40.10 2.01
660 2758 4.425577 GAGTTTACGGACTCCTTCGTTA 57.574 45.455 4.97 0.00 40.10 3.18
661 2759 3.294816 GAGTTTACGGACTCCTTCGTT 57.705 47.619 4.97 0.00 40.10 3.85
668 2766 1.463674 TACGGGGAGTTTACGGACTC 58.536 55.000 7.17 7.17 44.20 3.36
669 2767 2.149973 ATACGGGGAGTTTACGGACT 57.850 50.000 0.00 0.00 0.00 3.85
670 2768 2.967599 AATACGGGGAGTTTACGGAC 57.032 50.000 0.00 0.00 0.00 4.79
671 2769 3.631250 ACTAATACGGGGAGTTTACGGA 58.369 45.455 0.00 0.00 0.00 4.69
672 2770 3.243535 GGACTAATACGGGGAGTTTACGG 60.244 52.174 0.00 0.00 0.00 4.02
673 2771 3.548818 CGGACTAATACGGGGAGTTTACG 60.549 52.174 0.00 0.00 0.00 3.18
674 2772 3.381590 ACGGACTAATACGGGGAGTTTAC 59.618 47.826 0.00 0.00 35.98 2.01
675 2773 3.381272 CACGGACTAATACGGGGAGTTTA 59.619 47.826 0.00 0.00 35.98 2.01
676 2774 2.167075 CACGGACTAATACGGGGAGTTT 59.833 50.000 0.00 0.00 35.98 2.66
677 2775 1.753073 CACGGACTAATACGGGGAGTT 59.247 52.381 0.00 0.00 35.98 3.01
678 2776 1.396653 CACGGACTAATACGGGGAGT 58.603 55.000 0.00 0.00 35.98 3.85
679 2777 0.031721 GCACGGACTAATACGGGGAG 59.968 60.000 0.00 0.00 35.39 4.30
680 2778 1.727511 CGCACGGACTAATACGGGGA 61.728 60.000 0.00 0.00 35.39 4.81
681 2779 1.299620 CGCACGGACTAATACGGGG 60.300 63.158 0.00 0.00 35.39 5.73
682 2780 0.179129 AACGCACGGACTAATACGGG 60.179 55.000 0.00 0.00 39.28 5.28
683 2781 1.632422 AAACGCACGGACTAATACGG 58.368 50.000 0.00 0.00 35.98 4.02
684 2782 3.683989 TCTAAACGCACGGACTAATACG 58.316 45.455 0.00 0.00 38.54 3.06
685 2783 6.579491 AATTCTAAACGCACGGACTAATAC 57.421 37.500 0.00 0.00 0.00 1.89
686 2784 7.463119 CGAAAATTCTAAACGCACGGACTAATA 60.463 37.037 0.00 0.00 0.00 0.98
687 2785 6.490566 AAAATTCTAAACGCACGGACTAAT 57.509 33.333 0.00 0.00 0.00 1.73
688 2786 5.388682 CGAAAATTCTAAACGCACGGACTAA 60.389 40.000 0.00 0.00 0.00 2.24
689 2787 4.090354 CGAAAATTCTAAACGCACGGACTA 59.910 41.667 0.00 0.00 0.00 2.59
690 2788 3.120786 CGAAAATTCTAAACGCACGGACT 60.121 43.478 0.00 0.00 0.00 3.85
691 2789 3.120923 TCGAAAATTCTAAACGCACGGAC 60.121 43.478 0.00 0.00 0.00 4.79
692 2790 3.058450 TCGAAAATTCTAAACGCACGGA 58.942 40.909 0.00 0.00 0.00 4.69
693 2791 3.443054 TCGAAAATTCTAAACGCACGG 57.557 42.857 0.00 0.00 0.00 4.94
694 2792 3.596562 GGTTCGAAAATTCTAAACGCACG 59.403 43.478 0.00 0.00 0.00 5.34
695 2793 4.529446 TGGTTCGAAAATTCTAAACGCAC 58.471 39.130 0.00 0.00 0.00 5.34
696 2794 4.815040 TGGTTCGAAAATTCTAAACGCA 57.185 36.364 0.00 0.00 0.00 5.24
697 2795 5.283012 GTCATGGTTCGAAAATTCTAAACGC 59.717 40.000 0.00 0.00 0.00 4.84
698 2796 5.793457 GGTCATGGTTCGAAAATTCTAAACG 59.207 40.000 0.00 0.00 0.00 3.60
699 2797 6.674066 TGGTCATGGTTCGAAAATTCTAAAC 58.326 36.000 0.00 0.00 0.00 2.01
700 2798 6.885952 TGGTCATGGTTCGAAAATTCTAAA 57.114 33.333 0.00 0.00 0.00 1.85
701 2799 6.657117 TCATGGTCATGGTTCGAAAATTCTAA 59.343 34.615 0.00 0.00 39.24 2.10
702 2800 6.176896 TCATGGTCATGGTTCGAAAATTCTA 58.823 36.000 0.00 0.00 39.24 2.10
703 2801 5.009631 TCATGGTCATGGTTCGAAAATTCT 58.990 37.500 0.00 0.00 39.24 2.40
704 2802 5.309323 TCATGGTCATGGTTCGAAAATTC 57.691 39.130 0.00 0.00 39.24 2.17
705 2803 4.158394 CCTCATGGTCATGGTTCGAAAATT 59.842 41.667 0.00 0.00 39.24 1.82
706 2804 3.696051 CCTCATGGTCATGGTTCGAAAAT 59.304 43.478 0.00 0.00 39.24 1.82
707 2805 3.081061 CCTCATGGTCATGGTTCGAAAA 58.919 45.455 0.00 0.00 39.24 2.29
708 2806 2.039746 ACCTCATGGTCATGGTTCGAAA 59.960 45.455 0.00 0.00 44.78 3.46
709 2807 1.628340 ACCTCATGGTCATGGTTCGAA 59.372 47.619 10.61 0.00 44.78 3.71
710 2808 1.275666 ACCTCATGGTCATGGTTCGA 58.724 50.000 10.61 0.00 44.78 3.71
711 2809 3.861341 ACCTCATGGTCATGGTTCG 57.139 52.632 10.61 0.22 44.78 3.95
906 3074 1.430632 GTGTGATGGATTGGCTGCG 59.569 57.895 0.00 0.00 0.00 5.18
1446 3706 1.078214 GTAGCTGATGGCACTGGCA 60.078 57.895 7.88 7.88 44.79 4.92
1530 3793 6.218019 ACAAACTAAATGCTGTACGAGTACA 58.782 36.000 14.45 14.45 43.14 2.90
1534 3797 5.390567 GGGAACAAACTAAATGCTGTACGAG 60.391 44.000 0.00 0.00 0.00 4.18
1535 3798 4.453136 GGGAACAAACTAAATGCTGTACGA 59.547 41.667 0.00 0.00 0.00 3.43
1544 3811 4.827284 CACTGAGTGGGGAACAAACTAAAT 59.173 41.667 4.28 0.00 0.00 1.40
1635 3909 2.755103 TCAGATAAGAGCTTCGAGCACA 59.245 45.455 9.09 0.00 45.56 4.57
1636 3910 3.428746 TCAGATAAGAGCTTCGAGCAC 57.571 47.619 9.09 3.55 45.56 4.40
1639 3913 4.981674 GGACATTCAGATAAGAGCTTCGAG 59.018 45.833 0.00 0.00 0.00 4.04
1673 3953 4.377708 TGCTCGGCATCTGCACGT 62.378 61.111 4.33 0.00 44.36 4.49
2227 4508 4.100084 CAGGACGCCATGAGCCCA 62.100 66.667 0.00 0.00 38.78 5.36
2453 4734 1.609555 GATCTCCGTGATAAGCTCCGT 59.390 52.381 0.00 0.00 35.14 4.69
2457 4738 3.234353 TCCATGATCTCCGTGATAAGCT 58.766 45.455 0.00 0.00 35.14 3.74
2733 5027 2.031069 GCAGATAGCCATGCATGTTCTG 60.031 50.000 26.03 26.03 42.11 3.02
2743 5037 1.750930 CGGAGGTGCAGATAGCCAT 59.249 57.895 0.00 0.00 44.83 4.40
2744 5038 3.220222 CGGAGGTGCAGATAGCCA 58.780 61.111 0.00 0.00 44.83 4.75
2757 5051 4.562347 CCTTGATTCTCATATGGACCGGAG 60.562 50.000 9.46 0.00 0.00 4.63
2758 5052 3.324846 CCTTGATTCTCATATGGACCGGA 59.675 47.826 9.46 0.00 0.00 5.14
2759 5053 3.668447 CCTTGATTCTCATATGGACCGG 58.332 50.000 0.00 0.00 0.00 5.28
2760 5054 3.070018 GCCTTGATTCTCATATGGACCG 58.930 50.000 2.13 0.00 0.00 4.79
2761 5055 3.070018 CGCCTTGATTCTCATATGGACC 58.930 50.000 2.13 0.00 0.00 4.46
2762 5056 2.481952 GCGCCTTGATTCTCATATGGAC 59.518 50.000 2.13 0.00 0.00 4.02
2763 5057 2.104622 TGCGCCTTGATTCTCATATGGA 59.895 45.455 4.18 0.00 0.00 3.41
2764 5058 2.483106 CTGCGCCTTGATTCTCATATGG 59.517 50.000 4.18 0.00 0.00 2.74
2765 5059 2.095869 GCTGCGCCTTGATTCTCATATG 60.096 50.000 4.18 0.00 0.00 1.78
2766 5060 2.149578 GCTGCGCCTTGATTCTCATAT 58.850 47.619 4.18 0.00 0.00 1.78
2767 5061 1.586422 GCTGCGCCTTGATTCTCATA 58.414 50.000 4.18 0.00 0.00 2.15
2768 5062 1.434622 CGCTGCGCCTTGATTCTCAT 61.435 55.000 9.88 0.00 0.00 2.90
2769 5063 2.102438 CGCTGCGCCTTGATTCTCA 61.102 57.895 9.88 0.00 0.00 3.27
2770 5064 2.705826 CGCTGCGCCTTGATTCTC 59.294 61.111 9.88 0.00 0.00 2.87
2781 5075 3.872728 ATGCATGACAGCGCTGCG 61.873 61.111 36.28 22.51 38.75 5.18
2782 5076 2.277949 CATGCATGACAGCGCTGC 60.278 61.111 36.28 27.34 37.31 5.25
2783 5077 2.110352 TCCATGCATGACAGCGCTG 61.110 57.895 34.89 34.89 37.31 5.18
2784 5078 2.110967 GTCCATGCATGACAGCGCT 61.111 57.895 28.31 2.64 37.31 5.92
2785 5079 1.651240 AAGTCCATGCATGACAGCGC 61.651 55.000 28.31 0.00 37.31 5.92
2786 5080 1.655484 TAAGTCCATGCATGACAGCG 58.345 50.000 28.31 10.81 37.31 5.18
2787 5081 2.222678 CGATAAGTCCATGCATGACAGC 59.777 50.000 28.31 13.75 0.00 4.40
2788 5082 3.246936 CACGATAAGTCCATGCATGACAG 59.753 47.826 28.31 11.58 0.00 3.51
2789 5083 3.197265 CACGATAAGTCCATGCATGACA 58.803 45.455 28.31 11.17 0.00 3.58
2790 5084 2.032549 GCACGATAAGTCCATGCATGAC 60.033 50.000 28.31 21.45 34.61 3.06
2791 5085 2.158914 AGCACGATAAGTCCATGCATGA 60.159 45.455 28.31 11.26 36.11 3.07
2792 5086 2.216046 AGCACGATAAGTCCATGCATG 58.784 47.619 20.19 20.19 36.11 4.06
2793 5087 2.158914 TGAGCACGATAAGTCCATGCAT 60.159 45.455 0.00 0.00 36.11 3.96
2794 5088 1.206849 TGAGCACGATAAGTCCATGCA 59.793 47.619 0.00 0.00 36.11 3.96
2795 5089 1.939974 TGAGCACGATAAGTCCATGC 58.060 50.000 0.00 0.00 34.66 4.06
2796 5090 3.525537 ACTTGAGCACGATAAGTCCATG 58.474 45.455 0.00 0.00 29.12 3.66
2797 5091 3.895232 ACTTGAGCACGATAAGTCCAT 57.105 42.857 0.00 0.00 29.12 3.41
2798 5092 3.325870 CAACTTGAGCACGATAAGTCCA 58.674 45.455 0.00 0.00 33.82 4.02
2799 5093 2.673368 CCAACTTGAGCACGATAAGTCC 59.327 50.000 0.00 0.00 33.82 3.85
2800 5094 2.094417 GCCAACTTGAGCACGATAAGTC 59.906 50.000 0.00 0.00 33.82 3.01
2801 5095 2.076863 GCCAACTTGAGCACGATAAGT 58.923 47.619 0.00 0.00 36.29 2.24
2802 5096 2.350522 AGCCAACTTGAGCACGATAAG 58.649 47.619 0.00 0.00 0.00 1.73
2803 5097 2.472695 AGCCAACTTGAGCACGATAA 57.527 45.000 0.00 0.00 0.00 1.75
2804 5098 3.819564 ATAGCCAACTTGAGCACGATA 57.180 42.857 0.00 0.00 0.00 2.92
2805 5099 2.698855 ATAGCCAACTTGAGCACGAT 57.301 45.000 0.00 0.00 0.00 3.73
2806 5100 3.819564 ATATAGCCAACTTGAGCACGA 57.180 42.857 0.00 0.00 0.00 4.35
2807 5101 6.813649 ACATATATATAGCCAACTTGAGCACG 59.186 38.462 0.00 0.00 0.00 5.34
2808 5102 7.819415 TGACATATATATAGCCAACTTGAGCAC 59.181 37.037 0.00 0.00 0.00 4.40
2809 5103 7.906327 TGACATATATATAGCCAACTTGAGCA 58.094 34.615 0.00 0.00 0.00 4.26
2810 5104 8.037758 ACTGACATATATATAGCCAACTTGAGC 58.962 37.037 0.00 0.00 0.00 4.26
2811 5105 9.579768 GACTGACATATATATAGCCAACTTGAG 57.420 37.037 0.00 0.00 0.00 3.02
2812 5106 9.314133 AGACTGACATATATATAGCCAACTTGA 57.686 33.333 0.00 0.00 0.00 3.02
2813 5107 9.935241 AAGACTGACATATATATAGCCAACTTG 57.065 33.333 0.00 0.00 0.00 3.16
2818 5112 9.480861 AGCTAAAGACTGACATATATATAGCCA 57.519 33.333 0.00 0.00 34.15 4.75
2828 5122 9.371136 CAACAAGATAAGCTAAAGACTGACATA 57.629 33.333 0.00 0.00 0.00 2.29
2869 5163 3.202097 GCTCCAGGCAGTAAAATCTCTC 58.798 50.000 0.00 0.00 41.35 3.20
2870 5164 2.092699 GGCTCCAGGCAGTAAAATCTCT 60.093 50.000 0.00 0.00 44.01 3.10
2871 5165 2.293170 GGCTCCAGGCAGTAAAATCTC 58.707 52.381 0.00 0.00 44.01 2.75
2872 5166 1.635487 TGGCTCCAGGCAGTAAAATCT 59.365 47.619 0.00 0.00 46.12 2.40
2873 5167 2.128771 TGGCTCCAGGCAGTAAAATC 57.871 50.000 0.00 0.00 46.12 2.17
2944 5238 2.143122 ACCAGCGTACATTTGTCAGTG 58.857 47.619 0.00 0.00 0.00 3.66
3031 5327 3.918220 GCTGCCTTCATCGCGTCG 61.918 66.667 5.77 0.00 0.00 5.12
3516 5816 2.158325 TCAGAAAGCCCAGGTTCCAATT 60.158 45.455 0.00 0.00 0.00 2.32
3545 5845 3.200593 GCTGTCAGGGCAGATGCG 61.201 66.667 4.84 0.00 43.26 4.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.