Multiple sequence alignment - TraesCS6D01G309700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G309700 chr6D 100.000 6504 0 0 1 6504 420008696 420015199 0.000000e+00 12011.0
1 TraesCS6D01G309700 chr6D 96.364 220 7 1 3685 3904 420012167 420012385 1.720000e-95 361.0
2 TraesCS6D01G309700 chr6D 96.364 220 7 1 3472 3690 420012380 420012599 1.720000e-95 361.0
3 TraesCS6D01G309700 chr6D 95.238 210 9 1 371 579 237189633 237189424 1.350000e-86 331.0
4 TraesCS6D01G309700 chr6D 89.720 107 11 0 255 361 420008910 420009016 3.160000e-28 137.0
5 TraesCS6D01G309700 chr6D 89.720 107 11 0 215 321 420008950 420009056 3.160000e-28 137.0
6 TraesCS6D01G309700 chr6D 86.250 80 10 1 858 937 420009517 420009595 1.160000e-12 86.1
7 TraesCS6D01G309700 chr6D 86.250 80 10 1 822 900 420009553 420009632 1.160000e-12 86.1
8 TraesCS6D01G309700 chr6D 97.500 40 1 0 3959 3998 420012616 420012655 1.170000e-07 69.4
9 TraesCS6D01G309700 chr6D 97.500 40 1 0 3921 3960 420012654 420012693 1.170000e-07 69.4
10 TraesCS6D01G309700 chr6B 91.246 2833 156 44 886 3690 632961949 632964717 0.000000e+00 3773.0
11 TraesCS6D01G309700 chr6B 95.743 1574 51 10 3685 5254 632964499 632966060 0.000000e+00 2521.0
12 TraesCS6D01G309700 chr6B 88.719 1179 68 26 5347 6504 632966059 632967193 0.000000e+00 1380.0
13 TraesCS6D01G309700 chr6B 84.015 269 11 8 574 834 632961721 632961965 5.070000e-56 230.0
14 TraesCS6D01G309700 chr6B 94.118 102 5 1 5252 5352 219879446 219879345 3.140000e-33 154.0
15 TraesCS6D01G309700 chr6B 92.661 109 5 3 5244 5351 633054121 633054015 3.140000e-33 154.0
16 TraesCS6D01G309700 chr6B 82.759 116 15 4 5106 5219 646201686 646201798 1.490000e-16 99.0
17 TraesCS6D01G309700 chr6B 95.000 40 2 0 3959 3998 632964734 632964773 5.440000e-06 63.9
18 TraesCS6D01G309700 chr6A 96.898 1386 25 11 3878 5254 563129547 563130923 0.000000e+00 2305.0
19 TraesCS6D01G309700 chr6A 93.315 1421 72 11 886 2298 563126508 563127913 0.000000e+00 2076.0
20 TraesCS6D01G309700 chr6A 97.545 1222 15 6 2293 3506 563127991 563129205 0.000000e+00 2076.0
21 TraesCS6D01G309700 chr6A 93.447 1175 42 12 5347 6504 563130911 563132067 0.000000e+00 1711.0
22 TraesCS6D01G309700 chr6A 90.402 323 29 2 1 321 563123973 563124295 2.170000e-114 424.0
23 TraesCS6D01G309700 chr6A 98.734 158 2 0 3649 3806 563129392 563129549 1.380000e-71 281.0
24 TraesCS6D01G309700 chr6A 83.553 304 15 14 575 853 563126256 563126549 1.080000e-62 252.0
25 TraesCS6D01G309700 chr6A 97.541 122 2 1 3472 3592 563129428 563129549 2.380000e-49 207.0
26 TraesCS6D01G309700 chr6A 98.913 92 0 1 3563 3653 563129200 563129291 5.220000e-36 163.0
27 TraesCS6D01G309700 chr6A 96.739 92 2 1 3777 3867 563129200 563129291 1.130000e-32 152.0
28 TraesCS6D01G309700 chr6A 85.345 116 16 1 256 370 563124190 563124305 1.150000e-22 119.0
29 TraesCS6D01G309700 chr6A 97.500 40 1 0 3959 3998 563129590 563129629 1.170000e-07 69.4
30 TraesCS6D01G309700 chr6A 95.000 40 2 0 3921 3960 563129628 563129667 5.440000e-06 63.9
31 TraesCS6D01G309700 chr4B 84.398 532 56 19 1329 1850 67368706 67368192 1.260000e-136 497.0
32 TraesCS6D01G309700 chr4B 91.892 111 8 1 5108 5217 30729289 30729179 3.140000e-33 154.0
33 TraesCS6D01G309700 chr1B 83.239 531 62 21 1330 1850 38749949 38749436 4.590000e-126 462.0
34 TraesCS6D01G309700 chr1B 91.525 59 5 0 1776 1834 160491102 160491160 1.500000e-11 82.4
35 TraesCS6D01G309700 chr2B 85.327 443 54 8 1414 1850 753389254 753389691 1.290000e-121 448.0
36 TraesCS6D01G309700 chr2B 81.616 359 42 15 1329 1680 775265566 775265907 6.420000e-70 276.0
37 TraesCS6D01G309700 chr2B 93.939 132 8 0 6232 6363 726456045 726456176 3.980000e-47 200.0
38 TraesCS6D01G309700 chr2B 86.408 103 14 0 5117 5219 169856253 169856151 5.330000e-21 113.0
39 TraesCS6D01G309700 chr2D 96.618 207 7 0 371 577 172735456 172735250 1.740000e-90 344.0
40 TraesCS6D01G309700 chr2D 96.117 206 7 1 371 575 375370858 375371063 1.040000e-87 335.0
41 TraesCS6D01G309700 chr2D 96.212 132 5 0 6232 6363 396726136 396726005 3.950000e-52 217.0
42 TraesCS6D01G309700 chr2D 94.231 104 4 2 5253 5354 609331814 609331917 2.430000e-34 158.0
43 TraesCS6D01G309700 chr2D 81.667 120 20 2 5104 5222 473292191 473292309 1.490000e-16 99.0
44 TraesCS6D01G309700 chr7D 96.154 208 8 0 371 578 53410089 53409882 2.250000e-89 340.0
45 TraesCS6D01G309700 chr7D 95.652 207 9 0 371 577 531437494 531437288 3.760000e-87 333.0
46 TraesCS6D01G309700 chr7D 95.215 209 10 0 371 579 487317799 487318007 1.350000e-86 331.0
47 TraesCS6D01G309700 chr7D 96.000 100 3 1 5253 5351 168427393 168427492 1.880000e-35 161.0
48 TraesCS6D01G309700 chr1D 96.098 205 8 0 371 575 491986214 491986418 1.040000e-87 335.0
49 TraesCS6D01G309700 chr1D 93.939 132 8 0 6232 6363 52102873 52103004 3.980000e-47 200.0
50 TraesCS6D01G309700 chr3D 95.652 207 9 0 371 577 395050415 395050621 3.760000e-87 333.0
51 TraesCS6D01G309700 chr3D 95.652 207 9 0 371 577 576855081 576855287 3.760000e-87 333.0
52 TraesCS6D01G309700 chr3D 94.697 132 7 0 6232 6363 424687097 424686966 8.550000e-49 206.0
53 TraesCS6D01G309700 chr5D 96.212 132 5 0 6232 6363 482311555 482311424 3.950000e-52 217.0
54 TraesCS6D01G309700 chr5D 95.455 132 6 0 6232 6363 482311912 482312043 1.840000e-50 211.0
55 TraesCS6D01G309700 chr5D 93.939 132 8 0 6232 6363 307933807 307933938 3.980000e-47 200.0
56 TraesCS6D01G309700 chr5D 96.000 100 3 1 5253 5351 301216205 301216106 1.880000e-35 161.0
57 TraesCS6D01G309700 chr5D 95.050 101 4 1 5252 5351 266749355 266749455 2.430000e-34 158.0
58 TraesCS6D01G309700 chr4D 90.678 118 9 2 5105 5220 18693546 18693429 8.730000e-34 156.0
59 TraesCS6D01G309700 chr4D 95.000 100 4 1 5252 5350 375382013 375381914 8.730000e-34 156.0
60 TraesCS6D01G309700 chr3A 92.661 109 6 2 5246 5352 287684790 287684682 8.730000e-34 156.0
61 TraesCS6D01G309700 chr2A 93.333 105 6 1 5249 5352 416627470 416627574 3.140000e-33 154.0
62 TraesCS6D01G309700 chr7B 89.091 110 8 3 5110 5217 513654311 513654204 4.090000e-27 134.0
63 TraesCS6D01G309700 chr7A 85.714 112 15 1 5107 5217 257126095 257125984 4.120000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G309700 chr6D 420008696 420015199 6503 False 12011.000000 12011 100.000000 1 6504 1 chr6D.!!$F1 6503
1 TraesCS6D01G309700 chr6B 632961721 632967193 5472 False 1593.580000 3773 90.944600 574 6504 5 chr6B.!!$F2 5930
2 TraesCS6D01G309700 chr6A 563123973 563132067 8094 False 761.484615 2305 94.225538 1 6504 13 chr6A.!!$F1 6503
3 TraesCS6D01G309700 chr4B 67368192 67368706 514 True 497.000000 497 84.398000 1329 1850 1 chr4B.!!$R2 521
4 TraesCS6D01G309700 chr1B 38749436 38749949 513 True 462.000000 462 83.239000 1330 1850 1 chr1B.!!$R1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
953 2722 0.247736 CGTTCCCAGCTCTAGCAGTT 59.752 55.0 4.54 0.00 45.16 3.16 F
1415 3199 0.899720 TACAACGAACCTAGGGCCTG 59.100 55.0 18.53 2.03 0.00 4.85 F
3231 5128 0.322456 TCTCCATTGGGAAGCAACCG 60.322 55.0 2.09 0.00 44.38 4.44 F
3824 5829 0.038892 GCCTGCTGTTGATTGGTGTG 60.039 55.0 0.00 0.00 0.00 3.82 F
3852 5857 0.239082 TGAGTGCGAGCAAAGCATTG 59.761 50.0 0.00 0.00 46.96 2.82 F
5275 7288 0.033503 CCCTCCGCCCCAAAATAAGT 60.034 55.0 0.00 0.00 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2143 3939 1.332065 CGGCACACACATGTTGTAACA 59.668 47.619 11.61 0.0 44.06 2.41 R
3355 5255 2.170187 AGAAGGCACAAGATCTGCTAGG 59.830 50.000 0.00 0.0 34.84 3.02 R
4129 6134 2.860735 GTGTATTCTCTTGCTGGTAGCG 59.139 50.000 0.00 0.0 46.26 4.26 R
5256 7269 0.033503 ACTTATTTTGGGGCGGAGGG 60.034 55.000 0.00 0.0 0.00 4.30 R
5337 7350 0.251916 TGCACCAAATACTCCCTCCG 59.748 55.000 0.00 0.0 0.00 4.63 R
6477 8524 0.249868 CGGTGCAAGGAACAGAGACA 60.250 55.000 0.00 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 36 1.810151 GCTATTTTGGTCTTGTCGGCA 59.190 47.619 0.00 0.00 0.00 5.69
48 50 2.671682 GGCAGGGTGGAGGAAGTC 59.328 66.667 0.00 0.00 0.00 3.01
53 55 0.612453 AGGGTGGAGGAAGTCGAGAC 60.612 60.000 0.00 0.00 0.00 3.36
70 72 1.805345 AGACGACGATCTCGAGTTTGT 59.195 47.619 14.91 14.91 46.14 2.83
72 74 2.316792 ACGACGATCTCGAGTTTGTTG 58.683 47.619 22.12 22.12 46.14 3.33
127 129 1.330655 CGACAGTGGCCCTATGAGGT 61.331 60.000 0.00 0.00 31.93 3.85
132 134 2.072487 TGGCCCTATGAGGTGGAGC 61.072 63.158 0.00 0.00 31.93 4.70
133 135 2.823758 GGCCCTATGAGGTGGAGCC 61.824 68.421 0.00 0.00 31.93 4.70
162 164 1.586154 CTCCGTGTTGGTGCCATTCC 61.586 60.000 0.00 0.00 39.52 3.01
199 201 3.140325 CCTGGTTGGTCATACTTGTGT 57.860 47.619 0.00 0.00 0.00 3.72
200 202 3.486383 CCTGGTTGGTCATACTTGTGTT 58.514 45.455 0.00 0.00 0.00 3.32
201 203 3.888930 CCTGGTTGGTCATACTTGTGTTT 59.111 43.478 0.00 0.00 0.00 2.83
239 242 6.598064 GTCCCTTTATCAATTATATGGTCGGG 59.402 42.308 0.00 0.00 0.00 5.14
240 243 5.885912 CCCTTTATCAATTATATGGTCGGGG 59.114 44.000 0.00 0.00 0.00 5.73
243 246 8.104566 CCTTTATCAATTATATGGTCGGGGTTA 58.895 37.037 0.00 0.00 0.00 2.85
245 248 9.675464 TTTATCAATTATATGGTCGGGGTTATC 57.325 33.333 0.00 0.00 0.00 1.75
248 251 0.611714 ATATGGTCGGGGTTATCGCC 59.388 55.000 0.00 0.00 42.32 5.54
285 288 3.396951 CCATGTGGTCGGGGTTATC 57.603 57.895 0.00 0.00 0.00 1.75
286 289 0.531974 CCATGTGGTCGGGGTTATCG 60.532 60.000 0.00 0.00 0.00 2.92
287 290 1.145377 ATGTGGTCGGGGTTATCGC 59.855 57.895 0.00 0.00 0.00 4.58
288 291 2.202974 GTGGTCGGGGTTATCGCC 60.203 66.667 0.00 0.00 42.32 5.54
289 292 2.364579 TGGTCGGGGTTATCGCCT 60.365 61.111 5.45 0.00 43.37 5.52
290 293 2.108362 GGTCGGGGTTATCGCCTG 59.892 66.667 5.45 0.00 43.37 4.85
291 294 2.108362 GTCGGGGTTATCGCCTGG 59.892 66.667 5.45 0.00 43.37 4.45
292 295 2.364579 TCGGGGTTATCGCCTGGT 60.365 61.111 5.45 0.00 43.37 4.00
293 296 1.991167 TCGGGGTTATCGCCTGGTT 60.991 57.895 5.45 0.00 43.37 3.67
294 297 1.817941 CGGGGTTATCGCCTGGTTG 60.818 63.158 5.45 0.00 43.37 3.77
295 298 1.301954 GGGGTTATCGCCTGGTTGT 59.698 57.895 0.00 0.00 42.45 3.32
296 299 0.746923 GGGGTTATCGCCTGGTTGTC 60.747 60.000 0.00 0.00 42.45 3.18
297 300 0.746923 GGGTTATCGCCTGGTTGTCC 60.747 60.000 0.00 0.00 0.00 4.02
298 301 0.746923 GGTTATCGCCTGGTTGTCCC 60.747 60.000 0.00 0.00 0.00 4.46
299 302 0.252197 GTTATCGCCTGGTTGTCCCT 59.748 55.000 0.00 0.00 0.00 4.20
300 303 0.988832 TTATCGCCTGGTTGTCCCTT 59.011 50.000 0.00 0.00 0.00 3.95
301 304 1.868713 TATCGCCTGGTTGTCCCTTA 58.131 50.000 0.00 0.00 0.00 2.69
302 305 0.988832 ATCGCCTGGTTGTCCCTTAA 59.011 50.000 0.00 0.00 0.00 1.85
303 306 0.988832 TCGCCTGGTTGTCCCTTAAT 59.011 50.000 0.00 0.00 0.00 1.40
304 307 1.065709 TCGCCTGGTTGTCCCTTAATC 60.066 52.381 0.00 0.00 0.00 1.75
305 308 1.339631 CGCCTGGTTGTCCCTTAATCA 60.340 52.381 0.00 0.00 0.00 2.57
306 309 2.802719 GCCTGGTTGTCCCTTAATCAA 58.197 47.619 0.00 0.00 0.00 2.57
307 310 2.492088 GCCTGGTTGTCCCTTAATCAAC 59.508 50.000 0.00 0.00 40.13 3.18
313 316 5.059404 GTTGTCCCTTAATCAACCATGTG 57.941 43.478 0.00 0.00 36.47 3.21
314 317 3.696045 TGTCCCTTAATCAACCATGTGG 58.304 45.455 0.00 0.00 42.17 4.17
325 328 3.396951 CCATGTGGTCGGGGTTATC 57.603 57.895 0.00 0.00 0.00 1.75
331 334 2.491152 GTCGGGGTTATCGCACGA 59.509 61.111 0.00 0.00 0.00 4.35
353 356 5.820423 CGATTGTCCCTTAATCAACCATGTA 59.180 40.000 0.00 0.00 34.90 2.29
363 366 2.923908 TCAACCATGTAGTAGGGGGTT 58.076 47.619 0.00 0.00 42.29 4.11
367 370 2.307686 ACCATGTAGTAGGGGGTTTGTG 59.692 50.000 0.00 0.00 33.51 3.33
368 371 2.307686 CCATGTAGTAGGGGGTTTGTGT 59.692 50.000 0.00 0.00 0.00 3.72
369 372 3.343617 CATGTAGTAGGGGGTTTGTGTG 58.656 50.000 0.00 0.00 0.00 3.82
372 375 2.121478 AGTAGGGGGTTTGTGTGGTA 57.879 50.000 0.00 0.00 0.00 3.25
373 376 2.420705 AGTAGGGGGTTTGTGTGGTAA 58.579 47.619 0.00 0.00 0.00 2.85
374 377 2.107031 AGTAGGGGGTTTGTGTGGTAAC 59.893 50.000 0.00 0.00 0.00 2.50
406 409 7.643569 TGGTAACATGCATCACTTCATTTAT 57.356 32.000 0.00 0.00 46.17 1.40
408 411 9.183368 TGGTAACATGCATCACTTCATTTATTA 57.817 29.630 0.00 0.00 46.17 0.98
411 414 8.638685 AACATGCATCACTTCATTTATTAAGC 57.361 30.769 0.00 0.00 0.00 3.09
412 415 8.004087 ACATGCATCACTTCATTTATTAAGCT 57.996 30.769 0.00 0.00 0.00 3.74
429 432 6.485830 TTAAGCTATAGACACATCTTGCCT 57.514 37.500 3.21 0.00 36.29 4.75
430 433 5.365021 AAGCTATAGACACATCTTGCCTT 57.635 39.130 3.21 0.00 36.29 4.35
431 434 4.701765 AGCTATAGACACATCTTGCCTTG 58.298 43.478 3.21 0.00 36.29 3.61
432 435 4.406972 AGCTATAGACACATCTTGCCTTGA 59.593 41.667 3.21 0.00 36.29 3.02
433 436 5.071519 AGCTATAGACACATCTTGCCTTGAT 59.928 40.000 3.21 0.00 36.29 2.57
434 437 6.268617 AGCTATAGACACATCTTGCCTTGATA 59.731 38.462 3.21 0.00 36.29 2.15
436 439 8.253810 GCTATAGACACATCTTGCCTTGATATA 58.746 37.037 3.21 0.00 36.29 0.86
440 443 6.709397 AGACACATCTTGCCTTGATATATGTG 59.291 38.462 10.16 10.16 45.07 3.21
442 445 7.229308 ACACATCTTGCCTTGATATATGTGAT 58.771 34.615 16.81 2.05 43.28 3.06
444 447 7.174426 CACATCTTGCCTTGATATATGTGATGT 59.826 37.037 6.69 0.00 43.28 3.06
446 449 9.223099 CATCTTGCCTTGATATATGTGATGTTA 57.777 33.333 0.00 0.00 0.00 2.41
447 450 8.607441 TCTTGCCTTGATATATGTGATGTTAC 57.393 34.615 0.00 0.00 0.00 2.50
448 451 8.432013 TCTTGCCTTGATATATGTGATGTTACT 58.568 33.333 0.00 0.00 0.00 2.24
449 452 8.607441 TTGCCTTGATATATGTGATGTTACTC 57.393 34.615 0.00 0.00 0.00 2.59
450 453 7.734942 TGCCTTGATATATGTGATGTTACTCA 58.265 34.615 0.00 0.00 0.00 3.41
451 454 8.377799 TGCCTTGATATATGTGATGTTACTCAT 58.622 33.333 0.00 0.00 39.77 2.90
479 482 9.558396 CTAGTAGTAACTAGCTATGTTACCACT 57.442 37.037 27.98 27.98 46.53 4.00
481 484 9.252635 AGTAGTAACTAGCTATGTTACCACTTT 57.747 33.333 24.23 16.61 44.23 2.66
482 485 9.866798 GTAGTAACTAGCTATGTTACCACTTTT 57.133 33.333 25.92 16.80 46.31 2.27
487 490 9.819267 AACTAGCTATGTTACCACTTTTATCTC 57.181 33.333 0.00 0.00 0.00 2.75
488 491 9.203163 ACTAGCTATGTTACCACTTTTATCTCT 57.797 33.333 0.00 0.00 0.00 3.10
508 511 6.567050 TCTCTTTCTTCATTTATTGCATGCC 58.433 36.000 16.68 0.00 0.00 4.40
510 513 6.101332 TCTTTCTTCATTTATTGCATGCCAC 58.899 36.000 16.68 0.00 0.00 5.01
511 514 5.402997 TTCTTCATTTATTGCATGCCACA 57.597 34.783 16.68 0.00 0.00 4.17
513 516 5.593968 TCTTCATTTATTGCATGCCACATC 58.406 37.500 16.68 0.00 0.00 3.06
514 517 5.127356 TCTTCATTTATTGCATGCCACATCA 59.873 36.000 16.68 0.00 0.00 3.07
518 521 6.490721 TCATTTATTGCATGCCACATCATCTA 59.509 34.615 16.68 0.00 0.00 1.98
520 523 6.904463 TTATTGCATGCCACATCATCTATT 57.096 33.333 16.68 0.00 0.00 1.73
521 524 5.801531 ATTGCATGCCACATCATCTATTT 57.198 34.783 16.68 0.00 0.00 1.40
523 526 6.712179 TTGCATGCCACATCATCTATTTAA 57.288 33.333 16.68 0.00 0.00 1.52
525 528 5.009911 TGCATGCCACATCATCTATTTAACC 59.990 40.000 16.68 0.00 0.00 2.85
526 529 5.242393 GCATGCCACATCATCTATTTAACCT 59.758 40.000 6.36 0.00 0.00 3.50
527 530 6.430925 GCATGCCACATCATCTATTTAACCTA 59.569 38.462 6.36 0.00 0.00 3.08
528 531 7.361542 GCATGCCACATCATCTATTTAACCTAG 60.362 40.741 6.36 0.00 0.00 3.02
529 532 7.373617 TGCCACATCATCTATTTAACCTAGA 57.626 36.000 0.00 0.00 0.00 2.43
531 534 9.100197 TGCCACATCATCTATTTAACCTAGATA 57.900 33.333 6.48 0.00 34.84 1.98
559 562 9.680315 GTGTGATGTTACTATCTATGTTACTCC 57.320 37.037 0.00 0.00 0.00 3.85
568 571 8.423906 ACTATCTATGTTACTCCTATTGTGGG 57.576 38.462 0.00 0.00 0.00 4.61
569 572 8.011290 ACTATCTATGTTACTCCTATTGTGGGT 58.989 37.037 0.00 0.00 0.00 4.51
571 574 7.834881 TCTATGTTACTCCTATTGTGGGTAG 57.165 40.000 0.00 0.00 0.00 3.18
573 576 5.927281 TGTTACTCCTATTGTGGGTAGTC 57.073 43.478 0.00 0.00 0.00 2.59
630 2381 2.290093 GTCACTATCGAGTAGGTTCCCG 59.710 54.545 0.00 0.00 33.32 5.14
698 2449 5.163405 ACAGCTGGTTATCACACGAGATTAT 60.163 40.000 19.93 0.00 0.00 1.28
699 2450 6.040504 ACAGCTGGTTATCACACGAGATTATA 59.959 38.462 19.93 0.00 0.00 0.98
700 2451 6.363626 CAGCTGGTTATCACACGAGATTATAC 59.636 42.308 5.57 0.00 0.00 1.47
701 2452 5.342525 GCTGGTTATCACACGAGATTATACG 59.657 44.000 0.00 0.00 0.00 3.06
702 2453 6.381481 TGGTTATCACACGAGATTATACGT 57.619 37.500 0.00 0.00 43.50 3.57
703 2454 7.495135 TGGTTATCACACGAGATTATACGTA 57.505 36.000 0.00 0.00 40.76 3.57
731 2482 1.119684 TCGGAACATCCATCGGACAT 58.880 50.000 0.00 0.00 35.91 3.06
732 2483 1.484653 TCGGAACATCCATCGGACATT 59.515 47.619 0.00 0.00 35.91 2.71
817 2586 3.423154 GGCCGTATATGCGCTGCC 61.423 66.667 15.29 15.29 33.55 4.85
818 2587 2.357517 GCCGTATATGCGCTGCCT 60.358 61.111 9.73 0.00 0.00 4.75
819 2588 2.671177 GCCGTATATGCGCTGCCTG 61.671 63.158 9.73 0.00 0.00 4.85
820 2589 2.671177 CCGTATATGCGCTGCCTGC 61.671 63.158 9.73 0.00 38.57 4.85
822 2591 1.571460 GTATATGCGCTGCCTGCAC 59.429 57.895 9.73 0.00 46.57 4.57
823 2592 1.597854 TATATGCGCTGCCTGCACC 60.598 57.895 9.73 0.00 46.57 5.01
836 2605 4.832608 GCACCCGACCCGCCTTAG 62.833 72.222 0.00 0.00 0.00 2.18
837 2606 4.832608 CACCCGACCCGCCTTAGC 62.833 72.222 0.00 0.00 0.00 3.09
839 2608 3.861797 CCCGACCCGCCTTAGCAT 61.862 66.667 0.00 0.00 39.83 3.79
840 2609 2.280186 CCGACCCGCCTTAGCATC 60.280 66.667 0.00 0.00 39.83 3.91
841 2610 2.280186 CGACCCGCCTTAGCATCC 60.280 66.667 0.00 0.00 39.83 3.51
842 2611 2.280186 GACCCGCCTTAGCATCCG 60.280 66.667 0.00 0.00 39.83 4.18
843 2612 4.547367 ACCCGCCTTAGCATCCGC 62.547 66.667 0.00 0.00 39.83 5.54
847 2616 2.974698 GCCTTAGCATCCGCGCAT 60.975 61.111 8.75 0.00 45.49 4.73
910 2679 2.106332 GACCCGTGTCGCCCATAG 59.894 66.667 0.00 0.00 0.00 2.23
911 2680 4.157120 ACCCGTGTCGCCCATAGC 62.157 66.667 0.00 0.00 38.52 2.97
912 2681 4.155733 CCCGTGTCGCCCATAGCA 62.156 66.667 0.00 0.00 44.04 3.49
913 2682 2.586079 CCGTGTCGCCCATAGCAG 60.586 66.667 0.00 0.00 44.04 4.24
914 2683 3.264897 CGTGTCGCCCATAGCAGC 61.265 66.667 0.00 0.00 44.04 5.25
915 2684 2.897350 GTGTCGCCCATAGCAGCC 60.897 66.667 0.00 0.00 44.04 4.85
916 2685 4.529219 TGTCGCCCATAGCAGCCG 62.529 66.667 0.00 0.00 44.04 5.52
917 2686 4.221422 GTCGCCCATAGCAGCCGA 62.221 66.667 0.00 0.00 44.04 5.54
918 2687 3.916544 TCGCCCATAGCAGCCGAG 61.917 66.667 0.00 0.00 44.04 4.63
920 2689 4.552365 GCCCATAGCAGCCGAGCA 62.552 66.667 0.00 0.00 42.97 4.26
921 2690 2.590007 CCCATAGCAGCCGAGCAC 60.590 66.667 0.00 0.00 36.85 4.40
922 2691 2.590007 CCATAGCAGCCGAGCACC 60.590 66.667 0.00 0.00 36.85 5.01
936 2705 4.735132 CACCCGCATCCGACACGT 62.735 66.667 0.00 0.00 36.29 4.49
953 2722 0.247736 CGTTCCCAGCTCTAGCAGTT 59.752 55.000 4.54 0.00 45.16 3.16
955 2724 1.276421 GTTCCCAGCTCTAGCAGTTCA 59.724 52.381 4.54 0.00 45.16 3.18
956 2725 1.644509 TCCCAGCTCTAGCAGTTCAA 58.355 50.000 4.54 0.00 45.16 2.69
1017 2789 1.746615 CATGGGTCGCACCAAGGAG 60.747 63.158 1.98 0.00 45.13 3.69
1071 2843 3.798511 CTCCCTTCCTTCCCCGGC 61.799 72.222 0.00 0.00 0.00 6.13
1092 2864 4.544689 CTCTCCCTCGCGTCGCTG 62.545 72.222 16.36 9.11 0.00 5.18
1182 2957 3.208884 GAGGTGCCGCCGTCGATAT 62.209 63.158 0.00 0.00 43.70 1.63
1191 2966 2.092211 CCGCCGTCGATATTGATTTAGC 59.908 50.000 0.00 0.00 38.10 3.09
1234 3009 2.665185 GTGGCGCGAGAAGGTGTT 60.665 61.111 12.10 0.00 0.00 3.32
1268 3043 4.911514 ATTTTAGTTTTGCGGTGTCAGT 57.088 36.364 0.00 0.00 0.00 3.41
1287 3062 4.604490 TCAGTGAAGGGGTTAGGGTTTTAT 59.396 41.667 0.00 0.00 0.00 1.40
1288 3063 5.791664 TCAGTGAAGGGGTTAGGGTTTTATA 59.208 40.000 0.00 0.00 0.00 0.98
1317 3092 3.120130 AGCGCAGAATCGACTAGCTATAC 60.120 47.826 11.47 0.00 33.65 1.47
1324 3099 1.810755 TCGACTAGCTATACCGCATGG 59.189 52.381 0.00 0.00 42.84 3.66
1356 3131 3.687321 CTGCATCCCCCGGTGTCTG 62.687 68.421 0.00 0.00 0.00 3.51
1358 3133 3.716195 CATCCCCCGGTGTCTGCA 61.716 66.667 0.00 0.00 0.00 4.41
1365 3149 1.086696 CCCGGTGTCTGCAAACATAG 58.913 55.000 0.00 0.00 0.00 2.23
1375 3159 3.119388 TCTGCAAACATAGAATGCTTGGC 60.119 43.478 5.47 1.70 40.66 4.52
1394 3178 1.001815 GCTTCTAGCCGTGCACAAAAA 60.002 47.619 18.64 0.00 34.48 1.94
1405 3189 4.316792 CCGTGCACAAAAATTACAACGAAC 60.317 41.667 18.64 0.00 0.00 3.95
1415 3199 0.899720 TACAACGAACCTAGGGCCTG 59.100 55.000 18.53 2.03 0.00 4.85
1416 3200 1.078426 CAACGAACCTAGGGCCTGG 60.078 63.158 18.53 14.36 0.00 4.45
1471 3258 3.846383 GCTTAAGATCGATTTCAAGCGCC 60.846 47.826 7.97 0.00 37.78 6.53
1560 3347 1.986378 CGATGGCTTCCGTTCGATATC 59.014 52.381 0.00 0.00 34.96 1.63
1708 3501 2.038659 AGGAAGCCTGATAGACTGAGC 58.961 52.381 0.00 0.00 29.57 4.26
1749 3545 3.374042 TGTGGGTTTCAGGACAAGAAA 57.626 42.857 0.00 0.00 32.93 2.52
2092 3888 2.887151 AACCTGTCAAGAAGGGATGG 57.113 50.000 0.00 0.00 39.30 3.51
2285 4083 7.244166 AGATGTCTCGAAATCACATCATTTC 57.756 36.000 20.20 0.00 46.03 2.17
2610 4504 6.785076 TCCCTAAACAGTAAATGGTTCATCA 58.215 36.000 0.00 0.00 38.46 3.07
3117 5014 3.201726 GCGCTCTGCAAACAATTTAGA 57.798 42.857 0.00 0.00 45.45 2.10
3231 5128 0.322456 TCTCCATTGGGAAGCAACCG 60.322 55.000 2.09 0.00 44.38 4.44
3302 5199 6.556212 TCTTAGAAATAGTTGAGAGCGACTG 58.444 40.000 0.00 0.00 39.15 3.51
3355 5255 5.012871 GGTAGGTAAAGATAATCCCCCTGAC 59.987 48.000 0.00 0.00 0.00 3.51
3415 5315 6.364568 TCAGAAGAATCAGTTGAGAATCCA 57.635 37.500 0.00 0.00 0.00 3.41
3658 5663 8.960591 AGCATTTCTGTAGCATGTACTAAAAAT 58.039 29.630 0.00 2.43 0.00 1.82
3696 5701 5.005394 CGTAATGGTGCTGTGTAGTATTGTC 59.995 44.000 0.00 0.00 0.00 3.18
3803 5808 1.340017 GGCCTGTTGGTCATCTTGCTA 60.340 52.381 0.00 0.00 38.01 3.49
3804 5809 2.648059 GCCTGTTGGTCATCTTGCTAT 58.352 47.619 0.00 0.00 35.27 2.97
3805 5810 2.357009 GCCTGTTGGTCATCTTGCTATG 59.643 50.000 0.00 0.00 35.27 2.23
3806 5811 2.357009 CCTGTTGGTCATCTTGCTATGC 59.643 50.000 0.00 0.00 0.00 3.14
3807 5812 2.357009 CTGTTGGTCATCTTGCTATGCC 59.643 50.000 0.00 0.00 0.00 4.40
3808 5813 2.025981 TGTTGGTCATCTTGCTATGCCT 60.026 45.455 0.00 0.00 0.00 4.75
3809 5814 2.336945 TGGTCATCTTGCTATGCCTG 57.663 50.000 0.00 0.00 0.00 4.85
3810 5815 0.950116 GGTCATCTTGCTATGCCTGC 59.050 55.000 0.00 0.00 0.00 4.85
3811 5816 1.476471 GGTCATCTTGCTATGCCTGCT 60.476 52.381 0.00 0.00 0.00 4.24
3812 5817 1.602851 GTCATCTTGCTATGCCTGCTG 59.397 52.381 0.00 0.00 0.00 4.41
3813 5818 1.211212 TCATCTTGCTATGCCTGCTGT 59.789 47.619 0.00 0.00 0.00 4.40
3814 5819 2.022195 CATCTTGCTATGCCTGCTGTT 58.978 47.619 0.00 0.00 0.00 3.16
3815 5820 1.456296 TCTTGCTATGCCTGCTGTTG 58.544 50.000 0.00 0.00 0.00 3.33
3816 5821 1.003464 TCTTGCTATGCCTGCTGTTGA 59.997 47.619 0.00 0.00 0.00 3.18
3817 5822 2.022195 CTTGCTATGCCTGCTGTTGAT 58.978 47.619 0.00 0.00 0.00 2.57
3818 5823 2.133281 TGCTATGCCTGCTGTTGATT 57.867 45.000 0.00 0.00 0.00 2.57
3819 5824 1.746787 TGCTATGCCTGCTGTTGATTG 59.253 47.619 0.00 0.00 0.00 2.67
3820 5825 1.066605 GCTATGCCTGCTGTTGATTGG 59.933 52.381 0.00 0.00 0.00 3.16
3821 5826 2.372264 CTATGCCTGCTGTTGATTGGT 58.628 47.619 0.00 0.00 0.00 3.67
3822 5827 0.892755 ATGCCTGCTGTTGATTGGTG 59.107 50.000 0.00 0.00 0.00 4.17
3823 5828 0.467844 TGCCTGCTGTTGATTGGTGT 60.468 50.000 0.00 0.00 0.00 4.16
3824 5829 0.038892 GCCTGCTGTTGATTGGTGTG 60.039 55.000 0.00 0.00 0.00 3.82
3825 5830 0.599558 CCTGCTGTTGATTGGTGTGG 59.400 55.000 0.00 0.00 0.00 4.17
3826 5831 1.321474 CTGCTGTTGATTGGTGTGGT 58.679 50.000 0.00 0.00 0.00 4.16
3827 5832 1.682854 CTGCTGTTGATTGGTGTGGTT 59.317 47.619 0.00 0.00 0.00 3.67
3828 5833 1.408340 TGCTGTTGATTGGTGTGGTTG 59.592 47.619 0.00 0.00 0.00 3.77
3829 5834 1.408702 GCTGTTGATTGGTGTGGTTGT 59.591 47.619 0.00 0.00 0.00 3.32
3830 5835 2.159114 GCTGTTGATTGGTGTGGTTGTT 60.159 45.455 0.00 0.00 0.00 2.83
3831 5836 3.067461 GCTGTTGATTGGTGTGGTTGTTA 59.933 43.478 0.00 0.00 0.00 2.41
3832 5837 4.440802 GCTGTTGATTGGTGTGGTTGTTAA 60.441 41.667 0.00 0.00 0.00 2.01
3833 5838 5.738783 GCTGTTGATTGGTGTGGTTGTTAAT 60.739 40.000 0.00 0.00 0.00 1.40
3834 5839 5.595885 TGTTGATTGGTGTGGTTGTTAATG 58.404 37.500 0.00 0.00 0.00 1.90
3835 5840 5.360999 TGTTGATTGGTGTGGTTGTTAATGA 59.639 36.000 0.00 0.00 0.00 2.57
3836 5841 5.703978 TGATTGGTGTGGTTGTTAATGAG 57.296 39.130 0.00 0.00 0.00 2.90
3837 5842 5.136828 TGATTGGTGTGGTTGTTAATGAGT 58.863 37.500 0.00 0.00 0.00 3.41
3838 5843 4.909696 TTGGTGTGGTTGTTAATGAGTG 57.090 40.909 0.00 0.00 0.00 3.51
3839 5844 2.621055 TGGTGTGGTTGTTAATGAGTGC 59.379 45.455 0.00 0.00 0.00 4.40
3840 5845 2.350388 GGTGTGGTTGTTAATGAGTGCG 60.350 50.000 0.00 0.00 0.00 5.34
3841 5846 2.546368 GTGTGGTTGTTAATGAGTGCGA 59.454 45.455 0.00 0.00 0.00 5.10
3842 5847 2.805671 TGTGGTTGTTAATGAGTGCGAG 59.194 45.455 0.00 0.00 0.00 5.03
3843 5848 1.804151 TGGTTGTTAATGAGTGCGAGC 59.196 47.619 0.00 0.00 0.00 5.03
3844 5849 1.804151 GGTTGTTAATGAGTGCGAGCA 59.196 47.619 0.00 0.00 0.00 4.26
3845 5850 2.225491 GGTTGTTAATGAGTGCGAGCAA 59.775 45.455 0.00 0.00 0.00 3.91
3846 5851 3.304391 GGTTGTTAATGAGTGCGAGCAAA 60.304 43.478 0.00 0.00 0.00 3.68
3847 5852 3.811722 TGTTAATGAGTGCGAGCAAAG 57.188 42.857 0.00 0.00 0.00 2.77
3848 5853 2.095768 TGTTAATGAGTGCGAGCAAAGC 60.096 45.455 0.00 0.00 0.00 3.51
3849 5854 1.807139 TAATGAGTGCGAGCAAAGCA 58.193 45.000 0.00 0.00 42.99 3.91
3850 5855 1.171308 AATGAGTGCGAGCAAAGCAT 58.829 45.000 0.00 1.29 46.96 3.79
3851 5856 1.171308 ATGAGTGCGAGCAAAGCATT 58.829 45.000 0.00 0.30 46.96 3.56
3852 5857 0.239082 TGAGTGCGAGCAAAGCATTG 59.761 50.000 0.00 0.00 46.96 2.82
3994 5999 4.207891 TCTGAAGTTCTGAACTATGCCC 57.792 45.455 22.30 10.50 41.91 5.36
4217 6222 9.988350 CAGTAGCACGTCAATTATAATTTTCTT 57.012 29.630 8.01 0.00 0.00 2.52
4263 6268 7.721842 TGTACAGGGAGTAAACATCATTTTTCA 59.278 33.333 0.00 0.00 33.72 2.69
4346 6352 6.928492 AGCTTTTCAAGTTTCAACTTTCAACA 59.072 30.769 2.01 0.00 46.52 3.33
4437 6443 6.704050 GCAGAAAGTTCAGAGAGTAAAGTTCT 59.296 38.462 0.00 0.00 0.00 3.01
4451 6457 9.833917 AGAGTAAAGTTCTTACTAATAATGGCC 57.166 33.333 0.00 0.00 35.54 5.36
4578 6584 3.941483 CTGCCCCTTGTGTTGATAAGTAG 59.059 47.826 0.00 0.00 0.00 2.57
4579 6585 3.329520 TGCCCCTTGTGTTGATAAGTAGT 59.670 43.478 0.00 0.00 0.00 2.73
4580 6586 4.532916 TGCCCCTTGTGTTGATAAGTAGTA 59.467 41.667 0.00 0.00 0.00 1.82
4712 6718 7.596749 ACGGTTAGTTTCTCTTGTGATATTG 57.403 36.000 0.00 0.00 0.00 1.90
4715 6721 7.119262 CGGTTAGTTTCTCTTGTGATATTGGTT 59.881 37.037 0.00 0.00 0.00 3.67
4716 6722 9.444600 GGTTAGTTTCTCTTGTGATATTGGTTA 57.555 33.333 0.00 0.00 0.00 2.85
4851 6859 2.434428 CTTGAAAGCCTCACTCATGCT 58.566 47.619 0.00 0.00 36.79 3.79
5181 7194 9.069082 AGACGTATTTTAGTGCTAGATACATCT 57.931 33.333 0.00 0.00 40.86 2.90
5239 7252 9.807921 AGTATATAACAAATAAACATGGGGAGG 57.192 33.333 0.00 0.00 0.00 4.30
5252 7265 1.633432 TGGGGAGGTCGTTTTGATGAT 59.367 47.619 0.00 0.00 0.00 2.45
5253 7266 2.841266 TGGGGAGGTCGTTTTGATGATA 59.159 45.455 0.00 0.00 0.00 2.15
5254 7267 3.203716 GGGGAGGTCGTTTTGATGATAC 58.796 50.000 0.00 0.00 0.00 2.24
5255 7268 3.118371 GGGGAGGTCGTTTTGATGATACT 60.118 47.826 0.00 0.00 0.00 2.12
5256 7269 4.120589 GGGAGGTCGTTTTGATGATACTC 58.879 47.826 0.00 0.00 0.00 2.59
5257 7270 4.120589 GGAGGTCGTTTTGATGATACTCC 58.879 47.826 0.00 0.00 35.46 3.85
5258 7271 4.120589 GAGGTCGTTTTGATGATACTCCC 58.879 47.826 0.00 0.00 0.00 4.30
5259 7272 3.775316 AGGTCGTTTTGATGATACTCCCT 59.225 43.478 0.00 0.00 0.00 4.20
5260 7273 4.120589 GGTCGTTTTGATGATACTCCCTC 58.879 47.826 0.00 0.00 0.00 4.30
5261 7274 4.120589 GTCGTTTTGATGATACTCCCTCC 58.879 47.826 0.00 0.00 0.00 4.30
5262 7275 3.123804 CGTTTTGATGATACTCCCTCCG 58.876 50.000 0.00 0.00 0.00 4.63
5263 7276 2.872858 GTTTTGATGATACTCCCTCCGC 59.127 50.000 0.00 0.00 0.00 5.54
5264 7277 1.048601 TTGATGATACTCCCTCCGCC 58.951 55.000 0.00 0.00 0.00 6.13
5265 7278 0.832135 TGATGATACTCCCTCCGCCC 60.832 60.000 0.00 0.00 0.00 6.13
5266 7279 1.536662 ATGATACTCCCTCCGCCCC 60.537 63.158 0.00 0.00 0.00 5.80
5267 7280 2.122989 GATACTCCCTCCGCCCCA 60.123 66.667 0.00 0.00 0.00 4.96
5268 7281 1.764854 GATACTCCCTCCGCCCCAA 60.765 63.158 0.00 0.00 0.00 4.12
5269 7282 1.307517 ATACTCCCTCCGCCCCAAA 60.308 57.895 0.00 0.00 0.00 3.28
5270 7283 0.917333 ATACTCCCTCCGCCCCAAAA 60.917 55.000 0.00 0.00 0.00 2.44
5271 7284 0.917333 TACTCCCTCCGCCCCAAAAT 60.917 55.000 0.00 0.00 0.00 1.82
5272 7285 0.917333 ACTCCCTCCGCCCCAAAATA 60.917 55.000 0.00 0.00 0.00 1.40
5273 7286 0.257616 CTCCCTCCGCCCCAAAATAA 59.742 55.000 0.00 0.00 0.00 1.40
5274 7287 0.257616 TCCCTCCGCCCCAAAATAAG 59.742 55.000 0.00 0.00 0.00 1.73
5275 7288 0.033503 CCCTCCGCCCCAAAATAAGT 60.034 55.000 0.00 0.00 0.00 2.24
5276 7289 1.102978 CCTCCGCCCCAAAATAAGTG 58.897 55.000 0.00 0.00 0.00 3.16
5277 7290 1.340600 CCTCCGCCCCAAAATAAGTGA 60.341 52.381 0.00 0.00 0.00 3.41
5278 7291 1.743394 CTCCGCCCCAAAATAAGTGAC 59.257 52.381 0.00 0.00 0.00 3.67
5279 7292 1.353022 TCCGCCCCAAAATAAGTGACT 59.647 47.619 0.00 0.00 0.00 3.41
5280 7293 1.743394 CCGCCCCAAAATAAGTGACTC 59.257 52.381 0.00 0.00 0.00 3.36
5281 7294 2.432444 CGCCCCAAAATAAGTGACTCA 58.568 47.619 0.00 0.00 0.00 3.41
5282 7295 2.817258 CGCCCCAAAATAAGTGACTCAA 59.183 45.455 0.00 0.00 0.00 3.02
5283 7296 3.365969 CGCCCCAAAATAAGTGACTCAAC 60.366 47.826 0.00 0.00 0.00 3.18
5284 7297 3.826729 GCCCCAAAATAAGTGACTCAACT 59.173 43.478 0.00 0.00 0.00 3.16
5285 7298 4.280929 GCCCCAAAATAAGTGACTCAACTT 59.719 41.667 0.00 0.00 42.89 2.66
5286 7299 5.221441 GCCCCAAAATAAGTGACTCAACTTT 60.221 40.000 0.00 0.00 40.77 2.66
5287 7300 6.215845 CCCCAAAATAAGTGACTCAACTTTG 58.784 40.000 0.00 0.00 40.77 2.77
5288 7301 6.183360 CCCCAAAATAAGTGACTCAACTTTGT 60.183 38.462 0.00 0.00 40.77 2.83
5289 7302 7.013846 CCCCAAAATAAGTGACTCAACTTTGTA 59.986 37.037 0.00 0.00 40.77 2.41
5290 7303 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
5291 7304 8.402472 CCAAAATAAGTGACTCAACTTTGTACA 58.598 33.333 0.00 0.00 40.77 2.90
5292 7305 9.781834 CAAAATAAGTGACTCAACTTTGTACAA 57.218 29.630 3.59 3.59 40.77 2.41
5293 7306 9.783256 AAAATAAGTGACTCAACTTTGTACAAC 57.217 29.630 8.07 0.00 40.77 3.32
5294 7307 8.732746 AATAAGTGACTCAACTTTGTACAACT 57.267 30.769 8.07 0.00 40.77 3.16
5295 7308 8.732746 ATAAGTGACTCAACTTTGTACAACTT 57.267 30.769 8.07 7.56 40.77 2.66
5296 7309 7.448748 AAGTGACTCAACTTTGTACAACTTT 57.551 32.000 8.07 1.26 37.05 2.66
5297 7310 6.842163 AGTGACTCAACTTTGTACAACTTTG 58.158 36.000 8.07 13.87 0.00 2.77
5298 7311 6.430000 AGTGACTCAACTTTGTACAACTTTGT 59.570 34.615 20.26 11.04 44.86 2.83
5299 7312 7.604927 AGTGACTCAACTTTGTACAACTTTGTA 59.395 33.333 20.26 0.00 42.35 2.41
5326 7339 9.530633 CTAAACTTAGTACAAAGTTGAGTCACT 57.469 33.333 2.97 0.00 46.40 3.41
5327 7340 8.788325 AAACTTAGTACAAAGTTGAGTCACTT 57.212 30.769 2.97 0.00 46.40 3.16
5328 7341 9.880157 AAACTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 2.97 0.00 46.40 2.24
5334 7347 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
5335 7348 7.639113 ACAAAGTTGAGTCACTTATTTTGGA 57.361 32.000 12.94 0.00 35.87 3.53
5336 7349 8.062065 ACAAAGTTGAGTCACTTATTTTGGAA 57.938 30.769 12.94 0.00 35.87 3.53
5337 7350 7.973944 ACAAAGTTGAGTCACTTATTTTGGAAC 59.026 33.333 12.94 0.00 35.87 3.62
5338 7351 6.300354 AGTTGAGTCACTTATTTTGGAACG 57.700 37.500 0.00 0.00 0.00 3.95
5339 7352 5.238650 AGTTGAGTCACTTATTTTGGAACGG 59.761 40.000 0.00 0.00 0.00 4.44
5340 7353 4.963373 TGAGTCACTTATTTTGGAACGGA 58.037 39.130 0.00 0.00 0.00 4.69
5341 7354 4.994852 TGAGTCACTTATTTTGGAACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
5342 7355 4.324267 AGTCACTTATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
5343 7356 3.439129 GTCACTTATTTTGGAACGGAGGG 59.561 47.826 0.00 0.00 0.00 4.30
5344 7357 3.328343 TCACTTATTTTGGAACGGAGGGA 59.672 43.478 0.00 0.00 0.00 4.20
5345 7358 3.689649 CACTTATTTTGGAACGGAGGGAG 59.310 47.826 0.00 0.00 0.00 4.30
5774 7801 1.795872 TCGTTTACATTGTGAGTGGCG 59.204 47.619 0.00 0.00 0.00 5.69
5776 7803 1.265635 GTTTACATTGTGAGTGGCGCA 59.734 47.619 10.83 0.00 34.64 6.09
5794 7821 2.734079 CGCAATTACATTTTGGCCGTTT 59.266 40.909 0.00 0.00 0.00 3.60
6432 8479 2.815211 CGGCACCATCCACGACAG 60.815 66.667 0.00 0.00 0.00 3.51
6473 8520 4.150454 CCGGCTCCCTCTCCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
6474 8521 2.520741 CGGCTCCCTCTCCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
6475 8522 2.123033 GGCTCCCTCTCCCTCTCC 60.123 72.222 0.00 0.00 0.00 3.71
6476 8523 2.123033 GCTCCCTCTCCCTCTCCC 60.123 72.222 0.00 0.00 0.00 4.30
6477 8524 2.710826 GCTCCCTCTCCCTCTCCCT 61.711 68.421 0.00 0.00 0.00 4.20
6487 8534 1.190643 CCCTCTCCCTGTCTCTGTTC 58.809 60.000 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.448469 ACAAGACCAAAATAGCAAGACAATAGT 59.552 33.333 0.00 0.00 0.00 2.12
34 36 0.612453 GTCTCGACTTCCTCCACCCT 60.612 60.000 0.00 0.00 0.00 4.34
70 72 2.204865 CTACCCCCGCATCCAACCAA 62.205 60.000 0.00 0.00 0.00 3.67
72 74 2.192175 CTACCCCCGCATCCAACC 59.808 66.667 0.00 0.00 0.00 3.77
108 110 1.330655 ACCTCATAGGGCCACTGTCG 61.331 60.000 6.18 0.00 40.58 4.35
110 112 1.274703 CCACCTCATAGGGCCACTGT 61.275 60.000 6.18 0.00 40.58 3.55
132 134 3.726517 CACGGAGCAAAGCCACGG 61.727 66.667 7.61 0.00 33.66 4.94
133 135 2.542907 AACACGGAGCAAAGCCACG 61.543 57.895 0.00 0.00 35.07 4.94
162 164 4.025401 GTCACCCACAAAGCGCCG 62.025 66.667 2.29 0.00 0.00 6.46
201 203 7.002250 TGATAAAGGGACAATCATGCAAAAA 57.998 32.000 0.00 0.00 0.00 1.94
214 217 6.598064 CCCGACCATATAATTGATAAAGGGAC 59.402 42.308 0.00 0.00 34.79 4.46
239 242 2.279054 GACGACCGGGCGATAACC 60.279 66.667 41.17 15.74 34.83 2.85
240 243 2.279054 GGACGACCGGGCGATAAC 60.279 66.667 41.17 23.10 34.83 1.89
245 248 2.966182 GATTAAGGGACGACCGGGCG 62.966 65.000 32.33 32.33 46.96 6.13
248 251 1.648504 GTTGATTAAGGGACGACCGG 58.351 55.000 0.00 0.00 46.96 5.28
251 254 3.374058 CACATGGTTGATTAAGGGACGAC 59.626 47.826 0.00 0.00 0.00 4.34
285 288 1.339631 TGATTAAGGGACAACCAGGCG 60.340 52.381 0.00 0.00 43.89 5.52
286 289 2.492088 GTTGATTAAGGGACAACCAGGC 59.508 50.000 0.00 0.00 43.89 4.85
291 294 4.082245 CCACATGGTTGATTAAGGGACAAC 60.082 45.833 0.00 0.00 41.79 3.32
292 295 4.085733 CCACATGGTTGATTAAGGGACAA 58.914 43.478 0.00 0.00 0.00 3.18
293 296 3.696045 CCACATGGTTGATTAAGGGACA 58.304 45.455 0.00 0.00 0.00 4.02
307 310 0.531974 CGATAACCCCGACCACATGG 60.532 60.000 0.00 0.00 42.17 3.66
308 311 1.157870 GCGATAACCCCGACCACATG 61.158 60.000 0.00 0.00 0.00 3.21
309 312 1.145377 GCGATAACCCCGACCACAT 59.855 57.895 0.00 0.00 0.00 3.21
310 313 2.284276 TGCGATAACCCCGACCACA 61.284 57.895 0.00 0.00 0.00 4.17
311 314 1.812507 GTGCGATAACCCCGACCAC 60.813 63.158 0.00 0.00 0.00 4.16
312 315 2.580276 GTGCGATAACCCCGACCA 59.420 61.111 0.00 0.00 0.00 4.02
313 316 2.359570 ATCGTGCGATAACCCCGACC 62.360 60.000 5.19 0.00 32.36 4.79
314 317 0.529119 AATCGTGCGATAACCCCGAC 60.529 55.000 7.54 0.00 33.97 4.79
315 318 0.528901 CAATCGTGCGATAACCCCGA 60.529 55.000 7.54 0.00 33.97 5.14
316 319 0.808453 ACAATCGTGCGATAACCCCG 60.808 55.000 7.54 0.00 33.97 5.73
317 320 0.935196 GACAATCGTGCGATAACCCC 59.065 55.000 7.54 0.00 33.97 4.95
318 321 0.935196 GGACAATCGTGCGATAACCC 59.065 55.000 7.54 5.61 33.97 4.11
319 322 0.935196 GGGACAATCGTGCGATAACC 59.065 55.000 7.54 10.63 33.50 2.85
320 323 1.935933 AGGGACAATCGTGCGATAAC 58.064 50.000 7.54 3.00 33.50 1.89
321 324 2.684001 AAGGGACAATCGTGCGATAA 57.316 45.000 7.54 0.00 33.50 1.75
322 325 3.804786 TTAAGGGACAATCGTGCGATA 57.195 42.857 7.54 0.00 33.50 2.92
323 326 2.684001 TTAAGGGACAATCGTGCGAT 57.316 45.000 0.77 0.77 33.50 4.58
324 327 2.093921 TGATTAAGGGACAATCGTGCGA 60.094 45.455 0.00 0.00 35.55 5.10
325 328 2.276201 TGATTAAGGGACAATCGTGCG 58.724 47.619 0.00 0.00 35.55 5.34
331 334 6.731467 ACTACATGGTTGATTAAGGGACAAT 58.269 36.000 0.00 0.00 0.00 2.71
353 356 2.107031 GTTACCACACAAACCCCCTACT 59.893 50.000 0.00 0.00 0.00 2.57
363 366 4.720046 ACCACACATATGTTACCACACAA 58.280 39.130 5.37 0.00 36.72 3.33
367 370 6.676943 GCATGTTACCACACATATGTTACCAC 60.677 42.308 5.37 0.00 36.72 4.16
368 371 5.355630 GCATGTTACCACACATATGTTACCA 59.644 40.000 5.37 0.00 36.72 3.25
369 372 5.355630 TGCATGTTACCACACATATGTTACC 59.644 40.000 5.37 0.00 36.72 2.85
372 375 5.651576 TGATGCATGTTACCACACATATGTT 59.348 36.000 2.46 0.00 36.72 2.71
373 376 5.066375 GTGATGCATGTTACCACACATATGT 59.934 40.000 2.46 1.41 40.80 2.29
374 377 5.297527 AGTGATGCATGTTACCACACATATG 59.702 40.000 2.46 0.00 35.51 1.78
375 378 5.439721 AGTGATGCATGTTACCACACATAT 58.560 37.500 2.46 0.00 35.51 1.78
376 379 4.842574 AGTGATGCATGTTACCACACATA 58.157 39.130 2.46 0.00 35.51 2.29
377 380 3.689347 AGTGATGCATGTTACCACACAT 58.311 40.909 2.46 0.00 37.93 3.21
378 381 3.138884 AGTGATGCATGTTACCACACA 57.861 42.857 2.46 0.00 35.03 3.72
379 382 3.501828 TGAAGTGATGCATGTTACCACAC 59.498 43.478 2.46 3.90 35.03 3.82
380 383 3.749226 TGAAGTGATGCATGTTACCACA 58.251 40.909 2.46 1.50 37.31 4.17
381 384 4.970662 ATGAAGTGATGCATGTTACCAC 57.029 40.909 2.46 5.55 0.00 4.16
382 385 5.981088 AAATGAAGTGATGCATGTTACCA 57.019 34.783 2.46 0.00 0.00 3.25
385 388 9.734620 GCTTAATAAATGAAGTGATGCATGTTA 57.265 29.630 2.46 0.00 0.00 2.41
386 389 8.472413 AGCTTAATAAATGAAGTGATGCATGTT 58.528 29.630 2.46 0.00 0.00 2.71
387 390 8.004087 AGCTTAATAAATGAAGTGATGCATGT 57.996 30.769 2.46 0.00 0.00 3.21
403 406 8.651389 AGGCAAGATGTGTCTATAGCTTAATAA 58.349 33.333 0.00 0.00 41.69 1.40
405 408 7.072263 AGGCAAGATGTGTCTATAGCTTAAT 57.928 36.000 0.00 0.00 41.69 1.40
406 409 6.485830 AGGCAAGATGTGTCTATAGCTTAA 57.514 37.500 0.00 0.00 41.69 1.85
408 411 5.104776 TCAAGGCAAGATGTGTCTATAGCTT 60.105 40.000 0.00 0.00 43.11 3.74
409 412 4.406972 TCAAGGCAAGATGTGTCTATAGCT 59.593 41.667 0.00 0.00 43.11 3.32
410 413 4.697514 TCAAGGCAAGATGTGTCTATAGC 58.302 43.478 0.00 0.00 43.11 2.97
416 419 6.707608 TCACATATATCAAGGCAAGATGTGTC 59.292 38.462 10.81 0.00 42.02 3.67
418 421 7.174426 ACATCACATATATCAAGGCAAGATGTG 59.826 37.037 0.00 5.88 40.32 3.21
419 422 7.229308 ACATCACATATATCAAGGCAAGATGT 58.771 34.615 0.00 0.00 37.95 3.06
420 423 7.683437 ACATCACATATATCAAGGCAAGATG 57.317 36.000 0.00 0.00 36.24 2.90
421 424 9.224267 GTAACATCACATATATCAAGGCAAGAT 57.776 33.333 0.00 0.00 0.00 2.40
422 425 8.432013 AGTAACATCACATATATCAAGGCAAGA 58.568 33.333 0.00 0.00 0.00 3.02
423 426 8.613060 AGTAACATCACATATATCAAGGCAAG 57.387 34.615 0.00 0.00 0.00 4.01
424 427 8.210265 TGAGTAACATCACATATATCAAGGCAA 58.790 33.333 0.00 0.00 0.00 4.52
425 428 7.734942 TGAGTAACATCACATATATCAAGGCA 58.265 34.615 0.00 0.00 0.00 4.75
426 429 8.783833 ATGAGTAACATCACATATATCAAGGC 57.216 34.615 0.00 0.00 33.46 4.35
481 484 9.740239 GCATGCAATAAATGAAGAAAGAGATAA 57.260 29.630 14.21 0.00 0.00 1.75
482 485 8.355169 GGCATGCAATAAATGAAGAAAGAGATA 58.645 33.333 21.36 0.00 0.00 1.98
483 486 7.147794 TGGCATGCAATAAATGAAGAAAGAGAT 60.148 33.333 21.36 0.00 0.00 2.75
486 489 6.101332 GTGGCATGCAATAAATGAAGAAAGA 58.899 36.000 21.36 0.00 0.00 2.52
487 490 5.870433 TGTGGCATGCAATAAATGAAGAAAG 59.130 36.000 21.36 0.00 0.00 2.62
488 491 5.791666 TGTGGCATGCAATAAATGAAGAAA 58.208 33.333 21.36 0.00 0.00 2.52
489 492 5.402997 TGTGGCATGCAATAAATGAAGAA 57.597 34.783 21.36 0.00 0.00 2.52
490 493 5.127356 TGATGTGGCATGCAATAAATGAAGA 59.873 36.000 21.36 0.00 0.00 2.87
493 496 5.303333 AGATGATGTGGCATGCAATAAATGA 59.697 36.000 21.36 0.22 0.00 2.57
498 501 6.904463 AAATAGATGATGTGGCATGCAATA 57.096 33.333 21.36 7.09 0.00 1.90
499 502 5.801531 AAATAGATGATGTGGCATGCAAT 57.198 34.783 21.36 9.79 0.00 3.56
501 504 5.009911 GGTTAAATAGATGATGTGGCATGCA 59.990 40.000 21.36 2.54 0.00 3.96
502 505 5.242393 AGGTTAAATAGATGATGTGGCATGC 59.758 40.000 9.90 9.90 0.00 4.06
503 506 6.889301 AGGTTAAATAGATGATGTGGCATG 57.111 37.500 0.00 0.00 0.00 4.06
504 507 7.977818 TCTAGGTTAAATAGATGATGTGGCAT 58.022 34.615 0.00 0.00 0.00 4.40
523 526 9.815306 AGATAGTAACATCACACATATCTAGGT 57.185 33.333 0.00 0.00 29.17 3.08
533 536 9.680315 GGAGTAACATAGATAGTAACATCACAC 57.320 37.037 0.00 0.00 0.00 3.82
542 545 9.529823 CCCACAATAGGAGTAACATAGATAGTA 57.470 37.037 0.00 0.00 0.00 1.82
543 546 8.011290 ACCCACAATAGGAGTAACATAGATAGT 58.989 37.037 0.00 0.00 0.00 2.12
544 547 8.423906 ACCCACAATAGGAGTAACATAGATAG 57.576 38.462 0.00 0.00 0.00 2.08
545 548 9.529823 CTACCCACAATAGGAGTAACATAGATA 57.470 37.037 0.00 0.00 0.00 1.98
546 549 8.011290 ACTACCCACAATAGGAGTAACATAGAT 58.989 37.037 0.00 0.00 0.00 1.98
547 550 7.359849 ACTACCCACAATAGGAGTAACATAGA 58.640 38.462 0.00 0.00 0.00 1.98
548 551 7.506261 AGACTACCCACAATAGGAGTAACATAG 59.494 40.741 0.00 0.00 0.00 2.23
550 553 6.203072 AGACTACCCACAATAGGAGTAACAT 58.797 40.000 0.00 0.00 0.00 2.71
553 556 7.341256 CAGTTAGACTACCCACAATAGGAGTAA 59.659 40.741 0.00 0.00 0.00 2.24
556 559 5.892119 TCAGTTAGACTACCCACAATAGGAG 59.108 44.000 0.00 0.00 0.00 3.69
557 560 5.834460 TCAGTTAGACTACCCACAATAGGA 58.166 41.667 0.00 0.00 0.00 2.94
558 561 6.540438 TTCAGTTAGACTACCCACAATAGG 57.460 41.667 0.00 0.00 0.00 2.57
559 562 7.147724 TGGATTCAGTTAGACTACCCACAATAG 60.148 40.741 0.00 0.00 0.00 1.73
561 564 5.487488 TGGATTCAGTTAGACTACCCACAAT 59.513 40.000 0.00 0.00 0.00 2.71
562 565 4.841813 TGGATTCAGTTAGACTACCCACAA 59.158 41.667 0.00 0.00 0.00 3.33
563 566 4.422057 TGGATTCAGTTAGACTACCCACA 58.578 43.478 0.00 0.00 0.00 4.17
564 567 5.104900 ACATGGATTCAGTTAGACTACCCAC 60.105 44.000 0.00 0.00 0.00 4.61
565 568 5.030147 ACATGGATTCAGTTAGACTACCCA 58.970 41.667 0.00 0.00 0.00 4.51
567 570 6.222038 TCACATGGATTCAGTTAGACTACC 57.778 41.667 0.00 0.00 0.00 3.18
568 571 5.751028 GCTCACATGGATTCAGTTAGACTAC 59.249 44.000 0.00 0.00 0.00 2.73
569 572 5.658634 AGCTCACATGGATTCAGTTAGACTA 59.341 40.000 0.00 0.00 0.00 2.59
571 574 4.569966 CAGCTCACATGGATTCAGTTAGAC 59.430 45.833 0.00 0.00 0.00 2.59
573 576 4.763073 TCAGCTCACATGGATTCAGTTAG 58.237 43.478 0.00 0.00 0.00 2.34
630 2381 1.673920 TCCGTTCTGTTGCTTTTGACC 59.326 47.619 0.00 0.00 0.00 4.02
698 2449 9.932207 ATGGATGTTCCGATTAATAATTACGTA 57.068 29.630 0.00 0.00 40.17 3.57
699 2450 8.842358 ATGGATGTTCCGATTAATAATTACGT 57.158 30.769 0.00 0.00 40.17 3.57
700 2451 8.108172 CGATGGATGTTCCGATTAATAATTACG 58.892 37.037 0.00 0.00 40.17 3.18
701 2452 8.388103 CCGATGGATGTTCCGATTAATAATTAC 58.612 37.037 0.00 0.00 40.17 1.89
702 2453 8.315482 TCCGATGGATGTTCCGATTAATAATTA 58.685 33.333 0.00 0.00 40.17 1.40
703 2454 7.119262 GTCCGATGGATGTTCCGATTAATAATT 59.881 37.037 0.00 0.00 40.17 1.40
717 2468 3.495629 CCTCATCAATGTCCGATGGATGT 60.496 47.826 0.00 0.00 40.58 3.06
731 2482 6.723298 TTTTTACCTTGCTTTCCTCATCAA 57.277 33.333 0.00 0.00 0.00 2.57
782 2551 3.384532 GGGACCCGAACCGCAGTA 61.385 66.667 0.00 0.00 0.00 2.74
801 2570 2.357517 AGGCAGCGCATATACGGC 60.358 61.111 11.47 2.61 0.00 5.68
819 2588 4.832608 CTAAGGCGGGTCGGGTGC 62.833 72.222 0.00 0.00 0.00 5.01
820 2589 4.832608 GCTAAGGCGGGTCGGGTG 62.833 72.222 0.00 0.00 0.00 4.61
822 2591 3.809374 GATGCTAAGGCGGGTCGGG 62.809 68.421 0.00 0.00 42.25 5.14
823 2592 2.280186 GATGCTAAGGCGGGTCGG 60.280 66.667 0.00 0.00 42.25 4.79
824 2593 2.280186 GGATGCTAAGGCGGGTCG 60.280 66.667 0.00 0.00 42.25 4.79
825 2594 2.280186 CGGATGCTAAGGCGGGTC 60.280 66.667 0.00 0.00 42.25 4.46
826 2595 4.547367 GCGGATGCTAAGGCGGGT 62.547 66.667 0.00 0.00 42.25 5.28
830 2599 2.959357 GATGCGCGGATGCTAAGGC 61.959 63.158 20.78 0.00 39.65 4.35
831 2600 2.320587 GGATGCGCGGATGCTAAGG 61.321 63.158 24.11 0.00 39.65 2.69
832 2601 2.661566 CGGATGCGCGGATGCTAAG 61.662 63.158 27.53 10.53 39.65 2.18
833 2602 2.661537 CGGATGCGCGGATGCTAA 60.662 61.111 27.53 0.00 39.65 3.09
893 2662 2.106332 CTATGGGCGACACGGGTC 59.894 66.667 8.05 8.05 40.77 4.46
894 2663 4.157120 GCTATGGGCGACACGGGT 62.157 66.667 0.00 0.00 0.00 5.28
895 2664 4.155733 TGCTATGGGCGACACGGG 62.156 66.667 0.00 0.00 45.43 5.28
896 2665 2.586079 CTGCTATGGGCGACACGG 60.586 66.667 0.00 0.00 45.43 4.94
897 2666 3.264897 GCTGCTATGGGCGACACG 61.265 66.667 0.00 0.00 45.43 4.49
898 2667 2.897350 GGCTGCTATGGGCGACAC 60.897 66.667 0.00 0.00 45.43 3.67
903 2672 4.552365 TGCTCGGCTGCTATGGGC 62.552 66.667 0.00 2.17 42.22 5.36
904 2673 2.590007 GTGCTCGGCTGCTATGGG 60.590 66.667 0.00 0.00 0.00 4.00
905 2674 2.590007 GGTGCTCGGCTGCTATGG 60.590 66.667 0.00 0.00 0.00 2.74
906 2675 2.590007 GGGTGCTCGGCTGCTATG 60.590 66.667 0.00 0.00 0.00 2.23
907 2676 4.227134 CGGGTGCTCGGCTGCTAT 62.227 66.667 0.00 0.00 0.00 2.97
916 2685 4.451150 TGTCGGATGCGGGTGCTC 62.451 66.667 6.82 0.00 43.34 4.26
917 2686 4.760047 GTGTCGGATGCGGGTGCT 62.760 66.667 6.82 0.00 43.34 4.40
919 2688 4.735132 ACGTGTCGGATGCGGGTG 62.735 66.667 6.82 0.00 0.00 4.61
920 2689 3.927163 GAACGTGTCGGATGCGGGT 62.927 63.158 6.82 0.00 0.00 5.28
921 2690 3.186047 GAACGTGTCGGATGCGGG 61.186 66.667 6.82 0.00 0.00 6.13
922 2691 3.186047 GGAACGTGTCGGATGCGG 61.186 66.667 6.82 0.00 0.00 5.69
936 2705 1.644509 TGAACTGCTAGAGCTGGGAA 58.355 50.000 12.34 0.00 43.15 3.97
953 2722 1.672356 GCGAGCAGGGAAAGCTTGA 60.672 57.895 0.00 0.00 44.56 3.02
955 2724 2.360475 GGCGAGCAGGGAAAGCTT 60.360 61.111 0.00 0.00 43.58 3.74
956 2725 3.322318 GAGGCGAGCAGGGAAAGCT 62.322 63.158 0.00 0.00 46.82 3.74
995 2767 4.720902 TGGTGCGACCCATGGCTG 62.721 66.667 6.09 0.00 37.50 4.85
1071 2843 4.200283 GACGCGAGGGAGAGGCAG 62.200 72.222 15.93 0.00 0.00 4.85
1182 2957 2.201732 CTAGCTTCCGCGCTAAATCAA 58.798 47.619 5.56 0.00 41.57 2.57
1191 2966 4.148825 ACCCAGCTAGCTTCCGCG 62.149 66.667 16.46 2.89 42.32 6.46
1234 3009 7.516470 CGCAAAACTAAAATTCAGCAATCAACA 60.516 33.333 0.00 0.00 0.00 3.33
1268 3043 7.127405 GGATTTATAAAACCCTAACCCCTTCA 58.873 38.462 12.37 0.00 0.00 3.02
1287 3062 2.607635 GTCGATTCTGCGCTTGGATTTA 59.392 45.455 9.73 0.00 0.00 1.40
1288 3063 1.398390 GTCGATTCTGCGCTTGGATTT 59.602 47.619 9.73 0.00 0.00 2.17
1324 3099 4.152625 GCAGCATGTCGTCGTGGC 62.153 66.667 4.08 0.00 39.31 5.01
1334 3109 4.511246 ACCGGGGGATGCAGCATG 62.511 66.667 14.22 0.00 40.87 4.06
1356 3131 3.515330 AGCCAAGCATTCTATGTTTGC 57.485 42.857 9.79 6.63 46.16 3.68
1358 3133 5.067023 GCTAGAAGCCAAGCATTCTATGTTT 59.933 40.000 0.00 0.00 37.38 2.83
1375 3159 3.559238 ATTTTTGTGCACGGCTAGAAG 57.441 42.857 13.13 0.00 0.00 2.85
1394 3178 2.093128 CAGGCCCTAGGTTCGTTGTAAT 60.093 50.000 8.29 0.00 0.00 1.89
1415 3199 0.038310 AAGACACCAAGCTTAGCCCC 59.962 55.000 0.00 0.00 0.00 5.80
1416 3200 1.168714 CAAGACACCAAGCTTAGCCC 58.831 55.000 0.00 0.00 0.00 5.19
1560 3347 7.755591 AGTTCAGTTAGCAATCACATTACATG 58.244 34.615 0.00 0.00 0.00 3.21
1749 3545 4.320202 GCAGAAACAATGTACAACCGATGT 60.320 41.667 0.00 0.00 46.36 3.06
2143 3939 1.332065 CGGCACACACATGTTGTAACA 59.668 47.619 11.61 0.00 44.06 2.41
2374 4266 5.236047 GCAAAGACCACATTAACATGCAAAA 59.764 36.000 0.00 0.00 33.05 2.44
2375 4267 4.749099 GCAAAGACCACATTAACATGCAAA 59.251 37.500 0.00 0.00 33.05 3.68
2376 4268 4.039004 AGCAAAGACCACATTAACATGCAA 59.961 37.500 0.00 0.00 33.05 4.08
2377 4269 3.573538 AGCAAAGACCACATTAACATGCA 59.426 39.130 0.00 0.00 33.05 3.96
2378 4270 4.168760 GAGCAAAGACCACATTAACATGC 58.831 43.478 0.00 0.00 33.05 4.06
2379 4271 4.460382 AGGAGCAAAGACCACATTAACATG 59.540 41.667 0.00 0.00 36.34 3.21
2610 4504 2.421739 GGCGCGGACCATCATAGT 59.578 61.111 8.83 0.00 0.00 2.12
3114 5011 6.174720 AGATTTTGGTGTCAAGTGTCTCTA 57.825 37.500 0.00 0.00 33.98 2.43
3117 5014 6.530019 AAAAGATTTTGGTGTCAAGTGTCT 57.470 33.333 0.00 0.00 33.98 3.41
3160 5057 4.293494 AGGGCTGAGATGAAGTAATCAGA 58.707 43.478 5.28 0.00 42.53 3.27
3231 5128 5.609533 TTACCTCCAAGTCTACATAAGCC 57.390 43.478 0.00 0.00 0.00 4.35
3289 5186 2.408050 ACAATGTCAGTCGCTCTCAAC 58.592 47.619 0.00 0.00 0.00 3.18
3302 5199 2.365293 AGGCCTGAACCAAAACAATGTC 59.635 45.455 3.11 0.00 0.00 3.06
3355 5255 2.170187 AGAAGGCACAAGATCTGCTAGG 59.830 50.000 0.00 0.00 34.84 3.02
3415 5315 4.534103 ACTTGAGGAGCATCTTTAGGAGTT 59.466 41.667 0.00 0.00 33.73 3.01
3658 5663 5.106475 GCACCATTACGTTTCTCCATGTTAA 60.106 40.000 0.00 0.00 0.00 2.01
3696 5701 7.275560 TGAGTACAATGACGAAGATGTTACATG 59.724 37.037 1.24 0.00 0.00 3.21
3803 5808 0.892755 CACCAATCAACAGCAGGCAT 59.107 50.000 0.00 0.00 0.00 4.40
3804 5809 0.467844 ACACCAATCAACAGCAGGCA 60.468 50.000 0.00 0.00 0.00 4.75
3805 5810 0.038892 CACACCAATCAACAGCAGGC 60.039 55.000 0.00 0.00 0.00 4.85
3806 5811 0.599558 CCACACCAATCAACAGCAGG 59.400 55.000 0.00 0.00 0.00 4.85
3807 5812 1.321474 ACCACACCAATCAACAGCAG 58.679 50.000 0.00 0.00 0.00 4.24
3808 5813 1.408340 CAACCACACCAATCAACAGCA 59.592 47.619 0.00 0.00 0.00 4.41
3809 5814 1.408702 ACAACCACACCAATCAACAGC 59.591 47.619 0.00 0.00 0.00 4.40
3810 5815 3.799281 AACAACCACACCAATCAACAG 57.201 42.857 0.00 0.00 0.00 3.16
3811 5816 5.360999 TCATTAACAACCACACCAATCAACA 59.639 36.000 0.00 0.00 0.00 3.33
3812 5817 5.837437 TCATTAACAACCACACCAATCAAC 58.163 37.500 0.00 0.00 0.00 3.18
3813 5818 5.596361 ACTCATTAACAACCACACCAATCAA 59.404 36.000 0.00 0.00 0.00 2.57
3814 5819 5.009510 CACTCATTAACAACCACACCAATCA 59.990 40.000 0.00 0.00 0.00 2.57
3815 5820 5.460646 CACTCATTAACAACCACACCAATC 58.539 41.667 0.00 0.00 0.00 2.67
3816 5821 4.261994 GCACTCATTAACAACCACACCAAT 60.262 41.667 0.00 0.00 0.00 3.16
3817 5822 3.067461 GCACTCATTAACAACCACACCAA 59.933 43.478 0.00 0.00 0.00 3.67
3818 5823 2.621055 GCACTCATTAACAACCACACCA 59.379 45.455 0.00 0.00 0.00 4.17
3819 5824 2.350388 CGCACTCATTAACAACCACACC 60.350 50.000 0.00 0.00 0.00 4.16
3820 5825 2.546368 TCGCACTCATTAACAACCACAC 59.454 45.455 0.00 0.00 0.00 3.82
3821 5826 2.805671 CTCGCACTCATTAACAACCACA 59.194 45.455 0.00 0.00 0.00 4.17
3822 5827 2.412847 GCTCGCACTCATTAACAACCAC 60.413 50.000 0.00 0.00 0.00 4.16
3823 5828 1.804151 GCTCGCACTCATTAACAACCA 59.196 47.619 0.00 0.00 0.00 3.67
3824 5829 1.804151 TGCTCGCACTCATTAACAACC 59.196 47.619 0.00 0.00 0.00 3.77
3825 5830 3.536158 TTGCTCGCACTCATTAACAAC 57.464 42.857 0.00 0.00 0.00 3.32
3826 5831 3.609175 GCTTTGCTCGCACTCATTAACAA 60.609 43.478 0.00 0.00 0.00 2.83
3827 5832 2.095768 GCTTTGCTCGCACTCATTAACA 60.096 45.455 0.00 0.00 0.00 2.41
3828 5833 2.095768 TGCTTTGCTCGCACTCATTAAC 60.096 45.455 0.00 0.00 31.40 2.01
3829 5834 2.150390 TGCTTTGCTCGCACTCATTAA 58.850 42.857 0.00 0.00 31.40 1.40
3830 5835 1.807139 TGCTTTGCTCGCACTCATTA 58.193 45.000 0.00 0.00 31.40 1.90
3831 5836 1.171308 ATGCTTTGCTCGCACTCATT 58.829 45.000 0.00 0.00 40.65 2.57
3832 5837 1.135489 CAATGCTTTGCTCGCACTCAT 60.135 47.619 0.00 0.00 40.65 2.90
3833 5838 0.239082 CAATGCTTTGCTCGCACTCA 59.761 50.000 0.00 0.00 40.65 3.41
3834 5839 3.011513 CAATGCTTTGCTCGCACTC 57.988 52.632 0.00 0.00 40.65 3.51
4129 6134 2.860735 GTGTATTCTCTTGCTGGTAGCG 59.139 50.000 0.00 0.00 46.26 4.26
4217 6222 8.040002 TGTACAGTATTCAATATTCCCATCCA 57.960 34.615 0.00 0.00 0.00 3.41
4346 6352 7.557358 TGAAGAACATGCCATGTCATATTTACT 59.443 33.333 11.38 0.00 44.07 2.24
4437 6443 7.836685 TCTCAACATTTGGGCCATTATTAGTAA 59.163 33.333 7.26 0.00 0.00 2.24
4451 6457 7.092079 TCACTTGCAAATATCTCAACATTTGG 58.908 34.615 0.00 0.00 40.76 3.28
4578 6584 4.637534 TCTTTGATGCCTGCAAGAGAATAC 59.362 41.667 0.00 0.00 34.07 1.89
4579 6585 4.847198 TCTTTGATGCCTGCAAGAGAATA 58.153 39.130 0.00 0.00 34.07 1.75
4580 6586 3.693807 TCTTTGATGCCTGCAAGAGAAT 58.306 40.909 0.00 0.00 34.07 2.40
5202 7215 3.771216 TGTTATATACTCCCTCCGTCCC 58.229 50.000 0.00 0.00 0.00 4.46
5216 7229 7.447238 CGACCTCCCCATGTTTATTTGTTATAT 59.553 37.037 0.00 0.00 0.00 0.86
5239 7252 4.120589 GGAGGGAGTATCATCAAAACGAC 58.879 47.826 0.00 0.00 36.25 4.34
5252 7265 0.917333 ATTTTGGGGCGGAGGGAGTA 60.917 55.000 0.00 0.00 0.00 2.59
5253 7266 0.917333 TATTTTGGGGCGGAGGGAGT 60.917 55.000 0.00 0.00 0.00 3.85
5254 7267 0.257616 TTATTTTGGGGCGGAGGGAG 59.742 55.000 0.00 0.00 0.00 4.30
5255 7268 0.257616 CTTATTTTGGGGCGGAGGGA 59.742 55.000 0.00 0.00 0.00 4.20
5256 7269 0.033503 ACTTATTTTGGGGCGGAGGG 60.034 55.000 0.00 0.00 0.00 4.30
5257 7270 1.102978 CACTTATTTTGGGGCGGAGG 58.897 55.000 0.00 0.00 0.00 4.30
5258 7271 1.743394 GTCACTTATTTTGGGGCGGAG 59.257 52.381 0.00 0.00 0.00 4.63
5259 7272 1.353022 AGTCACTTATTTTGGGGCGGA 59.647 47.619 0.00 0.00 0.00 5.54
5260 7273 1.743394 GAGTCACTTATTTTGGGGCGG 59.257 52.381 0.00 0.00 0.00 6.13
5261 7274 2.432444 TGAGTCACTTATTTTGGGGCG 58.568 47.619 0.00 0.00 0.00 6.13
5262 7275 3.826729 AGTTGAGTCACTTATTTTGGGGC 59.173 43.478 0.00 0.00 0.00 5.80
5263 7276 6.183360 ACAAAGTTGAGTCACTTATTTTGGGG 60.183 38.462 12.94 0.00 35.87 4.96
5264 7277 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
5265 7278 8.402472 TGTACAAAGTTGAGTCACTTATTTTGG 58.598 33.333 12.94 0.78 35.87 3.28
5266 7279 9.781834 TTGTACAAAGTTGAGTCACTTATTTTG 57.218 29.630 5.64 8.80 35.87 2.44
5267 7280 9.783256 GTTGTACAAAGTTGAGTCACTTATTTT 57.217 29.630 10.51 0.00 35.87 1.82
5268 7281 9.174166 AGTTGTACAAAGTTGAGTCACTTATTT 57.826 29.630 10.51 0.00 35.87 1.40
5269 7282 8.732746 AGTTGTACAAAGTTGAGTCACTTATT 57.267 30.769 10.51 0.00 35.87 1.40
5270 7283 8.732746 AAGTTGTACAAAGTTGAGTCACTTAT 57.267 30.769 10.51 0.00 35.87 1.73
5271 7284 8.447833 CAAAGTTGTACAAAGTTGAGTCACTTA 58.552 33.333 20.34 0.00 35.87 2.24
5272 7285 7.040686 ACAAAGTTGTACAAAGTTGAGTCACTT 60.041 33.333 27.10 14.75 40.16 3.16
5273 7286 6.430000 ACAAAGTTGTACAAAGTTGAGTCACT 59.570 34.615 27.10 10.46 40.16 3.41
5274 7287 6.608610 ACAAAGTTGTACAAAGTTGAGTCAC 58.391 36.000 27.10 8.64 40.16 3.67
5275 7288 6.811253 ACAAAGTTGTACAAAGTTGAGTCA 57.189 33.333 27.10 0.00 40.16 3.41
5299 7312 9.310716 GTGACTCAACTTTGTACTAAGTTTAGT 57.689 33.333 31.64 31.64 46.91 2.24
5300 7313 9.530633 AGTGACTCAACTTTGTACTAAGTTTAG 57.469 33.333 27.69 27.69 43.85 1.85
5301 7314 9.880157 AAGTGACTCAACTTTGTACTAAGTTTA 57.120 29.630 26.14 19.67 43.85 2.01
5302 7315 8.788325 AAGTGACTCAACTTTGTACTAAGTTT 57.212 30.769 26.14 15.97 43.85 2.66
5308 7321 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
5309 7322 8.617809 TCCAAAATAAGTGACTCAACTTTGTAC 58.382 33.333 0.00 0.00 40.77 2.90
5310 7323 8.740123 TCCAAAATAAGTGACTCAACTTTGTA 57.260 30.769 0.00 0.00 40.77 2.41
5311 7324 7.639113 TCCAAAATAAGTGACTCAACTTTGT 57.361 32.000 0.00 0.00 40.77 2.83
5312 7325 7.165812 CGTTCCAAAATAAGTGACTCAACTTTG 59.834 37.037 0.00 0.00 40.77 2.77
5313 7326 7.193595 CGTTCCAAAATAAGTGACTCAACTTT 58.806 34.615 0.00 0.00 40.77 2.66
5314 7327 6.238648 CCGTTCCAAAATAAGTGACTCAACTT 60.239 38.462 0.00 0.00 42.89 2.66
5315 7328 5.238650 CCGTTCCAAAATAAGTGACTCAACT 59.761 40.000 0.00 0.00 0.00 3.16
5316 7329 5.237779 TCCGTTCCAAAATAAGTGACTCAAC 59.762 40.000 0.00 0.00 0.00 3.18
5317 7330 5.369833 TCCGTTCCAAAATAAGTGACTCAA 58.630 37.500 0.00 0.00 0.00 3.02
5318 7331 4.963373 TCCGTTCCAAAATAAGTGACTCA 58.037 39.130 0.00 0.00 0.00 3.41
5319 7332 4.392138 CCTCCGTTCCAAAATAAGTGACTC 59.608 45.833 0.00 0.00 0.00 3.36
5320 7333 4.324267 CCTCCGTTCCAAAATAAGTGACT 58.676 43.478 0.00 0.00 0.00 3.41
5321 7334 3.439129 CCCTCCGTTCCAAAATAAGTGAC 59.561 47.826 0.00 0.00 0.00 3.67
5322 7335 3.328343 TCCCTCCGTTCCAAAATAAGTGA 59.672 43.478 0.00 0.00 0.00 3.41
5323 7336 3.681593 TCCCTCCGTTCCAAAATAAGTG 58.318 45.455 0.00 0.00 0.00 3.16
5324 7337 3.329814 ACTCCCTCCGTTCCAAAATAAGT 59.670 43.478 0.00 0.00 0.00 2.24
5325 7338 3.951663 ACTCCCTCCGTTCCAAAATAAG 58.048 45.455 0.00 0.00 0.00 1.73
5326 7339 5.703730 ATACTCCCTCCGTTCCAAAATAA 57.296 39.130 0.00 0.00 0.00 1.40
5327 7340 5.703730 AATACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
5328 7341 4.586306 AATACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
5329 7342 4.076394 CAAATACTCCCTCCGTTCCAAAA 58.924 43.478 0.00 0.00 0.00 2.44
5330 7343 3.560453 CCAAATACTCCCTCCGTTCCAAA 60.560 47.826 0.00 0.00 0.00 3.28
5331 7344 2.026636 CCAAATACTCCCTCCGTTCCAA 60.027 50.000 0.00 0.00 0.00 3.53
5332 7345 1.557832 CCAAATACTCCCTCCGTTCCA 59.442 52.381 0.00 0.00 0.00 3.53
5333 7346 1.558294 ACCAAATACTCCCTCCGTTCC 59.442 52.381 0.00 0.00 0.00 3.62
5334 7347 2.629051 CACCAAATACTCCCTCCGTTC 58.371 52.381 0.00 0.00 0.00 3.95
5335 7348 1.339727 GCACCAAATACTCCCTCCGTT 60.340 52.381 0.00 0.00 0.00 4.44
5336 7349 0.252197 GCACCAAATACTCCCTCCGT 59.748 55.000 0.00 0.00 0.00 4.69
5337 7350 0.251916 TGCACCAAATACTCCCTCCG 59.748 55.000 0.00 0.00 0.00 4.63
5338 7351 2.736670 ATGCACCAAATACTCCCTCC 57.263 50.000 0.00 0.00 0.00 4.30
5339 7352 5.133221 ACATTATGCACCAAATACTCCCTC 58.867 41.667 0.00 0.00 0.00 4.30
5340 7353 5.129368 ACATTATGCACCAAATACTCCCT 57.871 39.130 0.00 0.00 0.00 4.20
5341 7354 8.677300 CATATACATTATGCACCAAATACTCCC 58.323 37.037 0.00 0.00 0.00 4.30
5342 7355 9.231297 ACATATACATTATGCACCAAATACTCC 57.769 33.333 0.00 0.00 0.00 3.85
5345 7358 9.128107 GCAACATATACATTATGCACCAAATAC 57.872 33.333 0.00 0.00 34.10 1.89
5774 7801 4.740741 AAAACGGCCAAAATGTAATTGC 57.259 36.364 2.24 0.00 36.10 3.56
5882 7917 2.284754 TGGCAGGTAAAGCATGACAA 57.715 45.000 0.00 0.00 44.77 3.18
6155 8197 9.906660 AAAGAGTTTATTTGCATTCGTGATTAA 57.093 25.926 0.00 0.00 0.00 1.40
6158 8200 9.722056 GATAAAGAGTTTATTTGCATTCGTGAT 57.278 29.630 0.00 0.00 36.04 3.06
6162 8204 9.559958 AACAGATAAAGAGTTTATTTGCATTCG 57.440 29.630 8.93 0.00 39.83 3.34
6472 8519 1.338579 GCAAGGAACAGAGACAGGGAG 60.339 57.143 0.00 0.00 0.00 4.30
6473 8520 0.687354 GCAAGGAACAGAGACAGGGA 59.313 55.000 0.00 0.00 0.00 4.20
6474 8521 0.397941 TGCAAGGAACAGAGACAGGG 59.602 55.000 0.00 0.00 0.00 4.45
6475 8522 1.517242 GTGCAAGGAACAGAGACAGG 58.483 55.000 0.00 0.00 0.00 4.00
6476 8523 1.517242 GGTGCAAGGAACAGAGACAG 58.483 55.000 0.00 0.00 0.00 3.51
6477 8524 0.249868 CGGTGCAAGGAACAGAGACA 60.250 55.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.