Multiple sequence alignment - TraesCS6D01G308800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G308800 chr6D 100.000 2517 0 0 1 2517 419613268 419615784 0.000000e+00 4649.0
1 TraesCS6D01G308800 chr6D 100.000 1031 0 0 2783 3813 419616050 419617080 0.000000e+00 1905.0
2 TraesCS6D01G308800 chr6D 89.043 867 80 11 1323 2189 419285944 419286795 0.000000e+00 1061.0
3 TraesCS6D01G308800 chr6D 82.125 1214 163 33 1319 2517 419748291 419749465 0.000000e+00 990.0
4 TraesCS6D01G308800 chr6D 82.172 1206 154 44 1323 2517 419657292 419658447 0.000000e+00 979.0
5 TraesCS6D01G308800 chr6D 84.159 1029 125 28 1511 2517 419485070 419486082 0.000000e+00 963.0
6 TraesCS6D01G308800 chr6D 82.750 400 36 24 816 1199 419284171 419284553 3.670000e-85 326.0
7 TraesCS6D01G308800 chr6D 91.827 208 17 0 1001 1208 419482497 419482704 1.340000e-74 291.0
8 TraesCS6D01G308800 chr6D 92.381 105 7 1 3615 3718 419616778 419616882 8.530000e-32 148.0
9 TraesCS6D01G308800 chr6D 92.381 105 7 1 3511 3615 419616882 419616985 8.530000e-32 148.0
10 TraesCS6D01G308800 chr6B 95.161 1178 46 7 1321 2497 632503467 632504634 0.000000e+00 1849.0
11 TraesCS6D01G308800 chr6B 90.449 869 69 7 1321 2189 632242744 632243598 0.000000e+00 1133.0
12 TraesCS6D01G308800 chr6B 82.208 1214 162 34 1321 2517 632787104 632788280 0.000000e+00 996.0
13 TraesCS6D01G308800 chr6B 84.436 1028 121 27 1511 2517 632565419 632566428 0.000000e+00 976.0
14 TraesCS6D01G308800 chr6B 81.758 1206 140 50 1322 2499 632422195 632423348 0.000000e+00 935.0
15 TraesCS6D01G308800 chr6B 83.414 1031 129 29 1511 2517 632304760 632305772 0.000000e+00 918.0
16 TraesCS6D01G308800 chr6B 88.013 609 41 18 2866 3447 632522635 632523238 0.000000e+00 691.0
17 TraesCS6D01G308800 chr6B 85.071 422 40 16 1 414 632496358 632496764 3.550000e-110 409.0
18 TraesCS6D01G308800 chr6B 90.545 275 8 6 1047 1321 632502793 632503049 7.840000e-92 348.0
19 TraesCS6D01G308800 chr6B 81.156 398 49 14 816 1199 632241076 632241461 2.880000e-76 296.0
20 TraesCS6D01G308800 chr6B 92.308 208 16 0 1001 1208 632419937 632420144 2.880000e-76 296.0
21 TraesCS6D01G308800 chr6B 89.083 229 21 3 993 1221 632786188 632786412 8.060000e-72 281.0
22 TraesCS6D01G308800 chr6B 90.952 210 10 3 3580 3782 632526629 632526836 1.350000e-69 274.0
23 TraesCS6D01G308800 chr6B 92.529 174 7 5 831 1004 632502631 632502798 1.060000e-60 244.0
24 TraesCS6D01G308800 chr6B 95.294 85 4 0 2784 2868 632504860 632504944 6.640000e-28 135.0
25 TraesCS6D01G308800 chr6B 89.189 111 6 1 3511 3615 632526663 632526773 2.390000e-27 134.0
26 TraesCS6D01G308800 chr6B 94.872 78 4 0 1323 1400 632565259 632565336 5.170000e-24 122.0
27 TraesCS6D01G308800 chr6B 87.952 83 7 2 3511 3590 632524671 632524753 1.130000e-15 95.3
28 TraesCS6D01G308800 chr6A 94.527 1206 38 11 1321 2517 562813446 562814632 0.000000e+00 1836.0
29 TraesCS6D01G308800 chr6A 89.106 872 78 11 1321 2189 562704458 562705315 0.000000e+00 1068.0
30 TraesCS6D01G308800 chr6A 81.811 1215 156 43 1323 2517 562869208 562870377 0.000000e+00 959.0
31 TraesCS6D01G308800 chr6A 84.133 1021 126 20 1511 2517 562920348 562921346 0.000000e+00 955.0
32 TraesCS6D01G308800 chr6A 84.044 1009 111 28 1511 2475 562796867 562797869 0.000000e+00 926.0
33 TraesCS6D01G308800 chr6A 92.048 415 22 9 411 816 574236884 574237296 1.190000e-159 573.0
34 TraesCS6D01G308800 chr6A 91.354 347 19 8 958 1304 562812520 562812855 7.460000e-127 464.0
35 TraesCS6D01G308800 chr6A 83.951 405 41 12 2 405 562812033 562812414 2.160000e-97 366.0
36 TraesCS6D01G308800 chr6A 85.106 329 21 8 2783 3085 562814786 562815112 1.030000e-80 311.0
37 TraesCS6D01G308800 chr6A 82.000 400 37 26 816 1199 562703148 562703528 1.330000e-79 307.0
38 TraesCS6D01G308800 chr6A 92.788 208 15 0 1001 1208 562794899 562795106 6.190000e-78 302.0
39 TraesCS6D01G308800 chr6A 90.541 222 18 2 1000 1221 562918869 562919087 1.340000e-74 291.0
40 TraesCS6D01G308800 chr6A 89.119 193 18 2 3615 3807 562817330 562817519 1.770000e-58 237.0
41 TraesCS6D01G308800 chr6A 86.620 142 13 4 2783 2919 562870508 562870648 6.600000e-33 152.0
42 TraesCS6D01G308800 chr6A 91.250 80 7 0 1319 1398 562920179 562920258 4.030000e-20 110.0
43 TraesCS6D01G308800 chr6A 89.552 67 3 1 866 932 562812456 562812518 8.780000e-12 82.4
44 TraesCS6D01G308800 chr6A 92.453 53 4 0 3088 3140 562815950 562816002 4.080000e-10 76.8
45 TraesCS6D01G308800 chr3D 92.736 413 19 6 414 816 3102369 3101958 1.530000e-163 586.0
46 TraesCS6D01G308800 chr2D 92.875 407 22 6 415 817 586773352 586773755 5.490000e-163 584.0
47 TraesCS6D01G308800 chr2D 92.629 407 23 5 415 816 392527548 392527952 2.550000e-161 579.0
48 TraesCS6D01G308800 chr2A 92.718 412 18 8 415 816 61475967 61475558 5.490000e-163 584.0
49 TraesCS6D01G308800 chr7A 92.665 409 19 8 415 816 225637797 225637393 2.550000e-161 579.0
50 TraesCS6D01G308800 chr7A 100.000 29 0 0 139 167 152545547 152545575 2.000000e-03 54.7
51 TraesCS6D01G308800 chr4D 92.647 408 21 8 415 816 495973751 495973347 2.550000e-161 579.0
52 TraesCS6D01G308800 chr3A 92.457 411 21 9 414 816 82104032 82104440 2.550000e-161 579.0
53 TraesCS6D01G308800 chr5A 92.439 410 21 8 415 816 12224621 12225028 9.180000e-161 577.0
54 TraesCS6D01G308800 chr1A 74.096 166 30 7 11 165 337982424 337982261 5.320000e-04 56.5
55 TraesCS6D01G308800 chr7D 100.000 29 0 0 139 167 152130046 152130074 2.000000e-03 54.7
56 TraesCS6D01G308800 chr7D 100.000 29 0 0 20 48 550803290 550803318 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G308800 chr6D 419613268 419617080 3812 False 1712.500000 4649 96.190500 1 3813 4 chr6D.!!$F5 3812
1 TraesCS6D01G308800 chr6D 419748291 419749465 1174 False 990.000000 990 82.125000 1319 2517 1 chr6D.!!$F2 1198
2 TraesCS6D01G308800 chr6D 419657292 419658447 1155 False 979.000000 979 82.172000 1323 2517 1 chr6D.!!$F1 1194
3 TraesCS6D01G308800 chr6D 419284171 419286795 2624 False 693.500000 1061 85.896500 816 2189 2 chr6D.!!$F3 1373
4 TraesCS6D01G308800 chr6D 419482497 419486082 3585 False 627.000000 963 87.993000 1001 2517 2 chr6D.!!$F4 1516
5 TraesCS6D01G308800 chr6B 632304760 632305772 1012 False 918.000000 918 83.414000 1511 2517 1 chr6B.!!$F1 1006
6 TraesCS6D01G308800 chr6B 632241076 632243598 2522 False 714.500000 1133 85.802500 816 2189 2 chr6B.!!$F3 1373
7 TraesCS6D01G308800 chr6B 632502631 632504944 2313 False 644.000000 1849 93.382250 831 2868 4 chr6B.!!$F5 2037
8 TraesCS6D01G308800 chr6B 632786188 632788280 2092 False 638.500000 996 85.645500 993 2517 2 chr6B.!!$F8 1524
9 TraesCS6D01G308800 chr6B 632419937 632423348 3411 False 615.500000 935 87.033000 1001 2499 2 chr6B.!!$F4 1498
10 TraesCS6D01G308800 chr6B 632565259 632566428 1169 False 549.000000 976 89.654000 1323 2517 2 chr6B.!!$F7 1194
11 TraesCS6D01G308800 chr6B 632522635 632526836 4201 False 298.575000 691 89.026500 2866 3782 4 chr6B.!!$F6 916
12 TraesCS6D01G308800 chr6A 562703148 562705315 2167 False 687.500000 1068 85.553000 816 2189 2 chr6A.!!$F2 1373
13 TraesCS6D01G308800 chr6A 562794899 562797869 2970 False 614.000000 926 88.416000 1001 2475 2 chr6A.!!$F3 1474
14 TraesCS6D01G308800 chr6A 562869208 562870648 1440 False 555.500000 959 84.215500 1323 2919 2 chr6A.!!$F5 1596
15 TraesCS6D01G308800 chr6A 562812033 562817519 5486 False 481.885714 1836 89.437429 2 3807 7 chr6A.!!$F4 3805
16 TraesCS6D01G308800 chr6A 562918869 562921346 2477 False 452.000000 955 88.641333 1000 2517 3 chr6A.!!$F6 1517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
145 146 0.037303 TTACTGAGTCCCGGTCGACT 59.963 55.0 16.46 12.58 45.86 4.18 F
1229 2278 0.034896 AGTTCAATCCAACGCCGACT 59.965 50.0 0.00 0.00 0.00 4.18 F
1500 5281 0.028770 CATGTGGTTTGTTGCGTCGT 59.971 50.0 0.00 0.00 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1500 5281 0.539438 CACAGGCCTGCCAGGTAAAA 60.539 55.000 33.06 0.0 37.80 1.52 R
2169 5965 1.003759 CGTACCTTCCGAGAGTGATCG 60.004 57.143 0.00 0.0 42.36 3.69 R
3349 9097 1.068083 CCCTCCACATCGACATCCG 59.932 63.158 0.00 0.0 40.25 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 4.024893 GCAAAATTTGAGTCGACTGAGACA 60.025 41.667 25.58 11.97 43.24 3.41
54 55 2.298610 TGAAGTCTCGGTCGATGCTAT 58.701 47.619 0.00 0.00 0.00 2.97
59 60 4.072839 AGTCTCGGTCGATGCTATATTCA 58.927 43.478 0.00 0.00 0.00 2.57
62 63 4.459337 TCTCGGTCGATGCTATATTCATGT 59.541 41.667 0.00 0.00 0.00 3.21
63 64 5.048013 TCTCGGTCGATGCTATATTCATGTT 60.048 40.000 0.00 0.00 0.00 2.71
71 72 9.503427 TCGATGCTATATTCATGTTATCTTACG 57.497 33.333 0.00 0.00 0.00 3.18
74 75 8.757164 TGCTATATTCATGTTATCTTACGTGG 57.243 34.615 0.00 0.00 36.05 4.94
81 82 6.645306 TCATGTTATCTTACGTGGAAATCCA 58.355 36.000 0.00 0.00 45.30 3.41
145 146 0.037303 TTACTGAGTCCCGGTCGACT 59.963 55.000 16.46 12.58 45.86 4.18
151 152 0.748729 AGTCCCGGTCGACTGAGATC 60.749 60.000 26.01 12.24 41.60 2.75
155 156 0.589223 CCGGTCGACTGAGATCTAGC 59.411 60.000 26.01 0.00 0.00 3.42
160 161 2.017782 TCGACTGAGATCTAGCCACAC 58.982 52.381 0.00 0.00 0.00 3.82
163 164 1.007721 ACTGAGATCTAGCCACACCCT 59.992 52.381 0.00 0.00 0.00 4.34
180 181 7.528205 GCCACACCCTTTAGTATATAGGCATAA 60.528 40.741 0.00 0.00 38.32 1.90
233 234 8.945481 TCTCTACAACTCTACTGTATCTGTAC 57.055 38.462 0.00 0.00 0.00 2.90
236 237 6.419980 ACAACTCTACTGTATCTGTACGTC 57.580 41.667 0.00 0.00 33.36 4.34
237 238 5.936372 ACAACTCTACTGTATCTGTACGTCA 59.064 40.000 0.00 0.00 33.36 4.35
249 250 2.736721 CTGTACGTCATGTCCAGTTTGG 59.263 50.000 0.00 0.00 39.43 3.28
251 252 0.889186 ACGTCATGTCCAGTTTGGCC 60.889 55.000 0.00 0.00 37.47 5.36
255 256 1.077265 ATGTCCAGTTTGGCCCAGG 59.923 57.895 0.00 0.00 37.47 4.45
272 273 0.755686 AGGATCCATCTCGAGTTGGC 59.244 55.000 29.99 19.87 35.42 4.52
288 289 3.588336 GCTTGAGCCTGAGCCAAG 58.412 61.111 10.17 10.17 43.98 3.61
377 378 3.755628 GCGTCCAGCGTGACCCTA 61.756 66.667 3.51 0.00 43.66 3.53
413 414 3.730761 GCGGCAGCAGTGTTGGAG 61.731 66.667 9.18 0.00 44.35 3.86
414 415 3.052082 CGGCAGCAGTGTTGGAGG 61.052 66.667 9.18 0.00 0.00 4.30
415 416 2.674380 GGCAGCAGTGTTGGAGGG 60.674 66.667 9.18 0.00 0.00 4.30
416 417 2.674380 GCAGCAGTGTTGGAGGGG 60.674 66.667 9.18 0.00 0.00 4.79
417 418 3.160585 CAGCAGTGTTGGAGGGGA 58.839 61.111 0.00 0.00 0.00 4.81
418 419 1.455849 CAGCAGTGTTGGAGGGGAA 59.544 57.895 0.00 0.00 0.00 3.97
419 420 0.178992 CAGCAGTGTTGGAGGGGAAA 60.179 55.000 0.00 0.00 0.00 3.13
420 421 0.779997 AGCAGTGTTGGAGGGGAAAT 59.220 50.000 0.00 0.00 0.00 2.17
421 422 1.992557 AGCAGTGTTGGAGGGGAAATA 59.007 47.619 0.00 0.00 0.00 1.40
422 423 2.092323 GCAGTGTTGGAGGGGAAATAC 58.908 52.381 0.00 0.00 0.00 1.89
423 424 2.554344 GCAGTGTTGGAGGGGAAATACA 60.554 50.000 0.00 0.00 0.00 2.29
424 425 3.081804 CAGTGTTGGAGGGGAAATACAC 58.918 50.000 0.00 0.00 36.91 2.90
425 426 2.986728 AGTGTTGGAGGGGAAATACACT 59.013 45.455 0.00 0.00 40.80 3.55
426 427 3.397955 AGTGTTGGAGGGGAAATACACTT 59.602 43.478 0.00 0.00 42.38 3.16
427 428 4.141018 AGTGTTGGAGGGGAAATACACTTT 60.141 41.667 0.00 0.00 42.38 2.66
428 429 4.022329 GTGTTGGAGGGGAAATACACTTTG 60.022 45.833 0.00 0.00 34.56 2.77
429 430 3.449746 TGGAGGGGAAATACACTTTGG 57.550 47.619 0.00 0.00 0.00 3.28
430 431 2.719705 TGGAGGGGAAATACACTTTGGT 59.280 45.455 0.00 0.00 0.00 3.67
431 432 3.141272 TGGAGGGGAAATACACTTTGGTT 59.859 43.478 0.00 0.00 0.00 3.67
432 433 4.157246 GGAGGGGAAATACACTTTGGTTT 58.843 43.478 0.00 0.00 0.00 3.27
433 434 4.219944 GGAGGGGAAATACACTTTGGTTTC 59.780 45.833 0.00 0.00 0.00 2.78
434 435 5.074746 AGGGGAAATACACTTTGGTTTCT 57.925 39.130 0.00 0.00 31.35 2.52
435 436 4.832823 AGGGGAAATACACTTTGGTTTCTG 59.167 41.667 0.00 0.00 31.35 3.02
436 437 4.021456 GGGGAAATACACTTTGGTTTCTGG 60.021 45.833 0.00 0.00 31.35 3.86
437 438 4.587262 GGGAAATACACTTTGGTTTCTGGT 59.413 41.667 0.00 0.00 31.35 4.00
438 439 5.069914 GGGAAATACACTTTGGTTTCTGGTT 59.930 40.000 0.00 0.00 31.35 3.67
439 440 5.983118 GGAAATACACTTTGGTTTCTGGTTG 59.017 40.000 0.00 0.00 31.35 3.77
440 441 6.406512 GGAAATACACTTTGGTTTCTGGTTGT 60.407 38.462 0.00 0.00 31.35 3.32
441 442 7.201839 GGAAATACACTTTGGTTTCTGGTTGTA 60.202 37.037 0.00 0.00 31.35 2.41
442 443 7.833285 AATACACTTTGGTTTCTGGTTGTAT 57.167 32.000 0.00 0.00 0.00 2.29
443 444 5.514274 ACACTTTGGTTTCTGGTTGTATG 57.486 39.130 0.00 0.00 0.00 2.39
444 445 4.953579 ACACTTTGGTTTCTGGTTGTATGT 59.046 37.500 0.00 0.00 0.00 2.29
445 446 6.123651 ACACTTTGGTTTCTGGTTGTATGTA 58.876 36.000 0.00 0.00 0.00 2.29
446 447 6.038936 ACACTTTGGTTTCTGGTTGTATGTAC 59.961 38.462 0.00 0.00 0.00 2.90
447 448 6.038825 CACTTTGGTTTCTGGTTGTATGTACA 59.961 38.462 0.00 0.00 0.00 2.90
448 449 6.038936 ACTTTGGTTTCTGGTTGTATGTACAC 59.961 38.462 0.00 0.00 35.64 2.90
449 450 4.391155 TGGTTTCTGGTTGTATGTACACC 58.609 43.478 0.00 0.00 35.64 4.16
450 451 3.754850 GGTTTCTGGTTGTATGTACACCC 59.245 47.826 0.00 0.24 39.02 4.61
451 452 4.506095 GGTTTCTGGTTGTATGTACACCCT 60.506 45.833 0.00 0.00 39.28 4.34
452 453 5.280113 GGTTTCTGGTTGTATGTACACCCTA 60.280 44.000 0.00 0.00 39.28 3.53
453 454 6.412214 GTTTCTGGTTGTATGTACACCCTAT 58.588 40.000 0.00 0.00 39.28 2.57
454 455 7.364939 GGTTTCTGGTTGTATGTACACCCTATA 60.365 40.741 0.00 0.00 39.28 1.31
455 456 7.924358 TTCTGGTTGTATGTACACCCTATAT 57.076 36.000 0.00 0.00 39.28 0.86
456 457 7.297936 TCTGGTTGTATGTACACCCTATATG 57.702 40.000 0.00 0.00 39.28 1.78
457 458 6.269077 TCTGGTTGTATGTACACCCTATATGG 59.731 42.308 0.00 0.00 39.28 2.74
517 518 9.185680 AGGTAAGAACTATTTTGACAAAACACT 57.814 29.630 15.36 3.23 32.37 3.55
518 519 9.797556 GGTAAGAACTATTTTGACAAAACACTT 57.202 29.630 15.36 15.89 32.37 3.16
521 522 8.911247 AGAACTATTTTGACAAAACACTTGAC 57.089 30.769 15.36 5.14 32.37 3.18
522 523 8.739972 AGAACTATTTTGACAAAACACTTGACT 58.260 29.630 15.36 7.03 32.37 3.41
523 524 9.353999 GAACTATTTTGACAAAACACTTGACTT 57.646 29.630 15.36 0.00 32.37 3.01
525 526 9.783256 ACTATTTTGACAAAACACTTGACTTAC 57.217 29.630 15.36 0.00 32.37 2.34
528 529 9.705290 ATTTTGACAAAACACTTGACTTACTTT 57.295 25.926 15.36 0.00 32.37 2.66
529 530 9.535878 TTTTGACAAAACACTTGACTTACTTTT 57.464 25.926 9.30 0.00 0.00 2.27
531 532 9.615295 TTGACAAAACACTTGACTTACTTTTAC 57.385 29.630 0.00 0.00 0.00 2.01
532 533 8.784994 TGACAAAACACTTGACTTACTTTTACA 58.215 29.630 0.00 0.00 0.00 2.41
533 534 8.959734 ACAAAACACTTGACTTACTTTTACAC 57.040 30.769 0.00 0.00 0.00 2.90
534 535 8.789762 ACAAAACACTTGACTTACTTTTACACT 58.210 29.630 0.00 0.00 0.00 3.55
535 536 9.061610 CAAAACACTTGACTTACTTTTACACTG 57.938 33.333 0.00 0.00 0.00 3.66
536 537 8.556213 AAACACTTGACTTACTTTTACACTGA 57.444 30.769 0.00 0.00 0.00 3.41
537 538 8.732746 AACACTTGACTTACTTTTACACTGAT 57.267 30.769 0.00 0.00 0.00 2.90
538 539 9.826574 AACACTTGACTTACTTTTACACTGATA 57.173 29.630 0.00 0.00 0.00 2.15
539 540 9.998106 ACACTTGACTTACTTTTACACTGATAT 57.002 29.630 0.00 0.00 0.00 1.63
556 557 9.524106 ACACTGATATATAAATGTCGACGAAAA 57.476 29.630 11.62 0.00 0.00 2.29
577 578 3.782889 AACAAAAGTTGACCTCACAGC 57.217 42.857 0.00 0.00 0.00 4.40
578 579 2.722094 ACAAAAGTTGACCTCACAGCA 58.278 42.857 0.00 0.00 0.00 4.41
579 580 3.088532 ACAAAAGTTGACCTCACAGCAA 58.911 40.909 0.00 0.00 0.00 3.91
580 581 3.509575 ACAAAAGTTGACCTCACAGCAAA 59.490 39.130 0.00 0.00 0.00 3.68
581 582 4.021544 ACAAAAGTTGACCTCACAGCAAAA 60.022 37.500 0.00 0.00 0.00 2.44
582 583 4.799564 AAAGTTGACCTCACAGCAAAAA 57.200 36.364 0.00 0.00 0.00 1.94
661 662 8.980143 AATTTGTCTTTTTCGAAAAGAAGTCA 57.020 26.923 21.53 17.37 40.40 3.41
662 663 8.980143 ATTTGTCTTTTTCGAAAAGAAGTCAA 57.020 26.923 21.53 21.13 40.40 3.18
663 664 8.804688 TTTGTCTTTTTCGAAAAGAAGTCAAA 57.195 26.923 26.13 26.13 39.68 2.69
664 665 8.804688 TTGTCTTTTTCGAAAAGAAGTCAAAA 57.195 26.923 21.75 9.48 40.40 2.44
665 666 8.447787 TGTCTTTTTCGAAAAGAAGTCAAAAG 57.552 30.769 21.53 13.50 40.40 2.27
666 667 7.540745 TGTCTTTTTCGAAAAGAAGTCAAAAGG 59.459 33.333 21.53 0.00 40.40 3.11
667 668 7.753580 GTCTTTTTCGAAAAGAAGTCAAAAGGA 59.246 33.333 21.53 2.00 40.40 3.36
668 669 8.466798 TCTTTTTCGAAAAGAAGTCAAAAGGAT 58.533 29.630 21.53 0.00 40.40 3.24
669 670 8.996024 TTTTTCGAAAAGAAGTCAAAAGGATT 57.004 26.923 21.53 0.00 40.40 3.01
670 671 8.996024 TTTTCGAAAAGAAGTCAAAAGGATTT 57.004 26.923 19.08 0.00 39.29 2.17
671 672 8.996024 TTTCGAAAAGAAGTCAAAAGGATTTT 57.004 26.923 8.44 0.00 44.19 1.82
672 673 8.996024 TTCGAAAAGAAGTCAAAAGGATTTTT 57.004 26.923 0.00 0.00 39.19 1.94
698 699 8.722342 TTTTGTATTTTATTTCTCACGAGCAC 57.278 30.769 0.00 0.00 0.00 4.40
699 700 7.428282 TTGTATTTTATTTCTCACGAGCACA 57.572 32.000 0.00 0.00 0.00 4.57
700 701 7.428282 TGTATTTTATTTCTCACGAGCACAA 57.572 32.000 0.00 0.00 0.00 3.33
701 702 8.039603 TGTATTTTATTTCTCACGAGCACAAT 57.960 30.769 0.00 0.00 0.00 2.71
702 703 9.157104 TGTATTTTATTTCTCACGAGCACAATA 57.843 29.630 0.00 0.00 0.00 1.90
703 704 9.638300 GTATTTTATTTCTCACGAGCACAATAG 57.362 33.333 0.00 0.00 0.00 1.73
704 705 7.899178 TTTTATTTCTCACGAGCACAATAGA 57.101 32.000 0.00 0.00 0.00 1.98
705 706 7.899178 TTTATTTCTCACGAGCACAATAGAA 57.101 32.000 0.00 0.00 0.00 2.10
706 707 7.525688 TTATTTCTCACGAGCACAATAGAAG 57.474 36.000 0.00 0.00 0.00 2.85
707 708 3.510388 TCTCACGAGCACAATAGAAGG 57.490 47.619 0.00 0.00 0.00 3.46
708 709 2.826128 TCTCACGAGCACAATAGAAGGT 59.174 45.455 0.00 0.00 0.00 3.50
709 710 3.119459 TCTCACGAGCACAATAGAAGGTC 60.119 47.826 0.00 0.00 0.00 3.85
710 711 2.560981 TCACGAGCACAATAGAAGGTCA 59.439 45.455 0.00 0.00 0.00 4.02
711 712 3.006430 TCACGAGCACAATAGAAGGTCAA 59.994 43.478 0.00 0.00 0.00 3.18
712 713 3.369147 CACGAGCACAATAGAAGGTCAAG 59.631 47.826 0.00 0.00 0.00 3.02
713 714 3.006967 ACGAGCACAATAGAAGGTCAAGT 59.993 43.478 0.00 0.00 0.00 3.16
714 715 3.997021 CGAGCACAATAGAAGGTCAAGTT 59.003 43.478 0.00 0.00 0.00 2.66
715 716 4.452455 CGAGCACAATAGAAGGTCAAGTTT 59.548 41.667 0.00 0.00 0.00 2.66
716 717 5.637810 CGAGCACAATAGAAGGTCAAGTTTA 59.362 40.000 0.00 0.00 0.00 2.01
717 718 6.313905 CGAGCACAATAGAAGGTCAAGTTTAT 59.686 38.462 0.00 0.00 0.00 1.40
718 719 7.148407 CGAGCACAATAGAAGGTCAAGTTTATT 60.148 37.037 0.00 0.00 0.00 1.40
719 720 8.409358 AGCACAATAGAAGGTCAAGTTTATTT 57.591 30.769 0.00 0.00 0.00 1.40
720 721 8.515414 AGCACAATAGAAGGTCAAGTTTATTTC 58.485 33.333 0.00 0.00 0.00 2.17
721 722 8.296713 GCACAATAGAAGGTCAAGTTTATTTCA 58.703 33.333 0.00 0.00 0.00 2.69
792 793 9.453572 TTTTTCTCATATAGGATGCATATGTCC 57.546 33.333 0.00 4.42 37.54 4.02
793 794 6.737720 TCTCATATAGGATGCATATGTCCC 57.262 41.667 0.00 0.00 37.54 4.46
794 795 5.604231 TCTCATATAGGATGCATATGTCCCC 59.396 44.000 0.00 0.00 37.54 4.81
795 796 5.287864 TCATATAGGATGCATATGTCCCCA 58.712 41.667 0.00 0.00 37.54 4.96
796 797 5.912944 TCATATAGGATGCATATGTCCCCAT 59.087 40.000 0.00 0.00 37.54 4.00
797 798 7.081661 TCATATAGGATGCATATGTCCCCATA 58.918 38.462 0.00 5.85 37.54 2.74
798 799 7.740826 TCATATAGGATGCATATGTCCCCATAT 59.259 37.037 0.00 7.61 43.54 1.78
799 800 9.050154 CATATAGGATGCATATGTCCCCATATA 57.950 37.037 0.00 0.00 41.35 0.86
800 801 5.636903 AGGATGCATATGTCCCCATATAC 57.363 43.478 0.00 0.00 41.35 1.47
801 802 4.413520 AGGATGCATATGTCCCCATATACC 59.586 45.833 0.00 0.00 41.35 2.73
802 803 4.165950 GGATGCATATGTCCCCATATACCA 59.834 45.833 0.00 0.00 41.35 3.25
803 804 5.339944 GGATGCATATGTCCCCATATACCAA 60.340 44.000 0.00 0.00 41.35 3.67
804 805 5.590976 TGCATATGTCCCCATATACCAAA 57.409 39.130 4.29 0.00 41.35 3.28
805 806 5.958321 TGCATATGTCCCCATATACCAAAA 58.042 37.500 4.29 0.00 41.35 2.44
806 807 6.009589 TGCATATGTCCCCATATACCAAAAG 58.990 40.000 4.29 0.00 41.35 2.27
807 808 6.010219 GCATATGTCCCCATATACCAAAAGT 58.990 40.000 4.29 0.00 41.35 2.66
808 809 6.493458 GCATATGTCCCCATATACCAAAAGTT 59.507 38.462 4.29 0.00 41.35 2.66
809 810 7.309194 GCATATGTCCCCATATACCAAAAGTTC 60.309 40.741 4.29 0.00 41.35 3.01
810 811 4.862371 TGTCCCCATATACCAAAAGTTCC 58.138 43.478 0.00 0.00 0.00 3.62
811 812 4.212716 GTCCCCATATACCAAAAGTTCCC 58.787 47.826 0.00 0.00 0.00 3.97
812 813 3.205733 TCCCCATATACCAAAAGTTCCCC 59.794 47.826 0.00 0.00 0.00 4.81
813 814 3.206639 CCCCATATACCAAAAGTTCCCCT 59.793 47.826 0.00 0.00 0.00 4.79
814 815 4.470602 CCCATATACCAAAAGTTCCCCTC 58.529 47.826 0.00 0.00 0.00 4.30
902 906 3.516300 TCCTCGGCAGTAGTTAAATCCAA 59.484 43.478 0.00 0.00 0.00 3.53
903 907 4.163458 TCCTCGGCAGTAGTTAAATCCAAT 59.837 41.667 0.00 0.00 0.00 3.16
904 908 4.511826 CCTCGGCAGTAGTTAAATCCAATC 59.488 45.833 0.00 0.00 0.00 2.67
905 909 4.116961 TCGGCAGTAGTTAAATCCAATCG 58.883 43.478 0.00 0.00 0.00 3.34
941 949 6.892658 CTACCATAGCTACATCAAGAGAGT 57.107 41.667 0.00 0.00 0.00 3.24
946 954 6.040278 CCATAGCTACATCAAGAGAGTGAGAA 59.960 42.308 0.00 0.00 0.00 2.87
948 956 6.543430 AGCTACATCAAGAGAGTGAGAATT 57.457 37.500 0.00 0.00 0.00 2.17
949 957 6.339730 AGCTACATCAAGAGAGTGAGAATTG 58.660 40.000 0.00 0.00 0.00 2.32
953 961 4.199432 TCAAGAGAGTGAGAATTGGAGC 57.801 45.455 0.00 0.00 0.00 4.70
955 963 2.175202 AGAGAGTGAGAATTGGAGCGT 58.825 47.619 0.00 0.00 0.00 5.07
1095 1126 0.508641 GCATGTACATCATCGCCGTC 59.491 55.000 5.07 0.00 34.09 4.79
1219 2268 4.224762 ACCCTACCTAGCTAGTTCAATCC 58.775 47.826 19.31 0.00 0.00 3.01
1222 2271 5.453480 CCCTACCTAGCTAGTTCAATCCAAC 60.453 48.000 19.31 0.00 0.00 3.77
1223 2272 4.124851 ACCTAGCTAGTTCAATCCAACG 57.875 45.455 19.31 2.20 0.00 4.10
1228 2277 1.659098 CTAGTTCAATCCAACGCCGAC 59.341 52.381 0.00 0.00 0.00 4.79
1229 2278 0.034896 AGTTCAATCCAACGCCGACT 59.965 50.000 0.00 0.00 0.00 4.18
1275 2424 2.202797 CACCCCACGATCGAGCAG 60.203 66.667 24.34 10.16 0.00 4.24
1333 5068 3.626996 TTGGTCATGCGCAGGGGAG 62.627 63.158 23.25 6.23 0.00 4.30
1418 5156 2.226674 TGCGTTGCGGTTGATTAATTCA 59.773 40.909 0.00 0.00 0.00 2.57
1426 5164 3.550030 CGGTTGATTAATTCAATCCGCCC 60.550 47.826 17.38 9.22 45.77 6.13
1468 5214 2.668457 GCATGACGACAGAGTACAAAGG 59.332 50.000 0.00 0.00 0.00 3.11
1500 5281 0.028770 CATGTGGTTTGTTGCGTCGT 59.971 50.000 0.00 0.00 0.00 4.34
1501 5282 0.736053 ATGTGGTTTGTTGCGTCGTT 59.264 45.000 0.00 0.00 0.00 3.85
1618 5399 1.594293 CGTCACCTTCGTGTTGGCT 60.594 57.895 0.00 0.00 41.09 4.75
1768 5549 3.590466 GACCAAGGGCCAGCACCAT 62.590 63.158 6.18 0.00 0.00 3.55
1834 5630 1.153647 GACCATCATGACCGTCGCA 60.154 57.895 0.00 0.00 0.00 5.10
2169 5965 3.145286 GCTCCATCATTCTAAAGGAGGC 58.855 50.000 8.67 0.00 44.68 4.70
2197 5998 7.164122 TCACTCTCGGAAGGTACGTATTATAT 58.836 38.462 0.00 0.00 0.00 0.86
2936 6838 3.730761 GCATCCCGCATCCGCATC 61.731 66.667 0.00 0.00 41.79 3.91
2937 6839 2.031616 CATCCCGCATCCGCATCT 59.968 61.111 0.00 0.00 38.40 2.90
2939 6841 0.107993 CATCCCGCATCCGCATCTAT 60.108 55.000 0.00 0.00 38.40 1.98
2940 6842 0.107993 ATCCCGCATCCGCATCTATG 60.108 55.000 0.00 0.00 38.40 2.23
2942 6844 1.293963 CCCGCATCCGCATCTATGTG 61.294 60.000 0.00 0.00 38.40 3.21
2943 6845 0.319813 CCGCATCCGCATCTATGTGA 60.320 55.000 5.09 0.00 40.61 3.58
2944 6846 1.066136 CGCATCCGCATCTATGTGAG 58.934 55.000 5.09 0.00 40.61 3.51
2946 6848 2.064762 GCATCCGCATCTATGTGAGAC 58.935 52.381 5.09 0.00 40.61 3.36
2947 6849 2.546584 GCATCCGCATCTATGTGAGACA 60.547 50.000 5.09 0.00 40.61 3.41
2948 6850 2.871182 TCCGCATCTATGTGAGACAC 57.129 50.000 5.09 0.00 40.61 3.67
2949 6851 2.379005 TCCGCATCTATGTGAGACACT 58.621 47.619 5.09 0.00 40.61 3.55
2952 6854 4.036852 TCCGCATCTATGTGAGACACTAAG 59.963 45.833 5.09 0.00 40.61 2.18
2953 6855 4.202060 CCGCATCTATGTGAGACACTAAGT 60.202 45.833 5.09 0.00 40.61 2.24
3039 6964 0.378962 TTCGTGAACTTTTGTGCGGG 59.621 50.000 0.00 0.00 0.00 6.13
3043 6968 2.542824 CGTGAACTTTTGTGCGGGAAAT 60.543 45.455 0.00 0.00 0.00 2.17
3085 7010 8.587952 AAACTTCAATTGCACCTTTTATGTAC 57.412 30.769 0.00 0.00 0.00 2.90
3125 7885 0.521291 TTGCCCAGAATTTCTTCGCG 59.479 50.000 0.00 0.00 36.45 5.87
3134 7894 5.790495 CCAGAATTTCTTCGCGAAACTTTAG 59.210 40.000 23.54 10.05 43.90 1.85
3186 8923 8.994429 TGAAAAAGTTCAGAAATGTTTGCTTA 57.006 26.923 3.44 0.00 38.88 3.09
3236 8973 4.736126 CCAGGTTCCATTGGGTATTTTC 57.264 45.455 2.09 0.00 34.93 2.29
3329 9077 9.880157 AGATGAAAACAGGGATTTATCAAATTG 57.120 29.630 0.00 0.00 0.00 2.32
3349 9097 5.689383 TTGTGAAAGTGAGCATAAAGGTC 57.311 39.130 0.00 0.00 44.96 3.85
3375 9123 0.108138 CGATGTGGAGGGTGAGGTTC 60.108 60.000 0.00 0.00 0.00 3.62
3442 9190 4.195334 CCCCGGCCCATCTCCTTG 62.195 72.222 0.00 0.00 0.00 3.61
3447 10073 0.390860 CGGCCCATCTCCTTGACTAG 59.609 60.000 0.00 0.00 0.00 2.57
3476 10102 1.341482 TGGCTGTCTTTTGGGTTGACA 60.341 47.619 0.00 0.00 38.24 3.58
3499 12625 4.708421 AGTAGTGCAACGGAGGTAAGAATA 59.292 41.667 0.00 0.00 45.86 1.75
3500 12626 4.124851 AGTGCAACGGAGGTAAGAATAG 57.875 45.455 0.00 0.00 45.86 1.73
3501 12627 3.118738 AGTGCAACGGAGGTAAGAATAGG 60.119 47.826 0.00 0.00 45.86 2.57
3502 12628 3.101437 TGCAACGGAGGTAAGAATAGGA 58.899 45.455 0.00 0.00 0.00 2.94
3503 12629 3.516300 TGCAACGGAGGTAAGAATAGGAA 59.484 43.478 0.00 0.00 0.00 3.36
3504 12630 4.163458 TGCAACGGAGGTAAGAATAGGAAT 59.837 41.667 0.00 0.00 0.00 3.01
3505 12631 4.511826 GCAACGGAGGTAAGAATAGGAATG 59.488 45.833 0.00 0.00 0.00 2.67
3506 12632 5.684030 GCAACGGAGGTAAGAATAGGAATGA 60.684 44.000 0.00 0.00 0.00 2.57
3507 12633 6.346096 CAACGGAGGTAAGAATAGGAATGAA 58.654 40.000 0.00 0.00 0.00 2.57
3508 12634 6.163135 ACGGAGGTAAGAATAGGAATGAAG 57.837 41.667 0.00 0.00 0.00 3.02
3509 12635 5.070580 ACGGAGGTAAGAATAGGAATGAAGG 59.929 44.000 0.00 0.00 0.00 3.46
3510 12636 5.070580 CGGAGGTAAGAATAGGAATGAAGGT 59.929 44.000 0.00 0.00 0.00 3.50
3511 12637 6.267014 CGGAGGTAAGAATAGGAATGAAGGTA 59.733 42.308 0.00 0.00 0.00 3.08
3512 12638 7.201974 CGGAGGTAAGAATAGGAATGAAGGTAA 60.202 40.741 0.00 0.00 0.00 2.85
3513 12639 8.151596 GGAGGTAAGAATAGGAATGAAGGTAAG 58.848 40.741 0.00 0.00 0.00 2.34
3514 12640 8.855804 AGGTAAGAATAGGAATGAAGGTAAGA 57.144 34.615 0.00 0.00 0.00 2.10
3515 12641 9.280456 AGGTAAGAATAGGAATGAAGGTAAGAA 57.720 33.333 0.00 0.00 0.00 2.52
3518 12644 8.986929 AAGAATAGGAATGAAGGTAAGAATGG 57.013 34.615 0.00 0.00 0.00 3.16
3519 12645 7.521669 AGAATAGGAATGAAGGTAAGAATGGG 58.478 38.462 0.00 0.00 0.00 4.00
3520 12646 7.350921 AGAATAGGAATGAAGGTAAGAATGGGA 59.649 37.037 0.00 0.00 0.00 4.37
3521 12647 5.796502 AGGAATGAAGGTAAGAATGGGAA 57.203 39.130 0.00 0.00 0.00 3.97
3522 12648 5.510430 AGGAATGAAGGTAAGAATGGGAAC 58.490 41.667 0.00 0.00 0.00 3.62
3523 12649 4.335594 GGAATGAAGGTAAGAATGGGAACG 59.664 45.833 0.00 0.00 0.00 3.95
3524 12650 3.343941 TGAAGGTAAGAATGGGAACGG 57.656 47.619 0.00 0.00 0.00 4.44
3525 12651 2.026636 TGAAGGTAAGAATGGGAACGGG 60.027 50.000 0.00 0.00 0.00 5.28
3526 12652 0.255033 AGGTAAGAATGGGAACGGGC 59.745 55.000 0.00 0.00 0.00 6.13
3527 12653 0.255033 GGTAAGAATGGGAACGGGCT 59.745 55.000 0.00 0.00 0.00 5.19
3528 12654 1.379527 GTAAGAATGGGAACGGGCTG 58.620 55.000 0.00 0.00 0.00 4.85
3529 12655 1.065709 GTAAGAATGGGAACGGGCTGA 60.066 52.381 0.00 0.00 0.00 4.26
3530 12656 0.322546 AAGAATGGGAACGGGCTGAC 60.323 55.000 0.00 0.00 0.00 3.51
3531 12657 2.046314 AATGGGAACGGGCTGACG 60.046 61.111 0.00 0.00 40.31 4.35
3532 12658 3.622060 AATGGGAACGGGCTGACGG 62.622 63.158 0.00 0.00 38.39 4.79
3534 12660 3.384532 GGGAACGGGCTGACGGTA 61.385 66.667 0.00 0.00 38.39 4.02
3535 12661 2.183555 GGAACGGGCTGACGGTAG 59.816 66.667 0.00 0.00 38.39 3.18
3536 12662 2.508663 GAACGGGCTGACGGTAGC 60.509 66.667 0.00 4.76 42.94 3.58
3543 12669 2.098293 GCTGACGGTAGCCATTTGG 58.902 57.895 2.10 0.00 37.73 3.28
3544 12670 1.376609 GCTGACGGTAGCCATTTGGG 61.377 60.000 0.00 0.00 37.73 4.12
3545 12671 0.251916 CTGACGGTAGCCATTTGGGA 59.748 55.000 0.00 0.00 40.01 4.37
3546 12672 0.035820 TGACGGTAGCCATTTGGGAC 60.036 55.000 0.00 0.00 40.01 4.46
3547 12673 0.035820 GACGGTAGCCATTTGGGACA 60.036 55.000 0.00 0.00 40.01 4.02
3548 12674 0.623723 ACGGTAGCCATTTGGGACAT 59.376 50.000 0.00 0.00 39.30 3.06
3549 12675 1.005450 ACGGTAGCCATTTGGGACATT 59.995 47.619 0.00 0.00 39.30 2.71
3550 12676 2.240160 ACGGTAGCCATTTGGGACATTA 59.760 45.455 0.00 0.00 39.30 1.90
3551 12677 2.878406 CGGTAGCCATTTGGGACATTAG 59.122 50.000 0.00 0.00 39.30 1.73
3552 12678 2.623416 GGTAGCCATTTGGGACATTAGC 59.377 50.000 0.00 0.00 39.30 3.09
3553 12679 1.780503 AGCCATTTGGGACATTAGCC 58.219 50.000 0.00 0.00 39.30 3.93
3554 12680 0.752658 GCCATTTGGGACATTAGCCC 59.247 55.000 0.00 0.00 46.22 5.19
3559 12685 4.581093 GGGACATTAGCCCGGCCC 62.581 72.222 5.55 0.00 35.50 5.80
3560 12686 3.804329 GGACATTAGCCCGGCCCA 61.804 66.667 5.55 0.00 0.00 5.36
3561 12687 2.274104 GACATTAGCCCGGCCCAA 59.726 61.111 5.55 0.56 0.00 4.12
3562 12688 1.379309 GACATTAGCCCGGCCCAAA 60.379 57.895 5.55 0.00 0.00 3.28
3563 12689 0.968393 GACATTAGCCCGGCCCAAAA 60.968 55.000 5.55 0.00 0.00 2.44
3564 12690 0.543174 ACATTAGCCCGGCCCAAAAA 60.543 50.000 5.55 0.00 0.00 1.94
3582 12708 4.525912 AAAAATGTGAAGCCAGTGGATC 57.474 40.909 15.20 10.92 0.00 3.36
3583 12709 3.446442 AAATGTGAAGCCAGTGGATCT 57.554 42.857 15.20 0.00 0.00 2.75
3584 12710 3.446442 AATGTGAAGCCAGTGGATCTT 57.554 42.857 15.20 7.63 0.00 2.40
3585 12711 2.957402 TGTGAAGCCAGTGGATCTTT 57.043 45.000 15.20 0.47 0.00 2.52
3586 12712 3.228188 TGTGAAGCCAGTGGATCTTTT 57.772 42.857 15.20 0.00 0.00 2.27
3587 12713 2.886523 TGTGAAGCCAGTGGATCTTTTG 59.113 45.455 15.20 0.00 0.00 2.44
3588 12714 2.229784 GTGAAGCCAGTGGATCTTTTGG 59.770 50.000 15.20 0.00 0.00 3.28
3589 12715 1.821136 GAAGCCAGTGGATCTTTTGGG 59.179 52.381 15.20 0.89 0.00 4.12
3590 12716 0.779997 AGCCAGTGGATCTTTTGGGT 59.220 50.000 15.20 8.23 36.65 4.51
3591 12717 1.147817 AGCCAGTGGATCTTTTGGGTT 59.852 47.619 15.20 0.00 38.17 4.11
3592 12718 1.273327 GCCAGTGGATCTTTTGGGTTG 59.727 52.381 15.20 0.00 0.00 3.77
3593 12719 2.875296 CCAGTGGATCTTTTGGGTTGA 58.125 47.619 1.68 0.00 0.00 3.18
3594 12720 2.558359 CCAGTGGATCTTTTGGGTTGAC 59.442 50.000 1.68 0.00 0.00 3.18
3595 12721 3.490348 CAGTGGATCTTTTGGGTTGACT 58.510 45.455 0.00 0.00 0.00 3.41
3596 12722 3.891366 CAGTGGATCTTTTGGGTTGACTT 59.109 43.478 0.00 0.00 0.00 3.01
3597 12723 4.022849 CAGTGGATCTTTTGGGTTGACTTC 60.023 45.833 0.00 0.00 0.00 3.01
3598 12724 3.058224 GTGGATCTTTTGGGTTGACTTCG 60.058 47.826 0.00 0.00 0.00 3.79
3599 12725 3.146847 GGATCTTTTGGGTTGACTTCGT 58.853 45.455 0.00 0.00 0.00 3.85
3600 12726 4.202377 TGGATCTTTTGGGTTGACTTCGTA 60.202 41.667 0.00 0.00 0.00 3.43
3601 12727 4.758165 GGATCTTTTGGGTTGACTTCGTAA 59.242 41.667 0.00 0.00 0.00 3.18
3602 12728 5.239963 GGATCTTTTGGGTTGACTTCGTAAA 59.760 40.000 0.00 0.00 0.00 2.01
3603 12729 5.744666 TCTTTTGGGTTGACTTCGTAAAG 57.255 39.130 0.00 0.00 38.54 1.85
3605 12731 6.347696 TCTTTTGGGTTGACTTCGTAAAGTA 58.652 36.000 0.00 0.00 45.80 2.24
3606 12732 6.822676 TCTTTTGGGTTGACTTCGTAAAGTAA 59.177 34.615 0.00 0.00 45.80 2.24
3607 12733 5.989551 TTGGGTTGACTTCGTAAAGTAAC 57.010 39.130 0.00 0.00 45.80 2.50
3608 12734 5.280654 TGGGTTGACTTCGTAAAGTAACT 57.719 39.130 0.00 0.00 45.80 2.24
3609 12735 5.291971 TGGGTTGACTTCGTAAAGTAACTC 58.708 41.667 0.00 0.00 45.80 3.01
3610 12736 4.383948 GGGTTGACTTCGTAAAGTAACTCG 59.616 45.833 0.00 0.00 45.80 4.18
3611 12737 4.383948 GGTTGACTTCGTAAAGTAACTCGG 59.616 45.833 0.00 0.00 45.80 4.63
3612 12738 4.164822 TGACTTCGTAAAGTAACTCGGG 57.835 45.455 0.00 0.00 45.80 5.14
3613 12739 2.919859 GACTTCGTAAAGTAACTCGGGC 59.080 50.000 0.00 0.00 45.80 6.13
3614 12740 2.560105 ACTTCGTAAAGTAACTCGGGCT 59.440 45.455 0.00 0.00 43.98 5.19
3615 12741 3.758554 ACTTCGTAAAGTAACTCGGGCTA 59.241 43.478 0.00 0.00 43.98 3.93
3616 12742 4.218417 ACTTCGTAAAGTAACTCGGGCTAA 59.782 41.667 0.00 0.00 43.98 3.09
3617 12743 4.361451 TCGTAAAGTAACTCGGGCTAAG 57.639 45.455 0.00 0.00 0.00 2.18
3618 12744 4.009675 TCGTAAAGTAACTCGGGCTAAGA 58.990 43.478 0.00 0.00 0.00 2.10
3619 12745 4.458989 TCGTAAAGTAACTCGGGCTAAGAA 59.541 41.667 0.00 0.00 0.00 2.52
3620 12746 5.126061 TCGTAAAGTAACTCGGGCTAAGAAT 59.874 40.000 0.00 0.00 0.00 2.40
3663 12796 2.372074 GGGACATTAGCCCGACCCA 61.372 63.158 0.00 0.00 35.50 4.51
3760 12894 1.004394 GGAGGACCGACCCAGATTTTT 59.996 52.381 0.13 0.00 40.05 1.94
3761 12895 2.237893 GGAGGACCGACCCAGATTTTTA 59.762 50.000 0.13 0.00 40.05 1.52
3786 12920 5.589855 TGTCTCTGGTTGTAATATGCCATTG 59.410 40.000 0.00 0.00 0.00 2.82
3787 12921 5.822519 GTCTCTGGTTGTAATATGCCATTGA 59.177 40.000 0.00 0.00 0.00 2.57
3790 12924 6.862209 TCTGGTTGTAATATGCCATTGAAAC 58.138 36.000 0.00 0.00 0.00 2.78
3791 12925 5.645624 TGGTTGTAATATGCCATTGAAACG 58.354 37.500 0.00 0.00 0.00 3.60
3807 12941 0.596082 AACGGCACATACCTTTGCAC 59.404 50.000 0.00 0.00 40.75 4.57
3808 12942 0.536233 ACGGCACATACCTTTGCACA 60.536 50.000 0.00 0.00 40.75 4.57
3809 12943 0.810648 CGGCACATACCTTTGCACAT 59.189 50.000 0.00 0.00 40.75 3.21
3810 12944 1.202114 CGGCACATACCTTTGCACATT 59.798 47.619 0.00 0.00 40.75 2.71
3811 12945 2.352617 CGGCACATACCTTTGCACATTT 60.353 45.455 0.00 0.00 40.75 2.32
3812 12946 3.663025 GGCACATACCTTTGCACATTTT 58.337 40.909 0.00 0.00 40.75 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.916883 AGTCGACTCAAATTTTGCAATCTTG 59.083 36.000 13.58 4.69 0.00 3.02
6 7 4.024893 GTCTCAGTCGACTCAAATTTTGCA 60.025 41.667 16.96 0.00 0.00 4.08
7 8 4.024893 TGTCTCAGTCGACTCAAATTTTGC 60.025 41.667 16.96 0.18 35.00 3.68
12 13 6.867550 TCATTATGTCTCAGTCGACTCAAAT 58.132 36.000 16.96 5.88 35.00 2.32
13 14 6.267496 TCATTATGTCTCAGTCGACTCAAA 57.733 37.500 16.96 8.24 35.00 2.69
16 17 5.885881 ACTTCATTATGTCTCAGTCGACTC 58.114 41.667 16.96 4.94 35.00 3.36
30 31 3.319405 AGCATCGACCGAGACTTCATTAT 59.681 43.478 0.00 0.00 0.00 1.28
43 44 8.709386 AAGATAACATGAATATAGCATCGACC 57.291 34.615 0.00 0.00 0.00 4.79
54 55 9.268268 GGATTTCCACGTAAGATAACATGAATA 57.732 33.333 0.00 0.00 43.62 1.75
123 124 0.886563 CGACCGGGACTCAGTAAACT 59.113 55.000 6.32 0.00 0.00 2.66
127 128 0.675837 CAGTCGACCGGGACTCAGTA 60.676 60.000 13.01 0.00 45.20 2.74
131 132 0.748729 ATCTCAGTCGACCGGGACTC 60.749 60.000 13.01 0.00 45.20 3.36
138 139 1.335496 GTGGCTAGATCTCAGTCGACC 59.665 57.143 13.01 0.00 0.00 4.79
145 146 2.254152 AAGGGTGTGGCTAGATCTCA 57.746 50.000 0.00 0.00 0.00 3.27
151 152 6.351117 GCCTATATACTAAAGGGTGTGGCTAG 60.351 46.154 0.00 0.00 33.45 3.42
155 156 5.818678 TGCCTATATACTAAAGGGTGTGG 57.181 43.478 0.00 0.00 0.00 4.17
200 201 6.090129 CAGTAGAGTTGTAGAGAGCAGTTTC 58.910 44.000 0.00 0.00 0.00 2.78
213 214 5.936372 TGACGTACAGATACAGTAGAGTTGT 59.064 40.000 0.00 0.00 0.00 3.32
249 250 1.118356 ACTCGAGATGGATCCTGGGC 61.118 60.000 21.68 0.00 0.00 5.36
251 252 1.069823 CCAACTCGAGATGGATCCTGG 59.930 57.143 32.01 14.19 40.03 4.45
255 256 2.159043 TCAAGCCAACTCGAGATGGATC 60.159 50.000 37.53 23.77 40.03 3.36
272 273 2.045131 GGCTTGGCTCAGGCTCAAG 61.045 63.158 8.81 8.81 43.23 3.02
362 363 1.080025 GTGTAGGGTCACGCTGGAC 60.080 63.158 4.23 0.00 37.06 4.02
363 364 2.280552 GGTGTAGGGTCACGCTGGA 61.281 63.158 4.23 0.00 39.00 3.86
364 365 2.264794 GGTGTAGGGTCACGCTGG 59.735 66.667 4.23 0.00 39.00 4.85
365 366 2.264794 GGGTGTAGGGTCACGCTG 59.735 66.667 4.23 0.00 44.24 5.18
367 368 2.577593 GAGGGTGTAGGGTCACGC 59.422 66.667 5.90 5.90 46.70 5.34
368 369 1.608336 TGGAGGGTGTAGGGTCACG 60.608 63.158 0.00 0.00 39.00 4.35
377 378 2.329539 CTGTGCACAGTGGAGGGTGT 62.330 60.000 34.04 0.00 39.09 4.16
398 399 2.674380 CCCTCCAACACTGCTGCC 60.674 66.667 0.00 0.00 0.00 4.85
405 406 3.434940 AGTGTATTTCCCCTCCAACAC 57.565 47.619 0.00 0.00 37.96 3.32
406 407 4.148838 CAAAGTGTATTTCCCCTCCAACA 58.851 43.478 0.00 0.00 0.00 3.33
411 412 5.048013 CAGAAACCAAAGTGTATTTCCCCTC 60.048 44.000 0.00 0.00 32.56 4.30
412 413 4.832823 CAGAAACCAAAGTGTATTTCCCCT 59.167 41.667 0.00 0.00 32.56 4.79
413 414 4.021456 CCAGAAACCAAAGTGTATTTCCCC 60.021 45.833 0.00 0.00 32.56 4.81
414 415 4.587262 ACCAGAAACCAAAGTGTATTTCCC 59.413 41.667 0.00 0.00 32.56 3.97
415 416 5.784578 ACCAGAAACCAAAGTGTATTTCC 57.215 39.130 0.00 0.00 32.56 3.13
416 417 6.569780 ACAACCAGAAACCAAAGTGTATTTC 58.430 36.000 0.00 0.00 0.00 2.17
417 418 6.538945 ACAACCAGAAACCAAAGTGTATTT 57.461 33.333 0.00 0.00 0.00 1.40
418 419 7.286775 ACATACAACCAGAAACCAAAGTGTATT 59.713 33.333 0.00 0.00 0.00 1.89
419 420 6.775629 ACATACAACCAGAAACCAAAGTGTAT 59.224 34.615 0.00 0.00 0.00 2.29
420 421 6.123651 ACATACAACCAGAAACCAAAGTGTA 58.876 36.000 0.00 0.00 0.00 2.90
421 422 4.953579 ACATACAACCAGAAACCAAAGTGT 59.046 37.500 0.00 0.00 0.00 3.55
422 423 5.514274 ACATACAACCAGAAACCAAAGTG 57.486 39.130 0.00 0.00 0.00 3.16
423 424 6.038936 GTGTACATACAACCAGAAACCAAAGT 59.961 38.462 0.00 0.00 38.04 2.66
424 425 6.435428 GTGTACATACAACCAGAAACCAAAG 58.565 40.000 0.00 0.00 38.04 2.77
425 426 5.299782 GGTGTACATACAACCAGAAACCAAA 59.700 40.000 0.00 0.00 37.94 3.28
426 427 4.822896 GGTGTACATACAACCAGAAACCAA 59.177 41.667 0.00 0.00 37.94 3.67
427 428 4.391155 GGTGTACATACAACCAGAAACCA 58.609 43.478 0.00 0.00 37.94 3.67
491 492 9.185680 AGTGTTTTGTCAAAATAGTTCTTACCT 57.814 29.630 13.65 0.34 32.22 3.08
492 493 9.797556 AAGTGTTTTGTCAAAATAGTTCTTACC 57.202 29.630 17.46 2.76 31.98 2.85
495 496 9.353999 GTCAAGTGTTTTGTCAAAATAGTTCTT 57.646 29.630 19.36 11.77 34.29 2.52
496 497 8.739972 AGTCAAGTGTTTTGTCAAAATAGTTCT 58.260 29.630 19.36 13.92 34.29 3.01
497 498 8.911247 AGTCAAGTGTTTTGTCAAAATAGTTC 57.089 30.769 19.36 12.43 34.29 3.01
499 500 9.783256 GTAAGTCAAGTGTTTTGTCAAAATAGT 57.217 29.630 13.65 11.04 32.22 2.12
502 503 9.705290 AAAGTAAGTCAAGTGTTTTGTCAAAAT 57.295 25.926 13.65 0.00 32.22 1.82
503 504 9.535878 AAAAGTAAGTCAAGTGTTTTGTCAAAA 57.464 25.926 6.65 6.65 0.00 2.44
505 506 9.615295 GTAAAAGTAAGTCAAGTGTTTTGTCAA 57.385 29.630 0.00 0.00 0.00 3.18
506 507 8.784994 TGTAAAAGTAAGTCAAGTGTTTTGTCA 58.215 29.630 0.00 0.00 0.00 3.58
507 508 9.058424 GTGTAAAAGTAAGTCAAGTGTTTTGTC 57.942 33.333 0.00 0.00 0.00 3.18
508 509 8.789762 AGTGTAAAAGTAAGTCAAGTGTTTTGT 58.210 29.630 0.00 0.00 0.00 2.83
509 510 9.061610 CAGTGTAAAAGTAAGTCAAGTGTTTTG 57.938 33.333 0.00 0.00 0.00 2.44
510 511 9.005777 TCAGTGTAAAAGTAAGTCAAGTGTTTT 57.994 29.630 0.00 0.00 0.00 2.43
511 512 8.556213 TCAGTGTAAAAGTAAGTCAAGTGTTT 57.444 30.769 0.00 0.00 0.00 2.83
512 513 8.732746 ATCAGTGTAAAAGTAAGTCAAGTGTT 57.267 30.769 0.00 0.00 0.00 3.32
513 514 9.998106 ATATCAGTGTAAAAGTAAGTCAAGTGT 57.002 29.630 0.00 0.00 0.00 3.55
530 531 9.524106 TTTTCGTCGACATTTATATATCAGTGT 57.476 29.630 17.16 0.00 0.00 3.55
554 555 4.929211 GCTGTGAGGTCAACTTTTGTTTTT 59.071 37.500 0.00 0.00 41.35 1.94
555 556 4.021544 TGCTGTGAGGTCAACTTTTGTTTT 60.022 37.500 0.00 0.00 41.35 2.43
556 557 3.509575 TGCTGTGAGGTCAACTTTTGTTT 59.490 39.130 0.00 0.00 41.35 2.83
557 558 3.088532 TGCTGTGAGGTCAACTTTTGTT 58.911 40.909 0.00 0.00 44.66 2.83
558 559 2.722094 TGCTGTGAGGTCAACTTTTGT 58.278 42.857 0.00 0.00 0.00 2.83
559 560 3.781079 TTGCTGTGAGGTCAACTTTTG 57.219 42.857 0.00 0.00 0.00 2.44
560 561 4.799564 TTTTGCTGTGAGGTCAACTTTT 57.200 36.364 0.00 0.00 0.00 2.27
561 562 4.799564 TTTTTGCTGTGAGGTCAACTTT 57.200 36.364 0.00 0.00 0.00 2.66
635 636 9.418045 TGACTTCTTTTCGAAAAAGACAAATTT 57.582 25.926 22.67 2.63 36.14 1.82
636 637 8.980143 TGACTTCTTTTCGAAAAAGACAAATT 57.020 26.923 22.67 7.92 36.14 1.82
637 638 8.980143 TTGACTTCTTTTCGAAAAAGACAAAT 57.020 26.923 24.55 9.79 36.14 2.32
638 639 8.804688 TTTGACTTCTTTTCGAAAAAGACAAA 57.195 26.923 28.61 28.61 36.14 2.83
639 640 8.804688 TTTTGACTTCTTTTCGAAAAAGACAA 57.195 26.923 23.70 23.70 36.14 3.18
640 641 7.540745 CCTTTTGACTTCTTTTCGAAAAAGACA 59.459 33.333 22.67 19.73 36.14 3.41
641 642 7.753580 TCCTTTTGACTTCTTTTCGAAAAAGAC 59.246 33.333 22.67 17.74 36.14 3.01
642 643 7.822658 TCCTTTTGACTTCTTTTCGAAAAAGA 58.177 30.769 22.67 18.11 31.77 2.52
643 644 8.634475 ATCCTTTTGACTTCTTTTCGAAAAAG 57.366 30.769 22.67 19.56 30.73 2.27
644 645 8.996024 AATCCTTTTGACTTCTTTTCGAAAAA 57.004 26.923 22.67 9.49 0.00 1.94
645 646 8.996024 AAATCCTTTTGACTTCTTTTCGAAAA 57.004 26.923 21.35 21.35 0.00 2.29
646 647 8.996024 AAAATCCTTTTGACTTCTTTTCGAAA 57.004 26.923 6.47 6.47 0.00 3.46
647 648 8.996024 AAAAATCCTTTTGACTTCTTTTCGAA 57.004 26.923 0.00 0.00 33.39 3.71
672 673 9.176181 GTGCTCGTGAGAAATAAAATACAAAAA 57.824 29.630 0.00 0.00 41.32 1.94
673 674 8.346300 TGTGCTCGTGAGAAATAAAATACAAAA 58.654 29.630 0.00 0.00 41.32 2.44
674 675 7.866729 TGTGCTCGTGAGAAATAAAATACAAA 58.133 30.769 0.00 0.00 41.32 2.83
675 676 7.428282 TGTGCTCGTGAGAAATAAAATACAA 57.572 32.000 0.00 0.00 41.32 2.41
676 677 7.428282 TTGTGCTCGTGAGAAATAAAATACA 57.572 32.000 0.00 0.00 41.32 2.29
677 678 9.638300 CTATTGTGCTCGTGAGAAATAAAATAC 57.362 33.333 0.00 0.00 41.32 1.89
678 679 9.594478 TCTATTGTGCTCGTGAGAAATAAAATA 57.406 29.630 0.00 0.00 41.32 1.40
679 680 8.492673 TCTATTGTGCTCGTGAGAAATAAAAT 57.507 30.769 0.00 0.00 41.32 1.82
680 681 7.899178 TCTATTGTGCTCGTGAGAAATAAAA 57.101 32.000 0.00 0.00 41.32 1.52
681 682 7.064609 CCTTCTATTGTGCTCGTGAGAAATAAA 59.935 37.037 0.00 0.00 41.32 1.40
682 683 6.535150 CCTTCTATTGTGCTCGTGAGAAATAA 59.465 38.462 0.00 0.00 41.32 1.40
683 684 6.042777 CCTTCTATTGTGCTCGTGAGAAATA 58.957 40.000 0.00 1.49 41.32 1.40
684 685 4.872691 CCTTCTATTGTGCTCGTGAGAAAT 59.127 41.667 0.00 0.41 41.32 2.17
685 686 4.245660 CCTTCTATTGTGCTCGTGAGAAA 58.754 43.478 0.00 0.00 41.32 2.52
686 687 3.258372 ACCTTCTATTGTGCTCGTGAGAA 59.742 43.478 0.00 0.00 41.32 2.87
687 688 2.826128 ACCTTCTATTGTGCTCGTGAGA 59.174 45.455 0.00 0.00 39.12 3.27
688 689 3.182967 GACCTTCTATTGTGCTCGTGAG 58.817 50.000 0.00 0.00 0.00 3.51
689 690 2.560981 TGACCTTCTATTGTGCTCGTGA 59.439 45.455 0.00 0.00 0.00 4.35
690 691 2.959516 TGACCTTCTATTGTGCTCGTG 58.040 47.619 0.00 0.00 0.00 4.35
691 692 3.006967 ACTTGACCTTCTATTGTGCTCGT 59.993 43.478 0.00 0.00 0.00 4.18
692 693 3.589988 ACTTGACCTTCTATTGTGCTCG 58.410 45.455 0.00 0.00 0.00 5.03
693 694 5.948992 AAACTTGACCTTCTATTGTGCTC 57.051 39.130 0.00 0.00 0.00 4.26
694 695 8.409358 AAATAAACTTGACCTTCTATTGTGCT 57.591 30.769 0.00 0.00 0.00 4.40
695 696 8.296713 TGAAATAAACTTGACCTTCTATTGTGC 58.703 33.333 0.00 0.00 0.00 4.57
766 767 9.453572 GGACATATGCATCCTATATGAGAAAAA 57.546 33.333 0.19 0.00 39.67 1.94
767 768 8.049117 GGGACATATGCATCCTATATGAGAAAA 58.951 37.037 0.19 0.00 39.67 2.29
768 769 7.365921 GGGGACATATGCATCCTATATGAGAAA 60.366 40.741 0.19 0.00 39.67 2.52
769 770 6.100279 GGGGACATATGCATCCTATATGAGAA 59.900 42.308 0.19 0.00 39.67 2.87
770 771 5.604231 GGGGACATATGCATCCTATATGAGA 59.396 44.000 0.19 0.00 39.67 3.27
771 772 5.367644 TGGGGACATATGCATCCTATATGAG 59.632 44.000 0.19 0.00 39.67 2.90
772 773 5.287864 TGGGGACATATGCATCCTATATGA 58.712 41.667 0.19 0.00 39.67 2.15
773 774 5.635278 TGGGGACATATGCATCCTATATG 57.365 43.478 0.19 3.34 41.85 1.78
789 790 4.212716 GGGAACTTTTGGTATATGGGGAC 58.787 47.826 0.00 0.00 0.00 4.46
790 791 3.205733 GGGGAACTTTTGGTATATGGGGA 59.794 47.826 0.00 0.00 0.00 4.81
791 792 3.206639 AGGGGAACTTTTGGTATATGGGG 59.793 47.826 0.00 0.00 0.00 4.96
792 793 4.470602 GAGGGGAACTTTTGGTATATGGG 58.529 47.826 0.00 0.00 0.00 4.00
793 794 4.079443 TGGAGGGGAACTTTTGGTATATGG 60.079 45.833 0.00 0.00 0.00 2.74
794 795 5.124036 TGGAGGGGAACTTTTGGTATATG 57.876 43.478 0.00 0.00 0.00 1.78
795 796 4.386424 GCTGGAGGGGAACTTTTGGTATAT 60.386 45.833 0.00 0.00 0.00 0.86
796 797 3.053917 GCTGGAGGGGAACTTTTGGTATA 60.054 47.826 0.00 0.00 0.00 1.47
797 798 2.291605 GCTGGAGGGGAACTTTTGGTAT 60.292 50.000 0.00 0.00 0.00 2.73
798 799 1.074889 GCTGGAGGGGAACTTTTGGTA 59.925 52.381 0.00 0.00 0.00 3.25
799 800 0.178961 GCTGGAGGGGAACTTTTGGT 60.179 55.000 0.00 0.00 0.00 3.67
800 801 1.244019 CGCTGGAGGGGAACTTTTGG 61.244 60.000 0.00 0.00 0.00 3.28
801 802 0.537371 ACGCTGGAGGGGAACTTTTG 60.537 55.000 0.00 0.00 0.00 2.44
802 803 0.185175 AACGCTGGAGGGGAACTTTT 59.815 50.000 0.00 0.00 0.00 2.27
803 804 0.537371 CAACGCTGGAGGGGAACTTT 60.537 55.000 0.00 0.00 0.00 2.66
804 805 1.073199 CAACGCTGGAGGGGAACTT 59.927 57.895 0.00 0.00 0.00 2.66
805 806 2.750350 CAACGCTGGAGGGGAACT 59.250 61.111 0.00 0.00 0.00 3.01
806 807 2.359975 CCAACGCTGGAGGGGAAC 60.360 66.667 0.00 0.00 46.92 3.62
814 815 1.040646 TATAGAGGCTCCAACGCTGG 58.959 55.000 11.71 0.00 45.08 4.85
904 908 2.252855 GTAGCTCGAGCCCGATCG 59.747 66.667 32.94 8.51 44.62 3.69
905 909 1.528292 ATGGTAGCTCGAGCCCGATC 61.528 60.000 32.94 19.35 44.62 3.69
932 940 3.367806 CGCTCCAATTCTCACTCTCTTGA 60.368 47.826 0.00 0.00 0.00 3.02
933 941 2.928757 CGCTCCAATTCTCACTCTCTTG 59.071 50.000 0.00 0.00 0.00 3.02
934 942 2.564947 ACGCTCCAATTCTCACTCTCTT 59.435 45.455 0.00 0.00 0.00 2.85
935 943 2.094286 CACGCTCCAATTCTCACTCTCT 60.094 50.000 0.00 0.00 0.00 3.10
936 944 2.266554 CACGCTCCAATTCTCACTCTC 58.733 52.381 0.00 0.00 0.00 3.20
937 945 1.066573 CCACGCTCCAATTCTCACTCT 60.067 52.381 0.00 0.00 0.00 3.24
938 946 1.066858 TCCACGCTCCAATTCTCACTC 60.067 52.381 0.00 0.00 0.00 3.51
939 947 0.976641 TCCACGCTCCAATTCTCACT 59.023 50.000 0.00 0.00 0.00 3.41
940 948 1.066858 TCTCCACGCTCCAATTCTCAC 60.067 52.381 0.00 0.00 0.00 3.51
941 949 1.266178 TCTCCACGCTCCAATTCTCA 58.734 50.000 0.00 0.00 0.00 3.27
946 954 2.859165 TTTCTTCTCCACGCTCCAAT 57.141 45.000 0.00 0.00 0.00 3.16
948 956 1.878102 GCTTTTCTTCTCCACGCTCCA 60.878 52.381 0.00 0.00 0.00 3.86
949 957 0.799393 GCTTTTCTTCTCCACGCTCC 59.201 55.000 0.00 0.00 0.00 4.70
953 961 1.457303 CGAGTGCTTTTCTTCTCCACG 59.543 52.381 0.00 0.00 0.00 4.94
955 963 1.202639 TGCGAGTGCTTTTCTTCTCCA 60.203 47.619 0.00 0.00 43.34 3.86
1101 1132 2.185350 CTCATCCCGCGCTTGAGT 59.815 61.111 17.74 0.00 33.72 3.41
1219 2268 3.475774 GGCGTGTAGTCGGCGTTG 61.476 66.667 6.85 0.00 45.25 4.10
1275 2424 4.281525 ACAAATTTGTACGTGTGGTGTC 57.718 40.909 22.10 0.00 40.16 3.67
1317 2466 4.101448 ACTCCCCTGCGCATGACC 62.101 66.667 12.24 0.00 0.00 4.02
1333 5068 3.084039 TGATTGTCATCTTTGGCCTCAC 58.916 45.455 3.32 0.00 0.00 3.51
1418 5156 1.570857 TTGATGGACCAGGGCGGATT 61.571 55.000 0.00 0.00 38.63 3.01
1426 5164 3.005472 GCATGAATGGATTGATGGACCAG 59.995 47.826 0.00 0.00 37.12 4.00
1468 5214 2.494059 ACCACATGTCAGTAACAGCAC 58.506 47.619 0.00 0.00 42.37 4.40
1500 5281 0.539438 CACAGGCCTGCCAGGTAAAA 60.539 55.000 33.06 0.00 37.80 1.52
1501 5282 1.074775 CACAGGCCTGCCAGGTAAA 59.925 57.895 33.06 0.00 37.80 2.01
2095 5891 2.654912 GAAGGCCGTCACGAACACG 61.655 63.158 14.36 0.00 36.99 4.49
2169 5965 1.003759 CGTACCTTCCGAGAGTGATCG 60.004 57.143 0.00 0.00 42.36 3.69
2277 6151 5.276270 CACCAATCACACTGAAAACAGAAG 58.724 41.667 0.00 0.00 0.00 2.85
2889 6790 4.019141 ACCCAAGTTCCAAATATCCACGTA 60.019 41.667 0.00 0.00 0.00 3.57
3085 7010 8.124199 GGGCAAAAACAAATGCATAATCAATAG 58.876 33.333 0.00 0.00 44.32 1.73
3094 7854 3.488778 TCTGGGCAAAAACAAATGCAT 57.511 38.095 0.00 0.00 44.32 3.96
3236 8973 1.492764 AGTATAACCGACACAGGGGG 58.507 55.000 0.00 0.00 35.02 5.40
3329 9077 3.125316 CCGACCTTTATGCTCACTTTCAC 59.875 47.826 0.00 0.00 0.00 3.18
3349 9097 1.068083 CCCTCCACATCGACATCCG 59.932 63.158 0.00 0.00 40.25 4.18
3375 9123 6.267496 AGAAAATTTTCAGTTATGGACGGG 57.733 37.500 28.00 0.00 39.61 5.28
3442 9190 4.446371 AGACAGCCATGTTTATGCTAGTC 58.554 43.478 11.65 11.65 40.68 2.59
3447 10073 3.928375 CCAAAAGACAGCCATGTTTATGC 59.072 43.478 0.00 0.00 40.68 3.14
3476 10102 2.522185 TCTTACCTCCGTTGCACTACT 58.478 47.619 0.00 0.00 0.00 2.57
3499 12625 5.510430 GTTCCCATTCTTACCTTCATTCCT 58.490 41.667 0.00 0.00 0.00 3.36
3500 12626 4.335594 CGTTCCCATTCTTACCTTCATTCC 59.664 45.833 0.00 0.00 0.00 3.01
3501 12627 4.335594 CCGTTCCCATTCTTACCTTCATTC 59.664 45.833 0.00 0.00 0.00 2.67
3502 12628 4.270008 CCGTTCCCATTCTTACCTTCATT 58.730 43.478 0.00 0.00 0.00 2.57
3503 12629 3.371595 CCCGTTCCCATTCTTACCTTCAT 60.372 47.826 0.00 0.00 0.00 2.57
3504 12630 2.026636 CCCGTTCCCATTCTTACCTTCA 60.027 50.000 0.00 0.00 0.00 3.02
3505 12631 2.640184 CCCGTTCCCATTCTTACCTTC 58.360 52.381 0.00 0.00 0.00 3.46
3506 12632 1.340697 GCCCGTTCCCATTCTTACCTT 60.341 52.381 0.00 0.00 0.00 3.50
3507 12633 0.255033 GCCCGTTCCCATTCTTACCT 59.745 55.000 0.00 0.00 0.00 3.08
3508 12634 0.255033 AGCCCGTTCCCATTCTTACC 59.745 55.000 0.00 0.00 0.00 2.85
3509 12635 1.065709 TCAGCCCGTTCCCATTCTTAC 60.066 52.381 0.00 0.00 0.00 2.34
3510 12636 1.065709 GTCAGCCCGTTCCCATTCTTA 60.066 52.381 0.00 0.00 0.00 2.10
3511 12637 0.322546 GTCAGCCCGTTCCCATTCTT 60.323 55.000 0.00 0.00 0.00 2.52
3512 12638 1.299976 GTCAGCCCGTTCCCATTCT 59.700 57.895 0.00 0.00 0.00 2.40
3513 12639 2.106683 CGTCAGCCCGTTCCCATTC 61.107 63.158 0.00 0.00 0.00 2.67
3514 12640 2.046314 CGTCAGCCCGTTCCCATT 60.046 61.111 0.00 0.00 0.00 3.16
3515 12641 4.096003 CCGTCAGCCCGTTCCCAT 62.096 66.667 0.00 0.00 0.00 4.00
3517 12643 3.366739 CTACCGTCAGCCCGTTCCC 62.367 68.421 0.00 0.00 0.00 3.97
3518 12644 2.183555 CTACCGTCAGCCCGTTCC 59.816 66.667 0.00 0.00 0.00 3.62
3519 12645 2.508663 GCTACCGTCAGCCCGTTC 60.509 66.667 0.00 0.00 35.40 3.95
3525 12651 1.376609 CCCAAATGGCTACCGTCAGC 61.377 60.000 0.00 0.00 41.02 4.26
3526 12652 0.251916 TCCCAAATGGCTACCGTCAG 59.748 55.000 0.00 0.00 0.00 3.51
3527 12653 0.035820 GTCCCAAATGGCTACCGTCA 60.036 55.000 0.00 0.00 0.00 4.35
3528 12654 0.035820 TGTCCCAAATGGCTACCGTC 60.036 55.000 0.00 0.00 0.00 4.79
3529 12655 0.623723 ATGTCCCAAATGGCTACCGT 59.376 50.000 0.00 0.00 0.00 4.83
3530 12656 1.762708 AATGTCCCAAATGGCTACCG 58.237 50.000 0.00 0.00 0.00 4.02
3531 12657 2.623416 GCTAATGTCCCAAATGGCTACC 59.377 50.000 0.00 0.00 0.00 3.18
3532 12658 2.623416 GGCTAATGTCCCAAATGGCTAC 59.377 50.000 0.00 0.00 0.00 3.58
3533 12659 2.424234 GGGCTAATGTCCCAAATGGCTA 60.424 50.000 0.00 0.00 43.37 3.93
3534 12660 1.689258 GGGCTAATGTCCCAAATGGCT 60.689 52.381 0.00 0.00 43.37 4.75
3535 12661 0.752658 GGGCTAATGTCCCAAATGGC 59.247 55.000 0.00 0.00 43.37 4.40
3536 12662 1.032014 CGGGCTAATGTCCCAAATGG 58.968 55.000 0.00 0.00 44.11 3.16
3537 12663 1.032014 CCGGGCTAATGTCCCAAATG 58.968 55.000 0.00 0.00 44.11 2.32
3538 12664 0.755327 GCCGGGCTAATGTCCCAAAT 60.755 55.000 12.87 0.00 44.11 2.32
3539 12665 1.379309 GCCGGGCTAATGTCCCAAA 60.379 57.895 12.87 0.00 44.11 3.28
3540 12666 2.274104 GCCGGGCTAATGTCCCAA 59.726 61.111 12.87 0.00 44.11 4.12
3541 12667 3.804329 GGCCGGGCTAATGTCCCA 61.804 66.667 22.87 0.00 44.11 4.37
3542 12668 4.581093 GGGCCGGGCTAATGTCCC 62.581 72.222 28.80 11.10 40.43 4.46
3543 12669 2.847366 TTTGGGCCGGGCTAATGTCC 62.847 60.000 27.20 10.87 33.83 4.02
3544 12670 0.968393 TTTTGGGCCGGGCTAATGTC 60.968 55.000 27.20 10.22 0.00 3.06
3545 12671 0.543174 TTTTTGGGCCGGGCTAATGT 60.543 50.000 27.20 0.00 0.00 2.71
3546 12672 2.281830 TTTTTGGGCCGGGCTAATG 58.718 52.632 27.20 0.00 0.00 1.90
3547 12673 4.876752 TTTTTGGGCCGGGCTAAT 57.123 50.000 27.20 0.00 0.00 1.73
3561 12687 4.154942 AGATCCACTGGCTTCACATTTTT 58.845 39.130 0.00 0.00 0.00 1.94
3562 12688 3.771216 AGATCCACTGGCTTCACATTTT 58.229 40.909 0.00 0.00 0.00 1.82
3563 12689 3.446442 AGATCCACTGGCTTCACATTT 57.554 42.857 0.00 0.00 0.00 2.32
3564 12690 3.446442 AAGATCCACTGGCTTCACATT 57.554 42.857 0.00 0.00 0.00 2.71
3565 12691 3.446442 AAAGATCCACTGGCTTCACAT 57.554 42.857 0.00 0.00 0.00 3.21
3566 12692 2.886523 CAAAAGATCCACTGGCTTCACA 59.113 45.455 0.00 0.00 0.00 3.58
3567 12693 2.229784 CCAAAAGATCCACTGGCTTCAC 59.770 50.000 0.00 0.00 0.00 3.18
3568 12694 2.517959 CCAAAAGATCCACTGGCTTCA 58.482 47.619 0.00 0.00 0.00 3.02
3569 12695 1.821136 CCCAAAAGATCCACTGGCTTC 59.179 52.381 0.00 0.00 0.00 3.86
3570 12696 1.147817 ACCCAAAAGATCCACTGGCTT 59.852 47.619 0.00 0.00 0.00 4.35
3571 12697 0.779997 ACCCAAAAGATCCACTGGCT 59.220 50.000 0.00 0.00 0.00 4.75
3572 12698 1.273327 CAACCCAAAAGATCCACTGGC 59.727 52.381 0.00 0.00 0.00 4.85
3573 12699 2.558359 GTCAACCCAAAAGATCCACTGG 59.442 50.000 0.00 0.00 0.00 4.00
3574 12700 3.490348 AGTCAACCCAAAAGATCCACTG 58.510 45.455 0.00 0.00 0.00 3.66
3575 12701 3.884037 AGTCAACCCAAAAGATCCACT 57.116 42.857 0.00 0.00 0.00 4.00
3576 12702 3.058224 CGAAGTCAACCCAAAAGATCCAC 60.058 47.826 0.00 0.00 0.00 4.02
3577 12703 3.146066 CGAAGTCAACCCAAAAGATCCA 58.854 45.455 0.00 0.00 0.00 3.41
3578 12704 3.146847 ACGAAGTCAACCCAAAAGATCC 58.853 45.455 0.00 0.00 29.74 3.36
3579 12705 5.934935 TTACGAAGTCAACCCAAAAGATC 57.065 39.130 0.00 0.00 43.93 2.75
3580 12706 5.826208 ACTTTACGAAGTCAACCCAAAAGAT 59.174 36.000 0.00 0.00 42.35 2.40
3581 12707 5.187687 ACTTTACGAAGTCAACCCAAAAGA 58.812 37.500 0.00 0.00 42.35 2.52
3582 12708 5.494632 ACTTTACGAAGTCAACCCAAAAG 57.505 39.130 0.00 0.00 42.35 2.27
3583 12709 6.598850 AGTTACTTTACGAAGTCAACCCAAAA 59.401 34.615 0.00 0.00 44.75 2.44
3584 12710 6.114767 AGTTACTTTACGAAGTCAACCCAAA 58.885 36.000 0.00 0.00 44.75 3.28
3585 12711 5.673514 AGTTACTTTACGAAGTCAACCCAA 58.326 37.500 0.00 0.00 44.75 4.12
3586 12712 5.280654 AGTTACTTTACGAAGTCAACCCA 57.719 39.130 0.00 0.00 44.75 4.51
3587 12713 4.383948 CGAGTTACTTTACGAAGTCAACCC 59.616 45.833 0.00 0.00 44.75 4.11
3588 12714 4.383948 CCGAGTTACTTTACGAAGTCAACC 59.616 45.833 0.00 0.00 44.75 3.77
3589 12715 4.383948 CCCGAGTTACTTTACGAAGTCAAC 59.616 45.833 0.00 0.00 44.75 3.18
3590 12716 4.549458 CCCGAGTTACTTTACGAAGTCAA 58.451 43.478 0.00 0.00 44.75 3.18
3591 12717 3.612479 GCCCGAGTTACTTTACGAAGTCA 60.612 47.826 0.00 0.00 44.75 3.41
3592 12718 2.919859 GCCCGAGTTACTTTACGAAGTC 59.080 50.000 0.00 0.00 44.75 3.01
3594 12720 3.227810 AGCCCGAGTTACTTTACGAAG 57.772 47.619 0.00 0.00 38.87 3.79
3595 12721 4.458989 TCTTAGCCCGAGTTACTTTACGAA 59.541 41.667 0.00 0.00 0.00 3.85
3596 12722 4.009675 TCTTAGCCCGAGTTACTTTACGA 58.990 43.478 0.00 0.00 0.00 3.43
3597 12723 4.361451 TCTTAGCCCGAGTTACTTTACG 57.639 45.455 0.00 0.00 0.00 3.18
3598 12724 5.522824 CCATTCTTAGCCCGAGTTACTTTAC 59.477 44.000 0.00 0.00 0.00 2.01
3599 12725 5.395990 CCCATTCTTAGCCCGAGTTACTTTA 60.396 44.000 0.00 0.00 0.00 1.85
3600 12726 4.514401 CCATTCTTAGCCCGAGTTACTTT 58.486 43.478 0.00 0.00 0.00 2.66
3601 12727 3.118371 CCCATTCTTAGCCCGAGTTACTT 60.118 47.826 0.00 0.00 0.00 2.24
3602 12728 2.434702 CCCATTCTTAGCCCGAGTTACT 59.565 50.000 0.00 0.00 0.00 2.24
3603 12729 2.433239 TCCCATTCTTAGCCCGAGTTAC 59.567 50.000 0.00 0.00 0.00 2.50
3604 12730 2.754465 TCCCATTCTTAGCCCGAGTTA 58.246 47.619 0.00 0.00 0.00 2.24
3605 12731 1.580059 TCCCATTCTTAGCCCGAGTT 58.420 50.000 0.00 0.00 0.00 3.01
3606 12732 1.209747 GTTCCCATTCTTAGCCCGAGT 59.790 52.381 0.00 0.00 0.00 4.18
3607 12733 1.209504 TGTTCCCATTCTTAGCCCGAG 59.790 52.381 0.00 0.00 0.00 4.63
3608 12734 1.209504 CTGTTCCCATTCTTAGCCCGA 59.790 52.381 0.00 0.00 0.00 5.14
3609 12735 1.668419 CTGTTCCCATTCTTAGCCCG 58.332 55.000 0.00 0.00 0.00 6.13
3610 12736 2.024306 GCCTGTTCCCATTCTTAGCCC 61.024 57.143 0.00 0.00 0.00 5.19
3611 12737 1.064389 AGCCTGTTCCCATTCTTAGCC 60.064 52.381 0.00 0.00 0.00 3.93
3612 12738 2.019984 CAGCCTGTTCCCATTCTTAGC 58.980 52.381 0.00 0.00 0.00 3.09
3613 12739 3.274288 GTCAGCCTGTTCCCATTCTTAG 58.726 50.000 0.00 0.00 0.00 2.18
3614 12740 2.354704 CGTCAGCCTGTTCCCATTCTTA 60.355 50.000 0.00 0.00 0.00 2.10
3615 12741 1.611673 CGTCAGCCTGTTCCCATTCTT 60.612 52.381 0.00 0.00 0.00 2.52
3616 12742 0.036010 CGTCAGCCTGTTCCCATTCT 60.036 55.000 0.00 0.00 0.00 2.40
3617 12743 1.026718 CCGTCAGCCTGTTCCCATTC 61.027 60.000 0.00 0.00 0.00 2.67
3618 12744 1.002134 CCGTCAGCCTGTTCCCATT 60.002 57.895 0.00 0.00 0.00 3.16
3619 12745 0.907704 TACCGTCAGCCTGTTCCCAT 60.908 55.000 0.00 0.00 0.00 4.00
3620 12746 1.534476 TACCGTCAGCCTGTTCCCA 60.534 57.895 0.00 0.00 0.00 4.37
3659 12792 2.837591 ACTGGCTTGAAAGTTTTTGGGT 59.162 40.909 0.00 0.00 0.00 4.51
3660 12793 3.197265 CACTGGCTTGAAAGTTTTTGGG 58.803 45.455 0.00 0.00 0.00 4.12
3663 12796 4.651045 AGATCCACTGGCTTGAAAGTTTTT 59.349 37.500 0.00 0.00 0.00 1.94
3741 12875 2.491675 AAAAATCTGGGTCGGTCCTC 57.508 50.000 0.00 0.00 36.25 3.71
3760 12894 6.493189 TGGCATATTACAACCAGAGACATA 57.507 37.500 0.00 0.00 0.00 2.29
3761 12895 5.372343 TGGCATATTACAACCAGAGACAT 57.628 39.130 0.00 0.00 0.00 3.06
3786 12920 1.268352 TGCAAAGGTATGTGCCGTTTC 59.732 47.619 0.00 0.00 40.14 2.78
3787 12921 1.000717 GTGCAAAGGTATGTGCCGTTT 60.001 47.619 0.00 0.00 40.14 3.60
3790 12924 0.810648 ATGTGCAAAGGTATGTGCCG 59.189 50.000 0.00 0.00 40.14 5.69
3791 12925 3.317603 AAATGTGCAAAGGTATGTGCC 57.682 42.857 0.00 0.00 40.14 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.