Multiple sequence alignment - TraesCS6D01G306600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G306600 chr6D 100.000 4582 0 0 1 4582 417753078 417748497 0.000000e+00 8462.0
1 TraesCS6D01G306600 chr6D 90.166 1566 120 16 978 2528 417775826 417777372 0.000000e+00 2008.0
2 TraesCS6D01G306600 chr6D 94.913 747 37 1 3837 4582 56884790 56884044 0.000000e+00 1168.0
3 TraesCS6D01G306600 chr6D 93.708 747 45 2 3837 4582 457597621 457596876 0.000000e+00 1118.0
4 TraesCS6D01G306600 chr6D 93.277 238 14 1 3603 3838 417760782 417761019 2.620000e-92 350.0
5 TraesCS6D01G306600 chr6D 87.943 141 14 1 2699 2836 417777375 417777515 3.670000e-36 163.0
6 TraesCS6D01G306600 chr6A 94.374 2133 92 10 887 3014 560192986 560190877 0.000000e+00 3249.0
7 TraesCS6D01G306600 chr6A 88.963 1504 119 14 986 2472 560444240 560445713 0.000000e+00 1814.0
8 TraesCS6D01G306600 chr6A 96.012 652 23 2 3189 3838 560135123 560134473 0.000000e+00 1057.0
9 TraesCS6D01G306600 chr6A 83.521 534 73 10 2 532 560197091 560196570 6.890000e-133 484.0
10 TraesCS6D01G306600 chr6A 94.059 101 6 0 796 896 560195996 560195896 2.210000e-33 154.0
11 TraesCS6D01G306600 chr6A 91.667 48 4 0 2883 2930 390618165 390618212 2.960000e-07 67.6
12 TraesCS6D01G306600 chr6B 92.263 1732 88 16 848 2548 626643769 626645485 0.000000e+00 2414.0
13 TraesCS6D01G306600 chr6B 92.844 1118 79 1 1337 2453 626489330 626488213 0.000000e+00 1620.0
14 TraesCS6D01G306600 chr6B 93.173 747 45 2 3837 4582 130485154 130485895 0.000000e+00 1092.0
15 TraesCS6D01G306600 chr6B 90.239 461 36 5 3380 3838 626595408 626594955 1.100000e-165 593.0
16 TraesCS6D01G306600 chr6B 90.000 340 31 1 982 1318 626525234 626524895 1.960000e-118 436.0
17 TraesCS6D01G306600 chr6B 92.228 193 13 2 585 776 626643576 626643767 5.840000e-69 272.0
18 TraesCS6D01G306600 chr6B 85.169 236 26 5 2781 3013 626645587 626645816 2.760000e-57 233.0
19 TraesCS6D01G306600 chr6B 96.739 92 3 0 3189 3280 626595821 626595730 2.210000e-33 154.0
20 TraesCS6D01G306600 chr3D 87.700 1439 164 5 1008 2435 17343126 17341690 0.000000e+00 1664.0
21 TraesCS6D01G306600 chr3D 85.094 1429 202 6 1008 2435 17698286 17699704 0.000000e+00 1448.0
22 TraesCS6D01G306600 chr3D 95.850 747 30 1 3837 4582 18656300 18655554 0.000000e+00 1206.0
23 TraesCS6D01G306600 chr3D 91.667 48 4 0 2883 2930 351025752 351025799 2.960000e-07 67.6
24 TraesCS6D01G306600 chr3D 97.143 35 1 0 539 573 614989563 614989529 4.950000e-05 60.2
25 TraesCS6D01G306600 chr3D 96.875 32 1 0 544 575 611719044 611719013 2.000000e-03 54.7
26 TraesCS6D01G306600 chr2D 95.374 735 33 1 3837 4570 490664004 490664738 0.000000e+00 1168.0
27 TraesCS6D01G306600 chr1D 94.110 747 43 1 3837 4582 31366783 31367529 0.000000e+00 1134.0
28 TraesCS6D01G306600 chr4B 93.842 747 45 1 3837 4582 17438270 17437524 0.000000e+00 1123.0
29 TraesCS6D01G306600 chr5D 93.145 744 50 1 3840 4582 239604931 239604188 0.000000e+00 1090.0
30 TraesCS6D01G306600 chr5D 92.236 747 55 3 3837 4582 439532308 439531564 0.000000e+00 1055.0
31 TraesCS6D01G306600 chr5D 100.000 31 0 0 545 575 52740826 52740856 1.780000e-04 58.4
32 TraesCS6D01G306600 chr5D 100.000 31 0 0 545 575 52745139 52745109 1.780000e-04 58.4
33 TraesCS6D01G306600 chr5D 97.059 34 1 0 542 575 549650083 549650116 1.780000e-04 58.4
34 TraesCS6D01G306600 chr3A 84.446 1093 156 10 1008 2096 18818921 18820003 0.000000e+00 1064.0
35 TraesCS6D01G306600 chr3A 84.446 1093 156 10 1008 2096 19266059 19264977 0.000000e+00 1064.0
36 TraesCS6D01G306600 chr3A 83.511 752 100 13 1695 2438 19269652 19268917 0.000000e+00 680.0
37 TraesCS6D01G306600 chr3A 100.000 30 0 0 546 575 441816395 441816424 6.400000e-04 56.5
38 TraesCS6D01G306600 chr3B 88.684 813 89 2 1626 2435 24902082 24901270 0.000000e+00 989.0
39 TraesCS6D01G306600 chr5B 93.103 174 11 1 3013 3185 669224182 669224009 2.120000e-63 254.0
40 TraesCS6D01G306600 chr5B 91.667 48 4 0 2883 2930 324712382 324712429 2.960000e-07 67.6
41 TraesCS6D01G306600 chr5A 92.899 169 11 1 3018 3185 277332383 277332215 1.270000e-60 244.0
42 TraesCS6D01G306600 chr5A 89.583 48 5 0 2883 2930 224161501 224161548 1.380000e-05 62.1
43 TraesCS6D01G306600 chr2A 93.913 115 5 2 2593 2706 530754877 530754764 6.090000e-39 172.0
44 TraesCS6D01G306600 chr2B 92.105 114 8 1 2586 2698 699077695 699077808 4.740000e-35 159.0
45 TraesCS6D01G306600 chr4D 91.667 48 4 0 2883 2930 401029511 401029558 2.960000e-07 67.6
46 TraesCS6D01G306600 chr4D 97.143 35 1 0 2895 2929 447037335 447037301 4.950000e-05 60.2
47 TraesCS6D01G306600 chr1A 91.489 47 4 0 2883 2929 135829035 135829081 1.060000e-06 65.8
48 TraesCS6D01G306600 chr7A 100.000 30 0 0 546 575 307375063 307375092 6.400000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G306600 chr6D 417748497 417753078 4581 True 8462.000000 8462 100.000000 1 4582 1 chr6D.!!$R2 4581
1 TraesCS6D01G306600 chr6D 56884044 56884790 746 True 1168.000000 1168 94.913000 3837 4582 1 chr6D.!!$R1 745
2 TraesCS6D01G306600 chr6D 457596876 457597621 745 True 1118.000000 1118 93.708000 3837 4582 1 chr6D.!!$R3 745
3 TraesCS6D01G306600 chr6D 417775826 417777515 1689 False 1085.500000 2008 89.054500 978 2836 2 chr6D.!!$F2 1858
4 TraesCS6D01G306600 chr6A 560444240 560445713 1473 False 1814.000000 1814 88.963000 986 2472 1 chr6A.!!$F2 1486
5 TraesCS6D01G306600 chr6A 560190877 560197091 6214 True 1295.666667 3249 90.651333 2 3014 3 chr6A.!!$R2 3012
6 TraesCS6D01G306600 chr6A 560134473 560135123 650 True 1057.000000 1057 96.012000 3189 3838 1 chr6A.!!$R1 649
7 TraesCS6D01G306600 chr6B 626488213 626489330 1117 True 1620.000000 1620 92.844000 1337 2453 1 chr6B.!!$R1 1116
8 TraesCS6D01G306600 chr6B 130485154 130485895 741 False 1092.000000 1092 93.173000 3837 4582 1 chr6B.!!$F1 745
9 TraesCS6D01G306600 chr6B 626643576 626645816 2240 False 973.000000 2414 89.886667 585 3013 3 chr6B.!!$F2 2428
10 TraesCS6D01G306600 chr6B 626594955 626595821 866 True 373.500000 593 93.489000 3189 3838 2 chr6B.!!$R3 649
11 TraesCS6D01G306600 chr3D 17341690 17343126 1436 True 1664.000000 1664 87.700000 1008 2435 1 chr3D.!!$R1 1427
12 TraesCS6D01G306600 chr3D 17698286 17699704 1418 False 1448.000000 1448 85.094000 1008 2435 1 chr3D.!!$F1 1427
13 TraesCS6D01G306600 chr3D 18655554 18656300 746 True 1206.000000 1206 95.850000 3837 4582 1 chr3D.!!$R2 745
14 TraesCS6D01G306600 chr2D 490664004 490664738 734 False 1168.000000 1168 95.374000 3837 4570 1 chr2D.!!$F1 733
15 TraesCS6D01G306600 chr1D 31366783 31367529 746 False 1134.000000 1134 94.110000 3837 4582 1 chr1D.!!$F1 745
16 TraesCS6D01G306600 chr4B 17437524 17438270 746 True 1123.000000 1123 93.842000 3837 4582 1 chr4B.!!$R1 745
17 TraesCS6D01G306600 chr5D 239604188 239604931 743 True 1090.000000 1090 93.145000 3840 4582 1 chr5D.!!$R2 742
18 TraesCS6D01G306600 chr5D 439531564 439532308 744 True 1055.000000 1055 92.236000 3837 4582 1 chr5D.!!$R3 745
19 TraesCS6D01G306600 chr3A 18818921 18820003 1082 False 1064.000000 1064 84.446000 1008 2096 1 chr3A.!!$F1 1088
20 TraesCS6D01G306600 chr3A 19264977 19269652 4675 True 872.000000 1064 83.978500 1008 2438 2 chr3A.!!$R1 1430
21 TraesCS6D01G306600 chr3B 24901270 24902082 812 True 989.000000 989 88.684000 1626 2435 1 chr3B.!!$R1 809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
327 328 0.035343 GGCAGGGGGTTGACTAGTTC 60.035 60.0 0.00 0.0 0.00 3.01 F
347 348 0.040425 AAAACCGTCGAGCAACATGC 60.040 50.0 0.00 0.0 45.46 4.06 F
1148 4484 0.036732 AAGCAGGTCATCGCCTTCAA 59.963 50.0 0.00 0.0 36.58 2.69 F
3026 6467 0.383231 TTAGTAAGGCCGCGACTAGC 59.617 55.0 8.23 0.9 43.95 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1136 4472 0.669318 GACGGTGTTGAAGGCGATGA 60.669 55.000 0.0 0.0 0.00 2.92 R
1990 5373 2.124736 CATGAACCCGTCCGGCAT 60.125 61.111 0.0 0.0 33.26 4.40 R
3040 6481 0.037326 TGCTCTGAAACGCTACCCAG 60.037 55.000 0.0 0.0 0.00 4.45 R
4475 8141 0.107752 CCTCCTCCTCTGCTTTCAGC 60.108 60.000 0.0 0.0 42.82 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 5.378230 AAAATCTGACCATCTGAGGCATA 57.622 39.130 0.00 0.00 0.00 3.14
41 42 4.141158 TCTGACCATCTGAGGCATACTCTA 60.141 45.833 0.00 0.00 46.72 2.43
62 63 1.605710 CAGTGGTCTCTGCACAAAAGG 59.394 52.381 0.00 0.00 0.00 3.11
65 66 1.771854 TGGTCTCTGCACAAAAGGGTA 59.228 47.619 0.00 0.00 0.00 3.69
67 68 2.224548 GGTCTCTGCACAAAAGGGTACT 60.225 50.000 0.00 0.00 0.00 2.73
88 89 0.311165 CGATAGCCGACACCGAAGAT 59.689 55.000 0.00 0.00 41.76 2.40
99 100 2.299013 ACACCGAAGATGCAGTGAAGTA 59.701 45.455 8.35 0.00 0.00 2.24
186 187 1.705873 AGAGGTTGAAGACGGTGACT 58.294 50.000 0.00 0.00 0.00 3.41
188 189 0.393077 AGGTTGAAGACGGTGACTGG 59.607 55.000 0.00 0.00 0.00 4.00
189 190 0.602905 GGTTGAAGACGGTGACTGGG 60.603 60.000 0.00 0.00 0.00 4.45
253 254 3.562141 CACCTAGTCGACGATTCAGATCT 59.438 47.826 10.46 0.00 0.00 2.75
301 302 6.707440 TTATTGATTTCATGTATTGCGGGT 57.293 33.333 0.00 0.00 0.00 5.28
302 303 4.630894 TTGATTTCATGTATTGCGGGTC 57.369 40.909 0.00 0.00 0.00 4.46
320 321 3.579302 CACCAGGCAGGGGGTTGA 61.579 66.667 0.00 0.00 43.89 3.18
322 323 3.260100 CCAGGCAGGGGGTTGACT 61.260 66.667 0.00 0.00 36.69 3.41
327 328 0.035343 GGCAGGGGGTTGACTAGTTC 60.035 60.000 0.00 0.00 0.00 3.01
328 329 0.690762 GCAGGGGGTTGACTAGTTCA 59.309 55.000 0.00 0.00 0.00 3.18
330 331 2.488347 GCAGGGGGTTGACTAGTTCAAA 60.488 50.000 0.00 0.00 46.09 2.69
331 332 3.827722 CAGGGGGTTGACTAGTTCAAAA 58.172 45.455 0.00 0.00 46.09 2.44
332 333 3.568430 CAGGGGGTTGACTAGTTCAAAAC 59.432 47.826 0.00 0.23 46.09 2.43
338 339 3.713858 TGACTAGTTCAAAACCGTCGA 57.286 42.857 0.00 0.00 36.00 4.20
339 340 3.635331 TGACTAGTTCAAAACCGTCGAG 58.365 45.455 0.00 0.00 36.00 4.04
340 341 2.401351 ACTAGTTCAAAACCGTCGAGC 58.599 47.619 0.00 0.00 0.00 5.03
342 343 1.658994 AGTTCAAAACCGTCGAGCAA 58.341 45.000 0.00 0.00 0.00 3.91
344 345 1.062880 GTTCAAAACCGTCGAGCAACA 59.937 47.619 0.00 0.00 0.00 3.33
345 346 1.588674 TCAAAACCGTCGAGCAACAT 58.411 45.000 0.00 0.00 0.00 2.71
346 347 1.262950 TCAAAACCGTCGAGCAACATG 59.737 47.619 0.00 0.00 0.00 3.21
347 348 0.040425 AAAACCGTCGAGCAACATGC 60.040 50.000 0.00 0.00 45.46 4.06
358 359 1.621107 GCAACATGCATGGTCTTTCG 58.379 50.000 29.41 12.80 44.26 3.46
359 360 1.621107 CAACATGCATGGTCTTTCGC 58.379 50.000 29.41 0.00 0.00 4.70
367 368 1.325640 CATGGTCTTTCGCTGATGACG 59.674 52.381 0.00 0.00 0.00 4.35
370 371 0.368227 GTCTTTCGCTGATGACGCTG 59.632 55.000 0.00 0.00 0.00 5.18
384 385 0.392998 ACGCTGCCGAGGAATTCAAT 60.393 50.000 7.93 0.00 38.29 2.57
389 390 1.134098 TGCCGAGGAATTCAATCCCTC 60.134 52.381 7.93 0.00 40.59 4.30
390 391 1.815795 GCCGAGGAATTCAATCCCTCC 60.816 57.143 7.93 0.00 42.60 4.30
398 399 4.140924 GGAATTCAATCCCTCCCCACTAAT 60.141 45.833 7.93 0.00 33.05 1.73
401 402 3.747852 TCAATCCCTCCCCACTAATCTT 58.252 45.455 0.00 0.00 0.00 2.40
408 409 4.287326 CCCTCCCCACTAATCTTAAGGATC 59.713 50.000 1.85 0.00 32.76 3.36
416 417 6.410540 CACTAATCTTAAGGATCCATAGGCC 58.589 44.000 15.82 0.00 32.76 5.19
417 418 6.013379 CACTAATCTTAAGGATCCATAGGCCA 60.013 42.308 15.82 0.00 32.76 5.36
418 419 6.737608 ACTAATCTTAAGGATCCATAGGCCAT 59.262 38.462 15.82 0.00 32.76 4.40
430 431 1.971505 TAGGCCATGGCGTTCCTGAG 61.972 60.000 34.72 0.00 43.06 3.35
433 434 1.372087 GCCATGGCGTTCCTGAGAAG 61.372 60.000 23.48 0.00 30.91 2.85
436 437 1.134280 CATGGCGTTCCTGAGAAGGAT 60.134 52.381 0.00 0.00 39.70 3.24
453 454 6.122277 AGAAGGATCAGATCGCCAAATAAAA 58.878 36.000 4.23 0.00 0.00 1.52
457 458 4.811555 TCAGATCGCCAAATAAAATCCG 57.188 40.909 0.00 0.00 0.00 4.18
458 459 3.003275 TCAGATCGCCAAATAAAATCCGC 59.997 43.478 0.00 0.00 0.00 5.54
471 472 2.702592 AATCCGCGGAGGTCATTTTA 57.297 45.000 33.87 6.09 41.99 1.52
476 477 1.388547 GCGGAGGTCATTTTATGCCA 58.611 50.000 0.00 0.00 0.00 4.92
477 478 1.956477 GCGGAGGTCATTTTATGCCAT 59.044 47.619 0.00 0.00 0.00 4.40
478 479 2.030805 GCGGAGGTCATTTTATGCCATC 60.031 50.000 0.00 0.00 0.00 3.51
479 480 3.480470 CGGAGGTCATTTTATGCCATCT 58.520 45.455 0.00 0.00 0.00 2.90
482 483 5.707298 CGGAGGTCATTTTATGCCATCTATT 59.293 40.000 0.00 0.00 0.00 1.73
483 484 6.128172 CGGAGGTCATTTTATGCCATCTATTC 60.128 42.308 0.00 0.00 0.00 1.75
484 485 6.944862 GGAGGTCATTTTATGCCATCTATTCT 59.055 38.462 0.00 0.00 0.00 2.40
503 507 8.324306 TCTATTCTTCAAGGTCAGAACAATGAT 58.676 33.333 0.00 0.00 31.80 2.45
511 515 4.637534 AGGTCAGAACAATGATTTCATCCG 59.362 41.667 0.00 0.00 35.10 4.18
514 518 5.122239 GTCAGAACAATGATTTCATCCGTCA 59.878 40.000 0.00 0.00 35.10 4.35
536 540 4.081322 GGGAATTCGAGCCCTTTATACA 57.919 45.455 11.58 0.00 41.31 2.29
537 541 3.813724 GGGAATTCGAGCCCTTTATACAC 59.186 47.826 11.58 0.00 41.31 2.90
538 542 4.444449 GGGAATTCGAGCCCTTTATACACT 60.444 45.833 11.58 0.00 41.31 3.55
539 543 5.221581 GGGAATTCGAGCCCTTTATACACTA 60.222 44.000 11.58 0.00 41.31 2.74
540 544 6.465084 GGAATTCGAGCCCTTTATACACTAT 58.535 40.000 0.00 0.00 0.00 2.12
544 548 8.828688 ATTCGAGCCCTTTATACACTATTAAC 57.171 34.615 0.00 0.00 0.00 2.01
545 549 7.592885 TCGAGCCCTTTATACACTATTAACT 57.407 36.000 0.00 0.00 0.00 2.24
547 551 8.571336 TCGAGCCCTTTATACACTATTAACTAC 58.429 37.037 0.00 0.00 0.00 2.73
549 553 9.911138 GAGCCCTTTATACACTATTAACTACTC 57.089 37.037 0.00 0.00 0.00 2.59
551 555 8.868103 GCCCTTTATACACTATTAACTACTCCT 58.132 37.037 0.00 0.00 0.00 3.69
573 577 9.922305 CTCCTTCTGTAAAGAAATATAAAAGCG 57.078 33.333 0.00 0.00 0.00 4.68
574 578 9.444600 TCCTTCTGTAAAGAAATATAAAAGCGT 57.555 29.630 0.00 0.00 0.00 5.07
578 582 8.323140 TCTGTAAAGAAATATAAAAGCGTACGC 58.677 33.333 32.17 32.17 42.33 4.42
596 600 8.231304 GCGTACGCTATTATATTTCTTTACCA 57.769 34.615 31.95 0.00 38.26 3.25
612 616 7.191593 TCTTTACCAAGGGAGTATAAAGGAC 57.808 40.000 0.00 0.00 34.85 3.85
616 620 3.646637 CCAAGGGAGTATAAAGGACCGAT 59.353 47.826 0.00 0.00 0.00 4.18
636 640 2.126071 GCTAGCTGGTTCGTCGCA 60.126 61.111 7.70 0.00 0.00 5.10
687 691 0.995024 CCAGACTCCCTCCCAATTGT 59.005 55.000 4.43 0.00 0.00 2.71
797 802 3.730761 GGCACAGTGAAGCGGCTG 61.731 66.667 1.81 0.00 38.58 4.85
798 803 4.395583 GCACAGTGAAGCGGCTGC 62.396 66.667 10.33 10.33 43.24 5.25
845 1248 3.009723 TGAAAGATTTGGATCGCTCACC 58.990 45.455 0.00 0.00 37.37 4.02
905 4232 4.537015 CCACGAGGTTTTTCTGCTTTAAG 58.463 43.478 0.00 0.00 0.00 1.85
916 4243 7.458409 TTTTCTGCTTTAAGATTGAGATGCT 57.542 32.000 0.00 0.00 0.00 3.79
920 4247 5.494724 TGCTTTAAGATTGAGATGCTCTGT 58.505 37.500 0.00 0.00 0.00 3.41
938 4265 2.909244 CTGTGTCGTCACGAGTTCATAC 59.091 50.000 0.00 0.00 46.49 2.39
939 4266 2.551032 TGTGTCGTCACGAGTTCATACT 59.449 45.455 0.00 0.00 46.49 2.12
997 4330 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1148 4484 0.036732 AAGCAGGTCATCGCCTTCAA 59.963 50.000 0.00 0.00 36.58 2.69
1150 4486 0.955428 GCAGGTCATCGCCTTCAACA 60.955 55.000 0.00 0.00 36.58 3.33
1608 4969 3.626996 CTTGCTGTGCCGGATCCCA 62.627 63.158 5.05 0.00 0.00 4.37
1804 5165 1.153823 CTAGACAGCCAACCGGACG 60.154 63.158 9.46 0.00 0.00 4.79
1990 5373 4.717629 CGGACCTCAACGCGCTCA 62.718 66.667 5.73 0.00 0.00 4.26
2122 5507 1.002624 GGGTGGAATTCGGTGCTGA 60.003 57.895 0.00 0.00 0.00 4.26
2160 5545 2.992689 CCAATGCTGTGCTGGCCA 60.993 61.111 4.71 4.71 0.00 5.36
2307 5692 1.152715 GGAGTCCGAGGAGGGTAGG 60.153 68.421 0.00 0.00 41.52 3.18
2564 5967 6.682423 TTGTGTGCAATAATCCTACATCTG 57.318 37.500 0.00 0.00 0.00 2.90
2584 5987 4.463539 TCTGCACCATCTACGTAACCTTAA 59.536 41.667 0.00 0.00 0.00 1.85
2586 5989 5.353938 TGCACCATCTACGTAACCTTAATC 58.646 41.667 0.00 0.00 0.00 1.75
2587 5990 5.128171 TGCACCATCTACGTAACCTTAATCT 59.872 40.000 0.00 0.00 0.00 2.40
2588 5991 6.047231 GCACCATCTACGTAACCTTAATCTT 58.953 40.000 0.00 0.00 0.00 2.40
2589 5992 6.200475 GCACCATCTACGTAACCTTAATCTTC 59.800 42.308 0.00 0.00 0.00 2.87
2611 6018 4.896829 TTTTCGCGGGGTTGGGCA 62.897 61.111 6.13 0.00 0.00 5.36
2628 6035 2.643933 GCAGTGCCATTTTCTCTTCC 57.356 50.000 2.85 0.00 0.00 3.46
2639 6046 5.392811 CCATTTTCTCTTCCAATCAGAGCAC 60.393 44.000 0.00 0.00 38.17 4.40
2679 6086 6.479654 CGTAGCTTTACGTTGAATCTCTAC 57.520 41.667 0.00 1.91 38.52 2.59
2858 6299 7.272037 TGTGTCGAAGATTCATGTAGCTATA 57.728 36.000 0.00 0.00 40.67 1.31
2888 6329 4.287552 ACATACTCCTTCCGTTACCATCT 58.712 43.478 0.00 0.00 0.00 2.90
2953 6394 4.295141 TCCGTTCACAAATATCCCACTT 57.705 40.909 0.00 0.00 0.00 3.16
2957 6398 4.695455 CGTTCACAAATATCCCACTTGTCT 59.305 41.667 0.00 0.00 30.99 3.41
3017 6458 9.892130 ATATATCTAGCACATTTTAGTAAGGCC 57.108 33.333 0.00 0.00 0.00 5.19
3018 6459 4.439057 TCTAGCACATTTTAGTAAGGCCG 58.561 43.478 0.00 0.00 0.00 6.13
3019 6460 1.743394 AGCACATTTTAGTAAGGCCGC 59.257 47.619 0.00 0.00 0.00 6.53
3020 6461 1.531058 GCACATTTTAGTAAGGCCGCG 60.531 52.381 0.00 0.00 0.00 6.46
3021 6462 2.004017 CACATTTTAGTAAGGCCGCGA 58.996 47.619 8.23 0.00 0.00 5.87
3022 6463 2.004733 ACATTTTAGTAAGGCCGCGAC 58.995 47.619 8.23 0.00 0.00 5.19
3023 6464 2.277084 CATTTTAGTAAGGCCGCGACT 58.723 47.619 8.23 4.91 0.00 4.18
3024 6465 3.119029 ACATTTTAGTAAGGCCGCGACTA 60.119 43.478 8.23 3.70 0.00 2.59
3025 6466 2.857592 TTTAGTAAGGCCGCGACTAG 57.142 50.000 8.23 0.00 0.00 2.57
3026 6467 0.383231 TTAGTAAGGCCGCGACTAGC 59.617 55.000 8.23 0.90 43.95 3.42
3033 6474 4.435436 CCGCGACTAGCCAGCACA 62.435 66.667 8.23 0.00 44.76 4.57
3034 6475 3.181967 CGCGACTAGCCAGCACAC 61.182 66.667 0.00 0.00 44.76 3.82
3035 6476 3.181967 GCGACTAGCCAGCACACG 61.182 66.667 0.00 0.00 40.81 4.49
3036 6477 2.258591 CGACTAGCCAGCACACGT 59.741 61.111 0.00 0.00 0.00 4.49
3037 6478 1.372997 CGACTAGCCAGCACACGTT 60.373 57.895 0.00 0.00 0.00 3.99
3038 6479 1.617755 CGACTAGCCAGCACACGTTG 61.618 60.000 0.00 0.00 0.00 4.10
3039 6480 1.291877 GACTAGCCAGCACACGTTGG 61.292 60.000 0.00 0.00 45.88 3.77
3045 6486 4.189580 AGCACACGTTGGCTGGGT 62.190 61.111 9.75 0.00 39.30 4.51
3046 6487 2.281208 GCACACGTTGGCTGGGTA 60.281 61.111 1.09 0.00 0.00 3.69
3047 6488 2.325082 GCACACGTTGGCTGGGTAG 61.325 63.158 1.09 0.00 0.00 3.18
3057 6498 2.755929 GCTGGGTAGCGTTTCAGAG 58.244 57.895 0.78 0.00 40.67 3.35
3058 6499 1.362406 GCTGGGTAGCGTTTCAGAGC 61.362 60.000 0.78 0.00 40.67 4.09
3059 6500 0.037326 CTGGGTAGCGTTTCAGAGCA 60.037 55.000 0.00 0.00 35.48 4.26
3060 6501 0.320421 TGGGTAGCGTTTCAGAGCAC 60.320 55.000 0.00 0.00 35.48 4.40
3061 6502 0.320421 GGGTAGCGTTTCAGAGCACA 60.320 55.000 0.00 0.00 35.48 4.57
3062 6503 0.790814 GGTAGCGTTTCAGAGCACAC 59.209 55.000 0.00 0.00 35.48 3.82
3063 6504 1.497991 GTAGCGTTTCAGAGCACACA 58.502 50.000 0.00 0.00 35.48 3.72
3064 6505 1.192534 GTAGCGTTTCAGAGCACACAC 59.807 52.381 0.00 0.00 35.48 3.82
3065 6506 1.160329 AGCGTTTCAGAGCACACACC 61.160 55.000 0.00 0.00 35.48 4.16
3066 6507 1.160329 GCGTTTCAGAGCACACACCT 61.160 55.000 0.00 0.00 0.00 4.00
3067 6508 1.872237 GCGTTTCAGAGCACACACCTA 60.872 52.381 0.00 0.00 0.00 3.08
3068 6509 2.479837 CGTTTCAGAGCACACACCTAA 58.520 47.619 0.00 0.00 0.00 2.69
3069 6510 2.869801 CGTTTCAGAGCACACACCTAAA 59.130 45.455 0.00 0.00 0.00 1.85
3070 6511 3.498397 CGTTTCAGAGCACACACCTAAAT 59.502 43.478 0.00 0.00 0.00 1.40
3071 6512 4.688879 CGTTTCAGAGCACACACCTAAATA 59.311 41.667 0.00 0.00 0.00 1.40
3072 6513 5.351465 CGTTTCAGAGCACACACCTAAATAT 59.649 40.000 0.00 0.00 0.00 1.28
3073 6514 6.546395 GTTTCAGAGCACACACCTAAATATG 58.454 40.000 0.00 0.00 0.00 1.78
3074 6515 4.769688 TCAGAGCACACACCTAAATATGG 58.230 43.478 0.00 0.00 0.00 2.74
3075 6516 3.313526 CAGAGCACACACCTAAATATGGC 59.686 47.826 0.00 0.00 0.00 4.40
3076 6517 3.054434 AGAGCACACACCTAAATATGGCA 60.054 43.478 0.00 0.00 0.00 4.92
3077 6518 3.282021 AGCACACACCTAAATATGGCAG 58.718 45.455 0.00 0.00 0.00 4.85
3078 6519 2.223572 GCACACACCTAAATATGGCAGC 60.224 50.000 0.00 0.00 0.00 5.25
3079 6520 2.032054 CACACACCTAAATATGGCAGCG 59.968 50.000 0.00 0.00 0.00 5.18
3080 6521 1.603802 CACACCTAAATATGGCAGCGG 59.396 52.381 0.00 0.00 0.00 5.52
3081 6522 1.211949 ACACCTAAATATGGCAGCGGT 59.788 47.619 0.00 0.00 0.00 5.68
3082 6523 1.873591 CACCTAAATATGGCAGCGGTC 59.126 52.381 0.00 0.00 0.00 4.79
3083 6524 1.202770 ACCTAAATATGGCAGCGGTCC 60.203 52.381 0.00 0.00 0.00 4.46
3084 6525 1.523758 CTAAATATGGCAGCGGTCCC 58.476 55.000 0.00 0.00 0.00 4.46
3085 6526 0.109723 TAAATATGGCAGCGGTCCCC 59.890 55.000 0.00 0.00 0.00 4.81
3086 6527 2.640581 AAATATGGCAGCGGTCCCCC 62.641 60.000 0.00 0.00 0.00 5.40
3087 6528 4.815973 TATGGCAGCGGTCCCCCT 62.816 66.667 0.00 0.00 0.00 4.79
3095 6536 2.933834 CGGTCCCCCTCACCCTTT 60.934 66.667 0.00 0.00 0.00 3.11
3096 6537 2.763902 GGTCCCCCTCACCCTTTG 59.236 66.667 0.00 0.00 0.00 2.77
3097 6538 2.035783 GTCCCCCTCACCCTTTGC 59.964 66.667 0.00 0.00 0.00 3.68
3098 6539 3.264845 TCCCCCTCACCCTTTGCC 61.265 66.667 0.00 0.00 0.00 4.52
3099 6540 3.589542 CCCCCTCACCCTTTGCCA 61.590 66.667 0.00 0.00 0.00 4.92
3100 6541 2.036256 CCCCTCACCCTTTGCCAG 59.964 66.667 0.00 0.00 0.00 4.85
3101 6542 2.845345 CCCCTCACCCTTTGCCAGT 61.845 63.158 0.00 0.00 0.00 4.00
3102 6543 1.153756 CCCTCACCCTTTGCCAGTT 59.846 57.895 0.00 0.00 0.00 3.16
3103 6544 1.181098 CCCTCACCCTTTGCCAGTTG 61.181 60.000 0.00 0.00 0.00 3.16
3104 6545 0.468029 CCTCACCCTTTGCCAGTTGT 60.468 55.000 0.00 0.00 0.00 3.32
3105 6546 0.954452 CTCACCCTTTGCCAGTTGTC 59.046 55.000 0.00 0.00 0.00 3.18
3106 6547 0.257328 TCACCCTTTGCCAGTTGTCA 59.743 50.000 0.00 0.00 0.00 3.58
3107 6548 1.133513 TCACCCTTTGCCAGTTGTCAT 60.134 47.619 0.00 0.00 0.00 3.06
3108 6549 2.107378 TCACCCTTTGCCAGTTGTCATA 59.893 45.455 0.00 0.00 0.00 2.15
3109 6550 2.228822 CACCCTTTGCCAGTTGTCATAC 59.771 50.000 0.00 0.00 0.00 2.39
3110 6551 2.158534 ACCCTTTGCCAGTTGTCATACA 60.159 45.455 0.00 0.00 0.00 2.29
3111 6552 2.890311 CCCTTTGCCAGTTGTCATACAA 59.110 45.455 0.00 0.00 35.42 2.41
3112 6553 3.320541 CCCTTTGCCAGTTGTCATACAAA 59.679 43.478 0.00 0.00 40.15 2.83
3113 6554 4.202202 CCCTTTGCCAGTTGTCATACAAAA 60.202 41.667 0.00 0.00 40.15 2.44
3114 6555 5.355596 CCTTTGCCAGTTGTCATACAAAAA 58.644 37.500 0.00 0.00 40.15 1.94
3115 6556 5.463061 CCTTTGCCAGTTGTCATACAAAAAG 59.537 40.000 0.00 1.50 40.15 2.27
3116 6557 4.582701 TGCCAGTTGTCATACAAAAAGG 57.417 40.909 0.00 0.00 40.15 3.11
3117 6558 4.211125 TGCCAGTTGTCATACAAAAAGGA 58.789 39.130 9.34 0.00 40.15 3.36
3118 6559 4.646945 TGCCAGTTGTCATACAAAAAGGAA 59.353 37.500 9.34 0.00 40.15 3.36
3119 6560 5.127845 TGCCAGTTGTCATACAAAAAGGAAA 59.872 36.000 9.34 0.00 40.15 3.13
3120 6561 5.691754 GCCAGTTGTCATACAAAAAGGAAAG 59.308 40.000 9.34 0.00 40.15 2.62
3121 6562 6.460953 GCCAGTTGTCATACAAAAAGGAAAGA 60.461 38.462 9.34 0.00 40.15 2.52
3122 6563 7.488322 CCAGTTGTCATACAAAAAGGAAAGAA 58.512 34.615 0.00 0.00 40.15 2.52
3123 6564 7.978975 CCAGTTGTCATACAAAAAGGAAAGAAA 59.021 33.333 0.00 0.00 40.15 2.52
3124 6565 8.807581 CAGTTGTCATACAAAAAGGAAAGAAAC 58.192 33.333 0.00 0.00 40.15 2.78
3125 6566 7.700656 AGTTGTCATACAAAAAGGAAAGAAACG 59.299 33.333 0.00 0.00 40.15 3.60
3126 6567 6.500041 TGTCATACAAAAAGGAAAGAAACGG 58.500 36.000 0.00 0.00 0.00 4.44
3127 6568 6.095720 TGTCATACAAAAAGGAAAGAAACGGT 59.904 34.615 0.00 0.00 0.00 4.83
3128 6569 6.635641 GTCATACAAAAAGGAAAGAAACGGTC 59.364 38.462 0.00 0.00 0.00 4.79
3129 6570 4.380841 ACAAAAAGGAAAGAAACGGTCC 57.619 40.909 0.00 0.00 0.00 4.46
3130 6571 4.021229 ACAAAAAGGAAAGAAACGGTCCT 58.979 39.130 0.00 0.00 43.86 3.85
3131 6572 4.142249 ACAAAAAGGAAAGAAACGGTCCTG 60.142 41.667 0.00 0.00 41.03 3.86
3132 6573 3.570912 AAAGGAAAGAAACGGTCCTGA 57.429 42.857 0.00 0.00 41.03 3.86
3133 6574 2.545537 AGGAAAGAAACGGTCCTGAC 57.454 50.000 0.00 0.00 40.37 3.51
3144 6585 2.682893 GTCCTGACCATCATCGCAC 58.317 57.895 0.00 0.00 0.00 5.34
3145 6586 0.108186 GTCCTGACCATCATCGCACA 60.108 55.000 0.00 0.00 0.00 4.57
3146 6587 0.832626 TCCTGACCATCATCGCACAT 59.167 50.000 0.00 0.00 0.00 3.21
3147 6588 0.942252 CCTGACCATCATCGCACATG 59.058 55.000 0.00 0.00 0.00 3.21
3148 6589 0.942252 CTGACCATCATCGCACATGG 59.058 55.000 0.00 5.15 44.68 3.66
3149 6590 1.096967 TGACCATCATCGCACATGGC 61.097 55.000 0.00 0.00 43.16 4.40
3158 6599 3.589881 GCACATGGCGCAGGATCC 61.590 66.667 10.83 2.48 0.00 3.36
3159 6600 2.191375 CACATGGCGCAGGATCCT 59.809 61.111 9.02 9.02 0.00 3.24
3160 6601 1.447217 CACATGGCGCAGGATCCTA 59.553 57.895 15.67 0.00 0.00 2.94
3161 6602 0.882042 CACATGGCGCAGGATCCTAC 60.882 60.000 15.67 8.16 0.00 3.18
3162 6603 1.302033 CATGGCGCAGGATCCTACC 60.302 63.158 15.67 16.58 0.00 3.18
3163 6604 2.520536 ATGGCGCAGGATCCTACCC 61.521 63.158 15.67 14.99 0.00 3.69
3164 6605 3.942439 GGCGCAGGATCCTACCCC 61.942 72.222 15.67 6.98 0.00 4.95
3165 6606 3.942439 GCGCAGGATCCTACCCCC 61.942 72.222 15.67 0.00 0.00 5.40
3166 6607 3.616721 CGCAGGATCCTACCCCCG 61.617 72.222 15.67 8.59 0.00 5.73
3167 6608 2.122989 GCAGGATCCTACCCCCGA 60.123 66.667 15.67 0.00 0.00 5.14
3168 6609 1.536662 GCAGGATCCTACCCCCGAT 60.537 63.158 15.67 0.00 0.00 4.18
3169 6610 1.545706 GCAGGATCCTACCCCCGATC 61.546 65.000 15.67 0.00 35.21 3.69
3170 6611 0.178932 CAGGATCCTACCCCCGATCA 60.179 60.000 15.67 0.00 37.26 2.92
3171 6612 0.793617 AGGATCCTACCCCCGATCAT 59.206 55.000 14.27 0.00 37.26 2.45
3172 6613 2.008400 AGGATCCTACCCCCGATCATA 58.992 52.381 14.27 0.00 37.26 2.15
3173 6614 2.385765 AGGATCCTACCCCCGATCATAA 59.614 50.000 14.27 0.00 37.26 1.90
3174 6615 2.500504 GGATCCTACCCCCGATCATAAC 59.499 54.545 3.84 0.00 37.26 1.89
3175 6616 2.019807 TCCTACCCCCGATCATAACC 57.980 55.000 0.00 0.00 0.00 2.85
3176 6617 0.606604 CCTACCCCCGATCATAACCG 59.393 60.000 0.00 0.00 0.00 4.44
3177 6618 0.037605 CTACCCCCGATCATAACCGC 60.038 60.000 0.00 0.00 0.00 5.68
3178 6619 1.474332 TACCCCCGATCATAACCGCC 61.474 60.000 0.00 0.00 0.00 6.13
3179 6620 2.032071 CCCCGATCATAACCGCCC 59.968 66.667 0.00 0.00 0.00 6.13
3180 6621 2.813726 CCCCGATCATAACCGCCCA 61.814 63.158 0.00 0.00 0.00 5.36
3181 6622 1.301716 CCCGATCATAACCGCCCAG 60.302 63.158 0.00 0.00 0.00 4.45
3182 6623 1.961277 CCGATCATAACCGCCCAGC 60.961 63.158 0.00 0.00 0.00 4.85
3183 6624 1.227527 CGATCATAACCGCCCAGCA 60.228 57.895 0.00 0.00 0.00 4.41
3184 6625 1.498865 CGATCATAACCGCCCAGCAC 61.499 60.000 0.00 0.00 0.00 4.40
3185 6626 0.463654 GATCATAACCGCCCAGCACA 60.464 55.000 0.00 0.00 0.00 4.57
3186 6627 0.183492 ATCATAACCGCCCAGCACAT 59.817 50.000 0.00 0.00 0.00 3.21
3187 6628 0.747644 TCATAACCGCCCAGCACATG 60.748 55.000 0.00 0.00 0.00 3.21
3234 6675 3.565307 TGGGCAAAGAAATCACAGTTCT 58.435 40.909 0.00 0.00 36.90 3.01
3334 6775 0.739813 GGACGTGACTACATGGGCAC 60.740 60.000 0.00 0.00 37.35 5.01
3494 7157 2.022764 TGACTACAACCATGCATCCG 57.977 50.000 0.00 0.00 0.00 4.18
3614 7277 5.986135 GGCGAAGTATGTCATAGTCTGATTT 59.014 40.000 0.54 0.00 35.97 2.17
3654 7317 3.181440 GGCTATGATTGGGAAGGATCACA 60.181 47.826 0.00 0.00 37.13 3.58
3699 7362 5.208890 ACACCTCTGGTATATTGCTAGTCA 58.791 41.667 0.00 0.00 32.11 3.41
4043 7708 2.681976 CGCTTGGATGAAATGACTCCCT 60.682 50.000 0.00 0.00 0.00 4.20
4065 7730 2.592308 GCCCTGGTCCTTAGGCTG 59.408 66.667 0.00 0.00 42.34 4.85
4074 7739 1.488393 GTCCTTAGGCTGGCAGATCTT 59.512 52.381 20.86 0.00 0.00 2.40
4251 7916 2.296190 TGACTCGAGCAGCTTTAGACAA 59.704 45.455 13.61 0.00 0.00 3.18
4360 8026 2.355716 GGCATGCCAAGGTAAGTAGTCA 60.356 50.000 32.08 0.00 35.81 3.41
4475 8141 0.741326 ATCGTGAGACCCGACATCTG 59.259 55.000 0.00 0.00 46.97 2.90
4530 8196 2.651382 TATCCTCGTCCGATCCTTCA 57.349 50.000 0.00 0.00 0.00 3.02
4570 8236 1.144057 GCATACTGGAGGTGGGTCG 59.856 63.158 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 3.726557 TGCCTCAGATGGTCAGATTTT 57.273 42.857 0.00 0.00 0.00 1.82
21 22 3.891977 TGTAGAGTATGCCTCAGATGGTC 59.108 47.826 0.00 0.00 43.12 4.02
27 28 3.027412 ACCACTGTAGAGTATGCCTCAG 58.973 50.000 0.00 0.00 43.12 3.35
32 33 3.490078 GCAGAGACCACTGTAGAGTATGC 60.490 52.174 0.00 0.00 39.73 3.14
36 37 1.889829 GTGCAGAGACCACTGTAGAGT 59.110 52.381 0.00 0.00 39.73 3.24
41 42 2.292267 CTTTTGTGCAGAGACCACTGT 58.708 47.619 0.00 0.00 39.73 3.55
62 63 1.265365 GGTGTCGGCTATCGTAGTACC 59.735 57.143 0.00 0.00 40.32 3.34
65 66 0.462581 TCGGTGTCGGCTATCGTAGT 60.463 55.000 0.00 0.00 40.32 2.73
67 68 0.659427 CTTCGGTGTCGGCTATCGTA 59.341 55.000 0.00 0.00 40.32 3.43
88 89 1.668919 GCTACGCACTACTTCACTGCA 60.669 52.381 0.00 0.00 0.00 4.41
139 140 0.595095 CAAAGAAGGCTGCCACACTC 59.405 55.000 22.65 11.32 0.00 3.51
273 274 8.077991 CCGCAATACATGAAATCAATAATGTCT 58.922 33.333 0.00 0.00 35.07 3.41
301 302 4.938756 AACCCCCTGCCTGGTGGA 62.939 66.667 9.01 0.00 34.34 4.02
302 303 4.684134 CAACCCCCTGCCTGGTGG 62.684 72.222 0.00 0.00 34.34 4.61
316 317 3.798337 TCGACGGTTTTGAACTAGTCAAC 59.202 43.478 0.00 0.00 46.09 3.18
320 321 2.223876 TGCTCGACGGTTTTGAACTAGT 60.224 45.455 0.00 0.00 0.00 2.57
322 323 2.512485 TGCTCGACGGTTTTGAACTA 57.488 45.000 0.00 0.00 0.00 2.24
327 328 1.673760 CATGTTGCTCGACGGTTTTG 58.326 50.000 0.00 0.00 0.00 2.44
328 329 0.040425 GCATGTTGCTCGACGGTTTT 60.040 50.000 0.00 0.00 40.96 2.43
330 331 0.955428 ATGCATGTTGCTCGACGGTT 60.955 50.000 0.00 0.00 45.31 4.44
331 332 1.375908 ATGCATGTTGCTCGACGGT 60.376 52.632 0.00 0.00 45.31 4.83
332 333 1.061411 CATGCATGTTGCTCGACGG 59.939 57.895 18.91 0.00 45.31 4.79
338 339 1.200716 CGAAAGACCATGCATGTTGCT 59.799 47.619 24.58 15.19 45.31 3.91
339 340 1.621107 CGAAAGACCATGCATGTTGC 58.379 50.000 24.58 10.75 45.29 4.17
340 341 1.200716 AGCGAAAGACCATGCATGTTG 59.799 47.619 24.58 13.14 0.00 3.33
342 343 0.806868 CAGCGAAAGACCATGCATGT 59.193 50.000 24.58 13.09 0.00 3.21
344 345 1.674441 CATCAGCGAAAGACCATGCAT 59.326 47.619 0.00 0.00 0.00 3.96
345 346 1.089112 CATCAGCGAAAGACCATGCA 58.911 50.000 0.00 0.00 0.00 3.96
346 347 1.063174 GTCATCAGCGAAAGACCATGC 59.937 52.381 0.00 0.00 0.00 4.06
347 348 1.325640 CGTCATCAGCGAAAGACCATG 59.674 52.381 0.00 0.00 0.00 3.66
348 349 1.645034 CGTCATCAGCGAAAGACCAT 58.355 50.000 0.00 0.00 0.00 3.55
358 359 3.260483 CTCGGCAGCGTCATCAGC 61.260 66.667 0.00 0.00 0.00 4.26
359 360 2.563050 TTCCTCGGCAGCGTCATCAG 62.563 60.000 0.00 0.00 0.00 2.90
367 368 0.665298 GGATTGAATTCCTCGGCAGC 59.335 55.000 2.27 0.00 32.68 5.25
370 371 1.598882 GAGGGATTGAATTCCTCGGC 58.401 55.000 16.40 0.00 37.85 5.54
384 385 3.276578 TCCTTAAGATTAGTGGGGAGGGA 59.723 47.826 3.36 0.00 0.00 4.20
389 390 5.850046 ATGGATCCTTAAGATTAGTGGGG 57.150 43.478 14.23 0.00 34.42 4.96
390 391 6.577239 GCCTATGGATCCTTAAGATTAGTGGG 60.577 46.154 14.23 6.40 34.42 4.61
398 399 4.916041 CATGGCCTATGGATCCTTAAGA 57.084 45.455 14.23 0.00 32.95 2.10
416 417 2.772739 CCTTCTCAGGAACGCCATG 58.227 57.895 0.00 0.00 44.19 3.66
425 426 1.000731 GGCGATCTGATCCTTCTCAGG 59.999 57.143 11.84 0.00 42.42 3.86
430 431 6.377327 TTTTATTTGGCGATCTGATCCTTC 57.623 37.500 11.84 2.95 0.00 3.46
433 434 5.617751 CGGATTTTATTTGGCGATCTGATCC 60.618 44.000 11.84 5.06 0.00 3.36
436 437 3.003275 GCGGATTTTATTTGGCGATCTGA 59.997 43.478 0.00 0.00 0.00 3.27
444 445 2.021457 ACCTCCGCGGATTTTATTTGG 58.979 47.619 31.19 24.96 36.31 3.28
453 454 2.494059 CATAAAATGACCTCCGCGGAT 58.506 47.619 31.19 16.09 36.31 4.18
457 458 1.388547 TGGCATAAAATGACCTCCGC 58.611 50.000 0.00 0.00 37.55 5.54
458 459 3.480470 AGATGGCATAAAATGACCTCCG 58.520 45.455 0.00 0.00 37.55 4.63
471 472 5.131642 TCTGACCTTGAAGAATAGATGGCAT 59.868 40.000 0.00 0.00 0.00 4.40
476 477 8.324306 TCATTGTTCTGACCTTGAAGAATAGAT 58.676 33.333 0.00 0.00 35.95 1.98
477 478 7.679783 TCATTGTTCTGACCTTGAAGAATAGA 58.320 34.615 0.00 0.00 35.95 1.98
478 479 7.912056 TCATTGTTCTGACCTTGAAGAATAG 57.088 36.000 0.00 0.00 35.95 1.73
479 480 8.868522 AATCATTGTTCTGACCTTGAAGAATA 57.131 30.769 0.00 0.00 35.95 1.75
482 483 6.772233 TGAAATCATTGTTCTGACCTTGAAGA 59.228 34.615 0.00 0.00 0.00 2.87
483 484 6.973843 TGAAATCATTGTTCTGACCTTGAAG 58.026 36.000 0.00 0.00 0.00 3.02
484 485 6.957920 TGAAATCATTGTTCTGACCTTGAA 57.042 33.333 0.00 0.00 0.00 2.69
503 507 2.235155 TCGAATTCCCTGACGGATGAAA 59.765 45.455 0.00 0.00 41.63 2.69
511 515 4.542075 GGGCTCGAATTCCCTGAC 57.458 61.111 9.21 0.00 39.46 3.51
523 527 9.911138 GAGTAGTTAATAGTGTATAAAGGGCTC 57.089 37.037 0.00 0.00 0.00 4.70
547 551 9.922305 CGCTTTTATATTTCTTTACAGAAGGAG 57.078 33.333 0.00 0.00 40.28 3.69
552 556 8.323140 GCGTACGCTTTTATATTTCTTTACAGA 58.677 33.333 31.95 0.00 38.26 3.41
553 557 8.459147 GCGTACGCTTTTATATTTCTTTACAG 57.541 34.615 31.95 0.00 38.26 2.74
571 575 8.231304 TGGTAAAGAAATATAATAGCGTACGC 57.769 34.615 32.17 32.17 42.33 4.42
574 578 9.715121 CCCTTGGTAAAGAAATATAATAGCGTA 57.285 33.333 0.00 0.00 35.19 4.42
575 579 8.434392 TCCCTTGGTAAAGAAATATAATAGCGT 58.566 33.333 0.00 0.00 35.19 5.07
577 581 9.794719 ACTCCCTTGGTAAAGAAATATAATAGC 57.205 33.333 0.00 0.00 35.19 2.97
595 599 4.957684 ATCGGTCCTTTATACTCCCTTG 57.042 45.455 0.00 0.00 0.00 3.61
596 600 5.681639 CAAATCGGTCCTTTATACTCCCTT 58.318 41.667 0.00 0.00 0.00 3.95
606 610 2.359900 CAGCTAGCAAATCGGTCCTTT 58.640 47.619 18.83 0.00 0.00 3.11
609 613 0.107654 ACCAGCTAGCAAATCGGTCC 60.108 55.000 18.83 0.00 0.00 4.46
612 616 0.652592 CGAACCAGCTAGCAAATCGG 59.347 55.000 18.83 11.15 0.00 4.18
616 620 1.289109 GCGACGAACCAGCTAGCAAA 61.289 55.000 18.83 0.00 0.00 3.68
636 640 6.127225 CCTCCGGTCTAACATGATGATGATAT 60.127 42.308 0.00 0.00 33.36 1.63
687 691 7.387119 TGCGAATAAAGTAGAGAGACACTTA 57.613 36.000 0.00 0.00 33.92 2.24
797 802 1.267732 GCACACGTAGCATTGATGAGC 60.268 52.381 7.24 0.00 0.00 4.26
798 803 1.328680 GGCACACGTAGCATTGATGAG 59.671 52.381 13.31 0.00 0.00 2.90
804 809 2.390599 CGCAGGCACACGTAGCATT 61.391 57.895 13.31 0.00 0.00 3.56
845 1248 1.128507 CGATCGATGGTTGTGTGGTTG 59.871 52.381 10.26 0.00 0.00 3.77
916 4243 1.018910 TGAACTCGTGACGACACAGA 58.981 50.000 17.71 13.66 46.20 3.41
920 4247 3.466712 GAGTATGAACTCGTGACGACA 57.533 47.619 2.39 0.59 42.66 4.35
939 4266 1.527433 CTCACGCACACTCAGGGAGA 61.527 60.000 0.00 0.00 37.60 3.71
947 4278 1.164411 CTCTCTCTCTCACGCACACT 58.836 55.000 0.00 0.00 0.00 3.55
997 4330 1.550976 GACCGTCTTCTTCTCCATGGT 59.449 52.381 12.58 0.00 0.00 3.55
1136 4472 0.669318 GACGGTGTTGAAGGCGATGA 60.669 55.000 0.00 0.00 0.00 2.92
1459 4813 2.740055 CTTGAAGCTCGCACCGCT 60.740 61.111 0.00 0.00 39.94 5.52
1545 4906 4.671590 TCCGGGTCCTCGAGCACA 62.672 66.667 9.10 0.00 0.00 4.57
1804 5165 3.112709 GAGGAACACGACGCTGCC 61.113 66.667 0.00 0.00 0.00 4.85
1936 5297 2.920912 TGGCTTCTCCGGGTCGTT 60.921 61.111 0.00 0.00 37.80 3.85
1990 5373 2.124736 CATGAACCCGTCCGGCAT 60.125 61.111 0.00 0.00 33.26 4.40
2136 5521 3.367743 CACAGCATTGGCACGCCT 61.368 61.111 9.92 0.00 44.61 5.52
2160 5545 2.201921 TCTTCTGCTCCGAGTACAGT 57.798 50.000 0.00 0.00 33.12 3.55
2440 5826 2.019249 GCCAAGCTCATGCATCACTTA 58.981 47.619 0.00 0.00 42.74 2.24
2564 5967 5.598769 AGATTAAGGTTACGTAGATGGTGC 58.401 41.667 0.00 0.00 0.00 5.01
2584 5987 1.668419 CCCGCGAAAATCAGGAAGAT 58.332 50.000 8.23 0.00 39.09 2.40
2586 5989 0.676782 ACCCCGCGAAAATCAGGAAG 60.677 55.000 8.23 0.00 0.00 3.46
2587 5990 0.250989 AACCCCGCGAAAATCAGGAA 60.251 50.000 8.23 0.00 0.00 3.36
2588 5991 0.958382 CAACCCCGCGAAAATCAGGA 60.958 55.000 8.23 0.00 0.00 3.86
2589 5992 1.506262 CAACCCCGCGAAAATCAGG 59.494 57.895 8.23 0.00 0.00 3.86
2611 6018 4.410099 TGATTGGAAGAGAAAATGGCACT 58.590 39.130 0.00 0.00 0.00 4.40
2612 6019 4.460382 TCTGATTGGAAGAGAAAATGGCAC 59.540 41.667 0.00 0.00 0.00 5.01
2628 6035 0.877071 AGTTTGGCGTGCTCTGATTG 59.123 50.000 0.00 0.00 0.00 2.67
2639 6046 1.992170 ACGTAAGAGCTAGTTTGGCG 58.008 50.000 0.00 0.00 43.62 5.69
2672 6079 5.278561 GGCTTTGCTACATCTACGTAGAGAT 60.279 44.000 27.81 20.42 41.21 2.75
2673 6080 4.036498 GGCTTTGCTACATCTACGTAGAGA 59.964 45.833 27.81 15.72 41.21 3.10
2674 6081 4.291783 GGCTTTGCTACATCTACGTAGAG 58.708 47.826 27.81 21.15 41.21 2.43
2675 6082 3.067742 GGGCTTTGCTACATCTACGTAGA 59.932 47.826 26.55 26.55 41.21 2.59
2676 6083 3.381949 GGGCTTTGCTACATCTACGTAG 58.618 50.000 16.73 16.73 41.56 3.51
2677 6084 2.223641 CGGGCTTTGCTACATCTACGTA 60.224 50.000 0.00 0.00 0.00 3.57
2678 6085 1.470979 CGGGCTTTGCTACATCTACGT 60.471 52.381 0.00 0.00 0.00 3.57
2679 6086 1.209128 CGGGCTTTGCTACATCTACG 58.791 55.000 0.00 0.00 0.00 3.51
2858 6299 5.934402 ACGGAAGGAGTATGTCACTAAAT 57.066 39.130 0.00 0.00 37.72 1.40
2917 6358 3.563808 TGAACGGAAGGAGTTGTTGATTG 59.436 43.478 0.00 0.00 31.14 2.67
2993 6434 6.874134 CGGCCTTACTAAAATGTGCTAGATAT 59.126 38.462 0.00 0.00 0.00 1.63
3016 6457 4.435436 TGTGCTGGCTAGTCGCGG 62.435 66.667 6.13 0.00 40.44 6.46
3017 6458 3.181967 GTGTGCTGGCTAGTCGCG 61.182 66.667 0.00 0.00 40.44 5.87
3018 6459 3.181967 CGTGTGCTGGCTAGTCGC 61.182 66.667 0.00 4.53 38.13 5.19
3019 6460 1.372997 AACGTGTGCTGGCTAGTCG 60.373 57.895 0.00 2.15 0.00 4.18
3020 6461 1.291877 CCAACGTGTGCTGGCTAGTC 61.292 60.000 0.00 0.00 0.00 2.59
3021 6462 1.301716 CCAACGTGTGCTGGCTAGT 60.302 57.895 0.00 0.00 0.00 2.57
3022 6463 3.566261 CCAACGTGTGCTGGCTAG 58.434 61.111 0.00 0.00 0.00 3.42
3028 6469 2.731691 CTACCCAGCCAACGTGTGCT 62.732 60.000 6.27 6.27 38.67 4.40
3029 6470 2.281208 TACCCAGCCAACGTGTGC 60.281 61.111 1.50 1.50 0.00 4.57
3030 6471 2.325082 GCTACCCAGCCAACGTGTG 61.325 63.158 0.00 0.00 42.37 3.82
3031 6472 2.032071 GCTACCCAGCCAACGTGT 59.968 61.111 0.00 0.00 42.37 4.49
3032 6473 3.118454 CGCTACCCAGCCAACGTG 61.118 66.667 0.00 0.00 45.64 4.49
3033 6474 2.669777 AAACGCTACCCAGCCAACGT 62.670 55.000 0.00 0.00 45.64 3.99
3034 6475 1.908066 GAAACGCTACCCAGCCAACG 61.908 60.000 0.00 0.00 45.64 4.10
3035 6476 0.887387 TGAAACGCTACCCAGCCAAC 60.887 55.000 0.00 0.00 45.64 3.77
3036 6477 0.605319 CTGAAACGCTACCCAGCCAA 60.605 55.000 0.00 0.00 45.64 4.52
3037 6478 1.003839 CTGAAACGCTACCCAGCCA 60.004 57.895 0.00 0.00 45.64 4.75
3038 6479 0.741221 CTCTGAAACGCTACCCAGCC 60.741 60.000 0.00 0.00 45.64 4.85
3039 6480 1.362406 GCTCTGAAACGCTACCCAGC 61.362 60.000 0.00 0.00 44.90 4.85
3040 6481 0.037326 TGCTCTGAAACGCTACCCAG 60.037 55.000 0.00 0.00 0.00 4.45
3041 6482 0.320421 GTGCTCTGAAACGCTACCCA 60.320 55.000 0.00 0.00 0.00 4.51
3042 6483 0.320421 TGTGCTCTGAAACGCTACCC 60.320 55.000 0.00 0.00 0.00 3.69
3043 6484 0.790814 GTGTGCTCTGAAACGCTACC 59.209 55.000 0.00 0.00 0.00 3.18
3044 6485 1.192534 GTGTGTGCTCTGAAACGCTAC 59.807 52.381 5.60 0.00 0.00 3.58
3045 6486 1.497991 GTGTGTGCTCTGAAACGCTA 58.502 50.000 5.60 0.00 0.00 4.26
3046 6487 1.160329 GGTGTGTGCTCTGAAACGCT 61.160 55.000 5.60 0.00 0.00 5.07
3047 6488 1.160329 AGGTGTGTGCTCTGAAACGC 61.160 55.000 0.00 0.00 0.00 4.84
3048 6489 2.148916 TAGGTGTGTGCTCTGAAACG 57.851 50.000 0.00 0.00 0.00 3.60
3049 6490 6.403636 CCATATTTAGGTGTGTGCTCTGAAAC 60.404 42.308 0.00 0.00 0.00 2.78
3050 6491 5.647658 CCATATTTAGGTGTGTGCTCTGAAA 59.352 40.000 0.00 0.00 0.00 2.69
3051 6492 5.185454 CCATATTTAGGTGTGTGCTCTGAA 58.815 41.667 0.00 0.00 0.00 3.02
3052 6493 4.769688 CCATATTTAGGTGTGTGCTCTGA 58.230 43.478 0.00 0.00 0.00 3.27
3053 6494 3.313526 GCCATATTTAGGTGTGTGCTCTG 59.686 47.826 0.00 0.00 0.00 3.35
3054 6495 3.054434 TGCCATATTTAGGTGTGTGCTCT 60.054 43.478 0.00 0.00 0.00 4.09
3055 6496 3.278574 TGCCATATTTAGGTGTGTGCTC 58.721 45.455 0.00 0.00 0.00 4.26
3056 6497 3.282021 CTGCCATATTTAGGTGTGTGCT 58.718 45.455 0.00 0.00 0.00 4.40
3057 6498 2.223572 GCTGCCATATTTAGGTGTGTGC 60.224 50.000 0.00 0.00 0.00 4.57
3058 6499 2.032054 CGCTGCCATATTTAGGTGTGTG 59.968 50.000 0.00 0.00 0.00 3.82
3059 6500 2.288666 CGCTGCCATATTTAGGTGTGT 58.711 47.619 0.00 0.00 0.00 3.72
3060 6501 1.603802 CCGCTGCCATATTTAGGTGTG 59.396 52.381 0.00 0.00 0.00 3.82
3061 6502 1.211949 ACCGCTGCCATATTTAGGTGT 59.788 47.619 0.00 0.00 0.00 4.16
3062 6503 1.873591 GACCGCTGCCATATTTAGGTG 59.126 52.381 0.00 0.00 0.00 4.00
3063 6504 1.202770 GGACCGCTGCCATATTTAGGT 60.203 52.381 0.00 0.00 0.00 3.08
3064 6505 1.523758 GGACCGCTGCCATATTTAGG 58.476 55.000 0.00 0.00 0.00 2.69
3065 6506 1.523758 GGGACCGCTGCCATATTTAG 58.476 55.000 0.00 0.00 0.00 1.85
3066 6507 0.109723 GGGGACCGCTGCCATATTTA 59.890 55.000 0.24 0.00 40.86 1.40
3067 6508 1.152756 GGGGACCGCTGCCATATTT 60.153 57.895 0.24 0.00 40.86 1.40
3068 6509 2.515901 GGGGACCGCTGCCATATT 59.484 61.111 0.24 0.00 40.86 1.28
3080 6521 2.035783 GCAAAGGGTGAGGGGGAC 59.964 66.667 0.00 0.00 0.00 4.46
3081 6522 3.264845 GGCAAAGGGTGAGGGGGA 61.265 66.667 0.00 0.00 0.00 4.81
3082 6523 3.589542 TGGCAAAGGGTGAGGGGG 61.590 66.667 0.00 0.00 0.00 5.40
3083 6524 2.036256 CTGGCAAAGGGTGAGGGG 59.964 66.667 0.00 0.00 0.00 4.79
3084 6525 1.153756 AACTGGCAAAGGGTGAGGG 59.846 57.895 0.00 0.00 0.00 4.30
3085 6526 0.468029 ACAACTGGCAAAGGGTGAGG 60.468 55.000 0.00 0.00 0.00 3.86
3086 6527 0.954452 GACAACTGGCAAAGGGTGAG 59.046 55.000 0.00 0.00 0.00 3.51
3087 6528 0.257328 TGACAACTGGCAAAGGGTGA 59.743 50.000 0.00 0.00 0.00 4.02
3088 6529 1.331214 ATGACAACTGGCAAAGGGTG 58.669 50.000 0.00 0.00 36.16 4.61
3089 6530 2.158534 TGTATGACAACTGGCAAAGGGT 60.159 45.455 0.00 0.00 36.16 4.34
3090 6531 2.513753 TGTATGACAACTGGCAAAGGG 58.486 47.619 0.00 0.00 36.16 3.95
3091 6532 4.582701 TTTGTATGACAACTGGCAAAGG 57.417 40.909 0.00 0.00 37.90 3.11
3092 6533 5.463061 CCTTTTTGTATGACAACTGGCAAAG 59.537 40.000 0.00 6.52 37.90 2.77
3093 6534 5.127845 TCCTTTTTGTATGACAACTGGCAAA 59.872 36.000 0.00 0.00 37.90 3.68
3094 6535 4.646945 TCCTTTTTGTATGACAACTGGCAA 59.353 37.500 0.00 0.00 37.90 4.52
3095 6536 4.211125 TCCTTTTTGTATGACAACTGGCA 58.789 39.130 0.00 0.00 37.90 4.92
3096 6537 4.846779 TCCTTTTTGTATGACAACTGGC 57.153 40.909 0.00 0.00 37.90 4.85
3097 6538 7.038154 TCTTTCCTTTTTGTATGACAACTGG 57.962 36.000 0.00 0.00 37.90 4.00
3098 6539 8.807581 GTTTCTTTCCTTTTTGTATGACAACTG 58.192 33.333 0.00 0.00 37.90 3.16
3099 6540 7.700656 CGTTTCTTTCCTTTTTGTATGACAACT 59.299 33.333 0.00 0.00 37.90 3.16
3100 6541 7.043656 CCGTTTCTTTCCTTTTTGTATGACAAC 60.044 37.037 0.00 0.00 37.90 3.32
3101 6542 6.975772 CCGTTTCTTTCCTTTTTGTATGACAA 59.024 34.615 0.00 0.00 36.11 3.18
3102 6543 6.095720 ACCGTTTCTTTCCTTTTTGTATGACA 59.904 34.615 0.00 0.00 0.00 3.58
3103 6544 6.500910 ACCGTTTCTTTCCTTTTTGTATGAC 58.499 36.000 0.00 0.00 0.00 3.06
3104 6545 6.238814 GGACCGTTTCTTTCCTTTTTGTATGA 60.239 38.462 0.00 0.00 0.00 2.15
3105 6546 5.918576 GGACCGTTTCTTTCCTTTTTGTATG 59.081 40.000 0.00 0.00 0.00 2.39
3106 6547 5.831525 AGGACCGTTTCTTTCCTTTTTGTAT 59.168 36.000 0.00 0.00 36.24 2.29
3107 6548 5.066764 CAGGACCGTTTCTTTCCTTTTTGTA 59.933 40.000 0.00 0.00 37.69 2.41
3108 6549 4.021229 AGGACCGTTTCTTTCCTTTTTGT 58.979 39.130 0.00 0.00 36.24 2.83
3109 6550 4.097286 TCAGGACCGTTTCTTTCCTTTTTG 59.903 41.667 0.00 0.00 37.69 2.44
3110 6551 4.097437 GTCAGGACCGTTTCTTTCCTTTTT 59.903 41.667 0.00 0.00 37.69 1.94
3111 6552 3.630769 GTCAGGACCGTTTCTTTCCTTTT 59.369 43.478 0.00 0.00 37.69 2.27
3112 6553 3.211865 GTCAGGACCGTTTCTTTCCTTT 58.788 45.455 0.00 0.00 37.69 3.11
3113 6554 2.486727 GGTCAGGACCGTTTCTTTCCTT 60.487 50.000 2.15 0.00 42.29 3.36
3114 6555 1.071857 GGTCAGGACCGTTTCTTTCCT 59.928 52.381 2.15 0.00 42.29 3.36
3115 6556 1.520494 GGTCAGGACCGTTTCTTTCC 58.480 55.000 2.15 0.00 42.29 3.13
3126 6567 0.108186 TGTGCGATGATGGTCAGGAC 60.108 55.000 0.00 0.00 0.00 3.85
3127 6568 0.832626 ATGTGCGATGATGGTCAGGA 59.167 50.000 0.00 0.00 0.00 3.86
3128 6569 0.942252 CATGTGCGATGATGGTCAGG 59.058 55.000 0.00 0.00 0.00 3.86
3129 6570 0.942252 CCATGTGCGATGATGGTCAG 59.058 55.000 0.00 0.00 35.33 3.51
3130 6571 1.096967 GCCATGTGCGATGATGGTCA 61.097 55.000 0.00 0.00 41.22 4.02
3131 6572 1.650912 GCCATGTGCGATGATGGTC 59.349 57.895 0.00 0.00 41.22 4.02
3132 6573 3.831883 GCCATGTGCGATGATGGT 58.168 55.556 0.00 0.00 41.22 3.55
3141 6582 2.665008 TAGGATCCTGCGCCATGTGC 62.665 60.000 25.28 0.46 39.75 4.57
3142 6583 0.882042 GTAGGATCCTGCGCCATGTG 60.882 60.000 25.28 0.00 0.00 3.21
3143 6584 1.447643 GTAGGATCCTGCGCCATGT 59.552 57.895 25.28 0.00 0.00 3.21
3144 6585 1.302033 GGTAGGATCCTGCGCCATG 60.302 63.158 25.28 0.00 0.00 3.66
3145 6586 2.520536 GGGTAGGATCCTGCGCCAT 61.521 63.158 29.39 4.23 36.06 4.40
3146 6587 3.161450 GGGTAGGATCCTGCGCCA 61.161 66.667 29.39 6.36 36.06 5.69
3148 6589 3.942439 GGGGGTAGGATCCTGCGC 61.942 72.222 30.96 30.96 39.95 6.09
3149 6590 3.616721 CGGGGGTAGGATCCTGCG 61.617 72.222 25.28 6.30 0.00 5.18
3150 6591 1.536662 ATCGGGGGTAGGATCCTGC 60.537 63.158 25.28 22.96 0.00 4.85
3151 6592 0.178932 TGATCGGGGGTAGGATCCTG 60.179 60.000 25.28 6.34 38.60 3.86
3152 6593 0.793617 ATGATCGGGGGTAGGATCCT 59.206 55.000 20.48 20.48 38.60 3.24
3153 6594 2.500504 GTTATGATCGGGGGTAGGATCC 59.499 54.545 2.48 2.48 38.60 3.36
3154 6595 2.500504 GGTTATGATCGGGGGTAGGATC 59.499 54.545 0.00 0.00 39.56 3.36
3155 6596 2.547990 GGTTATGATCGGGGGTAGGAT 58.452 52.381 0.00 0.00 0.00 3.24
3156 6597 1.824444 CGGTTATGATCGGGGGTAGGA 60.824 57.143 0.00 0.00 0.00 2.94
3157 6598 0.606604 CGGTTATGATCGGGGGTAGG 59.393 60.000 0.00 0.00 0.00 3.18
3158 6599 0.037605 GCGGTTATGATCGGGGGTAG 60.038 60.000 0.00 0.00 0.00 3.18
3159 6600 1.474332 GGCGGTTATGATCGGGGGTA 61.474 60.000 0.00 0.00 0.00 3.69
3160 6601 2.814835 GGCGGTTATGATCGGGGGT 61.815 63.158 0.00 0.00 0.00 4.95
3161 6602 2.032071 GGCGGTTATGATCGGGGG 59.968 66.667 0.00 0.00 0.00 5.40
3162 6603 2.032071 GGGCGGTTATGATCGGGG 59.968 66.667 0.00 0.00 0.00 5.73
3163 6604 1.301716 CTGGGCGGTTATGATCGGG 60.302 63.158 0.00 0.00 0.00 5.14
3164 6605 1.961277 GCTGGGCGGTTATGATCGG 60.961 63.158 0.00 0.00 0.00 4.18
3165 6606 1.227527 TGCTGGGCGGTTATGATCG 60.228 57.895 0.00 0.00 0.00 3.69
3166 6607 0.463654 TGTGCTGGGCGGTTATGATC 60.464 55.000 0.00 0.00 0.00 2.92
3167 6608 0.183492 ATGTGCTGGGCGGTTATGAT 59.817 50.000 0.00 0.00 0.00 2.45
3168 6609 0.747644 CATGTGCTGGGCGGTTATGA 60.748 55.000 0.00 0.00 0.00 2.15
3169 6610 1.031571 ACATGTGCTGGGCGGTTATG 61.032 55.000 0.00 0.00 0.00 1.90
3170 6611 0.323360 AACATGTGCTGGGCGGTTAT 60.323 50.000 0.00 0.00 0.00 1.89
3171 6612 1.074072 AACATGTGCTGGGCGGTTA 59.926 52.632 0.00 0.00 0.00 2.85
3172 6613 2.203480 AACATGTGCTGGGCGGTT 60.203 55.556 0.00 0.00 0.00 4.44
3173 6614 2.985282 CAACATGTGCTGGGCGGT 60.985 61.111 0.00 0.00 0.00 5.68
3174 6615 2.985282 ACAACATGTGCTGGGCGG 60.985 61.111 0.00 0.00 0.00 6.13
3175 6616 2.256158 CACAACATGTGCTGGGCG 59.744 61.111 0.00 0.00 41.89 6.13
3182 6623 4.798387 CATGAATCATGAGCACAACATGTG 59.202 41.667 17.76 6.13 45.86 3.21
3183 6624 4.703093 TCATGAATCATGAGCACAACATGT 59.297 37.500 20.85 0.00 44.60 3.21
3184 6625 5.243426 TCATGAATCATGAGCACAACATG 57.757 39.130 20.85 10.02 44.60 3.21
3234 6675 7.620880 AGCACTTACAATCTATTCAACACCTA 58.379 34.615 0.00 0.00 0.00 3.08
3319 6760 0.036164 TGTGGTGCCCATGTAGTCAC 59.964 55.000 0.00 0.00 35.28 3.67
3334 6775 3.119708 GCAATAAGTCCAAGCTTCTGTGG 60.120 47.826 0.00 0.00 36.13 4.17
3362 6803 1.965935 TGGTCAATGGTGTGTGAGTG 58.034 50.000 0.00 0.00 0.00 3.51
3494 7157 3.552478 GGACGAGTAATCGGAGAAATCCC 60.552 52.174 17.70 1.46 43.58 3.85
3528 7191 2.104451 AGCCATGGTTTGAAAACATGCA 59.896 40.909 26.17 5.79 40.63 3.96
3614 7277 8.750515 TCATAGCCATGATTAATGAAACTTGA 57.249 30.769 0.00 0.00 38.72 3.02
3646 7309 3.412386 GTGCTTAAAGGTGTGTGATCCT 58.588 45.455 0.00 0.00 35.34 3.24
3654 7317 1.269448 CAATGGCGTGCTTAAAGGTGT 59.731 47.619 0.00 0.00 0.00 4.16
3699 7362 3.239449 TCGGGGCTCACTATGACATAAT 58.761 45.455 0.00 0.00 0.00 1.28
3830 7495 0.811616 CGCATAGGGACCTCAAGCAC 60.812 60.000 0.00 0.00 0.00 4.40
4065 7730 1.003580 TGAAGTGGTCCAAGATCTGCC 59.996 52.381 0.00 0.00 0.00 4.85
4074 7739 3.723772 CACATGGTGAAGTGGTCCA 57.276 52.632 0.00 0.00 35.23 4.02
4101 7766 3.436243 TGGGCGGGAGAAAACAATAAAT 58.564 40.909 0.00 0.00 0.00 1.40
4251 7916 2.311854 CCTTGGCAGGGGAGATGGT 61.312 63.158 7.96 0.00 36.36 3.55
4338 8004 1.916181 ACTACTTACCTTGGCATGCCT 59.084 47.619 35.53 19.28 36.94 4.75
4360 8026 1.879575 TGTCGATTGGGATCCTTCCT 58.120 50.000 12.58 0.00 42.20 3.36
4475 8141 0.107752 CCTCCTCCTCTGCTTTCAGC 60.108 60.000 0.00 0.00 42.82 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.