Multiple sequence alignment - TraesCS6D01G306400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G306400 chr6D 100.000 4649 0 0 1 4649 417688235 417692883 0.000000e+00 8586.0
1 TraesCS6D01G306400 chr6D 96.004 1126 37 5 2909 4027 417895879 417894755 0.000000e+00 1823.0
2 TraesCS6D01G306400 chr6D 82.946 645 52 25 4059 4649 417894763 417894123 3.190000e-146 529.0
3 TraesCS6D01G306400 chr6D 89.937 159 8 4 3930 4084 417777654 417777500 1.020000e-46 198.0
4 TraesCS6D01G306400 chr6D 89.130 138 10 2 3409 3546 417777858 417777726 2.880000e-37 167.0
5 TraesCS6D01G306400 chr6D 81.383 188 29 6 545 728 13678177 13678362 1.040000e-31 148.0
6 TraesCS6D01G306400 chr1D 93.564 1445 66 9 1434 2872 486731885 486730462 0.000000e+00 2128.0
7 TraesCS6D01G306400 chr1D 94.118 51 1 2 1361 1410 486731929 486731880 4.990000e-10 76.8
8 TraesCS6D01G306400 chr7B 91.605 1489 94 17 1361 2837 17659285 17660754 0.000000e+00 2028.0
9 TraesCS6D01G306400 chr6A 95.870 1138 41 3 2909 4040 560571871 560570734 0.000000e+00 1836.0
10 TraesCS6D01G306400 chr6A 97.244 762 21 0 2909 3670 560101645 560102406 0.000000e+00 1291.0
11 TraesCS6D01G306400 chr6A 92.910 818 43 12 547 1360 560100847 560101653 0.000000e+00 1175.0
12 TraesCS6D01G306400 chr6A 88.593 526 45 10 4045 4555 560570629 560570104 3.950000e-175 625.0
13 TraesCS6D01G306400 chr6A 86.667 315 29 5 93 405 560087120 560087423 2.070000e-88 337.0
14 TraesCS6D01G306400 chr6A 93.548 155 4 3 401 549 560100603 560100757 4.680000e-55 226.0
15 TraesCS6D01G306400 chr6A 97.143 105 3 0 4545 4649 560102403 560102507 1.330000e-40 178.0
16 TraesCS6D01G306400 chr6A 85.827 127 18 0 2793 2919 608045832 608045958 8.110000e-28 135.0
17 TraesCS6D01G306400 chr6A 83.784 111 15 3 2809 2918 593805660 593805552 8.230000e-18 102.0
18 TraesCS6D01G306400 chr6A 96.154 52 1 1 1 52 560086809 560086859 2.980000e-12 84.2
19 TraesCS6D01G306400 chr6B 96.541 665 22 1 3377 4040 626887385 626886721 0.000000e+00 1099.0
20 TraesCS6D01G306400 chr6B 85.695 741 68 22 546 1267 626313367 626314088 0.000000e+00 747.0
21 TraesCS6D01G306400 chr6B 89.903 515 42 6 4045 4555 626886651 626886143 0.000000e+00 654.0
22 TraesCS6D01G306400 chr6B 85.623 626 53 12 3943 4555 626455072 626455673 1.420000e-174 623.0
23 TraesCS6D01G306400 chr6B 93.484 399 19 2 2918 3316 626887865 626887474 1.860000e-163 586.0
24 TraesCS6D01G306400 chr6B 91.304 253 13 4 4306 4555 626587714 626587960 2.070000e-88 337.0
25 TraesCS6D01G306400 chr6B 91.878 197 16 0 3751 3947 626643122 626643318 4.580000e-70 276.0
26 TraesCS6D01G306400 chr6B 93.976 83 4 1 2059 2140 78515748 78515830 1.760000e-24 124.0
27 TraesCS6D01G306400 chr6B 86.607 112 11 2 446 557 626313113 626313220 2.270000e-23 121.0
28 TraesCS6D01G306400 chr6B 81.169 154 21 8 545 692 285533704 285533553 2.940000e-22 117.0
29 TraesCS6D01G306400 chr6B 98.000 50 0 1 1 50 626303505 626303553 8.290000e-13 86.1
30 TraesCS6D01G306400 chr3D 84.118 680 84 12 1391 2058 554353285 554352618 1.820000e-178 636.0
31 TraesCS6D01G306400 chr3D 90.698 86 8 0 2462 2547 554352624 554352539 1.060000e-21 115.0
32 TraesCS6D01G306400 chr3D 82.051 117 14 6 2796 2910 385154654 385154543 4.950000e-15 93.5
33 TraesCS6D01G306400 chr4D 89.273 289 29 2 125 413 509813172 509813458 1.230000e-95 361.0
34 TraesCS6D01G306400 chr2B 84.384 333 37 11 2135 2458 795209357 795209683 3.490000e-81 313.0
35 TraesCS6D01G306400 chr5D 83.636 220 30 3 332 549 327724044 327724259 7.890000e-48 202.0
36 TraesCS6D01G306400 chr5D 82.888 187 23 8 542 724 32158890 32159071 4.810000e-35 159.0
37 TraesCS6D01G306400 chr7A 81.768 181 26 7 552 728 701615504 701615681 1.350000e-30 145.0
38 TraesCS6D01G306400 chr7A 83.486 109 16 2 2809 2916 121612229 121612122 2.960000e-17 100.0
39 TraesCS6D01G306400 chr7A 94.118 51 2 1 678 728 698130281 698130232 4.990000e-10 76.8
40 TraesCS6D01G306400 chr7D 81.818 176 26 5 551 722 2230688 2230515 4.850000e-30 143.0
41 TraesCS6D01G306400 chr7D 95.745 47 1 1 678 724 605946556 605946511 1.790000e-09 75.0
42 TraesCS6D01G306400 chr1B 84.000 150 19 5 547 692 600981470 600981322 6.270000e-29 139.0
43 TraesCS6D01G306400 chr1B 83.516 91 13 2 826 915 84954855 84954766 2.980000e-12 84.2
44 TraesCS6D01G306400 chr3A 78.307 189 32 8 545 728 232268618 232268434 3.800000e-21 113.0
45 TraesCS6D01G306400 chr1A 83.471 121 18 2 2793 2912 490318263 490318382 1.370000e-20 111.0
46 TraesCS6D01G306400 chr5A 83.186 113 18 1 2801 2912 554642535 554642647 8.230000e-18 102.0
47 TraesCS6D01G306400 chr2D 81.746 126 20 3 2793 2917 617551944 617551821 8.230000e-18 102.0
48 TraesCS6D01G306400 chr2A 80.769 104 18 1 2809 2912 683537962 683537861 3.860000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G306400 chr6D 417688235 417692883 4648 False 8586.000000 8586 100.000000 1 4649 1 chr6D.!!$F2 4648
1 TraesCS6D01G306400 chr6D 417894123 417895879 1756 True 1176.000000 1823 89.475000 2909 4649 2 chr6D.!!$R2 1740
2 TraesCS6D01G306400 chr1D 486730462 486731929 1467 True 1102.400000 2128 93.841000 1361 2872 2 chr1D.!!$R1 1511
3 TraesCS6D01G306400 chr7B 17659285 17660754 1469 False 2028.000000 2028 91.605000 1361 2837 1 chr7B.!!$F1 1476
4 TraesCS6D01G306400 chr6A 560570104 560571871 1767 True 1230.500000 1836 92.231500 2909 4555 2 chr6A.!!$R2 1646
5 TraesCS6D01G306400 chr6A 560100603 560102507 1904 False 717.500000 1291 95.211250 401 4649 4 chr6A.!!$F3 4248
6 TraesCS6D01G306400 chr6A 560086809 560087423 614 False 210.600000 337 91.410500 1 405 2 chr6A.!!$F2 404
7 TraesCS6D01G306400 chr6B 626886143 626887865 1722 True 779.666667 1099 93.309333 2918 4555 3 chr6B.!!$R2 1637
8 TraesCS6D01G306400 chr6B 626455072 626455673 601 False 623.000000 623 85.623000 3943 4555 1 chr6B.!!$F3 612
9 TraesCS6D01G306400 chr6B 626313113 626314088 975 False 434.000000 747 86.151000 446 1267 2 chr6B.!!$F6 821
10 TraesCS6D01G306400 chr3D 554352539 554353285 746 True 375.500000 636 87.408000 1391 2547 2 chr3D.!!$R2 1156

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 1055 0.735978 CCACTGAACGCACATCGCTA 60.736 55.0 0.00 0.00 43.23 4.26 F
808 1209 1.155889 CGCCACTTGTTGCAGTATGA 58.844 50.0 0.00 0.00 39.69 2.15 F
1656 2088 0.908180 TCCCCGTTCTTCCCCTTCTC 60.908 60.0 0.00 0.00 0.00 2.87 F
2469 2920 0.533491 TTAGACCCGAACATGTCCGG 59.467 55.0 17.75 17.75 44.94 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 1972 0.389757 GATAGAGGAACCGGGACAGC 59.610 60.000 6.32 0.00 0.00 4.40 R
2419 2870 0.610174 TCTTGCTCTCACGCTGGAAT 59.390 50.000 0.00 0.00 0.00 3.01 R
2618 3073 1.003839 TCCGACAACCAGATGGCAC 60.004 57.895 0.00 0.00 39.32 5.01 R
4276 4924 0.455972 CCAAAATAAGTGCCGCGTGG 60.456 55.000 11.67 11.67 38.77 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 3.687102 TCGTGTACACCGCCAGGG 61.687 66.667 20.11 4.53 43.47 4.45
48 49 1.017387 CGCCAGGGCTATTTCTTGTC 58.983 55.000 8.91 0.00 39.32 3.18
52 53 3.367395 GCCAGGGCTATTTCTTGTCAAAC 60.367 47.826 2.30 0.00 38.26 2.93
53 54 4.082125 CCAGGGCTATTTCTTGTCAAACT 58.918 43.478 0.00 0.00 0.00 2.66
54 55 4.524328 CCAGGGCTATTTCTTGTCAAACTT 59.476 41.667 0.00 0.00 0.00 2.66
55 56 5.011023 CCAGGGCTATTTCTTGTCAAACTTT 59.989 40.000 0.00 0.00 0.00 2.66
94 95 5.549742 AAGAATTCCTTGTCAATTGGCAA 57.450 34.783 23.25 23.25 37.29 4.52
119 350 2.231716 GGGTAGCCCAAAAATCAGGT 57.768 50.000 0.00 0.00 44.65 4.00
120 351 1.824852 GGGTAGCCCAAAAATCAGGTG 59.175 52.381 0.00 0.00 44.65 4.00
121 352 2.525368 GGTAGCCCAAAAATCAGGTGT 58.475 47.619 0.00 0.00 0.00 4.16
122 353 2.492088 GGTAGCCCAAAAATCAGGTGTC 59.508 50.000 0.00 0.00 0.00 3.67
146 378 5.385509 TTTCTTTTTGCGAGGGAAATAGG 57.614 39.130 0.00 0.00 0.00 2.57
157 389 7.747690 TGCGAGGGAAATAGGGTATTTTATTA 58.252 34.615 0.00 0.00 38.42 0.98
181 413 7.962995 ACAAGATCAGAGAGTTACAATCCTA 57.037 36.000 0.00 0.00 0.00 2.94
183 415 8.816894 ACAAGATCAGAGAGTTACAATCCTAAA 58.183 33.333 0.00 0.00 0.00 1.85
187 419 9.436957 GATCAGAGAGTTACAATCCTAAACAAA 57.563 33.333 0.00 0.00 0.00 2.83
192 424 8.834749 AGAGTTACAATCCTAAACAAAGAGTC 57.165 34.615 0.00 0.00 0.00 3.36
203 435 7.720515 TCCTAAACAAAGAGTCCGGAAATAAAA 59.279 33.333 5.23 0.00 0.00 1.52
204 436 8.354426 CCTAAACAAAGAGTCCGGAAATAAAAA 58.646 33.333 5.23 0.00 0.00 1.94
205 437 9.908152 CTAAACAAAGAGTCCGGAAATAAAAAT 57.092 29.630 5.23 0.00 0.00 1.82
206 438 8.587952 AAACAAAGAGTCCGGAAATAAAAATG 57.412 30.769 5.23 0.73 0.00 2.32
207 439 6.687604 ACAAAGAGTCCGGAAATAAAAATGG 58.312 36.000 5.23 0.00 0.00 3.16
208 440 5.914898 AAGAGTCCGGAAATAAAAATGGG 57.085 39.130 5.23 0.00 0.00 4.00
209 441 4.278310 AGAGTCCGGAAATAAAAATGGGG 58.722 43.478 5.23 0.00 0.00 4.96
210 442 4.017867 AGAGTCCGGAAATAAAAATGGGGA 60.018 41.667 5.23 0.00 0.00 4.81
211 443 4.878968 AGTCCGGAAATAAAAATGGGGAT 58.121 39.130 5.23 0.00 0.00 3.85
212 444 5.277250 AGTCCGGAAATAAAAATGGGGATT 58.723 37.500 5.23 0.00 0.00 3.01
213 445 5.128663 AGTCCGGAAATAAAAATGGGGATTG 59.871 40.000 5.23 0.00 0.00 2.67
214 446 4.407296 TCCGGAAATAAAAATGGGGATTGG 59.593 41.667 0.00 0.00 0.00 3.16
215 447 4.163268 CCGGAAATAAAAATGGGGATTGGT 59.837 41.667 0.00 0.00 0.00 3.67
216 448 5.338789 CCGGAAATAAAAATGGGGATTGGTT 60.339 40.000 0.00 0.00 0.00 3.67
217 449 6.127026 CCGGAAATAAAAATGGGGATTGGTTA 60.127 38.462 0.00 0.00 0.00 2.85
218 450 7.331791 CGGAAATAAAAATGGGGATTGGTTAA 58.668 34.615 0.00 0.00 0.00 2.01
219 451 7.494298 CGGAAATAAAAATGGGGATTGGTTAAG 59.506 37.037 0.00 0.00 0.00 1.85
220 452 7.282224 GGAAATAAAAATGGGGATTGGTTAAGC 59.718 37.037 0.00 0.00 0.00 3.09
221 453 4.568072 AAAAATGGGGATTGGTTAAGCC 57.432 40.909 1.51 0.00 41.67 4.35
222 454 2.938428 AATGGGGATTGGTTAAGCCA 57.062 45.000 1.51 0.00 44.20 4.75
229 461 4.839262 TGGTTAAGCCAGCATGCA 57.161 50.000 21.98 0.00 43.61 3.96
230 462 2.570365 TGGTTAAGCCAGCATGCAG 58.430 52.632 21.98 12.49 43.61 4.41
231 463 0.966875 TGGTTAAGCCAGCATGCAGG 60.967 55.000 23.95 23.95 43.61 4.85
232 464 1.669999 GGTTAAGCCAGCATGCAGGG 61.670 60.000 28.20 24.26 37.17 4.45
236 468 2.203451 GCCAGCATGCAGGGCTAT 60.203 61.111 33.62 6.83 44.32 2.97
237 469 2.266627 GCCAGCATGCAGGGCTATC 61.267 63.158 33.62 15.00 44.32 2.08
238 470 1.602888 CCAGCATGCAGGGCTATCC 60.603 63.158 20.90 0.00 40.23 2.59
254 486 5.463154 GGCTATCCCCAGATCTATCATAGT 58.537 45.833 0.00 0.00 33.67 2.12
255 487 5.902431 GGCTATCCCCAGATCTATCATAGTT 59.098 44.000 0.00 0.00 33.67 2.24
256 488 6.385467 GGCTATCCCCAGATCTATCATAGTTT 59.615 42.308 0.00 0.00 33.67 2.66
257 489 7.271511 GCTATCCCCAGATCTATCATAGTTTG 58.728 42.308 0.00 0.00 33.67 2.93
258 490 5.489792 TCCCCAGATCTATCATAGTTTGC 57.510 43.478 0.00 0.00 0.00 3.68
259 491 5.158141 TCCCCAGATCTATCATAGTTTGCT 58.842 41.667 0.00 0.00 0.00 3.91
260 492 6.322931 TCCCCAGATCTATCATAGTTTGCTA 58.677 40.000 0.00 0.00 0.00 3.49
261 493 6.787458 TCCCCAGATCTATCATAGTTTGCTAA 59.213 38.462 0.00 0.00 0.00 3.09
262 494 7.038729 TCCCCAGATCTATCATAGTTTGCTAAG 60.039 40.741 0.00 0.00 0.00 2.18
263 495 6.593382 CCCAGATCTATCATAGTTTGCTAAGC 59.407 42.308 0.00 0.00 0.00 3.09
264 496 7.385267 CCAGATCTATCATAGTTTGCTAAGCT 58.615 38.462 0.00 0.00 0.00 3.74
265 497 8.526978 CCAGATCTATCATAGTTTGCTAAGCTA 58.473 37.037 0.00 0.00 0.00 3.32
268 500 9.868277 GATCTATCATAGTTTGCTAAGCTATGT 57.132 33.333 20.79 14.97 41.44 2.29
269 501 9.650539 ATCTATCATAGTTTGCTAAGCTATGTG 57.349 33.333 20.79 15.66 41.44 3.21
270 502 5.991328 TCATAGTTTGCTAAGCTATGTGC 57.009 39.130 20.79 0.00 41.44 4.57
271 503 5.427378 TCATAGTTTGCTAAGCTATGTGCA 58.573 37.500 20.79 0.00 45.94 4.57
272 504 5.879777 TCATAGTTTGCTAAGCTATGTGCAA 59.120 36.000 20.79 10.22 45.94 4.08
273 505 4.425577 AGTTTGCTAAGCTATGTGCAAC 57.574 40.909 12.82 9.53 43.74 4.17
274 506 3.191371 AGTTTGCTAAGCTATGTGCAACC 59.809 43.478 12.82 8.14 43.74 3.77
275 507 1.750193 TGCTAAGCTATGTGCAACCC 58.250 50.000 0.00 0.00 45.94 4.11
276 508 1.025041 GCTAAGCTATGTGCAACCCC 58.975 55.000 0.00 0.00 45.94 4.95
277 509 1.408822 GCTAAGCTATGTGCAACCCCT 60.409 52.381 0.00 0.00 45.94 4.79
278 510 2.158813 GCTAAGCTATGTGCAACCCCTA 60.159 50.000 0.00 0.00 45.94 3.53
279 511 3.496870 GCTAAGCTATGTGCAACCCCTAT 60.497 47.826 0.00 0.00 45.94 2.57
280 512 3.669939 AAGCTATGTGCAACCCCTATT 57.330 42.857 0.00 0.00 45.94 1.73
281 513 3.214696 AGCTATGTGCAACCCCTATTC 57.785 47.619 0.00 0.00 45.94 1.75
282 514 2.780010 AGCTATGTGCAACCCCTATTCT 59.220 45.455 0.00 0.00 45.94 2.40
283 515 2.880890 GCTATGTGCAACCCCTATTCTG 59.119 50.000 0.00 0.00 42.31 3.02
284 516 3.685550 GCTATGTGCAACCCCTATTCTGT 60.686 47.826 0.00 0.00 42.31 3.41
285 517 2.969821 TGTGCAACCCCTATTCTGTT 57.030 45.000 0.00 0.00 34.36 3.16
286 518 2.790433 TGTGCAACCCCTATTCTGTTC 58.210 47.619 0.00 0.00 34.36 3.18
287 519 2.107378 TGTGCAACCCCTATTCTGTTCA 59.893 45.455 0.00 0.00 34.36 3.18
288 520 2.488153 GTGCAACCCCTATTCTGTTCAC 59.512 50.000 0.00 0.00 0.00 3.18
289 521 2.107378 TGCAACCCCTATTCTGTTCACA 59.893 45.455 0.00 0.00 0.00 3.58
290 522 3.153919 GCAACCCCTATTCTGTTCACAA 58.846 45.455 0.00 0.00 0.00 3.33
291 523 3.191371 GCAACCCCTATTCTGTTCACAAG 59.809 47.826 0.00 0.00 0.00 3.16
292 524 4.651778 CAACCCCTATTCTGTTCACAAGA 58.348 43.478 0.00 0.00 0.00 3.02
293 525 4.993705 ACCCCTATTCTGTTCACAAGAA 57.006 40.909 0.00 0.00 0.00 2.52
294 526 5.319043 ACCCCTATTCTGTTCACAAGAAA 57.681 39.130 0.00 0.00 35.08 2.52
295 527 5.070685 ACCCCTATTCTGTTCACAAGAAAC 58.929 41.667 0.00 0.00 35.08 2.78
296 528 5.163088 ACCCCTATTCTGTTCACAAGAAACT 60.163 40.000 0.00 0.00 35.08 2.66
297 529 5.770162 CCCCTATTCTGTTCACAAGAAACTT 59.230 40.000 0.00 0.00 35.08 2.66
298 530 6.265422 CCCCTATTCTGTTCACAAGAAACTTT 59.735 38.462 0.00 0.00 35.08 2.66
299 531 7.201911 CCCCTATTCTGTTCACAAGAAACTTTT 60.202 37.037 0.00 0.00 35.08 2.27
300 532 8.846211 CCCTATTCTGTTCACAAGAAACTTTTA 58.154 33.333 0.00 0.00 35.08 1.52
301 533 9.665264 CCTATTCTGTTCACAAGAAACTTTTAC 57.335 33.333 0.00 0.00 35.08 2.01
302 534 9.665264 CTATTCTGTTCACAAGAAACTTTTACC 57.335 33.333 0.00 0.00 35.08 2.85
303 535 6.114221 TCTGTTCACAAGAAACTTTTACCG 57.886 37.500 0.00 0.00 35.08 4.02
304 536 5.065474 TCTGTTCACAAGAAACTTTTACCGG 59.935 40.000 0.00 0.00 35.08 5.28
305 537 4.942483 TGTTCACAAGAAACTTTTACCGGA 59.058 37.500 9.46 0.00 35.08 5.14
306 538 5.415077 TGTTCACAAGAAACTTTTACCGGAA 59.585 36.000 9.46 0.00 35.08 4.30
307 539 5.488645 TCACAAGAAACTTTTACCGGAAC 57.511 39.130 9.46 0.00 0.00 3.62
308 540 4.942483 TCACAAGAAACTTTTACCGGAACA 59.058 37.500 9.46 0.00 0.00 3.18
309 541 5.415077 TCACAAGAAACTTTTACCGGAACAA 59.585 36.000 9.46 0.00 0.00 2.83
310 542 6.072064 TCACAAGAAACTTTTACCGGAACAAA 60.072 34.615 9.46 2.06 0.00 2.83
311 543 6.034150 CACAAGAAACTTTTACCGGAACAAAC 59.966 38.462 9.46 0.00 0.00 2.93
312 544 5.900865 AGAAACTTTTACCGGAACAAACA 57.099 34.783 9.46 0.00 0.00 2.83
313 545 5.643664 AGAAACTTTTACCGGAACAAACAC 58.356 37.500 9.46 0.00 0.00 3.32
314 546 4.374843 AACTTTTACCGGAACAAACACC 57.625 40.909 9.46 0.00 0.00 4.16
315 547 3.623703 ACTTTTACCGGAACAAACACCT 58.376 40.909 9.46 0.00 0.00 4.00
316 548 4.018490 ACTTTTACCGGAACAAACACCTT 58.982 39.130 9.46 0.00 0.00 3.50
317 549 5.192176 ACTTTTACCGGAACAAACACCTTA 58.808 37.500 9.46 0.00 0.00 2.69
318 550 5.829391 ACTTTTACCGGAACAAACACCTTAT 59.171 36.000 9.46 0.00 0.00 1.73
319 551 6.321945 ACTTTTACCGGAACAAACACCTTATT 59.678 34.615 9.46 0.00 0.00 1.40
320 552 7.501892 ACTTTTACCGGAACAAACACCTTATTA 59.498 33.333 9.46 0.00 0.00 0.98
321 553 7.999450 TTTACCGGAACAAACACCTTATTAT 57.001 32.000 9.46 0.00 0.00 1.28
322 554 7.999450 TTACCGGAACAAACACCTTATTATT 57.001 32.000 9.46 0.00 0.00 1.40
323 555 6.505044 ACCGGAACAAACACCTTATTATTC 57.495 37.500 9.46 0.00 0.00 1.75
324 556 6.005198 ACCGGAACAAACACCTTATTATTCA 58.995 36.000 9.46 0.00 0.00 2.57
325 557 6.661805 ACCGGAACAAACACCTTATTATTCAT 59.338 34.615 9.46 0.00 0.00 2.57
326 558 7.177744 ACCGGAACAAACACCTTATTATTCATT 59.822 33.333 9.46 0.00 0.00 2.57
327 559 8.679100 CCGGAACAAACACCTTATTATTCATTA 58.321 33.333 0.00 0.00 0.00 1.90
345 577 7.873719 TTCATTAAATCTTTATTCTCCGCCA 57.126 32.000 0.00 0.00 0.00 5.69
346 578 7.873719 TCATTAAATCTTTATTCTCCGCCAA 57.126 32.000 0.00 0.00 0.00 4.52
347 579 7.930217 TCATTAAATCTTTATTCTCCGCCAAG 58.070 34.615 0.00 0.00 0.00 3.61
348 580 7.773224 TCATTAAATCTTTATTCTCCGCCAAGA 59.227 33.333 0.00 0.00 0.00 3.02
349 581 7.553881 TTAAATCTTTATTCTCCGCCAAGAG 57.446 36.000 0.00 0.00 35.04 2.85
350 582 3.543680 TCTTTATTCTCCGCCAAGAGG 57.456 47.619 0.00 0.00 34.46 3.69
351 583 2.838202 TCTTTATTCTCCGCCAAGAGGT 59.162 45.455 0.00 0.00 37.19 3.85
352 584 2.691409 TTATTCTCCGCCAAGAGGTG 57.309 50.000 0.00 0.00 45.25 4.00
361 593 2.717639 GCCAAGAGGTGACCATATGT 57.282 50.000 3.63 0.00 37.19 2.29
362 594 3.004752 GCCAAGAGGTGACCATATGTT 57.995 47.619 3.63 0.00 37.19 2.71
363 595 2.684881 GCCAAGAGGTGACCATATGTTG 59.315 50.000 3.63 0.00 37.19 3.33
364 596 3.622206 GCCAAGAGGTGACCATATGTTGA 60.622 47.826 3.63 0.00 37.19 3.18
365 597 3.941483 CCAAGAGGTGACCATATGTTGAC 59.059 47.826 3.63 0.00 0.00 3.18
366 598 4.323792 CCAAGAGGTGACCATATGTTGACT 60.324 45.833 3.63 0.00 0.00 3.41
367 599 5.248640 CAAGAGGTGACCATATGTTGACTT 58.751 41.667 3.63 0.00 0.00 3.01
368 600 4.836825 AGAGGTGACCATATGTTGACTTG 58.163 43.478 3.63 0.00 0.00 3.16
369 601 4.287067 AGAGGTGACCATATGTTGACTTGT 59.713 41.667 3.63 0.00 0.00 3.16
370 602 4.579869 AGGTGACCATATGTTGACTTGTC 58.420 43.478 3.63 0.87 0.00 3.18
371 603 4.287067 AGGTGACCATATGTTGACTTGTCT 59.713 41.667 3.63 0.00 0.00 3.41
372 604 4.393062 GGTGACCATATGTTGACTTGTCTG 59.607 45.833 0.00 0.00 0.00 3.51
373 605 4.393062 GTGACCATATGTTGACTTGTCTGG 59.607 45.833 1.24 3.18 0.00 3.86
374 606 4.285775 TGACCATATGTTGACTTGTCTGGA 59.714 41.667 1.24 0.00 0.00 3.86
375 607 4.836825 ACCATATGTTGACTTGTCTGGAG 58.163 43.478 1.24 0.00 0.00 3.86
376 608 4.532126 ACCATATGTTGACTTGTCTGGAGA 59.468 41.667 1.24 0.00 0.00 3.71
377 609 4.872691 CCATATGTTGACTTGTCTGGAGAC 59.127 45.833 1.24 0.00 44.97 3.36
378 610 2.910688 TGTTGACTTGTCTGGAGACC 57.089 50.000 4.34 0.00 44.15 3.85
379 611 1.416401 TGTTGACTTGTCTGGAGACCC 59.584 52.381 4.34 0.00 44.15 4.46
380 612 1.416401 GTTGACTTGTCTGGAGACCCA 59.584 52.381 4.34 0.00 44.15 4.51
381 613 2.030027 TGACTTGTCTGGAGACCCAT 57.970 50.000 4.34 0.00 44.15 4.00
382 614 2.338809 TGACTTGTCTGGAGACCCATT 58.661 47.619 4.34 0.00 44.15 3.16
383 615 3.516586 TGACTTGTCTGGAGACCCATTA 58.483 45.455 4.34 0.00 44.15 1.90
384 616 3.515502 TGACTTGTCTGGAGACCCATTAG 59.484 47.826 4.34 0.00 44.15 1.73
385 617 2.237392 ACTTGTCTGGAGACCCATTAGC 59.763 50.000 4.34 0.00 44.15 3.09
386 618 1.951209 TGTCTGGAGACCCATTAGCA 58.049 50.000 4.34 0.00 44.15 3.49
387 619 2.265367 TGTCTGGAGACCCATTAGCAA 58.735 47.619 4.34 0.00 44.15 3.91
388 620 2.237143 TGTCTGGAGACCCATTAGCAAG 59.763 50.000 4.34 0.00 44.15 4.01
389 621 2.237392 GTCTGGAGACCCATTAGCAAGT 59.763 50.000 0.00 0.00 42.59 3.16
390 622 2.237143 TCTGGAGACCCATTAGCAAGTG 59.763 50.000 0.00 0.00 42.59 3.16
391 623 1.340017 TGGAGACCCATTAGCAAGTGC 60.340 52.381 0.00 0.00 37.58 4.40
392 624 4.884772 TGGAGACCCATTAGCAAGTGCG 62.885 54.545 0.00 0.00 41.26 5.34
483 717 5.630121 TCCCTCCATAATCGCATGTATTTT 58.370 37.500 0.00 0.00 0.00 1.82
540 778 3.487376 CGATATGCCGCAAACAAGACAAT 60.487 43.478 0.00 0.00 0.00 2.71
598 996 6.817140 CACATCATCTTGAGATTGAGAAGTCA 59.183 38.462 0.90 0.00 31.21 3.41
646 1045 3.059982 CTCCTCCCACTGAACGCA 58.940 61.111 0.00 0.00 0.00 5.24
647 1046 1.374758 CTCCTCCCACTGAACGCAC 60.375 63.158 0.00 0.00 0.00 5.34
654 1055 0.735978 CCACTGAACGCACATCGCTA 60.736 55.000 0.00 0.00 43.23 4.26
808 1209 1.155889 CGCCACTTGTTGCAGTATGA 58.844 50.000 0.00 0.00 39.69 2.15
898 1302 7.148540 CCATTTCATTGTTCAATTTCTCGCATT 60.149 33.333 0.00 0.00 0.00 3.56
1037 1454 1.698506 ACTGGAAAAATGCGGAACCA 58.301 45.000 0.00 0.00 0.00 3.67
1131 1548 3.957260 CACAGTTGTGCCTCTCGG 58.043 61.111 0.00 0.00 39.39 4.63
1222 1641 9.313118 TCTTTTCTTTTTGGAAAGCATAACTTC 57.687 29.630 0.00 0.00 41.63 3.01
1231 1650 7.499321 TGGAAAGCATAACTTCTTTTTACGA 57.501 32.000 0.00 0.00 37.75 3.43
1301 1720 2.415491 GCATAACCTTTTCGGGAAGCAC 60.415 50.000 0.00 0.00 36.97 4.40
1314 1733 2.359848 GGGAAGCACGGTTGTACTTTTT 59.640 45.455 0.00 0.00 31.75 1.94
1359 1778 8.898983 GCAAATTGCAAGCAATATTTTGTTAT 57.101 26.923 22.72 5.88 44.86 1.89
1418 1838 6.597280 GCAAAGTCTAGATTTGACTCCTCAAT 59.403 38.462 21.69 0.00 43.16 2.57
1428 1848 7.890127 AGATTTGACTCCTCAATTATGAAACCA 59.110 33.333 0.00 0.00 36.26 3.67
1430 1850 5.500234 TGACTCCTCAATTATGAAACCAGG 58.500 41.667 0.00 0.00 34.49 4.45
1431 1851 5.014123 TGACTCCTCAATTATGAAACCAGGT 59.986 40.000 0.00 0.00 34.49 4.00
1451 1871 6.998074 CCAGGTAATTTGCATCCTCAACTATA 59.002 38.462 0.00 0.00 0.00 1.31
1507 1927 6.042093 TCTGATCTGGTTTTAGTGTTGACTCT 59.958 38.462 0.00 0.00 33.21 3.24
1517 1937 1.404035 GTGTTGACTCTGCCGGTTTTT 59.596 47.619 1.90 0.00 0.00 1.94
1582 2002 1.214062 CCTCTATCTCGCGGATGCC 59.786 63.158 17.04 0.00 38.08 4.40
1629 2061 4.971125 GCGCCGCCCTCCTGTATC 62.971 72.222 0.00 0.00 0.00 2.24
1656 2088 0.908180 TCCCCGTTCTTCCCCTTCTC 60.908 60.000 0.00 0.00 0.00 2.87
1705 2137 2.032681 ACAACCCAGCTCGCTTCC 59.967 61.111 0.00 0.00 0.00 3.46
1861 2293 3.134127 GCATTGCACCCTCGACCC 61.134 66.667 3.15 0.00 0.00 4.46
2001 2433 2.051518 CAGCACTCCTCCGAGCTCT 61.052 63.158 12.85 0.00 40.03 4.09
2084 2516 2.240493 ATAAGCCACGGTATGAGTGC 57.760 50.000 0.00 0.00 38.22 4.40
2177 2609 3.192230 CGTGTGTGGCGTGTGTGT 61.192 61.111 0.00 0.00 0.00 3.72
2309 2760 4.801914 GCCTGGGTATAAAATCCGTAGACC 60.802 50.000 0.00 0.00 32.98 3.85
2419 2870 4.160329 TGCTCCTCTTTCTTCTTCCTACA 58.840 43.478 0.00 0.00 0.00 2.74
2469 2920 0.533491 TTAGACCCGAACATGTCCGG 59.467 55.000 17.75 17.75 44.94 5.14
2485 2940 2.665185 GGCCGCTTCGACTGTGTT 60.665 61.111 0.00 0.00 0.00 3.32
2562 3017 1.305219 GCCAATTACCACTCGCTGCA 61.305 55.000 0.00 0.00 0.00 4.41
2597 3052 2.671963 CCAGAAGCAGCAGCAGCA 60.672 61.111 12.92 0.00 45.49 4.41
2650 3105 2.949678 CGGACTTCGTCGATGGCG 60.950 66.667 12.23 0.00 39.35 5.69
2692 3147 5.165961 TGACCACCATAAGAAGAAGAAGG 57.834 43.478 0.00 0.00 0.00 3.46
2708 3163 0.259356 AAGGTACGAGGGGAGAGAGG 59.741 60.000 0.00 0.00 0.00 3.69
2806 3261 1.306397 GGGGGAGGGACGGAACTTA 60.306 63.158 0.00 0.00 0.00 2.24
2858 3313 4.934797 TCTGGTTTCAGAATTGAGGGAT 57.065 40.909 0.00 0.00 46.08 3.85
2872 3327 9.183368 AGAATTGAGGGATCAAATTTAGACTTC 57.817 33.333 0.00 0.00 32.94 3.01
2873 3328 8.884124 AATTGAGGGATCAAATTTAGACTTCA 57.116 30.769 0.00 0.00 32.94 3.02
2874 3329 7.687941 TTGAGGGATCAAATTTAGACTTCAC 57.312 36.000 0.00 0.00 0.00 3.18
2875 3330 6.180472 TGAGGGATCAAATTTAGACTTCACC 58.820 40.000 0.00 0.00 0.00 4.02
2876 3331 5.510430 AGGGATCAAATTTAGACTTCACCC 58.490 41.667 0.00 0.00 0.00 4.61
2877 3332 5.015178 AGGGATCAAATTTAGACTTCACCCA 59.985 40.000 0.00 0.00 35.43 4.51
2878 3333 5.714806 GGGATCAAATTTAGACTTCACCCAA 59.285 40.000 0.00 0.00 33.48 4.12
2879 3334 6.210584 GGGATCAAATTTAGACTTCACCCAAA 59.789 38.462 0.00 0.00 33.48 3.28
2880 3335 7.315890 GGATCAAATTTAGACTTCACCCAAAG 58.684 38.462 0.00 0.00 0.00 2.77
2881 3336 7.039714 GGATCAAATTTAGACTTCACCCAAAGT 60.040 37.037 0.00 0.00 42.10 2.66
2882 3337 7.654022 TCAAATTTAGACTTCACCCAAAGTT 57.346 32.000 0.00 0.00 39.55 2.66
2883 3338 7.712797 TCAAATTTAGACTTCACCCAAAGTTC 58.287 34.615 0.00 0.00 39.55 3.01
2884 3339 7.340743 TCAAATTTAGACTTCACCCAAAGTTCA 59.659 33.333 0.00 0.00 39.55 3.18
2885 3340 6.884280 ATTTAGACTTCACCCAAAGTTCAG 57.116 37.500 0.00 0.00 39.55 3.02
2886 3341 3.214696 AGACTTCACCCAAAGTTCAGG 57.785 47.619 0.00 0.00 39.55 3.86
2898 3353 6.840780 CCAAAGTTCAGGGATGAAAAGTAT 57.159 37.500 0.00 0.00 0.00 2.12
2899 3354 7.938140 CCAAAGTTCAGGGATGAAAAGTATA 57.062 36.000 0.00 0.00 0.00 1.47
2900 3355 7.762382 CCAAAGTTCAGGGATGAAAAGTATAC 58.238 38.462 0.00 0.00 0.00 1.47
2901 3356 7.611855 CCAAAGTTCAGGGATGAAAAGTATACT 59.388 37.037 0.00 0.00 0.00 2.12
2902 3357 9.014297 CAAAGTTCAGGGATGAAAAGTATACTT 57.986 33.333 12.50 12.50 37.91 2.24
3013 3468 4.684485 GCAGTTATATGGAGTCTTGGCTGT 60.684 45.833 0.00 0.00 0.00 4.40
3100 3555 5.297029 GTCACCTTAGTTTTCTGAAACAGCT 59.703 40.000 1.58 4.62 46.01 4.24
3131 3586 9.893305 AGTTTTAAATACTGCAAGACATGTAAC 57.107 29.630 0.00 0.00 37.43 2.50
3374 3886 0.682292 GACCCATTTCCCCGCAAAAA 59.318 50.000 0.00 0.00 0.00 1.94
3550 4069 1.202533 CGTTATCAGAAGATGCCCGGT 60.203 52.381 0.00 0.00 35.67 5.28
3721 4240 4.974399 AGTCTTTCGTCCTTTTCCTCATT 58.026 39.130 0.00 0.00 0.00 2.57
3730 4249 6.030228 CGTCCTTTTCCTCATTAAGAAATGC 58.970 40.000 0.00 0.00 41.96 3.56
4006 4525 4.955811 TTCAGTTGAAAGGTAGCTCTGA 57.044 40.909 6.26 6.26 0.00 3.27
4040 4560 9.747293 GTGAGATATGTTTACTTAAGAGGTACC 57.253 37.037 10.09 2.73 0.00 3.34
4041 4561 9.710818 TGAGATATGTTTACTTAAGAGGTACCT 57.289 33.333 16.26 16.26 0.00 3.08
4111 4731 5.936956 GTCTCAGAGTGTGGAATGAAAGATT 59.063 40.000 0.00 0.00 0.00 2.40
4113 4733 7.604164 GTCTCAGAGTGTGGAATGAAAGATTTA 59.396 37.037 0.00 0.00 0.00 1.40
4122 4742 5.476599 TGGAATGAAAGATTTACAGTGTGGG 59.523 40.000 5.88 0.00 0.00 4.61
4131 4751 0.323629 TACAGTGTGGGGTGCTAAGC 59.676 55.000 5.88 0.00 0.00 3.09
4151 4771 1.258982 CGCTCACACAACAGTTCACTC 59.741 52.381 0.00 0.00 0.00 3.51
4153 4773 2.939103 GCTCACACAACAGTTCACTCTT 59.061 45.455 0.00 0.00 0.00 2.85
4184 4807 6.927381 GTGTTTACATACCTGTACAGTTCACT 59.073 38.462 21.18 3.81 37.58 3.41
4186 4809 8.640651 TGTTTACATACCTGTACAGTTCACTTA 58.359 33.333 21.18 3.16 37.58 2.24
4226 4849 6.957631 ACTGATCCTATTGTCCATGTTGTTA 58.042 36.000 0.00 0.00 0.00 2.41
4245 4868 1.558233 AACTACTCCCTCCGTTCCAG 58.442 55.000 0.00 0.00 0.00 3.86
4250 4873 2.389715 ACTCCCTCCGTTCCAGAATAG 58.610 52.381 0.00 0.00 0.00 1.73
4265 4913 5.070981 TCCAGAATAGAATAAGTGCCTGAGG 59.929 44.000 0.00 0.00 0.00 3.86
4276 4924 0.887387 TGCCTGAGGTAAAACCACGC 60.887 55.000 0.00 0.00 41.95 5.34
4298 4951 1.816224 ACGCGGCACTTATTTTGGAAT 59.184 42.857 12.47 0.00 0.00 3.01
4306 4959 4.142160 GCACTTATTTTGGAATGGAGGGAC 60.142 45.833 0.00 0.00 0.00 4.46
4391 5044 3.769844 TCTACCACAGAAGGTCCAGAATC 59.230 47.826 0.00 0.00 42.06 2.52
4417 5073 7.752695 TCAGTGTCTATGTCATATATAGCACG 58.247 38.462 0.00 0.00 38.58 5.34
4430 5086 3.704843 GCACGAGATGCGCATACA 58.295 55.556 25.40 0.00 46.55 2.29
4565 5259 6.425721 CAGTTTTCACGATACCCAAAGAACTA 59.574 38.462 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 6.355747 TGCCAATTGACAAGGAATTCTTTTT 58.644 32.000 7.12 0.00 32.41 1.94
70 71 5.927819 TGCCAATTGACAAGGAATTCTTTT 58.072 33.333 7.12 0.00 32.41 2.27
71 72 5.549742 TGCCAATTGACAAGGAATTCTTT 57.450 34.783 7.12 0.35 32.41 2.52
72 73 5.549742 TTGCCAATTGACAAGGAATTCTT 57.450 34.783 7.12 0.00 35.79 2.52
73 74 5.544650 CTTTGCCAATTGACAAGGAATTCT 58.455 37.500 10.50 0.00 0.00 2.40
79 80 2.825861 AGCTTTGCCAATTGACAAGG 57.174 45.000 11.50 11.50 0.00 3.61
84 85 2.603075 ACCCTAGCTTTGCCAATTGA 57.397 45.000 7.12 0.00 0.00 2.57
113 344 4.338118 TCGCAAAAAGAAAAGACACCTGAT 59.662 37.500 0.00 0.00 0.00 2.90
114 345 3.692101 TCGCAAAAAGAAAAGACACCTGA 59.308 39.130 0.00 0.00 0.00 3.86
115 346 4.027572 TCGCAAAAAGAAAAGACACCTG 57.972 40.909 0.00 0.00 0.00 4.00
116 347 3.066760 CCTCGCAAAAAGAAAAGACACCT 59.933 43.478 0.00 0.00 0.00 4.00
118 349 3.066203 TCCCTCGCAAAAAGAAAAGACAC 59.934 43.478 0.00 0.00 0.00 3.67
119 350 3.283751 TCCCTCGCAAAAAGAAAAGACA 58.716 40.909 0.00 0.00 0.00 3.41
120 351 3.982576 TCCCTCGCAAAAAGAAAAGAC 57.017 42.857 0.00 0.00 0.00 3.01
121 352 4.993029 TTTCCCTCGCAAAAAGAAAAGA 57.007 36.364 0.00 0.00 0.00 2.52
122 353 5.863935 CCTATTTCCCTCGCAAAAAGAAAAG 59.136 40.000 0.00 0.00 30.86 2.27
157 389 6.865834 AGGATTGTAACTCTCTGATCTTGT 57.134 37.500 0.00 0.00 0.00 3.16
166 398 8.834749 ACTCTTTGTTTAGGATTGTAACTCTC 57.165 34.615 0.00 0.00 0.00 3.20
170 402 6.128363 CCGGACTCTTTGTTTAGGATTGTAAC 60.128 42.308 0.00 0.00 0.00 2.50
181 413 7.655732 CCATTTTTATTTCCGGACTCTTTGTTT 59.344 33.333 1.83 0.00 0.00 2.83
183 415 6.295067 CCCATTTTTATTTCCGGACTCTTTGT 60.295 38.462 1.83 0.00 0.00 2.83
187 419 4.017867 TCCCCATTTTTATTTCCGGACTCT 60.018 41.667 1.83 0.00 0.00 3.24
192 424 4.163268 ACCAATCCCCATTTTTATTTCCGG 59.837 41.667 0.00 0.00 0.00 5.14
213 445 1.669999 CCCTGCATGCTGGCTTAACC 61.670 60.000 32.16 0.00 39.84 2.85
214 446 1.811860 CCCTGCATGCTGGCTTAAC 59.188 57.895 32.16 0.00 34.26 2.01
215 447 2.053865 GCCCTGCATGCTGGCTTAA 61.054 57.895 32.16 4.78 42.01 1.85
216 448 2.440796 GCCCTGCATGCTGGCTTA 60.441 61.111 32.16 5.54 42.01 3.09
219 451 2.203451 ATAGCCCTGCATGCTGGC 60.203 61.111 32.01 32.01 45.70 4.85
220 452 1.602888 GGATAGCCCTGCATGCTGG 60.603 63.158 30.99 30.99 39.91 4.85
221 453 4.076244 GGATAGCCCTGCATGCTG 57.924 61.111 20.33 18.55 39.91 4.41
231 463 5.463154 ACTATGATAGATCTGGGGATAGCC 58.537 45.833 5.18 0.00 31.46 3.93
232 464 7.271511 CAAACTATGATAGATCTGGGGATAGC 58.728 42.308 5.18 0.00 31.46 2.97
233 465 7.125507 AGCAAACTATGATAGATCTGGGGATAG 59.874 40.741 5.18 8.13 31.46 2.08
234 466 6.962311 AGCAAACTATGATAGATCTGGGGATA 59.038 38.462 5.18 0.00 31.46 2.59
235 467 5.789575 AGCAAACTATGATAGATCTGGGGAT 59.210 40.000 5.18 0.00 34.45 3.85
236 468 5.158141 AGCAAACTATGATAGATCTGGGGA 58.842 41.667 5.18 0.00 0.00 4.81
237 469 5.495926 AGCAAACTATGATAGATCTGGGG 57.504 43.478 5.18 0.00 0.00 4.96
238 470 6.593382 GCTTAGCAAACTATGATAGATCTGGG 59.407 42.308 5.18 0.00 30.29 4.45
239 471 7.385267 AGCTTAGCAAACTATGATAGATCTGG 58.615 38.462 7.07 0.00 30.29 3.86
242 474 9.868277 ACATAGCTTAGCAAACTATGATAGATC 57.132 33.333 15.11 0.00 43.86 2.75
243 475 9.650539 CACATAGCTTAGCAAACTATGATAGAT 57.349 33.333 15.11 0.00 43.86 1.98
244 476 7.600375 GCACATAGCTTAGCAAACTATGATAGA 59.400 37.037 15.11 0.00 43.86 1.98
245 477 7.386025 TGCACATAGCTTAGCAAACTATGATAG 59.614 37.037 15.11 0.00 43.86 2.08
246 478 7.216494 TGCACATAGCTTAGCAAACTATGATA 58.784 34.615 15.11 2.35 43.86 2.15
247 479 6.057533 TGCACATAGCTTAGCAAACTATGAT 58.942 36.000 15.11 1.40 43.86 2.45
248 480 5.427378 TGCACATAGCTTAGCAAACTATGA 58.573 37.500 15.11 0.00 43.86 2.15
249 481 5.739752 TGCACATAGCTTAGCAAACTATG 57.260 39.130 7.07 8.20 45.65 2.23
255 487 2.091541 GGGTTGCACATAGCTTAGCAA 58.908 47.619 7.07 9.71 45.94 3.91
256 488 1.681780 GGGGTTGCACATAGCTTAGCA 60.682 52.381 7.07 0.00 45.94 3.49
257 489 1.025041 GGGGTTGCACATAGCTTAGC 58.975 55.000 0.00 0.00 45.94 3.09
258 490 2.717639 AGGGGTTGCACATAGCTTAG 57.282 50.000 0.00 0.00 45.94 2.18
259 491 4.412199 AGAATAGGGGTTGCACATAGCTTA 59.588 41.667 0.00 0.00 45.94 3.09
260 492 3.203040 AGAATAGGGGTTGCACATAGCTT 59.797 43.478 0.00 0.00 45.94 3.74
261 493 2.780010 AGAATAGGGGTTGCACATAGCT 59.220 45.455 0.00 0.00 45.94 3.32
262 494 2.880890 CAGAATAGGGGTTGCACATAGC 59.119 50.000 0.00 0.00 45.96 2.97
263 495 4.156455 ACAGAATAGGGGTTGCACATAG 57.844 45.455 0.00 0.00 0.00 2.23
264 496 4.018870 TGAACAGAATAGGGGTTGCACATA 60.019 41.667 0.00 0.00 0.00 2.29
265 497 3.245229 TGAACAGAATAGGGGTTGCACAT 60.245 43.478 0.00 0.00 0.00 3.21
266 498 2.107378 TGAACAGAATAGGGGTTGCACA 59.893 45.455 0.00 0.00 0.00 4.57
267 499 2.488153 GTGAACAGAATAGGGGTTGCAC 59.512 50.000 0.00 0.00 0.00 4.57
268 500 2.107378 TGTGAACAGAATAGGGGTTGCA 59.893 45.455 0.00 0.00 0.00 4.08
269 501 2.790433 TGTGAACAGAATAGGGGTTGC 58.210 47.619 0.00 0.00 0.00 4.17
270 502 4.651778 TCTTGTGAACAGAATAGGGGTTG 58.348 43.478 0.00 0.00 0.00 3.77
271 503 4.993705 TCTTGTGAACAGAATAGGGGTT 57.006 40.909 0.00 0.00 0.00 4.11
272 504 4.993705 TTCTTGTGAACAGAATAGGGGT 57.006 40.909 0.00 0.00 0.00 4.95
273 505 5.316987 AGTTTCTTGTGAACAGAATAGGGG 58.683 41.667 0.00 0.00 31.02 4.79
274 506 6.884280 AAGTTTCTTGTGAACAGAATAGGG 57.116 37.500 0.00 0.00 31.02 3.53
275 507 9.665264 GTAAAAGTTTCTTGTGAACAGAATAGG 57.335 33.333 0.00 0.00 31.02 2.57
276 508 9.665264 GGTAAAAGTTTCTTGTGAACAGAATAG 57.335 33.333 0.00 0.00 31.02 1.73
277 509 8.339714 CGGTAAAAGTTTCTTGTGAACAGAATA 58.660 33.333 0.00 0.00 31.02 1.75
278 510 7.193595 CGGTAAAAGTTTCTTGTGAACAGAAT 58.806 34.615 0.00 0.00 31.02 2.40
279 511 6.403855 CCGGTAAAAGTTTCTTGTGAACAGAA 60.404 38.462 0.00 0.00 31.02 3.02
280 512 5.065474 CCGGTAAAAGTTTCTTGTGAACAGA 59.935 40.000 0.00 0.00 31.02 3.41
281 513 5.065474 TCCGGTAAAAGTTTCTTGTGAACAG 59.935 40.000 0.00 0.00 31.02 3.16
282 514 4.942483 TCCGGTAAAAGTTTCTTGTGAACA 59.058 37.500 0.00 0.00 31.02 3.18
283 515 5.488645 TCCGGTAAAAGTTTCTTGTGAAC 57.511 39.130 0.00 0.00 31.02 3.18
284 516 5.415077 TGTTCCGGTAAAAGTTTCTTGTGAA 59.585 36.000 0.00 0.00 0.00 3.18
285 517 4.942483 TGTTCCGGTAAAAGTTTCTTGTGA 59.058 37.500 0.00 0.00 0.00 3.58
286 518 5.238006 TGTTCCGGTAAAAGTTTCTTGTG 57.762 39.130 0.00 0.00 0.00 3.33
287 519 5.900865 TTGTTCCGGTAAAAGTTTCTTGT 57.099 34.783 0.00 0.00 0.00 3.16
288 520 6.034150 GTGTTTGTTCCGGTAAAAGTTTCTTG 59.966 38.462 0.00 0.00 0.00 3.02
289 521 6.094719 GTGTTTGTTCCGGTAAAAGTTTCTT 58.905 36.000 0.00 0.00 0.00 2.52
290 522 5.393352 GGTGTTTGTTCCGGTAAAAGTTTCT 60.393 40.000 0.00 0.00 0.00 2.52
291 523 4.799949 GGTGTTTGTTCCGGTAAAAGTTTC 59.200 41.667 0.00 0.00 0.00 2.78
292 524 4.463539 AGGTGTTTGTTCCGGTAAAAGTTT 59.536 37.500 0.00 0.00 0.00 2.66
293 525 4.018490 AGGTGTTTGTTCCGGTAAAAGTT 58.982 39.130 0.00 0.00 0.00 2.66
294 526 3.623703 AGGTGTTTGTTCCGGTAAAAGT 58.376 40.909 0.00 0.00 0.00 2.66
295 527 4.642445 AAGGTGTTTGTTCCGGTAAAAG 57.358 40.909 0.00 0.00 0.00 2.27
296 528 6.712179 AATAAGGTGTTTGTTCCGGTAAAA 57.288 33.333 0.00 0.00 0.00 1.52
297 529 7.999450 ATAATAAGGTGTTTGTTCCGGTAAA 57.001 32.000 0.00 0.00 0.00 2.01
298 530 7.664731 TGAATAATAAGGTGTTTGTTCCGGTAA 59.335 33.333 0.00 0.00 0.00 2.85
299 531 7.166851 TGAATAATAAGGTGTTTGTTCCGGTA 58.833 34.615 0.00 0.00 0.00 4.02
300 532 6.005198 TGAATAATAAGGTGTTTGTTCCGGT 58.995 36.000 0.00 0.00 0.00 5.28
301 533 6.503589 TGAATAATAAGGTGTTTGTTCCGG 57.496 37.500 0.00 0.00 0.00 5.14
319 551 9.567776 TGGCGGAGAATAAAGATTTAATGAATA 57.432 29.630 0.00 0.00 0.00 1.75
320 552 8.463930 TGGCGGAGAATAAAGATTTAATGAAT 57.536 30.769 0.00 0.00 0.00 2.57
321 553 7.873719 TGGCGGAGAATAAAGATTTAATGAA 57.126 32.000 0.00 0.00 0.00 2.57
322 554 7.773224 TCTTGGCGGAGAATAAAGATTTAATGA 59.227 33.333 0.00 0.00 0.00 2.57
323 555 7.930217 TCTTGGCGGAGAATAAAGATTTAATG 58.070 34.615 0.00 0.00 0.00 1.90
324 556 7.229506 CCTCTTGGCGGAGAATAAAGATTTAAT 59.770 37.037 8.54 0.00 35.52 1.40
325 557 6.542370 CCTCTTGGCGGAGAATAAAGATTTAA 59.458 38.462 8.54 0.00 35.52 1.52
326 558 6.055588 CCTCTTGGCGGAGAATAAAGATTTA 58.944 40.000 8.54 0.00 35.52 1.40
327 559 4.884164 CCTCTTGGCGGAGAATAAAGATTT 59.116 41.667 8.54 0.00 35.52 2.17
328 560 4.080299 ACCTCTTGGCGGAGAATAAAGATT 60.080 41.667 8.54 0.00 35.52 2.40
329 561 3.456277 ACCTCTTGGCGGAGAATAAAGAT 59.544 43.478 8.54 0.00 35.52 2.40
330 562 2.838202 ACCTCTTGGCGGAGAATAAAGA 59.162 45.455 8.54 0.00 35.52 2.52
331 563 2.939103 CACCTCTTGGCGGAGAATAAAG 59.061 50.000 8.54 0.00 35.52 1.85
332 564 2.569853 TCACCTCTTGGCGGAGAATAAA 59.430 45.455 8.54 0.00 35.52 1.40
333 565 2.093658 GTCACCTCTTGGCGGAGAATAA 60.094 50.000 8.54 0.00 35.52 1.40
334 566 1.480954 GTCACCTCTTGGCGGAGAATA 59.519 52.381 8.54 0.00 35.52 1.75
335 567 0.250513 GTCACCTCTTGGCGGAGAAT 59.749 55.000 8.54 0.00 35.52 2.40
336 568 1.671742 GTCACCTCTTGGCGGAGAA 59.328 57.895 8.54 0.00 35.52 2.87
337 569 2.283529 GGTCACCTCTTGGCGGAGA 61.284 63.158 8.54 0.10 35.52 3.71
338 570 1.903877 ATGGTCACCTCTTGGCGGAG 61.904 60.000 0.00 1.06 36.63 4.63
339 571 0.616395 TATGGTCACCTCTTGGCGGA 60.616 55.000 0.00 0.00 36.63 5.54
340 572 0.469917 ATATGGTCACCTCTTGGCGG 59.530 55.000 0.00 0.00 36.63 6.13
341 573 1.134401 ACATATGGTCACCTCTTGGCG 60.134 52.381 7.80 0.00 36.63 5.69
342 574 2.684881 CAACATATGGTCACCTCTTGGC 59.315 50.000 7.80 0.00 36.63 4.52
343 575 3.941483 GTCAACATATGGTCACCTCTTGG 59.059 47.826 7.80 0.00 39.83 3.61
344 576 4.836825 AGTCAACATATGGTCACCTCTTG 58.163 43.478 7.80 0.11 0.00 3.02
345 577 5.221925 ACAAGTCAACATATGGTCACCTCTT 60.222 40.000 7.80 0.00 0.00 2.85
346 578 4.287067 ACAAGTCAACATATGGTCACCTCT 59.713 41.667 7.80 0.00 0.00 3.69
347 579 4.579869 ACAAGTCAACATATGGTCACCTC 58.420 43.478 7.80 0.00 0.00 3.85
348 580 4.287067 AGACAAGTCAACATATGGTCACCT 59.713 41.667 7.80 0.00 0.00 4.00
349 581 4.393062 CAGACAAGTCAACATATGGTCACC 59.607 45.833 7.80 0.00 0.00 4.02
350 582 4.393062 CCAGACAAGTCAACATATGGTCAC 59.607 45.833 7.80 0.00 0.00 3.67
351 583 4.285775 TCCAGACAAGTCAACATATGGTCA 59.714 41.667 7.80 0.00 0.00 4.02
352 584 4.832248 TCCAGACAAGTCAACATATGGTC 58.168 43.478 7.80 2.99 0.00 4.02
353 585 4.532126 TCTCCAGACAAGTCAACATATGGT 59.468 41.667 7.80 0.00 0.00 3.55
354 586 4.872691 GTCTCCAGACAAGTCAACATATGG 59.127 45.833 7.80 0.72 44.18 2.74
355 587 4.872691 GGTCTCCAGACAAGTCAACATATG 59.127 45.833 8.95 0.00 46.47 1.78
356 588 4.080863 GGGTCTCCAGACAAGTCAACATAT 60.081 45.833 8.95 0.00 46.47 1.78
357 589 3.260884 GGGTCTCCAGACAAGTCAACATA 59.739 47.826 8.95 0.00 46.47 2.29
358 590 2.039084 GGGTCTCCAGACAAGTCAACAT 59.961 50.000 8.95 0.00 46.47 2.71
359 591 1.416401 GGGTCTCCAGACAAGTCAACA 59.584 52.381 8.95 0.00 46.47 3.33
360 592 1.416401 TGGGTCTCCAGACAAGTCAAC 59.584 52.381 8.95 0.00 46.47 3.18
361 593 1.801242 TGGGTCTCCAGACAAGTCAA 58.199 50.000 8.95 0.00 46.47 3.18
362 594 3.550692 TGGGTCTCCAGACAAGTCA 57.449 52.632 8.95 0.00 46.47 3.41
369 601 5.507176 GCACTTGCTAATGGGTCTCCAGA 62.507 52.174 0.00 0.00 41.56 3.86
370 602 3.260888 GCACTTGCTAATGGGTCTCCAG 61.261 54.545 0.00 0.00 41.56 3.86
371 603 1.340017 GCACTTGCTAATGGGTCTCCA 60.340 52.381 0.00 0.00 42.09 3.86
372 604 1.383523 GCACTTGCTAATGGGTCTCC 58.616 55.000 0.00 0.00 38.21 3.71
373 605 1.009829 CGCACTTGCTAATGGGTCTC 58.990 55.000 0.00 0.00 39.32 3.36
374 606 0.392998 CCGCACTTGCTAATGGGTCT 60.393 55.000 0.00 0.00 39.32 3.85
375 607 1.993369 GCCGCACTTGCTAATGGGTC 61.993 60.000 0.00 0.00 39.32 4.46
376 608 2.046285 GCCGCACTTGCTAATGGGT 61.046 57.895 0.00 0.00 39.32 4.51
377 609 1.594194 TTGCCGCACTTGCTAATGGG 61.594 55.000 0.00 0.00 39.32 4.00
378 610 0.179156 CTTGCCGCACTTGCTAATGG 60.179 55.000 0.00 0.00 39.32 3.16
379 611 0.804364 TCTTGCCGCACTTGCTAATG 59.196 50.000 0.00 0.00 39.32 1.90
380 612 1.089920 CTCTTGCCGCACTTGCTAAT 58.910 50.000 0.00 0.00 39.32 1.73
381 613 1.577328 GCTCTTGCCGCACTTGCTAA 61.577 55.000 0.00 0.00 39.32 3.09
382 614 2.034879 GCTCTTGCCGCACTTGCTA 61.035 57.895 0.00 0.00 39.32 3.49
383 615 3.360340 GCTCTTGCCGCACTTGCT 61.360 61.111 0.00 0.00 39.32 3.91
384 616 3.198236 TTGCTCTTGCCGCACTTGC 62.198 57.895 0.00 0.00 37.07 4.01
385 617 1.370900 GTTGCTCTTGCCGCACTTG 60.371 57.895 0.00 0.00 37.07 3.16
386 618 2.555547 GGTTGCTCTTGCCGCACTT 61.556 57.895 0.00 0.00 37.07 3.16
387 619 2.980233 GGTTGCTCTTGCCGCACT 60.980 61.111 0.00 0.00 37.07 4.40
388 620 4.389576 CGGTTGCTCTTGCCGCAC 62.390 66.667 0.00 0.00 38.99 5.34
392 624 2.146073 ATTGTGCGGTTGCTCTTGCC 62.146 55.000 0.00 0.00 43.34 4.52
393 625 0.730494 GATTGTGCGGTTGCTCTTGC 60.730 55.000 0.00 0.00 43.34 4.01
394 626 0.592637 TGATTGTGCGGTTGCTCTTG 59.407 50.000 0.00 0.00 43.34 3.02
395 627 1.317613 TTGATTGTGCGGTTGCTCTT 58.682 45.000 0.00 0.00 43.34 2.85
396 628 1.538047 ATTGATTGTGCGGTTGCTCT 58.462 45.000 0.00 0.00 43.34 4.09
397 629 1.987770 CAATTGATTGTGCGGTTGCTC 59.012 47.619 0.00 0.00 43.34 4.26
398 630 1.612950 TCAATTGATTGTGCGGTTGCT 59.387 42.857 3.38 0.00 38.05 3.91
399 631 2.063156 TCAATTGATTGTGCGGTTGC 57.937 45.000 3.38 0.00 38.84 4.17
483 717 3.181329 TGAAATGAGGCCCTAGAAGTGA 58.819 45.455 0.00 0.00 0.00 3.41
540 778 4.138290 CTCTCGAGGTGCTTATAGGAGAA 58.862 47.826 13.56 0.00 0.00 2.87
853 1256 8.300286 TGAAATGGTTTATAATTTGAACGCTCA 58.700 29.630 0.00 0.00 0.00 4.26
869 1272 7.307337 GCGAGAAATTGAACAATGAAATGGTTT 60.307 33.333 0.69 0.00 41.57 3.27
898 1302 8.928270 GAAACCTATTACTTTCGAAGATCTCA 57.072 34.615 0.00 0.00 35.04 3.27
950 1366 7.650104 GGTTTTCATTTGTTTCGATTCCTGTTA 59.350 33.333 0.00 0.00 0.00 2.41
952 1368 5.983118 GGTTTTCATTTGTTTCGATTCCTGT 59.017 36.000 0.00 0.00 0.00 4.00
1153 1570 3.260884 ACGAGAAGCAACTCCCAAATAGA 59.739 43.478 0.00 0.00 33.83 1.98
1301 1720 2.359531 TGCTTCCCAAAAAGTACAACCG 59.640 45.455 0.00 0.00 0.00 4.44
1314 1733 3.244875 TGCTAGATCAAACTTGCTTCCCA 60.245 43.478 0.00 0.00 38.85 4.37
1358 1777 9.981460 AAGGGACAGAAAATATACTTTTCTCAT 57.019 29.630 14.67 9.53 44.30 2.90
1410 1830 8.525290 AATTACCTGGTTTCATAATTGAGGAG 57.475 34.615 3.84 0.00 32.27 3.69
1418 1838 6.667414 AGGATGCAAATTACCTGGTTTCATAA 59.333 34.615 3.84 0.00 0.00 1.90
1428 1848 8.034313 TCTATAGTTGAGGATGCAAATTACCT 57.966 34.615 0.00 0.00 35.29 3.08
1430 1850 9.937175 GTTTCTATAGTTGAGGATGCAAATTAC 57.063 33.333 0.00 0.00 0.00 1.89
1431 1851 9.120538 GGTTTCTATAGTTGAGGATGCAAATTA 57.879 33.333 0.00 0.00 0.00 1.40
1451 1871 3.203716 GGACGAACTTTGTCTGGTTTCT 58.796 45.455 8.75 0.00 36.58 2.52
1517 1937 1.373748 GCGTCAGCTTTGACCGGTA 60.374 57.895 7.34 0.00 41.01 4.02
1535 1955 4.148825 CTCGGGTCTCCCTTGCCG 62.149 72.222 3.25 0.00 42.67 5.69
1552 1972 0.389757 GATAGAGGAACCGGGACAGC 59.610 60.000 6.32 0.00 0.00 4.40
1629 2061 1.900545 GAAGAACGGGGAGGTGGAGG 61.901 65.000 0.00 0.00 0.00 4.30
1656 2088 1.075970 TGGAGTCGGGATGGAGAGG 60.076 63.158 0.00 0.00 0.00 3.69
1759 2191 2.282958 AGACGGAGGAAGGCGTGA 60.283 61.111 0.00 0.00 0.00 4.35
1813 2245 1.140134 AGGCAAAAGAGGGTAGGGCA 61.140 55.000 0.00 0.00 0.00 5.36
1846 2278 2.671070 CAGGGTCGAGGGTGCAAT 59.329 61.111 0.00 0.00 0.00 3.56
2084 2516 1.426621 GGCACACGCACATGATCAG 59.573 57.895 0.00 0.00 41.24 2.90
2140 2572 2.281070 CTCCTGGCTGTTGCACGT 60.281 61.111 0.00 0.00 41.91 4.49
2188 2620 1.586564 CTAGCTCACGCGGCAGTAC 60.587 63.158 12.47 0.00 42.32 2.73
2189 2621 2.798689 CTAGCTCACGCGGCAGTA 59.201 61.111 12.47 0.54 42.32 2.74
2190 2622 4.803426 GCTAGCTCACGCGGCAGT 62.803 66.667 12.47 0.00 42.32 4.40
2191 2623 4.801624 TGCTAGCTCACGCGGCAG 62.802 66.667 17.23 6.64 41.81 4.85
2192 2624 3.664025 ATTGCTAGCTCACGCGGCA 62.664 57.895 17.23 5.28 43.69 5.69
2193 2625 2.875786 GATTGCTAGCTCACGCGGC 61.876 63.158 17.23 3.95 42.32 6.53
2194 2626 1.227089 AGATTGCTAGCTCACGCGG 60.227 57.895 17.23 0.00 42.32 6.46
2195 2627 0.803768 ACAGATTGCTAGCTCACGCG 60.804 55.000 17.23 3.53 42.32 6.01
2196 2628 1.061711 CAACAGATTGCTAGCTCACGC 59.938 52.381 17.23 1.05 0.00 5.34
2279 2730 2.596553 TTTATACCCAGGCCGGTGCG 62.597 60.000 12.27 0.00 36.56 5.34
2285 2736 2.651382 ACGGATTTTATACCCAGGCC 57.349 50.000 0.00 0.00 0.00 5.19
2289 2740 3.243839 GCGGTCTACGGATTTTATACCCA 60.244 47.826 0.00 0.00 44.51 4.51
2309 2760 2.480555 GTTGGCAACCATCGAGCG 59.519 61.111 19.57 0.00 31.53 5.03
2419 2870 0.610174 TCTTGCTCTCACGCTGGAAT 59.390 50.000 0.00 0.00 0.00 3.01
2469 2920 2.551270 CAACACAGTCGAAGCGGC 59.449 61.111 0.00 0.00 0.00 6.53
2618 3073 1.003839 TCCGACAACCAGATGGCAC 60.004 57.895 0.00 0.00 39.32 5.01
2650 3105 5.863935 GGTCATTTTATCAAGCACCTTGTTC 59.136 40.000 5.03 0.00 41.66 3.18
2692 3147 1.682740 CTTCCTCTCTCCCCTCGTAC 58.317 60.000 0.00 0.00 0.00 3.67
2708 3163 1.065199 TGCCACCTCATCATGTCCTTC 60.065 52.381 0.00 0.00 0.00 3.46
2806 3261 4.760204 CACCTTTAACTCTTGAAACCGGAT 59.240 41.667 9.46 0.00 0.00 4.18
2849 3304 7.340487 GGTGAAGTCTAAATTTGATCCCTCAAT 59.660 37.037 0.00 0.00 40.95 2.57
2858 3313 7.340743 TGAACTTTGGGTGAAGTCTAAATTTGA 59.659 33.333 0.00 0.00 38.86 2.69
2872 3327 2.584835 TCATCCCTGAACTTTGGGTG 57.415 50.000 0.00 0.00 43.74 4.61
2873 3328 3.611025 TTTCATCCCTGAACTTTGGGT 57.389 42.857 0.00 0.00 41.05 4.51
2874 3329 3.897505 ACTTTTCATCCCTGAACTTTGGG 59.102 43.478 0.00 0.00 41.05 4.12
2875 3330 6.840780 ATACTTTTCATCCCTGAACTTTGG 57.159 37.500 0.00 0.00 41.05 3.28
2876 3331 8.567285 AGTATACTTTTCATCCCTGAACTTTG 57.433 34.615 0.00 0.00 41.05 2.77
2877 3332 9.588096 AAAGTATACTTTTCATCCCTGAACTTT 57.412 29.630 22.49 0.00 43.07 2.66
2994 3449 5.661312 ACTGTACAGCCAAGACTCCATATAA 59.339 40.000 22.90 0.00 0.00 0.98
3013 3468 3.674997 GGTCAGCATCTCCAAAACTGTA 58.325 45.455 0.00 0.00 0.00 2.74
3131 3586 4.377021 TCCAGTATACCAGCGCATTTAAG 58.623 43.478 11.47 0.00 0.00 1.85
3284 3739 7.859325 AAATAGACAACAACAATATAGCGGT 57.141 32.000 0.00 0.00 0.00 5.68
3374 3886 2.443416 GGGAATGGGTTCGCTACTTTT 58.557 47.619 0.00 0.00 42.29 2.27
3550 4069 7.083858 GCTTGAACACACTTTGCTATGAAATA 58.916 34.615 0.00 0.00 0.00 1.40
3721 4240 2.509569 TGAAAGCACCCGCATTTCTTA 58.490 42.857 0.00 0.00 42.27 2.10
3730 4249 2.393271 AGAAGAGATGAAAGCACCCG 57.607 50.000 0.00 0.00 0.00 5.28
3827 4346 5.925969 ACCTTTCCACATGCGAAATTAAAAG 59.074 36.000 8.54 0.00 0.00 2.27
4040 4560 5.047802 ACAAATCCTATCAGCCAACAACAAG 60.048 40.000 0.00 0.00 0.00 3.16
4041 4561 4.832266 ACAAATCCTATCAGCCAACAACAA 59.168 37.500 0.00 0.00 0.00 2.83
4042 4562 4.406456 ACAAATCCTATCAGCCAACAACA 58.594 39.130 0.00 0.00 0.00 3.33
4043 4563 5.391312 AACAAATCCTATCAGCCAACAAC 57.609 39.130 0.00 0.00 0.00 3.32
4111 4731 1.271163 GCTTAGCACCCCACACTGTAA 60.271 52.381 0.00 0.00 0.00 2.41
4113 4733 1.073199 GCTTAGCACCCCACACTGT 59.927 57.895 0.00 0.00 0.00 3.55
4131 4751 1.258982 GAGTGAACTGTTGTGTGAGCG 59.741 52.381 0.00 0.00 0.00 5.03
4151 4771 3.611113 CAGGTATGTAAACACGGTCGAAG 59.389 47.826 0.00 0.00 0.00 3.79
4153 4773 2.557924 ACAGGTATGTAAACACGGTCGA 59.442 45.455 0.00 0.00 38.09 4.20
4209 4832 7.280205 GGGAGTAGTTAACAACATGGACAATAG 59.720 40.741 8.61 0.00 0.00 1.73
4226 4849 1.076677 TCTGGAACGGAGGGAGTAGTT 59.923 52.381 0.00 0.00 39.80 2.24
4245 4868 8.613482 GTTTTACCTCAGGCACTTATTCTATTC 58.387 37.037 0.00 0.00 34.60 1.75
4250 4873 5.007682 TGGTTTTACCTCAGGCACTTATTC 58.992 41.667 0.00 0.00 39.58 1.75
4276 4924 0.455972 CCAAAATAAGTGCCGCGTGG 60.456 55.000 11.67 11.67 38.77 4.94
4298 4951 3.516586 TCACAGTCAAATAGTCCCTCCA 58.483 45.455 0.00 0.00 0.00 3.86
4306 4959 5.181009 TGGAGCAAGATCACAGTCAAATAG 58.819 41.667 0.00 0.00 0.00 1.73
4391 5044 7.907563 CGTGCTATATATGACATAGACACTGAG 59.092 40.741 0.98 0.00 34.46 3.35
4417 5073 2.598632 GGCCGTGTATGCGCATCTC 61.599 63.158 29.11 20.89 0.00 2.75
4430 5086 1.677576 CAAATCTGCATACATGGCCGT 59.322 47.619 0.00 0.00 0.00 5.68
4443 5099 5.585445 ACTGCAGATCTTCTAAGCAAATCTG 59.415 40.000 23.35 12.31 43.90 2.90
4599 5293 7.014038 GCATCCATGAGAACATAAGAGGAAAAT 59.986 37.037 0.00 0.00 35.09 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.