Multiple sequence alignment - TraesCS6D01G306300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G306300 chr6D 100.000 4063 0 0 1 4063 415030473 415026411 0.000000e+00 7504.0
1 TraesCS6D01G306300 chr6D 100.000 465 0 0 4306 4770 415026168 415025704 0.000000e+00 859.0
2 TraesCS6D01G306300 chr6A 94.749 4018 145 23 2 3972 560035564 560031566 0.000000e+00 6191.0
3 TraesCS6D01G306300 chr6A 95.207 459 20 2 4306 4763 560030005 560029548 0.000000e+00 725.0
4 TraesCS6D01G306300 chr6B 94.428 4020 152 28 4 3972 625782125 625778127 0.000000e+00 6117.0
5 TraesCS6D01G306300 chr6B 93.709 461 26 2 4306 4763 625776392 625775932 0.000000e+00 688.0
6 TraesCS6D01G306300 chr7D 87.255 102 13 0 2698 2799 55252731 55252832 3.020000e-22 117.0
7 TraesCS6D01G306300 chr7D 87.255 102 13 0 2698 2799 55269813 55269914 3.020000e-22 117.0
8 TraesCS6D01G306300 chr7A 86.275 102 14 0 2698 2799 59204447 59204548 1.400000e-20 111.0
9 TraesCS6D01G306300 chr3D 91.781 73 4 2 2728 2799 154180335 154180264 3.040000e-17 100.0
10 TraesCS6D01G306300 chr3B 84.615 104 12 4 2698 2799 226789214 226789315 3.040000e-17 100.0
11 TraesCS6D01G306300 chr3A 90.278 72 5 2 2728 2798 172964411 172964341 5.080000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G306300 chr6D 415025704 415030473 4769 True 4181.5 7504 100.0000 1 4770 2 chr6D.!!$R1 4769
1 TraesCS6D01G306300 chr6A 560029548 560035564 6016 True 3458.0 6191 94.9780 2 4763 2 chr6A.!!$R1 4761
2 TraesCS6D01G306300 chr6B 625775932 625782125 6193 True 3402.5 6117 94.0685 4 4763 2 chr6B.!!$R1 4759

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 267 1.730446 GCCGCTCAAGCAACTCAAATC 60.730 52.381 2.50 0.0 42.21 2.17 F
1245 1263 1.661463 ATCAAGGAAGGAGAGGCACA 58.339 50.000 0.00 0.0 0.00 4.57 F
1355 1373 1.556911 TGGAGGAGGACAAGCAATCTC 59.443 52.381 0.00 0.0 0.00 2.75 F
1436 1454 1.807573 GGGACTCGCGCAGAAGAAG 60.808 63.158 8.75 0.0 0.00 2.85 F
2615 2661 0.331278 TGAGACCGAATTTGCCCCAT 59.669 50.000 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1330 1348 0.107459 GCTTGTCCTCCTCCATCACC 60.107 60.000 0.0 0.0 0.00 4.02 R
2178 2222 0.318275 GCCTCGCTTCATCCTCGTAG 60.318 60.000 0.0 0.0 0.00 3.51 R
2428 2472 1.581934 CAAGAAGAGTGCAACGTGGA 58.418 50.000 0.0 0.0 45.86 4.02 R
3299 3347 1.780309 TGGGGTGGAAGTGATTCAACT 59.220 47.619 0.0 0.0 0.00 3.16 R
4445 6240 0.107831 TGTGAAACACCTCTTCGGGG 59.892 55.000 0.0 0.0 45.67 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 6.540189 AGTTTGACCGATTTGATGGAGAATAG 59.460 38.462 0.00 0.00 0.00 1.73
75 76 7.545965 CGGTACCAAATCAATATCACTAGATCC 59.454 40.741 13.54 0.00 35.67 3.36
148 156 6.055231 TCTTGATTAACTTGGTCAAACGTG 57.945 37.500 0.00 0.00 32.08 4.49
259 267 1.730446 GCCGCTCAAGCAACTCAAATC 60.730 52.381 2.50 0.00 42.21 2.17
288 296 7.652909 CACATGCCTTCTTATTTGAAAAGTTCA 59.347 33.333 0.00 0.00 38.04 3.18
340 351 7.997107 ATTGCATGTTGTTATATTTGCTCTG 57.003 32.000 0.00 0.00 0.00 3.35
351 362 9.624697 TGTTATATTTGCTCTGAATTTTGTGAC 57.375 29.630 0.00 0.00 0.00 3.67
417 430 2.372837 TGAACCACCAGGGGTACTAAAC 59.627 50.000 0.00 0.00 41.32 2.01
759 777 2.980233 GCACTGCACACACCCTCC 60.980 66.667 0.00 0.00 0.00 4.30
1245 1263 1.661463 ATCAAGGAAGGAGAGGCACA 58.339 50.000 0.00 0.00 0.00 4.57
1277 1295 2.490115 GTTGTTGAAGTGGTTGTGGACA 59.510 45.455 0.00 0.00 0.00 4.02
1330 1348 1.697432 TGTGGTACTCAACAAGGAGGG 59.303 52.381 0.00 0.00 39.27 4.30
1355 1373 1.556911 TGGAGGAGGACAAGCAATCTC 59.443 52.381 0.00 0.00 0.00 2.75
1410 1428 4.225340 CGACGACGAGGAGAGCGG 62.225 72.222 0.00 0.00 42.66 5.52
1435 1453 2.261671 GGGACTCGCGCAGAAGAA 59.738 61.111 8.75 0.00 0.00 2.52
1436 1454 1.807573 GGGACTCGCGCAGAAGAAG 60.808 63.158 8.75 0.00 0.00 2.85
1773 1808 5.304871 ACCTAATTAACCACTCCTAGCTAGC 59.695 44.000 15.74 6.62 0.00 3.42
1774 1809 5.304614 CCTAATTAACCACTCCTAGCTAGCA 59.695 44.000 18.83 0.00 0.00 3.49
1775 1810 5.896073 AATTAACCACTCCTAGCTAGCAT 57.104 39.130 18.83 4.67 0.00 3.79
1776 1811 6.996180 AATTAACCACTCCTAGCTAGCATA 57.004 37.500 18.83 5.65 0.00 3.14
1777 1812 7.560796 AATTAACCACTCCTAGCTAGCATAT 57.439 36.000 18.83 0.00 0.00 1.78
1778 1813 8.666129 AATTAACCACTCCTAGCTAGCATATA 57.334 34.615 18.83 0.00 0.00 0.86
1779 1814 8.846423 ATTAACCACTCCTAGCTAGCATATAT 57.154 34.615 18.83 0.00 0.00 0.86
1780 1815 9.937876 ATTAACCACTCCTAGCTAGCATATATA 57.062 33.333 18.83 0.00 0.00 0.86
1781 1816 9.937876 TTAACCACTCCTAGCTAGCATATATAT 57.062 33.333 18.83 0.00 0.00 0.86
1864 1899 6.952605 AGCTAGGCCATTATCCAATTAGTA 57.047 37.500 5.01 0.00 0.00 1.82
1865 1900 6.951971 AGCTAGGCCATTATCCAATTAGTAG 58.048 40.000 5.01 0.00 0.00 2.57
1971 2009 4.792521 ACCATCTGGATTCTAGATACGC 57.207 45.455 11.70 0.00 38.94 4.42
2003 2041 4.145876 TCGAGTGTGATTTGATTTGTGC 57.854 40.909 0.00 0.00 0.00 4.57
2151 2195 3.164977 GGCAGGGAGGGTCTAGGC 61.165 72.222 0.00 0.00 0.00 3.93
2247 2291 3.033764 GTCAGCGACGTCGGCAAA 61.034 61.111 36.13 18.08 40.23 3.68
2428 2472 0.665670 CGGCGCATCATTCTCGATCT 60.666 55.000 10.83 0.00 0.00 2.75
2534 2580 1.208165 AGAAGGTCGCCAAGGGGAAT 61.208 55.000 7.49 0.00 38.78 3.01
2603 2649 2.125912 CGGAAGCAGGTGAGACCG 60.126 66.667 0.00 0.00 44.90 4.79
2615 2661 0.331278 TGAGACCGAATTTGCCCCAT 59.669 50.000 0.00 0.00 0.00 4.00
2616 2662 1.272425 TGAGACCGAATTTGCCCCATT 60.272 47.619 0.00 0.00 0.00 3.16
3014 3062 1.063006 CAGCATGTTCGGGCATTCG 59.937 57.895 0.00 0.00 0.00 3.34
3024 3072 3.869272 GGCATTCGTCTGCGCTGG 61.869 66.667 14.70 4.50 43.23 4.85
3027 3075 4.087892 ATTCGTCTGCGCTGGCCT 62.088 61.111 13.54 0.00 38.85 5.19
3043 3091 4.127040 CTCTCAGCCAGCGACGCT 62.127 66.667 18.46 18.46 40.77 5.07
3325 3373 0.692476 TCACTTCCACCCCATGAGTG 59.308 55.000 8.44 8.44 35.44 3.51
3326 3374 0.692476 CACTTCCACCCCATGAGTGA 59.308 55.000 15.14 2.09 35.92 3.41
3327 3375 0.693049 ACTTCCACCCCATGAGTGAC 59.307 55.000 15.14 0.00 37.42 3.67
3329 3377 0.400213 TTCCACCCCATGAGTGACAC 59.600 55.000 15.14 0.00 37.42 3.67
3342 3405 4.422057 TGAGTGACACTAGGTAATTGGGA 58.578 43.478 8.41 0.00 0.00 4.37
3358 3421 1.364678 TGGGACAGGATTACAGAGGGA 59.635 52.381 0.00 0.00 0.00 4.20
3450 3513 4.383010 GGGCCTAAATTTGGTCCTGATTTG 60.383 45.833 17.88 0.00 45.46 2.32
3521 3584 4.997905 ACAACATTGATTCACTGTCTCG 57.002 40.909 9.76 5.27 0.00 4.04
3522 3585 3.748048 ACAACATTGATTCACTGTCTCGG 59.252 43.478 9.76 4.13 0.00 4.63
3591 3658 7.390718 GGGTAATCTGGGTTGCTATATTTGTAG 59.609 40.741 0.00 0.00 0.00 2.74
3675 3743 3.327757 AGAAAGGTGCAACACTATCTGGA 59.672 43.478 3.64 0.00 39.98 3.86
3731 3799 8.856153 TTTTGCATTACATGGATATATACGGT 57.144 30.769 0.00 0.00 0.00 4.83
3778 3846 3.724374 TGTCGTTTTGGACCTGTCTTAG 58.276 45.455 0.00 0.00 36.07 2.18
3814 3882 5.151389 GGATTTTGCTACAAATCGAACGTT 58.849 37.500 0.00 0.00 36.53 3.99
3850 3921 5.957910 TGGCAAATCAAACTGTTTTTACG 57.042 34.783 2.41 0.00 0.00 3.18
3876 3947 4.753516 ATTATGTTGTCACGAGGATGGA 57.246 40.909 0.00 0.00 0.00 3.41
3900 3971 1.466856 TCCTTTAGCAAGCATGGCAG 58.533 50.000 0.00 0.00 37.68 4.85
3972 4043 4.107622 CGGCAGATTTTTAGCATTCCAAG 58.892 43.478 0.00 0.00 0.00 3.61
3973 4044 4.436332 GGCAGATTTTTAGCATTCCAAGG 58.564 43.478 0.00 0.00 0.00 3.61
3974 4045 4.436332 GCAGATTTTTAGCATTCCAAGGG 58.564 43.478 0.00 0.00 0.00 3.95
3977 4048 6.466812 CAGATTTTTAGCATTCCAAGGGTTT 58.533 36.000 0.00 0.00 0.00 3.27
3978 4049 6.936335 CAGATTTTTAGCATTCCAAGGGTTTT 59.064 34.615 0.00 0.00 0.00 2.43
3980 4051 8.094548 AGATTTTTAGCATTCCAAGGGTTTTAC 58.905 33.333 0.00 0.00 0.00 2.01
3982 4053 2.167662 AGCATTCCAAGGGTTTTACCG 58.832 47.619 0.00 0.00 39.83 4.02
3983 4054 2.164338 GCATTCCAAGGGTTTTACCGA 58.836 47.619 0.00 0.00 39.83 4.69
3984 4055 2.559231 GCATTCCAAGGGTTTTACCGAA 59.441 45.455 0.00 0.00 39.83 4.30
3985 4056 3.006003 GCATTCCAAGGGTTTTACCGAAA 59.994 43.478 0.00 0.00 39.83 3.46
3986 4057 4.552355 CATTCCAAGGGTTTTACCGAAAC 58.448 43.478 0.00 0.00 45.53 2.78
3997 4068 5.202640 GTTTTACCGAAACATGTCAGACAC 58.797 41.667 5.05 0.00 45.57 3.67
3998 4069 1.497991 ACCGAAACATGTCAGACACG 58.502 50.000 5.05 0.00 0.00 4.49
3999 4070 1.202486 ACCGAAACATGTCAGACACGT 60.202 47.619 5.05 0.00 0.00 4.49
4000 4071 1.192312 CCGAAACATGTCAGACACGTG 59.808 52.381 15.48 15.48 46.32 4.49
4001 4072 2.124122 CGAAACATGTCAGACACGTGA 58.876 47.619 25.01 0.00 43.96 4.35
4002 4073 2.097396 CGAAACATGTCAGACACGTGAC 60.097 50.000 25.01 17.23 43.96 3.67
4011 4082 5.900339 GTCAGACACGTGACAAAAATCTA 57.100 39.130 25.01 0.00 45.34 1.98
4012 4083 5.905903 GTCAGACACGTGACAAAAATCTAG 58.094 41.667 25.01 7.67 45.34 2.43
4013 4084 4.447724 TCAGACACGTGACAAAAATCTAGC 59.552 41.667 25.01 0.00 0.00 3.42
4014 4085 4.449068 CAGACACGTGACAAAAATCTAGCT 59.551 41.667 25.01 0.00 0.00 3.32
4034 5601 5.615289 AGCTCTAAGCACAATATACAAGGG 58.385 41.667 1.29 0.00 45.56 3.95
4047 5614 9.027202 ACAATATACAAGGGTTTTACCGAAAAT 57.973 29.630 0.00 0.00 39.83 1.82
4399 6193 1.972795 AGCAAAACATCATGGGCAACT 59.027 42.857 0.00 0.00 0.00 3.16
4460 6255 1.064825 ACATCCCCGAAGAGGTGTTT 58.935 50.000 0.00 0.00 38.74 2.83
4591 6386 4.900635 ACTTTGTGGTTTGACTAAGCAG 57.099 40.909 1.70 0.00 44.32 4.24
4755 6553 0.039256 CCCACGGCTGACAAATTGTG 60.039 55.000 2.20 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.865385 TCCATCAAATCGGTCAAACTTAAAAAG 59.135 33.333 0.00 0.00 0.00 2.27
2 3 7.717568 TCCATCAAATCGGTCAAACTTAAAAA 58.282 30.769 0.00 0.00 0.00 1.94
33 34 6.080648 TGGTACCGTAGATGATGTTGATAC 57.919 41.667 7.57 0.00 0.00 2.24
49 50 7.545965 GGATCTAGTGATATTGATTTGGTACCG 59.454 40.741 7.57 0.00 32.19 4.02
125 133 5.818336 TCACGTTTGACCAAGTTAATCAAGA 59.182 36.000 0.00 0.00 34.04 3.02
206 214 9.461312 AAGTAATTAATGACTTGTCCAAGCATA 57.539 29.630 16.21 0.01 41.99 3.14
207 215 7.944729 AGTAATTAATGACTTGTCCAAGCAT 57.055 32.000 6.94 8.53 41.99 3.79
259 267 7.869429 ACTTTTCAAATAAGAAGGCATGTGAAG 59.131 33.333 0.00 0.00 31.64 3.02
340 351 5.597813 ACAGACTGATCGTCACAAAATTC 57.402 39.130 10.08 0.00 45.32 2.17
351 362 0.449786 AGCTGTCGACAGACTGATCG 59.550 55.000 42.03 19.52 46.59 3.69
460 477 1.444836 CCGGCCATTCAAGTTCGTAA 58.555 50.000 2.24 0.00 0.00 3.18
759 777 9.889128 ATGAATTAATGGTGAAGGGTTAATTTG 57.111 29.630 0.00 0.00 37.06 2.32
856 874 1.199859 GAACACGTACACGCCAACG 59.800 57.895 0.85 2.89 44.43 4.10
869 887 2.224548 ACCAACTTGGCTCTAGGAACAC 60.225 50.000 7.81 0.00 42.67 3.32
1245 1263 3.131046 CACTTCAACAACCTCTTTGGCTT 59.869 43.478 0.00 0.00 39.84 4.35
1311 1329 1.003233 CCCCTCCTTGTTGAGTACCAC 59.997 57.143 0.00 0.00 0.00 4.16
1330 1348 0.107459 GCTTGTCCTCCTCCATCACC 60.107 60.000 0.00 0.00 0.00 4.02
1364 1382 2.260434 GCCGTCGTTACCAGCAGA 59.740 61.111 0.00 0.00 0.00 4.26
1420 1438 1.409982 GCTCTTCTTCTGCGCGAGTC 61.410 60.000 12.10 0.00 0.00 3.36
1435 1453 1.680522 CCGCCTCTACCATGTGCTCT 61.681 60.000 0.00 0.00 0.00 4.09
1436 1454 1.227380 CCGCCTCTACCATGTGCTC 60.227 63.158 0.00 0.00 0.00 4.26
1469 1487 0.874607 GTATGGTCATGGTCGCCGTC 60.875 60.000 0.00 0.00 0.00 4.79
1520 1552 4.605640 AATTTGCTACTTGTTGCACCAT 57.394 36.364 9.16 3.12 39.05 3.55
1574 1609 8.183104 TCAACTGGAGATACAAAGATCGATAT 57.817 34.615 0.00 0.00 0.00 1.63
1864 1899 3.642901 CGCCTAGAACATGCGTACT 57.357 52.632 0.00 0.00 43.12 2.73
2003 2041 3.114616 CGGTCTCCTGTGCAAGCG 61.115 66.667 0.00 0.00 0.00 4.68
2151 2195 4.463879 CGCAGGCTGAGGGACAGG 62.464 72.222 20.86 0.00 45.82 4.00
2178 2222 0.318275 GCCTCGCTTCATCCTCGTAG 60.318 60.000 0.00 0.00 0.00 3.51
2220 2264 2.100631 GTCGCTGACAATGTCCGGG 61.101 63.158 11.24 12.79 32.80 5.73
2229 2273 3.776659 TTTGCCGACGTCGCTGACA 62.777 57.895 31.73 21.88 38.18 3.58
2428 2472 1.581934 CAAGAAGAGTGCAACGTGGA 58.418 50.000 0.00 0.00 45.86 4.02
2507 2553 2.499685 GCGACCTTCTGGCCGTAT 59.500 61.111 0.00 0.00 41.40 3.06
2534 2580 4.392166 TAGGCTCTGGGGCACGGA 62.392 66.667 3.17 0.00 43.56 4.69
2603 2649 2.883386 TGCAACAAAATGGGGCAAATTC 59.117 40.909 0.00 0.00 29.81 2.17
3014 3062 4.074526 TGAGAGGCCAGCGCAGAC 62.075 66.667 11.47 1.56 36.38 3.51
3027 3075 4.121669 GAGCGTCGCTGGCTGAGA 62.122 66.667 27.16 0.00 41.72 3.27
3043 3091 2.288025 GGCCACGGGTACTTGAGGA 61.288 63.158 0.00 0.00 0.00 3.71
3182 3230 2.840651 AGAGAACTGATTTGGGTCCGAT 59.159 45.455 0.00 0.00 0.00 4.18
3295 3343 3.306502 GGGTGGAAGTGATTCAACTACGA 60.307 47.826 0.00 0.00 0.00 3.43
3296 3344 3.000727 GGGTGGAAGTGATTCAACTACG 58.999 50.000 0.00 0.00 0.00 3.51
3299 3347 1.780309 TGGGGTGGAAGTGATTCAACT 59.220 47.619 0.00 0.00 0.00 3.16
3325 3373 3.773119 TCCTGTCCCAATTACCTAGTGTC 59.227 47.826 0.00 0.00 0.00 3.67
3326 3374 3.798515 TCCTGTCCCAATTACCTAGTGT 58.201 45.455 0.00 0.00 0.00 3.55
3327 3375 5.373812 AATCCTGTCCCAATTACCTAGTG 57.626 43.478 0.00 0.00 0.00 2.74
3329 3377 6.326583 TCTGTAATCCTGTCCCAATTACCTAG 59.673 42.308 0.00 0.00 35.81 3.02
3342 3405 4.168101 TCAAACTCCCTCTGTAATCCTGT 58.832 43.478 0.00 0.00 0.00 4.00
3358 3421 5.356751 TGCACACAACAACTCTAATCAAACT 59.643 36.000 0.00 0.00 0.00 2.66
3450 3513 6.071616 TGCAATATTCCTCCAAAACAACCTAC 60.072 38.462 0.00 0.00 0.00 3.18
3521 3584 5.045872 GCTTTGATTGGTTGAGATAATGCC 58.954 41.667 0.00 0.00 0.00 4.40
3522 3585 5.899299 AGCTTTGATTGGTTGAGATAATGC 58.101 37.500 0.00 0.00 0.00 3.56
3591 3658 2.093783 CACGAAGGACTTGGATTTACGC 59.906 50.000 1.00 0.00 0.00 4.42
3654 3721 3.674997 TCCAGATAGTGTTGCACCTTTC 58.325 45.455 0.00 0.00 34.49 2.62
3778 3846 3.631686 AGCAAAATCCAAAAAGTTTGGCC 59.368 39.130 13.79 0.00 39.38 5.36
3837 3908 8.331742 CAACATAATTTGCCGTAAAAACAGTTT 58.668 29.630 0.00 0.00 0.00 2.66
3841 3912 6.978659 TGACAACATAATTTGCCGTAAAAACA 59.021 30.769 0.00 0.00 0.00 2.83
3850 3921 3.438781 TCCTCGTGACAACATAATTTGCC 59.561 43.478 0.00 0.00 0.00 4.52
3876 3947 4.256110 GCCATGCTTGCTAAAGGAAATTT 58.744 39.130 0.00 0.00 37.29 1.82
3900 3971 5.573337 AAAAGCTGAACATAGCAAGGATC 57.427 39.130 0.00 0.00 46.07 3.36
3972 4043 3.816523 TCTGACATGTTTCGGTAAAACCC 59.183 43.478 0.00 0.00 45.58 4.11
3973 4044 4.273969 TGTCTGACATGTTTCGGTAAAACC 59.726 41.667 6.36 0.00 45.58 3.27
3974 4045 5.202640 GTGTCTGACATGTTTCGGTAAAAC 58.797 41.667 14.37 0.00 46.22 2.43
3977 4048 3.054166 CGTGTCTGACATGTTTCGGTAA 58.946 45.455 19.44 0.00 30.72 2.85
3978 4049 2.034939 ACGTGTCTGACATGTTTCGGTA 59.965 45.455 25.75 0.00 45.33 4.02
3980 4051 1.192312 CACGTGTCTGACATGTTTCGG 59.808 52.381 28.11 15.90 45.33 4.30
3982 4053 2.863740 TGTCACGTGTCTGACATGTTTC 59.136 45.455 28.11 22.81 45.33 2.78
3983 4054 2.899976 TGTCACGTGTCTGACATGTTT 58.100 42.857 28.11 9.70 45.33 2.83
3984 4055 2.595124 TGTCACGTGTCTGACATGTT 57.405 45.000 28.11 14.06 45.33 2.71
3989 4060 4.795970 AGATTTTTGTCACGTGTCTGAC 57.204 40.909 16.51 6.81 40.98 3.51
3990 4061 4.447724 GCTAGATTTTTGTCACGTGTCTGA 59.552 41.667 16.51 0.39 0.00 3.27
3992 4063 4.632153 AGCTAGATTTTTGTCACGTGTCT 58.368 39.130 16.51 11.36 0.00 3.41
3993 4064 4.686554 AGAGCTAGATTTTTGTCACGTGTC 59.313 41.667 16.51 10.98 0.00 3.67
3997 4068 5.348724 TGCTTAGAGCTAGATTTTTGTCACG 59.651 40.000 0.00 0.00 42.97 4.35
3998 4069 6.147821 TGTGCTTAGAGCTAGATTTTTGTCAC 59.852 38.462 0.00 0.00 42.97 3.67
3999 4070 6.230472 TGTGCTTAGAGCTAGATTTTTGTCA 58.770 36.000 0.00 0.00 42.97 3.58
4000 4071 6.727824 TGTGCTTAGAGCTAGATTTTTGTC 57.272 37.500 0.00 0.00 42.97 3.18
4001 4072 7.693969 ATTGTGCTTAGAGCTAGATTTTTGT 57.306 32.000 0.00 0.00 42.97 2.83
4007 4078 8.310382 CCTTGTATATTGTGCTTAGAGCTAGAT 58.690 37.037 0.00 0.00 42.97 1.98
4008 4079 7.255977 CCCTTGTATATTGTGCTTAGAGCTAGA 60.256 40.741 0.00 0.00 42.97 2.43
4009 4080 6.870965 CCCTTGTATATTGTGCTTAGAGCTAG 59.129 42.308 1.29 0.00 42.97 3.42
4011 4082 5.131142 ACCCTTGTATATTGTGCTTAGAGCT 59.869 40.000 1.29 0.00 42.97 4.09
4012 4083 5.368989 ACCCTTGTATATTGTGCTTAGAGC 58.631 41.667 0.00 0.00 42.82 4.09
4013 4084 7.865706 AAACCCTTGTATATTGTGCTTAGAG 57.134 36.000 0.00 0.00 0.00 2.43
4014 4085 9.169592 GTAAAACCCTTGTATATTGTGCTTAGA 57.830 33.333 0.00 0.00 0.00 2.10
4312 5879 1.203050 TCTTTGAAAGAAGGCTGGGGG 60.203 52.381 4.94 0.00 33.83 5.40
4445 6240 0.107831 TGTGAAACACCTCTTCGGGG 59.892 55.000 0.00 0.00 45.67 5.73
4460 6255 4.078537 CACTATGTTTTGGGTGGATGTGA 58.921 43.478 0.00 0.00 0.00 3.58
4591 6386 6.709397 ACTTAAGGAAGTGTAGTTTGGCTTAC 59.291 38.462 7.53 0.00 44.50 2.34
4692 6488 7.934457 ACTAACTTGCCTGCTATGAAATTATG 58.066 34.615 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.