Multiple sequence alignment - TraesCS6D01G305400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G305400 chr6D 100.000 3772 0 0 1 3772 414258926 414255155 0.000000e+00 6966.0
1 TraesCS6D01G305400 chr6D 92.108 1039 61 11 1921 2941 414114262 414113227 0.000000e+00 1445.0
2 TraesCS6D01G305400 chr6D 92.296 662 42 7 2114 2775 414078235 414077583 0.000000e+00 931.0
3 TraesCS6D01G305400 chr6D 82.615 719 67 36 862 1558 414115052 414114370 1.950000e-162 582.0
4 TraesCS6D01G305400 chr6D 97.917 288 6 0 1633 1920 333349908 333350195 2.020000e-137 499.0
5 TraesCS6D01G305400 chr6D 85.317 504 33 18 2 488 414080295 414079816 2.040000e-132 483.0
6 TraesCS6D01G305400 chr6D 90.970 299 23 2 3192 3486 414109574 414109276 2.110000e-107 399.0
7 TraesCS6D01G305400 chr6D 81.633 539 43 27 169 682 414115727 414115220 2.730000e-106 396.0
8 TraesCS6D01G305400 chr6D 89.535 258 21 2 2933 3190 414111477 414111226 4.700000e-84 322.0
9 TraesCS6D01G305400 chr6D 87.879 132 9 3 544 668 414079089 414078958 8.440000e-32 148.0
10 TraesCS6D01G305400 chr6B 91.586 1557 83 20 1925 3446 624496629 624495086 0.000000e+00 2106.0
11 TraesCS6D01G305400 chr6B 88.818 1413 83 29 224 1598 624498021 624496646 0.000000e+00 1664.0
12 TraesCS6D01G305400 chr6B 92.039 1030 45 12 1921 2923 624403332 624402313 0.000000e+00 1413.0
13 TraesCS6D01G305400 chr6B 85.847 1293 92 49 343 1598 624410243 624409005 0.000000e+00 1290.0
14 TraesCS6D01G305400 chr6B 93.213 884 45 7 2122 3004 624312772 624311903 0.000000e+00 1286.0
15 TraesCS6D01G305400 chr6B 90.851 787 58 7 1991 2775 624018360 624017586 0.000000e+00 1042.0
16 TraesCS6D01G305400 chr6B 91.756 655 40 10 2122 2772 624178037 624177393 0.000000e+00 898.0
17 TraesCS6D01G305400 chr6B 83.858 731 79 28 862 1580 624313805 624313102 0.000000e+00 660.0
18 TraesCS6D01G305400 chr6B 84.151 713 62 23 862 1554 624019332 624018651 0.000000e+00 643.0
19 TraesCS6D01G305400 chr6B 82.353 731 83 34 862 1580 624179062 624178366 9.020000e-166 593.0
20 TraesCS6D01G305400 chr6B 87.195 492 51 9 3000 3485 624272952 624272467 1.980000e-152 549.0
21 TraesCS6D01G305400 chr6B 92.228 386 23 4 4 388 624498445 624498066 1.190000e-149 540.0
22 TraesCS6D01G305400 chr6B 84.783 506 35 19 2 488 624181840 624181358 1.590000e-128 470.0
23 TraesCS6D01G305400 chr6B 89.418 378 33 5 3113 3486 624401670 624401296 1.590000e-128 470.0
24 TraesCS6D01G305400 chr6B 84.047 514 36 19 2 491 624314901 624314410 1.600000e-123 453.0
25 TraesCS6D01G305400 chr6B 93.380 287 19 0 1638 1924 5681975 5681689 3.480000e-115 425.0
26 TraesCS6D01G305400 chr6B 93.380 287 19 0 1636 1922 578559171 578559457 3.480000e-115 425.0
27 TraesCS6D01G305400 chr6B 92.958 213 14 1 3487 3698 483334693 483334481 3.660000e-80 309.0
28 TraesCS6D01G305400 chr6B 83.662 355 16 10 391 713 624019729 624019385 2.850000e-76 296.0
29 TraesCS6D01G305400 chr6B 81.618 408 27 20 1 388 624020390 624020011 1.020000e-75 294.0
30 TraesCS6D01G305400 chr6B 87.143 210 21 3 2919 3128 624402180 624401977 2.270000e-57 233.0
31 TraesCS6D01G305400 chr6B 94.805 77 2 1 3696 3772 624401299 624401225 6.620000e-23 119.0
32 TraesCS6D01G305400 chr6B 94.805 77 3 1 3696 3772 624494833 624494758 6.620000e-23 119.0
33 TraesCS6D01G305400 chr6B 100.000 35 0 0 3702 3736 624272463 624272429 8.750000e-07 65.8
34 TraesCS6D01G305400 chr6A 90.892 1570 85 18 1924 3486 559168168 559166650 0.000000e+00 2054.0
35 TraesCS6D01G305400 chr6A 89.756 1640 96 38 47 1638 559169819 559168204 0.000000e+00 2032.0
36 TraesCS6D01G305400 chr6A 88.327 831 67 18 1952 2773 559002969 559002160 0.000000e+00 970.0
37 TraesCS6D01G305400 chr6A 88.313 830 67 18 1952 2772 559132915 559132107 0.000000e+00 968.0
38 TraesCS6D01G305400 chr6A 86.490 866 56 34 1921 2772 559019747 559018929 0.000000e+00 894.0
39 TraesCS6D01G305400 chr6A 84.469 734 64 29 869 1597 559133653 559132965 0.000000e+00 678.0
40 TraesCS6D01G305400 chr6A 83.175 630 42 28 1 620 559004424 559003849 5.590000e-143 518.0
41 TraesCS6D01G305400 chr6A 82.838 606 55 24 1001 1597 559003584 559003019 7.280000e-137 497.0
42 TraesCS6D01G305400 chr6A 81.629 626 52 32 1 605 559134701 559134118 9.550000e-126 460.0
43 TraesCS6D01G305400 chr6A 89.744 351 31 3 3141 3486 559166623 559166273 9.610000e-121 444.0
44 TraesCS6D01G305400 chr6A 80.398 653 53 32 1 620 559020849 559020239 9.680000e-116 427.0
45 TraesCS6D01G305400 chr6A 93.050 259 16 1 1256 1512 559020047 559019789 9.890000e-101 377.0
46 TraesCS6D01G305400 chr6A 89.844 256 22 2 3141 3392 559166246 559165991 3.630000e-85 326.0
47 TraesCS6D01G305400 chr6A 94.203 69 3 1 3696 3764 559157164 559157097 1.850000e-18 104.0
48 TraesCS6D01G305400 chr6A 97.500 40 1 0 5 44 559169888 559169849 6.760000e-08 69.4
49 TraesCS6D01G305400 chrUn 90.476 399 26 10 2378 2773 395158320 395158709 2.010000e-142 516.0
50 TraesCS6D01G305400 chr2D 98.587 283 4 0 1638 1920 622867730 622868012 5.620000e-138 501.0
51 TraesCS6D01G305400 chr2D 90.789 228 17 3 3476 3699 629214222 629213995 6.120000e-78 302.0
52 TraesCS6D01G305400 chr1B 94.346 283 15 1 1638 1920 687415228 687414947 2.080000e-117 433.0
53 TraesCS6D01G305400 chr1B 92.308 221 15 2 3484 3703 555124974 555125193 2.830000e-81 313.0
54 TraesCS6D01G305400 chr7A 93.448 290 19 0 1631 1920 31580905 31581194 7.490000e-117 431.0
55 TraesCS6D01G305400 chr7A 80.687 233 19 11 2933 3160 658987690 658987479 1.400000e-34 158.0
56 TraesCS6D01G305400 chr5D 93.993 283 17 0 1638 1920 450608769 450609051 2.690000e-116 429.0
57 TraesCS6D01G305400 chr5D 93.426 289 16 3 1638 1925 77866531 77866817 3.480000e-115 425.0
58 TraesCS6D01G305400 chr3D 93.706 286 17 1 1638 1923 454197403 454197119 9.680000e-116 427.0
59 TraesCS6D01G305400 chr1D 92.208 231 16 2 3487 3715 182614683 182614453 3.630000e-85 326.0
60 TraesCS6D01G305400 chr4B 93.396 212 14 0 3487 3698 165425945 165425734 7.870000e-82 315.0
61 TraesCS6D01G305400 chr4B 92.093 215 17 0 3484 3698 634730319 634730533 1.700000e-78 303.0
62 TraesCS6D01G305400 chr7B 92.558 215 15 1 3487 3700 255064228 255064014 1.320000e-79 307.0
63 TraesCS6D01G305400 chr5B 91.441 222 18 1 3484 3704 465756445 465756666 1.700000e-78 303.0
64 TraesCS6D01G305400 chr5A 88.934 244 21 6 3458 3698 691679690 691679930 2.850000e-76 296.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G305400 chr6D 414255155 414258926 3771 True 6966.000000 6966 100.000000 1 3772 1 chr6D.!!$R1 3771
1 TraesCS6D01G305400 chr6D 414109276 414115727 6451 True 628.800000 1445 87.372200 169 3486 5 chr6D.!!$R3 3317
2 TraesCS6D01G305400 chr6D 414077583 414080295 2712 True 520.666667 931 88.497333 2 2775 3 chr6D.!!$R2 2773
3 TraesCS6D01G305400 chr6B 624409005 624410243 1238 True 1290.000000 1290 85.847000 343 1598 1 chr6B.!!$R3 1255
4 TraesCS6D01G305400 chr6B 624494758 624498445 3687 True 1107.250000 2106 91.859250 4 3772 4 chr6B.!!$R9 3768
5 TraesCS6D01G305400 chr6B 624311903 624314901 2998 True 799.666667 1286 87.039333 2 3004 3 chr6B.!!$R7 3002
6 TraesCS6D01G305400 chr6B 624177393 624181840 4447 True 653.666667 898 86.297333 2 2772 3 chr6B.!!$R5 2770
7 TraesCS6D01G305400 chr6B 624017586 624020390 2804 True 568.750000 1042 85.070500 1 2775 4 chr6B.!!$R4 2774
8 TraesCS6D01G305400 chr6B 624401225 624403332 2107 True 558.750000 1413 90.851250 1921 3772 4 chr6B.!!$R8 1851
9 TraesCS6D01G305400 chr6B 624272429 624272952 523 True 307.400000 549 93.597500 3000 3736 2 chr6B.!!$R6 736
10 TraesCS6D01G305400 chr6A 559165991 559169888 3897 True 985.080000 2054 91.547200 5 3486 5 chr6A.!!$R5 3481
11 TraesCS6D01G305400 chr6A 559132107 559134701 2594 True 702.000000 968 84.803667 1 2772 3 chr6A.!!$R4 2771
12 TraesCS6D01G305400 chr6A 559002160 559004424 2264 True 661.666667 970 84.780000 1 2773 3 chr6A.!!$R2 2772
13 TraesCS6D01G305400 chr6A 559018929 559020849 1920 True 566.000000 894 86.646000 1 2772 3 chr6A.!!$R3 2771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
959 4828 0.238289 AGCACAAACACGCATACAGC 59.762 50.0 0.0 0.0 40.87 4.40 F
1656 5749 0.032615 AGGCCCTGTTTGGTTCACAA 60.033 50.0 0.0 0.0 37.28 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2700 6894 1.275291 CTCCTTGGCCTCGAACTTGTA 59.725 52.381 3.32 0.0 0.0 2.41 R
2981 9075 0.777631 CAAAAGTCGCCATGCAAACG 59.222 50.000 0.00 0.0 0.0 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 118 1.673033 GCTTGATGCGTACAGGAGTGT 60.673 52.381 0.00 0.00 41.06 3.55
198 246 1.304547 AGTAGGACAGACAGCGCCT 60.305 57.895 2.29 0.00 34.56 5.52
323 407 2.998670 CAGCAGTCAAGTGATCGATGTT 59.001 45.455 0.54 0.00 0.00 2.71
374 459 5.891551 TGACAGCAGAACTCCACTATATGTA 59.108 40.000 0.00 0.00 0.00 2.29
375 460 6.150396 ACAGCAGAACTCCACTATATGTAC 57.850 41.667 0.00 0.00 0.00 2.90
444 1024 7.864379 TGTAAAGTAAAGTAAGAGACAACTCCG 59.136 37.037 0.00 0.00 43.53 4.63
492 1095 9.886132 CAATCAACACTACTTAGGTTAGGTTAT 57.114 33.333 0.00 0.00 0.00 1.89
496 1099 9.813446 CAACACTACTTAGGTTAGGTTATTAGG 57.187 37.037 0.00 0.00 0.00 2.69
538 1145 3.754323 AGCGTAGACTATCAGCCTATCAC 59.246 47.826 4.59 0.00 0.00 3.06
583 2344 4.863689 CGTCTCCATCAGAGCATATTGATC 59.136 45.833 0.00 0.00 42.90 2.92
741 4580 1.139058 ACGTCCAGACAGCTTTGTTCT 59.861 47.619 0.00 0.00 0.00 3.01
771 4616 8.958119 TCCATATTGATTGACCAAAGTAGTAC 57.042 34.615 0.00 0.00 0.00 2.73
773 4618 9.046296 CCATATTGATTGACCAAAGTAGTACTC 57.954 37.037 2.58 0.00 0.00 2.59
774 4619 9.046296 CATATTGATTGACCAAAGTAGTACTCC 57.954 37.037 2.58 0.00 0.00 3.85
775 4620 6.428083 TTGATTGACCAAAGTAGTACTCCA 57.572 37.500 2.58 0.00 0.00 3.86
776 4621 6.620877 TGATTGACCAAAGTAGTACTCCAT 57.379 37.500 2.58 0.00 0.00 3.41
777 4622 7.727578 TGATTGACCAAAGTAGTACTCCATA 57.272 36.000 2.58 0.00 0.00 2.74
778 4623 7.782049 TGATTGACCAAAGTAGTACTCCATAG 58.218 38.462 2.58 0.00 0.00 2.23
779 4624 7.399191 TGATTGACCAAAGTAGTACTCCATAGT 59.601 37.037 2.58 0.00 39.91 2.12
781 4626 8.654485 TTGACCAAAGTAGTACTCCATAGTAA 57.346 34.615 2.58 0.00 39.90 2.24
835 4687 1.992834 TCCCGGCTAGGTCATTGCA 60.993 57.895 0.00 0.00 38.74 4.08
844 4696 2.496899 AGGTCATTGCAGTTAGGTGG 57.503 50.000 0.00 0.00 0.00 4.61
919 4780 1.265095 CTCAAAGCGCACACTCAACAT 59.735 47.619 11.47 0.00 0.00 2.71
959 4828 0.238289 AGCACAAACACGCATACAGC 59.762 50.000 0.00 0.00 40.87 4.40
979 4864 1.724582 GCGAGAGTGAGAGAGGGAGC 61.725 65.000 0.00 0.00 0.00 4.70
999 4884 0.961019 GAGGCATCAGATCGAGAGCT 59.039 55.000 0.00 0.00 0.00 4.09
1047 4932 1.894466 TCGTTGAACTTCCCGGTGATA 59.106 47.619 0.00 0.00 0.00 2.15
1111 4996 3.690280 TCATCCACGACGCCTGCA 61.690 61.111 0.00 0.00 0.00 4.41
1151 5036 1.302752 TGCCACTGCCACTCACATC 60.303 57.895 0.00 0.00 36.33 3.06
1152 5037 1.302752 GCCACTGCCACTCACATCA 60.303 57.895 0.00 0.00 0.00 3.07
1153 5038 1.580845 GCCACTGCCACTCACATCAC 61.581 60.000 0.00 0.00 0.00 3.06
1160 5045 1.888215 CCACTCACATCACACTGCTT 58.112 50.000 0.00 0.00 0.00 3.91
1161 5047 1.802960 CCACTCACATCACACTGCTTC 59.197 52.381 0.00 0.00 0.00 3.86
1163 5049 3.072211 CACTCACATCACACTGCTTCAT 58.928 45.455 0.00 0.00 0.00 2.57
1233 5185 4.503910 TCTTGACATGATTAACTGACCGG 58.496 43.478 0.00 0.00 0.00 5.28
1235 5187 1.593006 GACATGATTAACTGACCGGCG 59.407 52.381 0.00 0.00 0.00 6.46
1236 5188 0.304705 CATGATTAACTGACCGGCGC 59.695 55.000 0.00 0.00 0.00 6.53
1237 5189 0.107897 ATGATTAACTGACCGGCGCA 60.108 50.000 10.83 0.00 0.00 6.09
1238 5190 1.017177 TGATTAACTGACCGGCGCAC 61.017 55.000 10.83 0.00 0.00 5.34
1239 5191 0.739813 GATTAACTGACCGGCGCACT 60.740 55.000 10.83 0.00 0.00 4.40
1240 5192 0.321298 ATTAACTGACCGGCGCACTT 60.321 50.000 10.83 0.00 0.00 3.16
1241 5193 0.317799 TTAACTGACCGGCGCACTTA 59.682 50.000 10.83 0.00 0.00 2.24
1242 5194 0.533491 TAACTGACCGGCGCACTTAT 59.467 50.000 10.83 0.00 0.00 1.73
1243 5195 0.533491 AACTGACCGGCGCACTTATA 59.467 50.000 10.83 0.00 0.00 0.98
1244 5196 0.533491 ACTGACCGGCGCACTTATAA 59.467 50.000 10.83 0.00 0.00 0.98
1245 5197 1.066716 ACTGACCGGCGCACTTATAAA 60.067 47.619 10.83 0.00 0.00 1.40
1246 5198 2.210116 CTGACCGGCGCACTTATAAAT 58.790 47.619 10.83 0.00 0.00 1.40
1247 5199 2.612212 CTGACCGGCGCACTTATAAATT 59.388 45.455 10.83 0.00 0.00 1.82
1248 5200 2.610374 TGACCGGCGCACTTATAAATTC 59.390 45.455 10.83 0.00 0.00 2.17
1249 5201 2.870411 GACCGGCGCACTTATAAATTCT 59.130 45.455 10.83 0.00 0.00 2.40
1250 5202 2.612212 ACCGGCGCACTTATAAATTCTG 59.388 45.455 10.83 0.00 0.00 3.02
1251 5203 2.032030 CCGGCGCACTTATAAATTCTGG 60.032 50.000 10.83 0.00 0.00 3.86
1282 5234 1.002257 AACCATGGCATCTCGCACA 60.002 52.632 13.04 0.00 45.17 4.57
1284 5236 0.608856 ACCATGGCATCTCGCACAAA 60.609 50.000 13.04 0.00 45.17 2.83
1285 5237 0.742505 CCATGGCATCTCGCACAAAT 59.257 50.000 0.00 0.00 45.17 2.32
1311 5263 2.997897 GAGGTGGAGCGGGTGAGT 60.998 66.667 0.00 0.00 0.00 3.41
1359 5311 1.531578 GACAAGTTCAAGGAGTTCGCC 59.468 52.381 0.00 0.00 0.00 5.54
1515 5482 3.065786 CACGTACGCCTGATTCCTTAGTA 59.934 47.826 16.72 0.00 0.00 1.82
1516 5483 3.065925 ACGTACGCCTGATTCCTTAGTAC 59.934 47.826 16.72 0.00 0.00 2.73
1517 5484 3.314635 CGTACGCCTGATTCCTTAGTACT 59.685 47.826 0.52 0.00 33.09 2.73
1518 5485 4.554330 CGTACGCCTGATTCCTTAGTACTC 60.554 50.000 0.52 0.00 33.09 2.59
1519 5486 2.694109 ACGCCTGATTCCTTAGTACTCC 59.306 50.000 0.00 0.00 0.00 3.85
1525 5492 6.931840 GCCTGATTCCTTAGTACTCCAATTAG 59.068 42.308 0.00 0.41 0.00 1.73
1590 5674 4.125703 GACCAAGAGATAGCACCAGATTG 58.874 47.826 0.00 0.00 0.00 2.67
1638 5731 5.856986 TCGAAAAAGTACAGAGACGATTCAG 59.143 40.000 0.00 0.00 0.00 3.02
1639 5732 5.061064 CGAAAAAGTACAGAGACGATTCAGG 59.939 44.000 0.00 0.00 0.00 3.86
1640 5733 3.512033 AAGTACAGAGACGATTCAGGC 57.488 47.619 0.00 0.00 0.00 4.85
1641 5734 1.751924 AGTACAGAGACGATTCAGGCC 59.248 52.381 0.00 0.00 0.00 5.19
1642 5735 1.112113 TACAGAGACGATTCAGGCCC 58.888 55.000 0.00 0.00 0.00 5.80
1643 5736 0.616111 ACAGAGACGATTCAGGCCCT 60.616 55.000 0.00 0.00 0.00 5.19
1644 5737 0.179089 CAGAGACGATTCAGGCCCTG 60.179 60.000 3.69 3.69 0.00 4.45
1645 5738 0.616111 AGAGACGATTCAGGCCCTGT 60.616 55.000 11.27 0.00 32.61 4.00
1646 5739 0.250513 GAGACGATTCAGGCCCTGTT 59.749 55.000 11.27 0.00 32.61 3.16
1647 5740 0.693049 AGACGATTCAGGCCCTGTTT 59.307 50.000 11.27 0.00 32.61 2.83
1648 5741 0.804989 GACGATTCAGGCCCTGTTTG 59.195 55.000 11.27 6.41 32.61 2.93
1649 5742 0.609131 ACGATTCAGGCCCTGTTTGG 60.609 55.000 11.27 3.57 32.61 3.28
1650 5743 0.609131 CGATTCAGGCCCTGTTTGGT 60.609 55.000 11.27 0.00 32.61 3.67
1651 5744 1.632589 GATTCAGGCCCTGTTTGGTT 58.367 50.000 11.27 0.00 32.61 3.67
1652 5745 1.546029 GATTCAGGCCCTGTTTGGTTC 59.454 52.381 11.27 0.00 32.61 3.62
1653 5746 0.260230 TTCAGGCCCTGTTTGGTTCA 59.740 50.000 11.27 0.00 32.61 3.18
1654 5747 0.467290 TCAGGCCCTGTTTGGTTCAC 60.467 55.000 11.27 0.00 32.61 3.18
1655 5748 0.754957 CAGGCCCTGTTTGGTTCACA 60.755 55.000 1.39 0.00 0.00 3.58
1656 5749 0.032615 AGGCCCTGTTTGGTTCACAA 60.033 50.000 0.00 0.00 37.28 3.33
1657 5750 0.389025 GGCCCTGTTTGGTTCACAAG 59.611 55.000 0.00 0.00 40.82 3.16
1658 5751 1.111277 GCCCTGTTTGGTTCACAAGT 58.889 50.000 0.00 0.00 40.82 3.16
1659 5752 1.067060 GCCCTGTTTGGTTCACAAGTC 59.933 52.381 0.00 0.00 40.82 3.01
1660 5753 1.681264 CCCTGTTTGGTTCACAAGTCC 59.319 52.381 0.00 0.00 40.82 3.85
1661 5754 2.654863 CCTGTTTGGTTCACAAGTCCT 58.345 47.619 0.00 0.00 40.82 3.85
1662 5755 3.434453 CCCTGTTTGGTTCACAAGTCCTA 60.434 47.826 0.00 0.00 40.82 2.94
1663 5756 3.815401 CCTGTTTGGTTCACAAGTCCTAG 59.185 47.826 0.00 0.00 40.82 3.02
1664 5757 4.444306 CCTGTTTGGTTCACAAGTCCTAGA 60.444 45.833 0.00 0.00 40.82 2.43
1665 5758 5.105567 TGTTTGGTTCACAAGTCCTAGAA 57.894 39.130 0.00 0.00 40.82 2.10
1666 5759 4.879545 TGTTTGGTTCACAAGTCCTAGAAC 59.120 41.667 0.00 0.00 40.82 3.01
1667 5760 5.123936 GTTTGGTTCACAAGTCCTAGAACT 58.876 41.667 0.00 0.00 40.82 3.01
1668 5761 5.367945 TTGGTTCACAAGTCCTAGAACTT 57.632 39.130 0.00 0.00 40.05 2.66
1669 5762 5.367945 TGGTTCACAAGTCCTAGAACTTT 57.632 39.130 0.00 0.00 40.05 2.66
1670 5763 5.751586 TGGTTCACAAGTCCTAGAACTTTT 58.248 37.500 0.00 0.00 40.05 2.27
1671 5764 6.184789 TGGTTCACAAGTCCTAGAACTTTTT 58.815 36.000 0.00 0.00 40.05 1.94
1697 5790 9.856162 TTTAGTCCCAACTTATAAGTTTCAAGT 57.144 29.630 24.99 17.47 46.52 3.16
1698 5791 7.981102 AGTCCCAACTTATAAGTTTCAAGTC 57.019 36.000 24.99 14.35 46.52 3.01
1699 5792 6.940867 AGTCCCAACTTATAAGTTTCAAGTCC 59.059 38.462 24.99 11.35 46.52 3.85
1700 5793 6.150641 GTCCCAACTTATAAGTTTCAAGTCCC 59.849 42.308 24.99 7.28 46.52 4.46
1701 5794 6.045106 TCCCAACTTATAAGTTTCAAGTCCCT 59.955 38.462 24.99 1.11 46.52 4.20
1702 5795 7.238096 TCCCAACTTATAAGTTTCAAGTCCCTA 59.762 37.037 24.99 3.15 46.52 3.53
1703 5796 7.886446 CCCAACTTATAAGTTTCAAGTCCCTAA 59.114 37.037 24.99 0.00 46.52 2.69
1704 5797 9.292195 CCAACTTATAAGTTTCAAGTCCCTAAA 57.708 33.333 24.99 0.00 46.52 1.85
1715 5808 8.680001 GTTTCAAGTCCCTAAAAAGTTTCTACA 58.320 33.333 0.00 0.00 0.00 2.74
1722 5820 7.865889 GTCCCTAAAAAGTTTCTACATGTTTGG 59.134 37.037 2.30 0.00 0.00 3.28
1729 5827 9.541143 AAAAGTTTCTACATGTTTGGTTATTGG 57.459 29.630 2.30 0.00 0.00 3.16
1730 5828 7.227049 AGTTTCTACATGTTTGGTTATTGGG 57.773 36.000 2.30 0.00 0.00 4.12
1731 5829 7.007723 AGTTTCTACATGTTTGGTTATTGGGA 58.992 34.615 2.30 0.00 0.00 4.37
1733 5831 6.134535 TCTACATGTTTGGTTATTGGGACT 57.865 37.500 2.30 0.00 0.00 3.85
1734 5832 6.548321 TCTACATGTTTGGTTATTGGGACTT 58.452 36.000 2.30 0.00 0.00 3.01
1736 5834 8.333235 TCTACATGTTTGGTTATTGGGACTTAT 58.667 33.333 2.30 0.00 0.00 1.73
1737 5835 9.621629 CTACATGTTTGGTTATTGGGACTTATA 57.378 33.333 2.30 0.00 0.00 0.98
1738 5836 8.887264 ACATGTTTGGTTATTGGGACTTATAA 57.113 30.769 0.00 0.00 0.00 0.98
1739 5837 8.966868 ACATGTTTGGTTATTGGGACTTATAAG 58.033 33.333 11.05 11.05 0.00 1.73
1740 5838 8.966868 CATGTTTGGTTATTGGGACTTATAAGT 58.033 33.333 18.05 18.05 43.16 2.24
1763 5861 9.448587 AAGTCCCTATAAGACCATATTACAACT 57.551 33.333 0.09 0.00 34.67 3.16
1784 5882 9.577222 ACAACTATAAGTCCCTATAAGACTCTC 57.423 37.037 5.74 0.00 43.77 3.20
1785 5883 9.016438 CAACTATAAGTCCCTATAAGACTCTCC 57.984 40.741 5.74 0.00 43.77 3.71
1786 5884 8.528543 ACTATAAGTCCCTATAAGACTCTCCT 57.471 38.462 5.74 0.00 43.77 3.69
1787 5885 8.962205 ACTATAAGTCCCTATAAGACTCTCCTT 58.038 37.037 5.74 0.00 43.77 3.36
1790 5888 9.816787 ATAAGTCCCTATAAGACTCTCCTTAAG 57.183 37.037 5.74 0.00 43.77 1.85
1791 5889 7.468752 AGTCCCTATAAGACTCTCCTTAAGA 57.531 40.000 3.36 0.00 40.61 2.10
1820 5918 5.643379 TTTGATAAGTCTCAAATGCCCAC 57.357 39.130 0.00 0.00 39.55 4.61
1821 5919 4.574674 TGATAAGTCTCAAATGCCCACT 57.425 40.909 0.00 0.00 0.00 4.00
1822 5920 4.922206 TGATAAGTCTCAAATGCCCACTT 58.078 39.130 0.00 0.00 0.00 3.16
1823 5921 5.324409 TGATAAGTCTCAAATGCCCACTTT 58.676 37.500 0.00 0.00 0.00 2.66
1824 5922 6.480763 TGATAAGTCTCAAATGCCCACTTTA 58.519 36.000 0.00 0.00 0.00 1.85
1825 5923 6.945435 TGATAAGTCTCAAATGCCCACTTTAA 59.055 34.615 0.00 0.00 0.00 1.52
1826 5924 5.712152 AAGTCTCAAATGCCCACTTTAAG 57.288 39.130 0.00 0.00 0.00 1.85
1827 5925 4.729868 AGTCTCAAATGCCCACTTTAAGT 58.270 39.130 0.00 0.00 0.00 2.24
1828 5926 4.762251 AGTCTCAAATGCCCACTTTAAGTC 59.238 41.667 0.00 0.00 0.00 3.01
1829 5927 4.079253 TCTCAAATGCCCACTTTAAGTCC 58.921 43.478 0.00 0.00 0.00 3.85
1830 5928 3.161866 TCAAATGCCCACTTTAAGTCCC 58.838 45.455 0.00 0.00 0.00 4.46
1831 5929 3.165071 CAAATGCCCACTTTAAGTCCCT 58.835 45.455 0.00 0.00 0.00 4.20
1832 5930 4.043561 TCAAATGCCCACTTTAAGTCCCTA 59.956 41.667 0.00 0.00 0.00 3.53
1833 5931 4.881157 AATGCCCACTTTAAGTCCCTAT 57.119 40.909 0.00 0.00 0.00 2.57
1834 5932 5.987019 AATGCCCACTTTAAGTCCCTATA 57.013 39.130 0.00 0.00 0.00 1.31
1835 5933 5.987019 ATGCCCACTTTAAGTCCCTATAA 57.013 39.130 0.00 0.00 0.00 0.98
1836 5934 5.367945 TGCCCACTTTAAGTCCCTATAAG 57.632 43.478 0.00 0.00 0.00 1.73
1837 5935 4.786454 TGCCCACTTTAAGTCCCTATAAGT 59.214 41.667 0.00 0.00 0.00 2.24
1838 5936 5.104652 TGCCCACTTTAAGTCCCTATAAGTC 60.105 44.000 0.00 0.00 0.00 3.01
1839 5937 5.686913 GCCCACTTTAAGTCCCTATAAGTCC 60.687 48.000 0.00 0.00 0.00 3.85
1840 5938 5.163227 CCCACTTTAAGTCCCTATAAGTCCC 60.163 48.000 0.00 0.00 0.00 4.46
1841 5939 5.666265 CCACTTTAAGTCCCTATAAGTCCCT 59.334 44.000 0.00 0.00 0.00 4.20
1842 5940 6.158169 CCACTTTAAGTCCCTATAAGTCCCTT 59.842 42.308 0.00 0.00 0.00 3.95
1843 5941 7.273712 CACTTTAAGTCCCTATAAGTCCCTTC 58.726 42.308 0.00 0.00 0.00 3.46
1844 5942 7.125963 CACTTTAAGTCCCTATAAGTCCCTTCT 59.874 40.741 0.00 0.00 0.00 2.85
1845 5943 7.125963 ACTTTAAGTCCCTATAAGTCCCTTCTG 59.874 40.741 0.00 0.00 0.00 3.02
1846 5944 4.628661 AGTCCCTATAAGTCCCTTCTGT 57.371 45.455 0.00 0.00 0.00 3.41
1847 5945 4.961585 AGTCCCTATAAGTCCCTTCTGTT 58.038 43.478 0.00 0.00 0.00 3.16
1848 5946 5.351405 AGTCCCTATAAGTCCCTTCTGTTT 58.649 41.667 0.00 0.00 0.00 2.83
1849 5947 5.189934 AGTCCCTATAAGTCCCTTCTGTTTG 59.810 44.000 0.00 0.00 0.00 2.93
1850 5948 4.473559 TCCCTATAAGTCCCTTCTGTTTGG 59.526 45.833 0.00 0.00 0.00 3.28
1851 5949 4.227527 CCCTATAAGTCCCTTCTGTTTGGT 59.772 45.833 0.00 0.00 0.00 3.67
1852 5950 5.281037 CCCTATAAGTCCCTTCTGTTTGGTT 60.281 44.000 0.00 0.00 0.00 3.67
1853 5951 6.246163 CCTATAAGTCCCTTCTGTTTGGTTT 58.754 40.000 0.00 0.00 0.00 3.27
1854 5952 7.399634 CCTATAAGTCCCTTCTGTTTGGTTTA 58.600 38.462 0.00 0.00 0.00 2.01
1855 5953 7.553044 CCTATAAGTCCCTTCTGTTTGGTTTAG 59.447 40.741 0.00 0.00 0.00 1.85
1856 5954 5.382664 AAGTCCCTTCTGTTTGGTTTAGA 57.617 39.130 0.00 0.00 0.00 2.10
1857 5955 5.584551 AGTCCCTTCTGTTTGGTTTAGAT 57.415 39.130 0.00 0.00 0.00 1.98
1858 5956 5.316987 AGTCCCTTCTGTTTGGTTTAGATG 58.683 41.667 0.00 0.00 0.00 2.90
1859 5957 4.459337 GTCCCTTCTGTTTGGTTTAGATGG 59.541 45.833 0.00 0.00 36.22 3.51
1860 5958 3.763897 CCCTTCTGTTTGGTTTAGATGGG 59.236 47.826 9.24 9.24 44.49 4.00
1861 5959 4.662278 CCTTCTGTTTGGTTTAGATGGGA 58.338 43.478 0.00 0.00 34.09 4.37
1862 5960 4.459337 CCTTCTGTTTGGTTTAGATGGGAC 59.541 45.833 0.00 0.00 34.09 4.46
1863 5961 4.993705 TCTGTTTGGTTTAGATGGGACT 57.006 40.909 0.00 0.00 0.00 3.85
1864 5962 5.319043 TCTGTTTGGTTTAGATGGGACTT 57.681 39.130 0.00 0.00 0.00 3.01
1865 5963 6.442541 TCTGTTTGGTTTAGATGGGACTTA 57.557 37.500 0.00 0.00 0.00 2.24
1866 5964 7.027874 TCTGTTTGGTTTAGATGGGACTTAT 57.972 36.000 0.00 0.00 0.00 1.73
1867 5965 8.153221 TCTGTTTGGTTTAGATGGGACTTATA 57.847 34.615 0.00 0.00 0.00 0.98
1868 5966 8.265055 TCTGTTTGGTTTAGATGGGACTTATAG 58.735 37.037 0.00 0.00 0.00 1.31
1869 5967 7.343357 TGTTTGGTTTAGATGGGACTTATAGG 58.657 38.462 0.00 0.00 0.00 2.57
1870 5968 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
1871 5969 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
1872 5970 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
1873 5971 5.845065 GGTTTAGATGGGACTTATAGGGACT 59.155 44.000 0.00 0.00 46.37 3.85
1874 5972 6.329460 GGTTTAGATGGGACTTATAGGGACTT 59.671 42.308 0.00 0.00 41.75 3.01
1875 5973 7.443477 GTTTAGATGGGACTTATAGGGACTTC 58.557 42.308 0.00 0.00 41.75 3.01
1876 5974 5.426325 AGATGGGACTTATAGGGACTTCT 57.574 43.478 0.00 0.00 41.75 2.85
1877 5975 5.793967 AGATGGGACTTATAGGGACTTCTT 58.206 41.667 0.00 0.00 41.75 2.52
1878 5976 6.213525 AGATGGGACTTATAGGGACTTCTTT 58.786 40.000 0.00 0.00 41.75 2.52
1879 5977 7.371043 AGATGGGACTTATAGGGACTTCTTTA 58.629 38.462 0.00 0.00 41.75 1.85
1880 5978 7.849904 AGATGGGACTTATAGGGACTTCTTTAA 59.150 37.037 0.00 0.00 41.75 1.52
1881 5979 7.433537 TGGGACTTATAGGGACTTCTTTAAG 57.566 40.000 0.00 0.00 41.75 1.85
1897 5995 9.516546 ACTTCTTTAAGTCCCTAAACCAATAAG 57.483 33.333 0.00 0.00 42.42 1.73
1898 5996 9.516546 CTTCTTTAAGTCCCTAAACCAATAAGT 57.483 33.333 0.00 0.00 0.00 2.24
1899 5997 9.511272 TTCTTTAAGTCCCTAAACCAATAAGTC 57.489 33.333 0.00 0.00 0.00 3.01
1900 5998 8.105197 TCTTTAAGTCCCTAAACCAATAAGTCC 58.895 37.037 0.00 0.00 0.00 3.85
1901 5999 4.857130 AGTCCCTAAACCAATAAGTCCC 57.143 45.455 0.00 0.00 0.00 4.46
1902 6000 4.445564 AGTCCCTAAACCAATAAGTCCCT 58.554 43.478 0.00 0.00 0.00 4.20
1903 6001 4.227527 AGTCCCTAAACCAATAAGTCCCTG 59.772 45.833 0.00 0.00 0.00 4.45
1904 6002 4.226620 GTCCCTAAACCAATAAGTCCCTGA 59.773 45.833 0.00 0.00 0.00 3.86
1905 6003 4.853276 TCCCTAAACCAATAAGTCCCTGAA 59.147 41.667 0.00 0.00 0.00 3.02
1906 6004 5.313772 TCCCTAAACCAATAAGTCCCTGAAA 59.686 40.000 0.00 0.00 0.00 2.69
1907 6005 6.014012 CCCTAAACCAATAAGTCCCTGAAAA 58.986 40.000 0.00 0.00 0.00 2.29
1908 6006 6.071560 CCCTAAACCAATAAGTCCCTGAAAAC 60.072 42.308 0.00 0.00 0.00 2.43
1909 6007 6.492087 CCTAAACCAATAAGTCCCTGAAAACA 59.508 38.462 0.00 0.00 0.00 2.83
1910 6008 6.800072 AAACCAATAAGTCCCTGAAAACAA 57.200 33.333 0.00 0.00 0.00 2.83
1911 6009 6.800072 AACCAATAAGTCCCTGAAAACAAA 57.200 33.333 0.00 0.00 0.00 2.83
1912 6010 6.156748 ACCAATAAGTCCCTGAAAACAAAC 57.843 37.500 0.00 0.00 0.00 2.93
1913 6011 5.659079 ACCAATAAGTCCCTGAAAACAAACA 59.341 36.000 0.00 0.00 0.00 2.83
1914 6012 6.183360 ACCAATAAGTCCCTGAAAACAAACAG 60.183 38.462 0.00 0.00 0.00 3.16
1915 6013 3.801114 AAGTCCCTGAAAACAAACAGC 57.199 42.857 0.00 0.00 33.40 4.40
1916 6014 2.031870 AGTCCCTGAAAACAAACAGCC 58.968 47.619 0.00 0.00 33.40 4.85
1917 6015 2.031870 GTCCCTGAAAACAAACAGCCT 58.968 47.619 0.00 0.00 33.40 4.58
1918 6016 2.034685 GTCCCTGAAAACAAACAGCCTC 59.965 50.000 0.00 0.00 33.40 4.70
1919 6017 2.091885 TCCCTGAAAACAAACAGCCTCT 60.092 45.455 0.00 0.00 33.40 3.69
1966 6072 2.287427 CCTGACACAGCAGCTCAAAAAG 60.287 50.000 0.00 0.00 34.56 2.27
2027 6145 3.549794 ACAGGAGATAAGATTGCTTGCC 58.450 45.455 0.00 0.00 35.56 4.52
2700 6894 1.014044 CATGAACCTGTACGTGCGCT 61.014 55.000 9.73 0.00 0.00 5.92
2798 6996 1.138883 CGCCGATCGAGGACAAGAA 59.861 57.895 18.66 0.00 41.67 2.52
2813 7011 5.122396 AGGACAAGAATATTTTGAGACGTGC 59.878 40.000 13.71 0.00 0.00 5.34
2954 9048 1.939934 TCTCTTTTGCGGATTATGGCG 59.060 47.619 0.00 0.00 0.00 5.69
2970 9064 1.154654 GCGTGCTGTTACGTGAAGC 60.155 57.895 0.00 5.08 45.36 3.86
2996 9090 1.361668 CTAGCGTTTGCATGGCGACT 61.362 55.000 8.85 7.77 46.23 4.18
3009 9103 4.793071 CATGGCGACTTTTGACACATTTA 58.207 39.130 0.00 0.00 0.00 1.40
3010 9104 4.217754 TGGCGACTTTTGACACATTTAC 57.782 40.909 0.00 0.00 0.00 2.01
3016 9111 6.575942 GCGACTTTTGACACATTTACGTTTAT 59.424 34.615 0.00 0.00 0.00 1.40
3057 9152 0.961019 TTCTGTTGCCCATGTGCTTC 59.039 50.000 0.86 0.00 0.00 3.86
3092 9187 4.330944 CCGTATGGTTGAAGCCACTATA 57.669 45.455 0.00 0.00 41.94 1.31
3093 9188 4.894784 CCGTATGGTTGAAGCCACTATAT 58.105 43.478 0.00 0.00 41.94 0.86
3101 9196 5.185056 GGTTGAAGCCACTATATGTTTTGGT 59.815 40.000 0.00 0.00 0.00 3.67
3235 11304 1.868997 CGAATGTTCGCTGGCTGTT 59.131 52.632 1.90 0.00 44.26 3.16
3236 11305 0.453282 CGAATGTTCGCTGGCTGTTG 60.453 55.000 1.90 0.00 44.26 3.33
3245 11314 0.668401 GCTGGCTGTTGATGGCAAAC 60.668 55.000 0.00 0.00 39.46 2.93
3246 11315 0.387622 CTGGCTGTTGATGGCAAACG 60.388 55.000 0.00 0.00 39.46 3.60
3371 11824 6.413269 GTTTTGAAGAAATTGTCATGTGTGC 58.587 36.000 0.00 0.00 0.00 4.57
3380 11833 4.979943 TTGTCATGTGTGCTTGAAGAAA 57.020 36.364 0.00 0.00 31.80 2.52
3402 11856 7.864379 AGAAATTGCTGTAAAAGACATTCACAG 59.136 33.333 0.00 0.00 37.45 3.66
3423 11877 2.472909 GCCATGCTACCCAGAACGC 61.473 63.158 0.00 0.00 0.00 4.84
3429 11883 1.215647 CTACCCAGAACGCTCGCTT 59.784 57.895 0.00 0.00 0.00 4.68
3437 11891 0.721718 GAACGCTCGCTTGCTATTGT 59.278 50.000 0.00 0.00 0.00 2.71
3449 11903 4.414852 CTTGCTATTGTGGTCCAAAATCG 58.585 43.478 10.79 6.25 36.44 3.34
3488 12158 9.400638 CGAGTAAATGAAGAACATAGGTATCTC 57.599 37.037 0.00 0.00 38.38 2.75
3489 12159 9.699703 GAGTAAATGAAGAACATAGGTATCTCC 57.300 37.037 0.00 0.00 38.38 3.71
3490 12160 8.361139 AGTAAATGAAGAACATAGGTATCTCCG 58.639 37.037 0.00 0.00 38.66 4.63
3491 12161 6.732896 AATGAAGAACATAGGTATCTCCGT 57.267 37.500 0.00 0.00 38.66 4.69
3492 12162 5.769484 TGAAGAACATAGGTATCTCCGTC 57.231 43.478 0.00 0.00 41.99 4.79
3493 12163 5.446860 TGAAGAACATAGGTATCTCCGTCT 58.553 41.667 0.00 0.00 41.99 4.18
3494 12164 5.531659 TGAAGAACATAGGTATCTCCGTCTC 59.468 44.000 0.00 0.00 41.99 3.36
3495 12165 4.066490 AGAACATAGGTATCTCCGTCTCG 58.934 47.826 0.00 0.00 41.99 4.04
3506 12176 3.940723 CCGTCTCGGTGAATAGGTC 57.059 57.895 0.00 0.00 42.73 3.85
3507 12177 1.100510 CCGTCTCGGTGAATAGGTCA 58.899 55.000 0.00 0.00 42.73 4.02
3508 12178 1.681793 CCGTCTCGGTGAATAGGTCAT 59.318 52.381 0.00 0.00 42.73 3.06
3509 12179 2.100916 CCGTCTCGGTGAATAGGTCATT 59.899 50.000 0.00 0.00 42.73 2.57
3510 12180 3.372954 CGTCTCGGTGAATAGGTCATTC 58.627 50.000 0.00 0.00 43.01 2.67
3511 12181 3.372954 GTCTCGGTGAATAGGTCATTCG 58.627 50.000 0.00 0.00 45.25 3.34
3517 12187 3.703420 GTGAATAGGTCATTCGCGTAGT 58.297 45.455 5.77 0.00 45.25 2.73
3518 12188 4.110482 GTGAATAGGTCATTCGCGTAGTT 58.890 43.478 5.77 0.00 45.25 2.24
3519 12189 4.565564 GTGAATAGGTCATTCGCGTAGTTT 59.434 41.667 5.77 0.00 45.25 2.66
3520 12190 5.063060 GTGAATAGGTCATTCGCGTAGTTTT 59.937 40.000 5.77 0.00 45.25 2.43
3521 12191 6.254157 GTGAATAGGTCATTCGCGTAGTTTTA 59.746 38.462 5.77 0.00 45.25 1.52
3522 12192 6.474427 TGAATAGGTCATTCGCGTAGTTTTAG 59.526 38.462 5.77 0.00 45.25 1.85
3523 12193 3.518590 AGGTCATTCGCGTAGTTTTAGG 58.481 45.455 5.77 0.00 0.00 2.69
3524 12194 3.056322 AGGTCATTCGCGTAGTTTTAGGT 60.056 43.478 5.77 0.00 0.00 3.08
3525 12195 3.305361 GGTCATTCGCGTAGTTTTAGGTC 59.695 47.826 5.77 0.00 0.00 3.85
3526 12196 3.922240 GTCATTCGCGTAGTTTTAGGTCA 59.078 43.478 5.77 0.00 0.00 4.02
3527 12197 4.386652 GTCATTCGCGTAGTTTTAGGTCAA 59.613 41.667 5.77 0.00 0.00 3.18
3528 12198 4.386652 TCATTCGCGTAGTTTTAGGTCAAC 59.613 41.667 5.77 0.00 0.00 3.18
3529 12199 2.318578 TCGCGTAGTTTTAGGTCAACG 58.681 47.619 5.77 0.00 0.00 4.10
3530 12200 2.031245 TCGCGTAGTTTTAGGTCAACGA 60.031 45.455 5.77 0.00 32.35 3.85
3531 12201 2.919229 CGCGTAGTTTTAGGTCAACGAT 59.081 45.455 0.00 0.00 32.35 3.73
3532 12202 3.365820 CGCGTAGTTTTAGGTCAACGATT 59.634 43.478 0.00 0.00 32.35 3.34
3533 12203 4.143263 CGCGTAGTTTTAGGTCAACGATTT 60.143 41.667 0.00 0.00 32.35 2.17
3534 12204 5.077424 GCGTAGTTTTAGGTCAACGATTTG 58.923 41.667 0.00 0.00 32.35 2.32
3535 12205 5.107375 GCGTAGTTTTAGGTCAACGATTTGA 60.107 40.000 0.00 0.00 39.55 2.69
3660 12330 9.893634 TTAATTCCTTAAATCGATGACCTAACA 57.106 29.630 0.00 0.00 0.00 2.41
3661 12331 7.787725 ATTCCTTAAATCGATGACCTAACAC 57.212 36.000 0.00 0.00 0.00 3.32
3662 12332 6.540438 TCCTTAAATCGATGACCTAACACT 57.460 37.500 0.00 0.00 0.00 3.55
3663 12333 7.649533 TCCTTAAATCGATGACCTAACACTA 57.350 36.000 0.00 0.00 0.00 2.74
3664 12334 8.070034 TCCTTAAATCGATGACCTAACACTAA 57.930 34.615 0.00 0.00 0.00 2.24
3665 12335 8.195436 TCCTTAAATCGATGACCTAACACTAAG 58.805 37.037 0.00 0.00 0.00 2.18
3666 12336 7.042658 CCTTAAATCGATGACCTAACACTAAGC 60.043 40.741 0.00 0.00 0.00 3.09
3667 12337 3.416119 TCGATGACCTAACACTAAGCG 57.584 47.619 0.00 0.00 0.00 4.68
3668 12338 3.011818 TCGATGACCTAACACTAAGCGA 58.988 45.455 0.00 0.00 0.00 4.93
3669 12339 3.441222 TCGATGACCTAACACTAAGCGAA 59.559 43.478 0.00 0.00 0.00 4.70
3670 12340 4.097437 TCGATGACCTAACACTAAGCGAAT 59.903 41.667 0.00 0.00 0.00 3.34
3671 12341 4.207224 CGATGACCTAACACTAAGCGAATG 59.793 45.833 0.00 0.00 0.00 2.67
3672 12342 4.794278 TGACCTAACACTAAGCGAATGA 57.206 40.909 0.00 0.00 0.00 2.57
3673 12343 4.491676 TGACCTAACACTAAGCGAATGAC 58.508 43.478 0.00 0.00 0.00 3.06
3674 12344 4.219944 TGACCTAACACTAAGCGAATGACT 59.780 41.667 0.00 0.00 0.00 3.41
3675 12345 5.148651 ACCTAACACTAAGCGAATGACTT 57.851 39.130 0.00 0.00 0.00 3.01
3676 12346 6.071784 TGACCTAACACTAAGCGAATGACTTA 60.072 38.462 0.00 0.00 0.00 2.24
3677 12347 6.098017 ACCTAACACTAAGCGAATGACTTAC 58.902 40.000 0.00 0.00 0.00 2.34
3678 12348 6.071503 ACCTAACACTAAGCGAATGACTTACT 60.072 38.462 0.00 0.00 0.00 2.24
3679 12349 6.472808 CCTAACACTAAGCGAATGACTTACTC 59.527 42.308 0.00 0.00 0.00 2.59
3680 12350 5.386958 ACACTAAGCGAATGACTTACTCA 57.613 39.130 0.00 0.00 0.00 3.41
3681 12351 5.162075 ACACTAAGCGAATGACTTACTCAC 58.838 41.667 0.00 0.00 0.00 3.51
3682 12352 4.563184 CACTAAGCGAATGACTTACTCACC 59.437 45.833 0.00 0.00 0.00 4.02
3683 12353 3.963428 AAGCGAATGACTTACTCACCT 57.037 42.857 0.00 0.00 0.00 4.00
3684 12354 5.651139 ACTAAGCGAATGACTTACTCACCTA 59.349 40.000 0.00 0.00 0.00 3.08
3685 12355 4.640789 AGCGAATGACTTACTCACCTAG 57.359 45.455 0.00 0.00 0.00 3.02
3686 12356 4.270834 AGCGAATGACTTACTCACCTAGA 58.729 43.478 0.00 0.00 0.00 2.43
3687 12357 4.890581 AGCGAATGACTTACTCACCTAGAT 59.109 41.667 0.00 0.00 0.00 1.98
3688 12358 4.979197 GCGAATGACTTACTCACCTAGATG 59.021 45.833 0.00 0.00 0.00 2.90
3689 12359 5.524284 CGAATGACTTACTCACCTAGATGG 58.476 45.833 0.00 0.00 42.93 3.51
3690 12360 5.299531 CGAATGACTTACTCACCTAGATGGA 59.700 44.000 0.00 0.00 39.71 3.41
3691 12361 6.015856 CGAATGACTTACTCACCTAGATGGAT 60.016 42.308 0.00 0.00 39.71 3.41
3692 12362 6.662865 ATGACTTACTCACCTAGATGGATG 57.337 41.667 0.00 0.00 39.71 3.51
3693 12363 5.519808 TGACTTACTCACCTAGATGGATGT 58.480 41.667 0.00 0.00 39.71 3.06
3694 12364 5.594725 TGACTTACTCACCTAGATGGATGTC 59.405 44.000 0.00 0.00 39.71 3.06
3695 12365 4.580995 ACTTACTCACCTAGATGGATGTCG 59.419 45.833 0.00 0.00 39.71 4.35
3696 12366 3.019799 ACTCACCTAGATGGATGTCGT 57.980 47.619 0.00 0.00 39.71 4.34
3697 12367 4.166246 ACTCACCTAGATGGATGTCGTA 57.834 45.455 0.00 0.00 39.71 3.43
3698 12368 4.730966 ACTCACCTAGATGGATGTCGTAT 58.269 43.478 0.00 0.00 39.71 3.06
3699 12369 5.877491 ACTCACCTAGATGGATGTCGTATA 58.123 41.667 0.00 0.00 39.71 1.47
3700 12370 5.706369 ACTCACCTAGATGGATGTCGTATAC 59.294 44.000 0.00 0.00 39.71 1.47
3736 12506 3.156293 ACTATGCATGCCAACAACTGAA 58.844 40.909 16.68 0.00 0.00 3.02
3749 12519 4.454728 ACAACTGAACAATTGTTGCACT 57.545 36.364 27.85 3.73 43.19 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 118 4.076394 CGACTTAAAAGTGGGAATGGGAA 58.924 43.478 0.00 0.00 39.88 3.97
265 335 3.186409 CGGTCGATTGTGTCTGAAACATT 59.814 43.478 0.67 0.00 40.80 2.71
323 407 6.763715 AATATATGGCACTCCTCCAACTTA 57.236 37.500 0.00 0.00 37.13 2.24
392 482 6.422223 GTTGATAATGACAAGATTAGGCGTG 58.578 40.000 0.00 0.00 0.00 5.34
444 1024 1.402968 TGAACTCTATGCCGTACGGAC 59.597 52.381 37.62 26.69 37.50 4.79
453 1033 6.674694 AGTGTTGATTGATGAACTCTATGC 57.325 37.500 0.00 0.00 28.64 3.14
492 1095 9.667107 GCTAGCCATTATTTCATGTATACCTAA 57.333 33.333 2.29 0.00 0.00 2.69
493 1096 7.979537 CGCTAGCCATTATTTCATGTATACCTA 59.020 37.037 9.66 0.00 0.00 3.08
494 1097 6.818644 CGCTAGCCATTATTTCATGTATACCT 59.181 38.462 9.66 0.00 0.00 3.08
495 1098 6.594159 ACGCTAGCCATTATTTCATGTATACC 59.406 38.462 9.66 0.00 0.00 2.73
496 1099 7.596749 ACGCTAGCCATTATTTCATGTATAC 57.403 36.000 9.66 0.00 0.00 1.47
538 1145 7.173562 AGACGGAGCAGTATGATAAGTACTAAG 59.826 40.741 0.00 0.00 39.69 2.18
741 4580 4.495690 TGGTCAATCAATATGGAACGGA 57.504 40.909 0.00 0.00 0.00 4.69
835 4687 2.590092 GCCGGATGCCACCTAACT 59.410 61.111 5.05 0.00 0.00 2.24
844 4696 4.162690 AGAAGACCCGCCGGATGC 62.163 66.667 5.05 0.00 0.00 3.91
856 4709 4.180946 GGCGCGCGAGAGAGAAGA 62.181 66.667 37.18 0.00 0.00 2.87
959 4828 1.436195 CTCCCTCTCTCACTCTCGCG 61.436 65.000 0.00 0.00 0.00 5.87
979 4864 0.387112 GCTCTCGATCTGATGCCTCG 60.387 60.000 0.00 0.00 0.00 4.63
1047 4932 3.416156 GGTCTCAAGCTTCTCCATGTTT 58.584 45.455 0.00 0.00 0.00 2.83
1111 4996 2.237392 CCTCGAAGAATCCCCAGTTCTT 59.763 50.000 1.12 1.12 45.77 2.52
1183 5069 8.148351 TCGTACTTATGCCTGCTTTCTATAAAT 58.852 33.333 0.00 0.00 0.00 1.40
1187 5084 5.531122 TCGTACTTATGCCTGCTTTCTAT 57.469 39.130 0.00 0.00 0.00 1.98
1233 5185 3.791353 GCAACCAGAATTTATAAGTGCGC 59.209 43.478 0.00 0.00 0.00 6.09
1235 5187 4.800471 GCTGCAACCAGAATTTATAAGTGC 59.200 41.667 0.00 0.00 41.77 4.40
1236 5188 6.032094 CAGCTGCAACCAGAATTTATAAGTG 58.968 40.000 0.00 0.00 41.77 3.16
1237 5189 5.393461 GCAGCTGCAACCAGAATTTATAAGT 60.393 40.000 33.36 0.00 41.77 2.24
1238 5190 5.039333 GCAGCTGCAACCAGAATTTATAAG 58.961 41.667 33.36 0.00 41.77 1.73
1239 5191 4.706476 AGCAGCTGCAACCAGAATTTATAA 59.294 37.500 38.24 0.00 45.16 0.98
1240 5192 4.096833 CAGCAGCTGCAACCAGAATTTATA 59.903 41.667 38.24 0.00 45.16 0.98
1241 5193 3.094572 AGCAGCTGCAACCAGAATTTAT 58.905 40.909 38.24 11.97 45.16 1.40
1242 5194 2.229543 CAGCAGCTGCAACCAGAATTTA 59.770 45.455 38.24 0.00 45.16 1.40
1243 5195 1.000506 CAGCAGCTGCAACCAGAATTT 59.999 47.619 38.24 12.75 45.16 1.82
1244 5196 0.601558 CAGCAGCTGCAACCAGAATT 59.398 50.000 38.24 13.55 45.16 2.17
1245 5197 0.251033 TCAGCAGCTGCAACCAGAAT 60.251 50.000 38.24 14.33 45.16 2.40
1246 5198 0.466007 TTCAGCAGCTGCAACCAGAA 60.466 50.000 38.24 27.26 45.16 3.02
1247 5199 1.148949 TTCAGCAGCTGCAACCAGA 59.851 52.632 38.24 23.71 45.16 3.86
1248 5200 1.285023 GTTCAGCAGCTGCAACCAG 59.715 57.895 38.24 21.96 45.16 4.00
1249 5201 2.195567 GGTTCAGCAGCTGCAACCA 61.196 57.895 37.38 21.10 45.16 3.67
1250 5202 1.530013 ATGGTTCAGCAGCTGCAACC 61.530 55.000 36.52 36.52 45.16 3.77
1251 5203 0.388134 CATGGTTCAGCAGCTGCAAC 60.388 55.000 38.24 31.38 45.16 4.17
1282 5234 2.941415 GCTCCACCTCGTCCATCAATTT 60.941 50.000 0.00 0.00 0.00 1.82
1284 5236 0.179000 GCTCCACCTCGTCCATCAAT 59.821 55.000 0.00 0.00 0.00 2.57
1285 5237 1.596934 GCTCCACCTCGTCCATCAA 59.403 57.895 0.00 0.00 0.00 2.57
1525 5492 4.082136 AGTTAGTGACCAAGTAGCAGTAGC 60.082 45.833 0.00 0.00 42.56 3.58
1617 5710 4.691216 GCCTGAATCGTCTCTGTACTTTTT 59.309 41.667 0.00 0.00 0.00 1.94
1638 5731 0.389025 CTTGTGAACCAAACAGGGCC 59.611 55.000 0.00 0.00 43.89 5.80
1639 5732 1.067060 GACTTGTGAACCAAACAGGGC 59.933 52.381 0.00 0.00 43.89 5.19
1640 5733 1.681264 GGACTTGTGAACCAAACAGGG 59.319 52.381 0.00 0.00 43.89 4.45
1641 5734 2.654863 AGGACTTGTGAACCAAACAGG 58.345 47.619 0.00 0.00 45.67 4.00
1642 5735 4.703897 TCTAGGACTTGTGAACCAAACAG 58.296 43.478 0.00 0.00 31.20 3.16
1643 5736 4.764050 TCTAGGACTTGTGAACCAAACA 57.236 40.909 0.00 0.00 31.20 2.83
1644 5737 5.123936 AGTTCTAGGACTTGTGAACCAAAC 58.876 41.667 0.00 0.00 39.45 2.93
1645 5738 5.367945 AGTTCTAGGACTTGTGAACCAAA 57.632 39.130 0.00 0.00 39.45 3.28
1646 5739 5.367945 AAGTTCTAGGACTTGTGAACCAA 57.632 39.130 15.98 0.00 38.39 3.67
1647 5740 5.367945 AAAGTTCTAGGACTTGTGAACCA 57.632 39.130 17.40 0.00 39.68 3.67
1648 5741 6.694877 AAAAAGTTCTAGGACTTGTGAACC 57.305 37.500 17.40 0.00 39.68 3.62
1675 5768 7.962598 AGGGACTTGAAACTTATAAGTTGGGAC 60.963 40.741 27.29 19.11 42.47 4.46
1676 5769 6.045106 AGGGACTTGAAACTTATAAGTTGGGA 59.955 38.462 27.29 16.12 42.47 4.37
1677 5770 6.246163 AGGGACTTGAAACTTATAAGTTGGG 58.754 40.000 27.29 19.26 42.47 4.12
1678 5771 8.857694 TTAGGGACTTGAAACTTATAAGTTGG 57.142 34.615 27.29 19.53 44.05 3.77
1686 5779 9.470399 AGAAACTTTTTAGGGACTTGAAACTTA 57.530 29.630 0.00 0.00 41.75 2.24
1687 5780 8.362464 AGAAACTTTTTAGGGACTTGAAACTT 57.638 30.769 0.00 0.00 41.75 2.66
1688 5781 7.956328 AGAAACTTTTTAGGGACTTGAAACT 57.044 32.000 0.00 0.00 41.75 2.66
1689 5782 8.680001 TGTAGAAACTTTTTAGGGACTTGAAAC 58.320 33.333 0.00 0.00 41.75 2.78
1690 5783 8.810990 TGTAGAAACTTTTTAGGGACTTGAAA 57.189 30.769 0.00 0.00 41.75 2.69
1691 5784 8.846211 CATGTAGAAACTTTTTAGGGACTTGAA 58.154 33.333 0.00 0.00 41.75 2.69
1692 5785 7.996644 ACATGTAGAAACTTTTTAGGGACTTGA 59.003 33.333 0.00 0.00 41.75 3.02
1693 5786 8.166422 ACATGTAGAAACTTTTTAGGGACTTG 57.834 34.615 0.00 0.00 41.75 3.16
1694 5787 8.762481 AACATGTAGAAACTTTTTAGGGACTT 57.238 30.769 0.00 0.00 41.75 3.01
1695 5788 8.630037 CAAACATGTAGAAACTTTTTAGGGACT 58.370 33.333 0.00 0.00 46.37 3.85
1696 5789 7.865889 CCAAACATGTAGAAACTTTTTAGGGAC 59.134 37.037 0.00 0.00 0.00 4.46
1697 5790 7.562088 ACCAAACATGTAGAAACTTTTTAGGGA 59.438 33.333 0.00 0.00 0.00 4.20
1698 5791 7.722363 ACCAAACATGTAGAAACTTTTTAGGG 58.278 34.615 0.00 0.00 0.00 3.53
1703 5796 9.541143 CCAATAACCAAACATGTAGAAACTTTT 57.459 29.630 0.00 0.00 0.00 2.27
1704 5797 8.147704 CCCAATAACCAAACATGTAGAAACTTT 58.852 33.333 0.00 0.00 0.00 2.66
1705 5798 7.507616 TCCCAATAACCAAACATGTAGAAACTT 59.492 33.333 0.00 0.00 0.00 2.66
1706 5799 7.007723 TCCCAATAACCAAACATGTAGAAACT 58.992 34.615 0.00 0.00 0.00 2.66
1707 5800 7.039993 AGTCCCAATAACCAAACATGTAGAAAC 60.040 37.037 0.00 0.00 0.00 2.78
1710 5803 6.134535 AGTCCCAATAACCAAACATGTAGA 57.865 37.500 0.00 0.00 0.00 2.59
1737 5835 9.448587 AGTTGTAATATGGTCTTATAGGGACTT 57.551 33.333 7.52 0.00 41.75 3.01
1758 5856 9.577222 GAGAGTCTTATAGGGACTTATAGTTGT 57.423 37.037 10.43 0.00 43.13 3.32
1760 5858 8.962205 AGGAGAGTCTTATAGGGACTTATAGTT 58.038 37.037 10.43 0.00 43.13 2.24
1766 5864 7.884891 TCTTAAGGAGAGTCTTATAGGGACTT 58.115 38.462 1.85 0.00 43.13 3.01
1767 5865 7.468752 TCTTAAGGAGAGTCTTATAGGGACT 57.531 40.000 1.85 9.30 45.37 3.85
1768 5866 7.754851 CTCTTAAGGAGAGTCTTATAGGGAC 57.245 44.000 1.85 0.00 45.69 4.46
1799 5897 4.922206 AGTGGGCATTTGAGACTTATCAA 58.078 39.130 0.00 0.00 37.41 2.57
1800 5898 4.574674 AGTGGGCATTTGAGACTTATCA 57.425 40.909 0.00 0.00 0.00 2.15
1801 5899 5.904362 AAAGTGGGCATTTGAGACTTATC 57.096 39.130 0.00 0.00 0.00 1.75
1802 5900 6.948309 ACTTAAAGTGGGCATTTGAGACTTAT 59.052 34.615 7.52 0.00 30.26 1.73
1803 5901 6.303839 ACTTAAAGTGGGCATTTGAGACTTA 58.696 36.000 7.52 0.00 30.26 2.24
1804 5902 5.140454 ACTTAAAGTGGGCATTTGAGACTT 58.860 37.500 7.52 0.00 30.26 3.01
1805 5903 4.729868 ACTTAAAGTGGGCATTTGAGACT 58.270 39.130 7.52 0.00 30.26 3.24
1806 5904 4.082733 GGACTTAAAGTGGGCATTTGAGAC 60.083 45.833 7.52 2.89 30.26 3.36
1807 5905 4.079253 GGACTTAAAGTGGGCATTTGAGA 58.921 43.478 7.52 0.00 30.26 3.27
1808 5906 3.193479 GGGACTTAAAGTGGGCATTTGAG 59.807 47.826 0.00 0.00 31.53 3.02
1809 5907 3.161866 GGGACTTAAAGTGGGCATTTGA 58.838 45.455 0.00 0.00 0.00 2.69
1810 5908 3.165071 AGGGACTTAAAGTGGGCATTTG 58.835 45.455 0.00 0.00 27.25 2.32
1811 5909 3.542969 AGGGACTTAAAGTGGGCATTT 57.457 42.857 0.00 0.00 27.25 2.32
1812 5910 4.881157 ATAGGGACTTAAAGTGGGCATT 57.119 40.909 0.00 0.00 41.75 3.56
1813 5911 5.432060 ACTTATAGGGACTTAAAGTGGGCAT 59.568 40.000 0.00 0.00 39.58 4.40
1814 5912 4.786454 ACTTATAGGGACTTAAAGTGGGCA 59.214 41.667 0.00 0.00 39.58 5.36
1815 5913 5.366460 GACTTATAGGGACTTAAAGTGGGC 58.634 45.833 0.00 0.00 40.60 5.36
1816 5914 5.163227 GGGACTTATAGGGACTTAAAGTGGG 60.163 48.000 0.00 0.00 40.60 4.61
1817 5915 5.666265 AGGGACTTATAGGGACTTAAAGTGG 59.334 44.000 0.00 0.00 40.60 4.00
1818 5916 6.809976 AGGGACTTATAGGGACTTAAAGTG 57.190 41.667 0.00 0.00 40.60 3.16
1835 5933 8.670923 CCCATCTAAACCAAACAGAAGGGACT 62.671 46.154 5.40 0.00 45.96 3.85
1836 5934 4.459337 CCATCTAAACCAAACAGAAGGGAC 59.541 45.833 0.00 0.00 0.00 4.46
1837 5935 4.508405 CCCATCTAAACCAAACAGAAGGGA 60.508 45.833 5.40 0.00 45.96 4.20
1838 5936 3.763897 CCCATCTAAACCAAACAGAAGGG 59.236 47.826 0.00 0.00 40.03 3.95
1839 5937 4.459337 GTCCCATCTAAACCAAACAGAAGG 59.541 45.833 0.00 0.00 0.00 3.46
1840 5938 5.316987 AGTCCCATCTAAACCAAACAGAAG 58.683 41.667 0.00 0.00 0.00 2.85
1841 5939 5.319043 AGTCCCATCTAAACCAAACAGAA 57.681 39.130 0.00 0.00 0.00 3.02
1842 5940 4.993705 AGTCCCATCTAAACCAAACAGA 57.006 40.909 0.00 0.00 0.00 3.41
1843 5941 7.499232 CCTATAAGTCCCATCTAAACCAAACAG 59.501 40.741 0.00 0.00 0.00 3.16
1844 5942 7.343357 CCTATAAGTCCCATCTAAACCAAACA 58.657 38.462 0.00 0.00 0.00 2.83
1845 5943 6.771267 CCCTATAAGTCCCATCTAAACCAAAC 59.229 42.308 0.00 0.00 0.00 2.93
1846 5944 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
1847 5945 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
1848 5946 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
1849 5947 5.845065 AGTCCCTATAAGTCCCATCTAAACC 59.155 44.000 0.00 0.00 0.00 3.27
1850 5948 6.997942 AGTCCCTATAAGTCCCATCTAAAC 57.002 41.667 0.00 0.00 0.00 2.01
1851 5949 7.371043 AGAAGTCCCTATAAGTCCCATCTAAA 58.629 38.462 0.00 0.00 0.00 1.85
1852 5950 6.935036 AGAAGTCCCTATAAGTCCCATCTAA 58.065 40.000 0.00 0.00 0.00 2.10
1853 5951 6.547396 AGAAGTCCCTATAAGTCCCATCTA 57.453 41.667 0.00 0.00 0.00 1.98
1854 5952 5.426325 AGAAGTCCCTATAAGTCCCATCT 57.574 43.478 0.00 0.00 0.00 2.90
1855 5953 6.502074 AAAGAAGTCCCTATAAGTCCCATC 57.498 41.667 0.00 0.00 0.00 3.51
1856 5954 7.628101 ACTTAAAGAAGTCCCTATAAGTCCCAT 59.372 37.037 0.00 0.00 42.50 4.00
1857 5955 6.964086 ACTTAAAGAAGTCCCTATAAGTCCCA 59.036 38.462 0.00 0.00 42.50 4.37
1858 5956 7.434927 ACTTAAAGAAGTCCCTATAAGTCCC 57.565 40.000 0.00 0.00 42.50 4.46
1872 5970 9.516546 ACTTATTGGTTTAGGGACTTAAAGAAG 57.483 33.333 0.00 0.00 41.75 2.85
1873 5971 9.511272 GACTTATTGGTTTAGGGACTTAAAGAA 57.489 33.333 0.00 0.00 41.75 2.52
1874 5972 8.105197 GGACTTATTGGTTTAGGGACTTAAAGA 58.895 37.037 0.00 0.00 41.75 2.52
1875 5973 7.338703 GGGACTTATTGGTTTAGGGACTTAAAG 59.661 40.741 0.00 0.00 41.75 1.85
1876 5974 7.018851 AGGGACTTATTGGTTTAGGGACTTAAA 59.981 37.037 0.00 0.00 34.75 1.52
1877 5975 6.506413 AGGGACTTATTGGTTTAGGGACTTAA 59.494 38.462 0.00 0.00 34.75 1.85
1878 5976 6.034003 AGGGACTTATTGGTTTAGGGACTTA 58.966 40.000 0.00 0.00 34.75 2.24
1879 5977 4.856182 AGGGACTTATTGGTTTAGGGACTT 59.144 41.667 0.00 0.00 34.75 3.01
1880 5978 4.227527 CAGGGACTTATTGGTTTAGGGACT 59.772 45.833 0.00 0.00 39.39 3.85
1881 5979 4.226620 TCAGGGACTTATTGGTTTAGGGAC 59.773 45.833 0.00 0.00 34.60 4.46
1882 5980 4.440808 TCAGGGACTTATTGGTTTAGGGA 58.559 43.478 0.00 0.00 34.60 4.20
1883 5981 4.855298 TCAGGGACTTATTGGTTTAGGG 57.145 45.455 0.00 0.00 34.60 3.53
1884 5982 6.492087 TGTTTTCAGGGACTTATTGGTTTAGG 59.508 38.462 0.00 0.00 34.60 2.69
1885 5983 7.519032 TGTTTTCAGGGACTTATTGGTTTAG 57.481 36.000 0.00 0.00 34.60 1.85
1886 5984 7.899648 TTGTTTTCAGGGACTTATTGGTTTA 57.100 32.000 0.00 0.00 34.60 2.01
1887 5985 6.800072 TTGTTTTCAGGGACTTATTGGTTT 57.200 33.333 0.00 0.00 34.60 3.27
1888 5986 6.155393 TGTTTGTTTTCAGGGACTTATTGGTT 59.845 34.615 0.00 0.00 34.60 3.67
1889 5987 5.659079 TGTTTGTTTTCAGGGACTTATTGGT 59.341 36.000 0.00 0.00 34.60 3.67
1890 5988 6.155475 TGTTTGTTTTCAGGGACTTATTGG 57.845 37.500 0.00 0.00 34.60 3.16
1891 5989 5.691754 GCTGTTTGTTTTCAGGGACTTATTG 59.308 40.000 0.00 0.00 34.60 1.90
1892 5990 5.221441 GGCTGTTTGTTTTCAGGGACTTATT 60.221 40.000 0.00 0.00 34.60 1.40
1893 5991 4.280929 GGCTGTTTGTTTTCAGGGACTTAT 59.719 41.667 0.00 0.00 34.60 1.73
1894 5992 3.634910 GGCTGTTTGTTTTCAGGGACTTA 59.365 43.478 0.00 0.00 34.60 2.24
1895 5993 2.430694 GGCTGTTTGTTTTCAGGGACTT 59.569 45.455 0.00 0.00 34.60 3.01
1896 5994 2.031870 GGCTGTTTGTTTTCAGGGACT 58.968 47.619 0.00 0.00 43.88 3.85
1897 5995 2.031870 AGGCTGTTTGTTTTCAGGGAC 58.968 47.619 0.00 0.00 32.94 4.46
1898 5996 2.091885 AGAGGCTGTTTGTTTTCAGGGA 60.092 45.455 0.00 0.00 32.94 4.20
1899 5997 2.294512 GAGAGGCTGTTTGTTTTCAGGG 59.705 50.000 0.00 0.00 32.94 4.45
1900 5998 2.951642 TGAGAGGCTGTTTGTTTTCAGG 59.048 45.455 0.00 0.00 32.94 3.86
1901 5999 4.843220 ATGAGAGGCTGTTTGTTTTCAG 57.157 40.909 0.00 0.00 35.12 3.02
1902 6000 5.596836 AAATGAGAGGCTGTTTGTTTTCA 57.403 34.783 0.00 0.00 0.00 2.69
1903 6001 5.812127 ACAAAATGAGAGGCTGTTTGTTTTC 59.188 36.000 0.00 0.00 38.85 2.29
1904 6002 5.733676 ACAAAATGAGAGGCTGTTTGTTTT 58.266 33.333 0.00 0.00 38.85 2.43
1905 6003 5.343307 ACAAAATGAGAGGCTGTTTGTTT 57.657 34.783 0.00 0.00 38.85 2.83
1906 6004 5.594317 AGTACAAAATGAGAGGCTGTTTGTT 59.406 36.000 4.98 0.00 41.37 2.83
1907 6005 5.009010 CAGTACAAAATGAGAGGCTGTTTGT 59.991 40.000 0.00 0.00 43.05 2.83
1908 6006 5.009010 ACAGTACAAAATGAGAGGCTGTTTG 59.991 40.000 0.00 0.00 32.84 2.93
1909 6007 5.133221 ACAGTACAAAATGAGAGGCTGTTT 58.867 37.500 0.00 0.00 32.84 2.83
1910 6008 4.718961 ACAGTACAAAATGAGAGGCTGTT 58.281 39.130 0.00 0.00 32.84 3.16
1911 6009 4.202357 TGACAGTACAAAATGAGAGGCTGT 60.202 41.667 0.00 0.00 38.45 4.40
1912 6010 4.318332 TGACAGTACAAAATGAGAGGCTG 58.682 43.478 0.00 0.00 0.00 4.85
1913 6011 4.284490 TCTGACAGTACAAAATGAGAGGCT 59.716 41.667 1.59 0.00 0.00 4.58
1914 6012 4.569943 TCTGACAGTACAAAATGAGAGGC 58.430 43.478 1.59 0.00 0.00 4.70
1915 6013 6.708054 ACTTTCTGACAGTACAAAATGAGAGG 59.292 38.462 1.59 0.00 0.00 3.69
1916 6014 7.439356 TGACTTTCTGACAGTACAAAATGAGAG 59.561 37.037 1.59 0.00 0.00 3.20
1917 6015 7.272244 TGACTTTCTGACAGTACAAAATGAGA 58.728 34.615 1.59 0.00 0.00 3.27
1918 6016 7.482654 TGACTTTCTGACAGTACAAAATGAG 57.517 36.000 1.59 0.00 0.00 2.90
1919 6017 8.450578 AATGACTTTCTGACAGTACAAAATGA 57.549 30.769 1.59 0.00 0.00 2.57
2027 6145 7.067372 TGTGCTTAATTTAGGATTCTGATGTGG 59.933 37.037 0.00 0.00 0.00 4.17
2388 6582 1.962822 CGTCCTTGAGCAGCTGCAA 60.963 57.895 38.24 24.17 45.16 4.08
2700 6894 1.275291 CTCCTTGGCCTCGAACTTGTA 59.725 52.381 3.32 0.00 0.00 2.41
2813 7011 3.431912 GGCACGCCCAAAAGAAAATAAAG 59.568 43.478 0.00 0.00 0.00 1.85
2888 7087 4.079970 ACAAGAATCTGTGAGTCGGACTA 58.920 43.478 11.27 0.00 33.92 2.59
2954 9048 1.993370 CCTAGCTTCACGTAACAGCAC 59.007 52.381 13.53 0.00 35.88 4.40
2970 9064 1.863454 CATGCAAACGCTAGCTCCTAG 59.137 52.381 13.93 0.00 37.16 3.02
2978 9072 0.953471 AAGTCGCCATGCAAACGCTA 60.953 50.000 0.00 0.00 0.00 4.26
2979 9073 1.795170 AAAGTCGCCATGCAAACGCT 61.795 50.000 0.00 0.00 0.00 5.07
2980 9074 0.939106 AAAAGTCGCCATGCAAACGC 60.939 50.000 0.00 0.00 0.00 4.84
2981 9075 0.777631 CAAAAGTCGCCATGCAAACG 59.222 50.000 0.00 0.00 0.00 3.60
3009 9103 3.383761 ACCGACGACAGAAAATAAACGT 58.616 40.909 0.00 0.00 36.71 3.99
3010 9104 3.426191 TGACCGACGACAGAAAATAAACG 59.574 43.478 0.00 0.00 0.00 3.60
3016 9111 2.519377 ACATGACCGACGACAGAAAA 57.481 45.000 0.00 0.00 0.00 2.29
3130 9547 3.384789 AGATCAACTCGCTAGCAACCATA 59.615 43.478 16.45 0.00 0.00 2.74
3235 11304 3.733224 CGAAAAATGTTCGTTTGCCATCA 59.267 39.130 0.00 0.00 37.18 3.07
3236 11305 3.421698 GCGAAAAATGTTCGTTTGCCATC 60.422 43.478 7.44 0.00 43.24 3.51
3245 11314 1.335935 ATTGCCGCGAAAAATGTTCG 58.664 45.000 8.23 0.39 44.06 3.95
3246 11315 2.728839 TCAATTGCCGCGAAAAATGTTC 59.271 40.909 8.23 0.00 0.00 3.18
3371 11824 8.807667 ATGTCTTTTACAGCAATTTCTTCAAG 57.192 30.769 0.00 0.00 42.70 3.02
3380 11833 6.882610 TCTGTGAATGTCTTTTACAGCAAT 57.117 33.333 14.92 0.00 46.34 3.56
3402 11856 1.312815 GTTCTGGGTAGCATGGCATC 58.687 55.000 0.00 0.00 0.00 3.91
3423 11877 1.009829 GGACCACAATAGCAAGCGAG 58.990 55.000 0.00 0.00 0.00 5.03
3429 11883 3.417101 ACGATTTTGGACCACAATAGCA 58.583 40.909 11.97 0.00 39.21 3.49
3437 11891 3.666274 ACGATGTAACGATTTTGGACCA 58.334 40.909 0.00 0.00 37.03 4.02
3486 12156 7.718645 GAATGACCTATTCACCGAGACGGAG 62.719 52.000 16.99 9.14 45.73 4.63
3488 12158 3.795826 GAATGACCTATTCACCGAGACGG 60.796 52.174 8.67 8.67 43.79 4.79
3489 12159 3.372954 GAATGACCTATTCACCGAGACG 58.627 50.000 0.00 0.00 43.79 4.18
3490 12160 3.372954 CGAATGACCTATTCACCGAGAC 58.627 50.000 0.00 0.00 44.42 3.36
3491 12161 2.223735 GCGAATGACCTATTCACCGAGA 60.224 50.000 0.00 0.00 44.42 4.04
3492 12162 2.128035 GCGAATGACCTATTCACCGAG 58.872 52.381 0.00 0.00 44.42 4.63
3493 12163 1.535226 CGCGAATGACCTATTCACCGA 60.535 52.381 0.00 0.00 44.42 4.69
3494 12164 0.852777 CGCGAATGACCTATTCACCG 59.147 55.000 0.00 0.00 44.42 4.94
3495 12165 1.935933 ACGCGAATGACCTATTCACC 58.064 50.000 15.93 0.00 44.42 4.02
3496 12166 3.703420 ACTACGCGAATGACCTATTCAC 58.297 45.455 15.93 0.00 44.42 3.18
3497 12167 4.380841 AACTACGCGAATGACCTATTCA 57.619 40.909 15.93 0.00 44.42 2.57
3498 12168 5.713822 AAAACTACGCGAATGACCTATTC 57.286 39.130 15.93 0.00 41.46 1.75
3499 12169 5.751990 CCTAAAACTACGCGAATGACCTATT 59.248 40.000 15.93 0.00 0.00 1.73
3500 12170 5.163478 ACCTAAAACTACGCGAATGACCTAT 60.163 40.000 15.93 0.00 0.00 2.57
3501 12171 4.158394 ACCTAAAACTACGCGAATGACCTA 59.842 41.667 15.93 0.00 0.00 3.08
3502 12172 3.056322 ACCTAAAACTACGCGAATGACCT 60.056 43.478 15.93 0.00 0.00 3.85
3503 12173 3.256558 ACCTAAAACTACGCGAATGACC 58.743 45.455 15.93 0.00 0.00 4.02
3504 12174 3.922240 TGACCTAAAACTACGCGAATGAC 59.078 43.478 15.93 0.00 0.00 3.06
3505 12175 4.177165 TGACCTAAAACTACGCGAATGA 57.823 40.909 15.93 0.00 0.00 2.57
3506 12176 4.634991 GTTGACCTAAAACTACGCGAATG 58.365 43.478 15.93 4.47 0.00 2.67
3507 12177 3.365820 CGTTGACCTAAAACTACGCGAAT 59.634 43.478 15.93 0.00 0.00 3.34
3508 12178 2.725723 CGTTGACCTAAAACTACGCGAA 59.274 45.455 15.93 0.00 0.00 4.70
3509 12179 2.031245 TCGTTGACCTAAAACTACGCGA 60.031 45.455 15.93 0.00 35.88 5.87
3510 12180 2.318578 TCGTTGACCTAAAACTACGCG 58.681 47.619 3.53 3.53 35.88 6.01
3511 12181 4.916099 AATCGTTGACCTAAAACTACGC 57.084 40.909 0.00 0.00 35.88 4.42
3512 12182 6.456447 TCAAATCGTTGACCTAAAACTACG 57.544 37.500 0.00 0.00 38.88 3.51
3634 12304 9.893634 TGTTAGGTCATCGATTTAAGGAATTAA 57.106 29.630 0.00 0.00 0.00 1.40
3635 12305 9.321562 GTGTTAGGTCATCGATTTAAGGAATTA 57.678 33.333 0.00 0.00 0.00 1.40
3636 12306 8.047310 AGTGTTAGGTCATCGATTTAAGGAATT 58.953 33.333 0.00 0.00 0.00 2.17
3637 12307 7.565680 AGTGTTAGGTCATCGATTTAAGGAAT 58.434 34.615 0.00 0.00 0.00 3.01
3638 12308 6.942976 AGTGTTAGGTCATCGATTTAAGGAA 58.057 36.000 0.00 0.00 0.00 3.36
3639 12309 6.540438 AGTGTTAGGTCATCGATTTAAGGA 57.460 37.500 0.00 0.00 0.00 3.36
3640 12310 7.042658 GCTTAGTGTTAGGTCATCGATTTAAGG 60.043 40.741 0.00 0.00 0.00 2.69
3641 12311 7.306051 CGCTTAGTGTTAGGTCATCGATTTAAG 60.306 40.741 0.00 0.00 0.00 1.85
3642 12312 6.474427 CGCTTAGTGTTAGGTCATCGATTTAA 59.526 38.462 0.00 0.00 0.00 1.52
3643 12313 5.975344 CGCTTAGTGTTAGGTCATCGATTTA 59.025 40.000 0.00 0.00 0.00 1.40
3644 12314 4.804139 CGCTTAGTGTTAGGTCATCGATTT 59.196 41.667 0.00 0.00 0.00 2.17
3645 12315 4.097437 TCGCTTAGTGTTAGGTCATCGATT 59.903 41.667 0.00 0.00 0.00 3.34
3646 12316 3.630769 TCGCTTAGTGTTAGGTCATCGAT 59.369 43.478 0.00 0.00 0.00 3.59
3647 12317 3.011818 TCGCTTAGTGTTAGGTCATCGA 58.988 45.455 0.00 0.00 0.00 3.59
3648 12318 3.416119 TCGCTTAGTGTTAGGTCATCG 57.584 47.619 0.00 0.00 0.00 3.84
3649 12319 5.232414 GTCATTCGCTTAGTGTTAGGTCATC 59.768 44.000 0.00 0.00 0.00 2.92
3650 12320 5.105310 AGTCATTCGCTTAGTGTTAGGTCAT 60.105 40.000 0.00 0.00 0.00 3.06
3651 12321 4.219944 AGTCATTCGCTTAGTGTTAGGTCA 59.780 41.667 0.00 0.00 0.00 4.02
3652 12322 4.745649 AGTCATTCGCTTAGTGTTAGGTC 58.254 43.478 0.00 0.00 0.00 3.85
3653 12323 4.803098 AGTCATTCGCTTAGTGTTAGGT 57.197 40.909 0.00 0.00 0.00 3.08
3654 12324 6.331061 AGTAAGTCATTCGCTTAGTGTTAGG 58.669 40.000 0.00 0.00 32.62 2.69
3655 12325 7.008447 GTGAGTAAGTCATTCGCTTAGTGTTAG 59.992 40.741 0.00 0.00 37.56 2.34
3656 12326 6.805271 GTGAGTAAGTCATTCGCTTAGTGTTA 59.195 38.462 0.00 0.00 37.56 2.41
3657 12327 5.634020 GTGAGTAAGTCATTCGCTTAGTGTT 59.366 40.000 0.00 0.00 37.56 3.32
3658 12328 5.162075 GTGAGTAAGTCATTCGCTTAGTGT 58.838 41.667 0.00 0.00 37.56 3.55
3659 12329 4.563184 GGTGAGTAAGTCATTCGCTTAGTG 59.437 45.833 0.00 0.00 37.56 2.74
3660 12330 4.463186 AGGTGAGTAAGTCATTCGCTTAGT 59.537 41.667 0.00 0.00 37.56 2.24
3661 12331 5.000012 AGGTGAGTAAGTCATTCGCTTAG 58.000 43.478 0.00 0.00 37.56 2.18
3662 12332 5.884232 TCTAGGTGAGTAAGTCATTCGCTTA 59.116 40.000 0.00 0.00 37.56 3.09
3663 12333 3.963428 AGGTGAGTAAGTCATTCGCTT 57.037 42.857 0.00 0.00 37.56 4.68
3664 12334 4.270834 TCTAGGTGAGTAAGTCATTCGCT 58.729 43.478 0.00 0.00 37.56 4.93
3665 12335 4.634184 TCTAGGTGAGTAAGTCATTCGC 57.366 45.455 0.00 0.00 37.56 4.70
3666 12336 5.299531 TCCATCTAGGTGAGTAAGTCATTCG 59.700 44.000 3.99 0.00 37.56 3.34
3667 12337 6.716934 TCCATCTAGGTGAGTAAGTCATTC 57.283 41.667 3.99 0.00 37.56 2.67
3668 12338 6.613271 ACATCCATCTAGGTGAGTAAGTCATT 59.387 38.462 3.99 0.00 37.56 2.57
3669 12339 6.139671 ACATCCATCTAGGTGAGTAAGTCAT 58.860 40.000 3.99 0.00 37.56 3.06
3670 12340 5.519808 ACATCCATCTAGGTGAGTAAGTCA 58.480 41.667 3.99 0.00 39.02 3.41
3671 12341 5.278071 CGACATCCATCTAGGTGAGTAAGTC 60.278 48.000 3.99 4.54 39.02 3.01
3672 12342 4.580995 CGACATCCATCTAGGTGAGTAAGT 59.419 45.833 3.99 0.00 39.02 2.24
3673 12343 4.580995 ACGACATCCATCTAGGTGAGTAAG 59.419 45.833 3.99 1.51 39.02 2.34
3674 12344 4.533815 ACGACATCCATCTAGGTGAGTAA 58.466 43.478 3.99 0.00 39.02 2.24
3675 12345 4.166246 ACGACATCCATCTAGGTGAGTA 57.834 45.455 3.99 0.00 39.02 2.59
3676 12346 3.019799 ACGACATCCATCTAGGTGAGT 57.980 47.619 3.99 0.00 39.02 3.41
3677 12347 5.705905 TGTATACGACATCCATCTAGGTGAG 59.294 44.000 3.99 0.00 33.65 3.51
3678 12348 5.627135 TGTATACGACATCCATCTAGGTGA 58.373 41.667 3.99 0.00 33.65 4.02
3679 12349 5.959618 TGTATACGACATCCATCTAGGTG 57.040 43.478 0.00 0.00 33.65 4.00
3680 12350 8.687242 CATATTGTATACGACATCCATCTAGGT 58.313 37.037 0.00 0.00 38.07 3.08
3681 12351 8.903820 TCATATTGTATACGACATCCATCTAGG 58.096 37.037 0.00 0.00 38.07 3.02
3682 12352 9.943163 CTCATATTGTATACGACATCCATCTAG 57.057 37.037 0.00 0.00 38.07 2.43
3683 12353 9.462606 ACTCATATTGTATACGACATCCATCTA 57.537 33.333 0.00 0.00 38.07 1.98
3684 12354 8.354711 ACTCATATTGTATACGACATCCATCT 57.645 34.615 0.00 0.00 38.07 2.90
3685 12355 8.988064 AACTCATATTGTATACGACATCCATC 57.012 34.615 0.00 0.00 38.07 3.51
3700 12370 9.778993 GGCATGCATAGTTAATAACTCATATTG 57.221 33.333 21.36 5.22 41.77 1.90
3736 12506 5.931146 TGTGAAAAGAAAGTGCAACAATTGT 59.069 32.000 4.92 4.92 41.43 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.