Multiple sequence alignment - TraesCS6D01G305300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G305300 chr6D 100.000 2321 0 0 1 2321 414242646 414240326 0.000000e+00 4287
1 TraesCS6D01G305300 chr6D 92.829 251 10 5 1949 2198 414106725 414106482 7.890000e-95 357
2 TraesCS6D01G305300 chr6D 89.167 120 12 1 2202 2321 414105382 414105264 5.170000e-32 148
3 TraesCS6D01G305300 chr6D 97.222 72 2 0 1849 1920 414106791 414106720 3.130000e-24 122
4 TraesCS6D01G305300 chr7B 84.227 951 77 31 413 1350 609703610 609704500 0.000000e+00 857
5 TraesCS6D01G305300 chr7B 86.878 442 27 11 9 425 609701349 609701784 1.260000e-127 466
6 TraesCS6D01G305300 chr7B 81.094 640 63 23 701 1312 130120411 130121020 2.100000e-125 459
7 TraesCS6D01G305300 chr7B 79.398 631 66 27 700 1312 130504231 130503647 1.010000e-103 387
8 TraesCS6D01G305300 chr6B 91.232 479 34 4 1849 2321 624478829 624478353 0.000000e+00 645
9 TraesCS6D01G305300 chr6B 93.075 361 19 5 1849 2205 624231832 624231474 7.350000e-145 523
10 TraesCS6D01G305300 chr6B 94.845 291 12 3 1852 2142 624398510 624398223 3.520000e-123 451
11 TraesCS6D01G305300 chr7D 83.594 512 59 6 818 1312 166204397 166203894 7.560000e-125 457
12 TraesCS6D01G305300 chr7D 80.435 644 72 28 701 1312 165944418 165945039 2.120000e-120 442
13 TraesCS6D01G305300 chr7A 82.913 515 67 6 818 1312 167680410 167680923 5.880000e-121 444
14 TraesCS6D01G305300 chr7A 82.895 456 51 7 877 1312 167736240 167735792 3.620000e-103 385
15 TraesCS6D01G305300 chr5B 92.357 157 9 3 1653 1808 612083094 612083248 1.080000e-53 220
16 TraesCS6D01G305300 chr5B 92.357 157 9 3 1653 1808 612083779 612083933 1.080000e-53 220
17 TraesCS6D01G305300 chr5B 91.772 158 11 2 1652 1808 344318777 344318621 3.880000e-53 219
18 TraesCS6D01G305300 chr4B 91.772 158 10 3 1652 1808 623109762 623109917 1.400000e-52 217
19 TraesCS6D01G305300 chr6A 90.000 130 11 2 2193 2321 559143176 559143048 1.430000e-37 167
20 TraesCS6D01G305300 chr3B 91.667 72 6 0 1652 1723 335119877 335119806 1.470000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G305300 chr6D 414240326 414242646 2320 True 4287.0 4287 100.000000 1 2321 1 chr6D.!!$R1 2320
1 TraesCS6D01G305300 chr6D 414105264 414106791 1527 True 209.0 357 93.072667 1849 2321 3 chr6D.!!$R2 472
2 TraesCS6D01G305300 chr7B 609701349 609704500 3151 False 661.5 857 85.552500 9 1350 2 chr7B.!!$F2 1341
3 TraesCS6D01G305300 chr7B 130120411 130121020 609 False 459.0 459 81.094000 701 1312 1 chr7B.!!$F1 611
4 TraesCS6D01G305300 chr7B 130503647 130504231 584 True 387.0 387 79.398000 700 1312 1 chr7B.!!$R1 612
5 TraesCS6D01G305300 chr7D 166203894 166204397 503 True 457.0 457 83.594000 818 1312 1 chr7D.!!$R1 494
6 TraesCS6D01G305300 chr7D 165944418 165945039 621 False 442.0 442 80.435000 701 1312 1 chr7D.!!$F1 611
7 TraesCS6D01G305300 chr7A 167680410 167680923 513 False 444.0 444 82.913000 818 1312 1 chr7A.!!$F1 494
8 TraesCS6D01G305300 chr5B 612083094 612083933 839 False 220.0 220 92.357000 1653 1808 2 chr5B.!!$F1 155

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
807 2684 0.034059 CTCACCTCACCTCACACACC 59.966 60.0 0.0 0.0 0.0 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1929 3860 0.179089 CCGAGGAGACAAGAGCCATG 60.179 60.0 0.0 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.695556 TCTGATTGTACATGGGTTGCATG 59.304 43.478 0.00 0.00 36.22 4.06
70 77 0.459489 TTGGCAGTGTTCTGTTTGGC 59.541 50.000 0.00 0.00 43.05 4.52
75 82 3.181480 GGCAGTGTTCTGTTTGGCTTTTA 60.181 43.478 0.00 0.00 43.05 1.52
76 83 4.501400 GGCAGTGTTCTGTTTGGCTTTTAT 60.501 41.667 0.00 0.00 43.05 1.40
111 118 2.079925 GGTAGTCTGCTTCCTTTGCTG 58.920 52.381 0.00 0.00 30.49 4.41
112 119 2.551071 GGTAGTCTGCTTCCTTTGCTGT 60.551 50.000 0.00 0.00 30.49 4.40
120 127 3.894427 TGCTTCCTTTGCTGTTTGGATTA 59.106 39.130 0.00 0.00 0.00 1.75
141 148 0.823356 ACTTTGCATGCGGTGGTCTT 60.823 50.000 14.09 0.00 0.00 3.01
144 151 1.106351 TTGCATGCGGTGGTCTTGTT 61.106 50.000 14.09 0.00 0.00 2.83
149 156 0.878523 TGCGGTGGTCTTGTTCTTCG 60.879 55.000 0.00 0.00 0.00 3.79
196 205 3.430098 GGTTTGCATGTGTTGGTCAAAGA 60.430 43.478 0.00 0.00 0.00 2.52
209 218 4.619973 TGGTCAAAGATTGTTTGCATGTC 58.380 39.130 1.54 0.00 0.00 3.06
231 250 3.433882 CGAGAGAGAGGCCCTAGTTAAGA 60.434 52.174 0.00 0.00 0.00 2.10
232 251 4.538738 GAGAGAGAGGCCCTAGTTAAGAA 58.461 47.826 0.00 0.00 0.00 2.52
246 265 1.003851 TAAGAACGCGGTGCTTATGC 58.996 50.000 12.47 0.00 32.96 3.14
263 282 6.151817 TGCTTATGCGTATCATCTACTCATCT 59.848 38.462 0.00 0.00 43.34 2.90
264 283 7.032580 GCTTATGCGTATCATCTACTCATCTT 58.967 38.462 0.00 0.00 36.63 2.40
265 284 7.009083 GCTTATGCGTATCATCTACTCATCTTG 59.991 40.741 0.00 0.00 36.63 3.02
269 288 5.334182 GCGTATCATCTACTCATCTTGTCGA 60.334 44.000 0.00 0.00 0.00 4.20
281 300 4.878971 TCATCTTGTCGACCAAACAAAAGA 59.121 37.500 14.12 13.32 36.27 2.52
282 301 5.355630 TCATCTTGTCGACCAAACAAAAGAA 59.644 36.000 14.12 0.00 36.27 2.52
334 353 3.001330 GCTAACAATCTGCATACGGTCAC 59.999 47.826 0.00 0.00 0.00 3.67
398 424 0.391793 CGGAAGAGAAAGACCCCAGC 60.392 60.000 0.00 0.00 0.00 4.85
438 2302 2.610374 TGCGTACTCACCTTGACAAAAC 59.390 45.455 0.00 0.00 0.00 2.43
442 2306 5.632959 CGTACTCACCTTGACAAAACAAAA 58.367 37.500 0.00 0.00 0.00 2.44
443 2307 6.087522 CGTACTCACCTTGACAAAACAAAAA 58.912 36.000 0.00 0.00 0.00 1.94
491 2355 4.578928 AGTAGTGCATGAAACTTTTCCGTT 59.421 37.500 6.78 0.00 36.36 4.44
494 2358 4.819630 AGTGCATGAAACTTTTCCGTTCTA 59.180 37.500 0.00 0.00 36.36 2.10
496 2360 4.819630 TGCATGAAACTTTTCCGTTCTAGT 59.180 37.500 0.00 0.00 36.36 2.57
497 2361 5.049680 TGCATGAAACTTTTCCGTTCTAGTC 60.050 40.000 0.00 0.00 36.36 2.59
498 2362 5.179555 GCATGAAACTTTTCCGTTCTAGTCT 59.820 40.000 0.00 0.00 36.36 3.24
506 2370 7.770201 ACTTTTCCGTTCTAGTCTAGTAATCC 58.230 38.462 6.77 0.00 0.00 3.01
537 2401 0.321671 TCAGAAAGAAGGCGTCTGGG 59.678 55.000 3.07 0.00 39.42 4.45
576 2440 3.865830 GCGGTAGCTTGCTTCGGC 61.866 66.667 13.67 13.67 41.01 5.54
578 2442 2.046314 GGTAGCTTGCTTCGGCCA 60.046 61.111 2.24 0.00 40.91 5.36
579 2443 1.452108 GGTAGCTTGCTTCGGCCAT 60.452 57.895 2.24 0.00 40.91 4.40
580 2444 1.718757 GGTAGCTTGCTTCGGCCATG 61.719 60.000 2.24 0.00 40.91 3.66
581 2445 1.451927 TAGCTTGCTTCGGCCATGG 60.452 57.895 7.63 7.63 40.91 3.66
596 2460 1.347050 CCATGGAGTCCTGAGCCATAG 59.653 57.143 5.56 0.00 40.29 2.23
604 2468 1.068753 CTGAGCCATAGGTCGCAGG 59.931 63.158 0.00 0.00 43.71 4.85
605 2469 2.374830 CTGAGCCATAGGTCGCAGGG 62.375 65.000 0.00 0.00 43.71 4.45
627 2491 2.892425 CGCTTCGGCCATGGAGTC 60.892 66.667 18.40 2.79 37.76 3.36
628 2492 2.514824 GCTTCGGCCATGGAGTCC 60.515 66.667 18.40 6.34 34.32 3.85
629 2493 3.036429 GCTTCGGCCATGGAGTCCT 62.036 63.158 18.40 0.00 34.32 3.85
632 2496 1.617018 TTCGGCCATGGAGTCCTGAG 61.617 60.000 18.40 0.00 0.00 3.35
647 2511 3.117171 GAGCCAGCGCACAGACAG 61.117 66.667 11.47 0.00 37.52 3.51
663 2527 3.131223 CAGACAGAATAGCTTCTTCGGGA 59.869 47.826 0.00 0.00 39.78 5.14
665 2529 4.407296 AGACAGAATAGCTTCTTCGGGAAT 59.593 41.667 0.00 0.00 39.78 3.01
668 2532 3.711704 AGAATAGCTTCTTCGGGAATGGA 59.288 43.478 0.00 0.00 38.63 3.41
671 2535 0.253327 GCTTCTTCGGGAATGGAGGT 59.747 55.000 0.00 0.00 33.01 3.85
680 2544 1.403687 GGAATGGAGGTCGGCTAGCT 61.404 60.000 15.72 0.00 39.11 3.32
695 2559 3.459145 GCTAGCTAAGCCTTCCACTAAC 58.541 50.000 7.70 0.00 46.25 2.34
696 2560 3.741700 GCTAGCTAAGCCTTCCACTAACC 60.742 52.174 7.70 0.00 46.25 2.85
698 2562 2.237392 AGCTAAGCCTTCCACTAACCAG 59.763 50.000 0.00 0.00 0.00 4.00
759 2635 1.082756 GCACGAACACCGCAAAGAG 60.083 57.895 0.00 0.00 43.32 2.85
761 2637 1.522806 ACGAACACCGCAAAGAGCA 60.523 52.632 0.00 0.00 46.13 4.26
763 2639 0.238289 CGAACACCGCAAAGAGCAAT 59.762 50.000 0.00 0.00 46.13 3.56
785 2662 2.668550 GAGCCAAACGAACGCCCT 60.669 61.111 0.00 0.00 0.00 5.19
807 2684 0.034059 CTCACCTCACCTCACACACC 59.966 60.000 0.00 0.00 0.00 4.16
908 2789 2.350514 GAAGGAGCAGCAGCCTGT 59.649 61.111 7.54 0.00 43.56 4.00
957 2839 1.429148 CGTAATGGCGCCAAGGAGAC 61.429 60.000 36.33 23.53 0.00 3.36
958 2840 0.392461 GTAATGGCGCCAAGGAGACA 60.392 55.000 36.33 7.40 37.35 3.41
961 2843 2.281484 GGCGCCAAGGAGACACAA 60.281 61.111 24.80 0.00 0.00 3.33
1052 2948 2.159819 GAGTCCGAGCAGGTCAAGCA 62.160 60.000 0.00 0.00 41.99 3.91
1181 3077 2.741985 CGGCGCACTCCATGTTGA 60.742 61.111 10.83 0.00 0.00 3.18
1191 3090 1.215382 CCATGTTGACGGCGAGAGA 59.785 57.895 16.62 0.00 0.00 3.10
1244 3147 2.680352 GACCGACCTCTCCTGCCA 60.680 66.667 0.00 0.00 0.00 4.92
1362 3292 4.214327 GGGAAGGCGAGCGAGGAG 62.214 72.222 0.00 0.00 0.00 3.69
1363 3293 4.214327 GGAAGGCGAGCGAGGAGG 62.214 72.222 0.00 0.00 0.00 4.30
1364 3294 4.882396 GAAGGCGAGCGAGGAGGC 62.882 72.222 0.00 0.00 0.00 4.70
1369 3299 4.504916 CGAGCGAGGAGGCCTGTG 62.505 72.222 12.00 0.00 31.76 3.66
1370 3300 4.828925 GAGCGAGGAGGCCTGTGC 62.829 72.222 12.00 8.70 31.76 4.57
1382 3312 3.583054 CCTGTGCAGGTCCATTGAT 57.417 52.632 9.96 0.00 43.61 2.57
1383 3313 1.843368 CCTGTGCAGGTCCATTGATT 58.157 50.000 9.96 0.00 43.61 2.57
1384 3314 1.475280 CCTGTGCAGGTCCATTGATTG 59.525 52.381 9.96 0.00 43.61 2.67
1385 3315 0.889994 TGTGCAGGTCCATTGATTGC 59.110 50.000 0.00 0.00 35.63 3.56
1386 3316 0.889994 GTGCAGGTCCATTGATTGCA 59.110 50.000 5.25 5.25 39.85 4.08
1387 3317 0.889994 TGCAGGTCCATTGATTGCAC 59.110 50.000 5.25 0.00 38.33 4.57
1388 3318 0.179156 GCAGGTCCATTGATTGCACG 60.179 55.000 0.00 0.00 35.34 5.34
1389 3319 0.179156 CAGGTCCATTGATTGCACGC 60.179 55.000 0.00 0.00 0.00 5.34
1390 3320 0.322816 AGGTCCATTGATTGCACGCT 60.323 50.000 0.00 0.00 0.00 5.07
1391 3321 0.099436 GGTCCATTGATTGCACGCTC 59.901 55.000 0.00 0.00 0.00 5.03
1392 3322 0.804364 GTCCATTGATTGCACGCTCA 59.196 50.000 0.00 0.00 0.00 4.26
1393 3323 1.089112 TCCATTGATTGCACGCTCAG 58.911 50.000 0.00 0.00 0.00 3.35
1394 3324 0.524816 CCATTGATTGCACGCTCAGC 60.525 55.000 0.00 0.00 0.00 4.26
1408 3338 2.003301 GCTCAGCGGCCTATTTATAGC 58.997 52.381 0.00 0.00 0.00 2.97
1409 3339 2.622436 CTCAGCGGCCTATTTATAGCC 58.378 52.381 0.00 0.00 0.00 3.93
1410 3340 1.067142 TCAGCGGCCTATTTATAGCCG 60.067 52.381 17.72 17.72 44.86 5.52
1411 3341 1.067142 CAGCGGCCTATTTATAGCCGA 60.067 52.381 25.26 0.00 44.86 5.54
1412 3342 1.621814 AGCGGCCTATTTATAGCCGAA 59.378 47.619 25.26 0.00 44.86 4.30
1413 3343 2.000447 GCGGCCTATTTATAGCCGAAG 59.000 52.381 25.26 0.00 44.86 3.79
1414 3344 2.353406 GCGGCCTATTTATAGCCGAAGA 60.353 50.000 25.26 0.00 44.86 2.87
1415 3345 3.863400 GCGGCCTATTTATAGCCGAAGAA 60.863 47.826 25.26 0.00 44.86 2.52
1416 3346 4.504858 CGGCCTATTTATAGCCGAAGAAT 58.495 43.478 17.17 0.00 44.86 2.40
1417 3347 4.330074 CGGCCTATTTATAGCCGAAGAATG 59.670 45.833 17.17 0.00 44.86 2.67
1418 3348 4.636206 GGCCTATTTATAGCCGAAGAATGG 59.364 45.833 0.00 0.00 0.00 3.16
1426 3356 3.861341 CCGAAGAATGGCTCCAGAA 57.139 52.632 0.00 0.00 0.00 3.02
1427 3357 2.113860 CCGAAGAATGGCTCCAGAAA 57.886 50.000 0.00 0.00 0.00 2.52
1428 3358 2.648059 CCGAAGAATGGCTCCAGAAAT 58.352 47.619 0.00 0.00 0.00 2.17
1429 3359 3.019564 CCGAAGAATGGCTCCAGAAATT 58.980 45.455 0.00 0.00 0.00 1.82
1430 3360 3.445096 CCGAAGAATGGCTCCAGAAATTT 59.555 43.478 0.00 0.00 0.00 1.82
1431 3361 4.439289 CCGAAGAATGGCTCCAGAAATTTC 60.439 45.833 10.33 10.33 0.00 2.17
1432 3362 4.666237 GAAGAATGGCTCCAGAAATTTCG 58.334 43.478 12.42 7.63 0.00 3.46
1433 3363 2.424956 AGAATGGCTCCAGAAATTTCGC 59.575 45.455 12.42 9.51 0.00 4.70
1434 3364 1.838112 ATGGCTCCAGAAATTTCGCA 58.162 45.000 12.42 0.16 0.00 5.10
1435 3365 1.167851 TGGCTCCAGAAATTTCGCAG 58.832 50.000 12.42 10.32 0.00 5.18
1436 3366 0.179153 GGCTCCAGAAATTTCGCAGC 60.179 55.000 21.54 21.54 0.00 5.25
1437 3367 0.523072 GCTCCAGAAATTTCGCAGCA 59.477 50.000 23.33 3.91 32.05 4.41
1438 3368 1.068333 GCTCCAGAAATTTCGCAGCAA 60.068 47.619 23.33 6.45 32.05 3.91
1439 3369 2.860062 CTCCAGAAATTTCGCAGCAAG 58.140 47.619 12.42 2.86 0.00 4.01
1440 3370 1.068333 TCCAGAAATTTCGCAGCAAGC 60.068 47.619 12.42 0.00 40.87 4.01
1441 3371 1.336148 CCAGAAATTTCGCAGCAAGCA 60.336 47.619 12.42 0.00 46.13 3.91
1442 3372 1.983605 CAGAAATTTCGCAGCAAGCAG 59.016 47.619 12.42 0.00 46.13 4.24
1443 3373 0.712222 GAAATTTCGCAGCAAGCAGC 59.288 50.000 1.68 0.00 46.13 5.25
1452 3382 3.244105 GCAAGCAGCGTCGAGAAA 58.756 55.556 0.00 0.00 0.00 2.52
1453 3383 1.154580 GCAAGCAGCGTCGAGAAAC 60.155 57.895 0.00 0.00 0.00 2.78
1454 3384 1.831389 GCAAGCAGCGTCGAGAAACA 61.831 55.000 0.00 0.00 0.00 2.83
1455 3385 0.792640 CAAGCAGCGTCGAGAAACAT 59.207 50.000 0.00 0.00 0.00 2.71
1456 3386 1.071605 AAGCAGCGTCGAGAAACATC 58.928 50.000 0.00 0.00 0.00 3.06
1457 3387 1.073216 AGCAGCGTCGAGAAACATCG 61.073 55.000 0.00 0.00 44.07 3.84
1463 3393 3.990546 TCGAGAAACATCGAGGACG 57.009 52.632 3.06 1.83 46.20 4.79
1475 3405 3.837213 TCGAGGACGAACGATTTTAGT 57.163 42.857 0.14 0.00 45.74 2.24
1476 3406 3.495193 TCGAGGACGAACGATTTTAGTG 58.505 45.455 0.14 0.00 45.74 2.74
1477 3407 2.597305 CGAGGACGAACGATTTTAGTGG 59.403 50.000 0.14 0.00 42.66 4.00
1478 3408 2.344025 AGGACGAACGATTTTAGTGGC 58.656 47.619 0.14 0.00 0.00 5.01
1479 3409 1.060122 GGACGAACGATTTTAGTGGCG 59.940 52.381 0.14 0.00 0.00 5.69
1480 3410 1.987770 GACGAACGATTTTAGTGGCGA 59.012 47.619 0.14 0.00 0.00 5.54
1481 3411 2.601763 GACGAACGATTTTAGTGGCGAT 59.398 45.455 0.14 0.00 0.00 4.58
1482 3412 2.347452 ACGAACGATTTTAGTGGCGATG 59.653 45.455 0.14 0.00 0.00 3.84
1483 3413 2.285602 CGAACGATTTTAGTGGCGATGG 60.286 50.000 0.00 0.00 0.00 3.51
1484 3414 2.684001 ACGATTTTAGTGGCGATGGA 57.316 45.000 0.00 0.00 0.00 3.41
1485 3415 2.277084 ACGATTTTAGTGGCGATGGAC 58.723 47.619 0.00 0.00 0.00 4.02
1486 3416 2.093658 ACGATTTTAGTGGCGATGGACT 60.094 45.455 0.00 0.00 0.00 3.85
1487 3417 2.936498 CGATTTTAGTGGCGATGGACTT 59.064 45.455 0.00 0.00 0.00 3.01
1488 3418 3.001330 CGATTTTAGTGGCGATGGACTTC 59.999 47.826 0.00 0.00 0.00 3.01
1489 3419 2.396590 TTTAGTGGCGATGGACTTCC 57.603 50.000 0.00 0.00 0.00 3.46
1500 3430 2.309528 TGGACTTCCATATCACACGC 57.690 50.000 0.00 0.00 42.01 5.34
1501 3431 1.552792 TGGACTTCCATATCACACGCA 59.447 47.619 0.00 0.00 42.01 5.24
1502 3432 2.027653 TGGACTTCCATATCACACGCAA 60.028 45.455 0.00 0.00 42.01 4.85
1503 3433 3.006940 GGACTTCCATATCACACGCAAA 58.993 45.455 0.00 0.00 35.64 3.68
1504 3434 3.627577 GGACTTCCATATCACACGCAAAT 59.372 43.478 0.00 0.00 35.64 2.32
1505 3435 4.260784 GGACTTCCATATCACACGCAAATC 60.261 45.833 0.00 0.00 35.64 2.17
1506 3436 4.517285 ACTTCCATATCACACGCAAATCT 58.483 39.130 0.00 0.00 0.00 2.40
1507 3437 4.333649 ACTTCCATATCACACGCAAATCTG 59.666 41.667 0.00 0.00 0.00 2.90
1508 3438 2.613595 TCCATATCACACGCAAATCTGC 59.386 45.455 0.00 0.00 45.75 4.26
1512 3442 0.109643 TCACACGCAAATCTGCATGC 60.110 50.000 11.82 11.82 45.63 4.06
1513 3443 0.387494 CACACGCAAATCTGCATGCA 60.387 50.000 21.29 21.29 45.63 3.96
1514 3444 0.314618 ACACGCAAATCTGCATGCAA 59.685 45.000 22.88 13.05 45.63 4.08
1515 3445 1.269673 ACACGCAAATCTGCATGCAAA 60.270 42.857 22.88 9.58 45.63 3.68
1516 3446 3.428442 ACACGCAAATCTGCATGCAAAC 61.428 45.455 22.88 6.53 45.63 2.93
1517 3447 5.888013 ACACGCAAATCTGCATGCAAACA 62.888 43.478 22.88 9.00 45.63 2.83
1520 3450 2.396601 CAAATCTGCATGCAAACACGT 58.603 42.857 22.88 2.09 0.00 4.49
1521 3451 2.054687 AATCTGCATGCAAACACGTG 57.945 45.000 22.88 15.48 0.00 4.49
1522 3452 0.241749 ATCTGCATGCAAACACGTGG 59.758 50.000 22.88 7.42 0.00 4.94
1523 3453 1.100463 TCTGCATGCAAACACGTGGT 61.100 50.000 22.88 11.47 0.00 4.16
1524 3454 0.661187 CTGCATGCAAACACGTGGTC 60.661 55.000 22.88 2.42 0.00 4.02
1525 3455 1.371635 GCATGCAAACACGTGGTCC 60.372 57.895 21.57 8.90 0.00 4.46
1526 3456 1.285641 CATGCAAACACGTGGTCCC 59.714 57.895 21.57 8.51 0.00 4.46
1527 3457 1.152860 ATGCAAACACGTGGTCCCA 60.153 52.632 21.57 14.27 0.00 4.37
1528 3458 0.539438 ATGCAAACACGTGGTCCCAT 60.539 50.000 21.57 15.94 0.00 4.00
1529 3459 1.169661 TGCAAACACGTGGTCCCATC 61.170 55.000 21.57 2.17 0.00 3.51
1530 3460 1.169661 GCAAACACGTGGTCCCATCA 61.170 55.000 21.57 0.00 0.00 3.07
1531 3461 0.591170 CAAACACGTGGTCCCATCAC 59.409 55.000 21.57 0.00 0.00 3.06
1536 3466 4.278956 GTGGTCCCATCACGTGTC 57.721 61.111 16.51 0.85 0.00 3.67
1537 3467 1.375523 GTGGTCCCATCACGTGTCC 60.376 63.158 16.51 9.91 0.00 4.02
1538 3468 2.125673 GGTCCCATCACGTGTCCG 60.126 66.667 16.51 5.07 40.83 4.79
1539 3469 2.125673 GTCCCATCACGTGTCCGG 60.126 66.667 16.51 13.79 38.78 5.14
1540 3470 2.602267 TCCCATCACGTGTCCGGT 60.602 61.111 16.51 0.00 38.78 5.28
1541 3471 2.125673 CCCATCACGTGTCCGGTC 60.126 66.667 16.51 0.00 38.78 4.79
1542 3472 2.125673 CCATCACGTGTCCGGTCC 60.126 66.667 16.51 0.00 38.78 4.46
1543 3473 2.654289 CATCACGTGTCCGGTCCA 59.346 61.111 16.51 0.00 38.78 4.02
1544 3474 1.736645 CATCACGTGTCCGGTCCAC 60.737 63.158 16.51 14.50 38.78 4.02
1545 3475 2.204461 ATCACGTGTCCGGTCCACA 61.204 57.895 16.51 8.79 38.78 4.17
1546 3476 1.541310 ATCACGTGTCCGGTCCACAT 61.541 55.000 16.51 8.40 38.78 3.21
1547 3477 2.027073 CACGTGTCCGGTCCACATG 61.027 63.158 21.24 16.75 38.78 3.21
1548 3478 3.118454 CGTGTCCGGTCCACATGC 61.118 66.667 21.24 1.32 33.00 4.06
1549 3479 2.031919 GTGTCCGGTCCACATGCA 59.968 61.111 18.12 0.00 33.00 3.96
1550 3480 2.034879 GTGTCCGGTCCACATGCAG 61.035 63.158 18.12 0.00 33.00 4.41
1551 3481 3.127533 GTCCGGTCCACATGCAGC 61.128 66.667 0.00 0.00 0.00 5.25
1552 3482 3.635191 TCCGGTCCACATGCAGCA 61.635 61.111 0.00 0.00 0.00 4.41
1553 3483 3.129502 CCGGTCCACATGCAGCAG 61.130 66.667 0.00 0.00 0.00 4.24
1554 3484 3.807538 CGGTCCACATGCAGCAGC 61.808 66.667 0.00 0.00 42.57 5.25
1555 3485 3.446570 GGTCCACATGCAGCAGCC 61.447 66.667 0.00 0.00 41.13 4.85
1556 3486 2.674033 GTCCACATGCAGCAGCCA 60.674 61.111 0.00 0.00 41.13 4.75
1557 3487 2.115695 TCCACATGCAGCAGCCAA 59.884 55.556 0.00 0.00 41.13 4.52
1558 3488 2.260434 CCACATGCAGCAGCCAAC 59.740 61.111 0.00 0.00 41.13 3.77
1559 3489 2.566570 CCACATGCAGCAGCCAACA 61.567 57.895 0.00 0.00 41.13 3.33
1560 3490 1.364536 CACATGCAGCAGCCAACAA 59.635 52.632 0.00 0.00 41.13 2.83
1561 3491 0.249531 CACATGCAGCAGCCAACAAA 60.250 50.000 0.00 0.00 41.13 2.83
1562 3492 0.682852 ACATGCAGCAGCCAACAAAT 59.317 45.000 0.00 0.00 41.13 2.32
1563 3493 1.337447 ACATGCAGCAGCCAACAAATC 60.337 47.619 0.00 0.00 41.13 2.17
1564 3494 0.970640 ATGCAGCAGCCAACAAATCA 59.029 45.000 0.00 0.00 41.13 2.57
1565 3495 0.315886 TGCAGCAGCCAACAAATCAG 59.684 50.000 0.00 0.00 41.13 2.90
1566 3496 0.389426 GCAGCAGCCAACAAATCAGG 60.389 55.000 0.00 0.00 33.58 3.86
1567 3497 1.250328 CAGCAGCCAACAAATCAGGA 58.750 50.000 0.00 0.00 0.00 3.86
1568 3498 1.822990 CAGCAGCCAACAAATCAGGAT 59.177 47.619 0.00 0.00 0.00 3.24
1569 3499 2.097825 AGCAGCCAACAAATCAGGATC 58.902 47.619 0.00 0.00 0.00 3.36
1570 3500 2.097825 GCAGCCAACAAATCAGGATCT 58.902 47.619 0.00 0.00 0.00 2.75
1571 3501 2.098770 GCAGCCAACAAATCAGGATCTC 59.901 50.000 0.00 0.00 0.00 2.75
1572 3502 3.349927 CAGCCAACAAATCAGGATCTCA 58.650 45.455 0.00 0.00 0.00 3.27
1573 3503 3.760151 CAGCCAACAAATCAGGATCTCAA 59.240 43.478 0.00 0.00 0.00 3.02
1574 3504 3.760684 AGCCAACAAATCAGGATCTCAAC 59.239 43.478 0.00 0.00 0.00 3.18
1575 3505 3.760684 GCCAACAAATCAGGATCTCAACT 59.239 43.478 0.00 0.00 0.00 3.16
1576 3506 4.943705 GCCAACAAATCAGGATCTCAACTA 59.056 41.667 0.00 0.00 0.00 2.24
1577 3507 5.415701 GCCAACAAATCAGGATCTCAACTAA 59.584 40.000 0.00 0.00 0.00 2.24
1578 3508 6.071952 GCCAACAAATCAGGATCTCAACTAAA 60.072 38.462 0.00 0.00 0.00 1.85
1579 3509 7.533426 CCAACAAATCAGGATCTCAACTAAAG 58.467 38.462 0.00 0.00 0.00 1.85
1580 3510 7.391554 CCAACAAATCAGGATCTCAACTAAAGA 59.608 37.037 0.00 0.00 0.00 2.52
1581 3511 8.786898 CAACAAATCAGGATCTCAACTAAAGAA 58.213 33.333 0.00 0.00 0.00 2.52
1582 3512 8.558973 ACAAATCAGGATCTCAACTAAAGAAG 57.441 34.615 0.00 0.00 0.00 2.85
1583 3513 7.609532 ACAAATCAGGATCTCAACTAAAGAAGG 59.390 37.037 0.00 0.00 0.00 3.46
1584 3514 5.091261 TCAGGATCTCAACTAAAGAAGGC 57.909 43.478 0.00 0.00 0.00 4.35
1585 3515 4.532126 TCAGGATCTCAACTAAAGAAGGCA 59.468 41.667 0.00 0.00 0.00 4.75
1586 3516 4.874966 CAGGATCTCAACTAAAGAAGGCAG 59.125 45.833 0.00 0.00 0.00 4.85
1587 3517 4.534103 AGGATCTCAACTAAAGAAGGCAGT 59.466 41.667 0.00 0.00 0.00 4.40
1588 3518 4.633565 GGATCTCAACTAAAGAAGGCAGTG 59.366 45.833 0.00 0.00 0.00 3.66
1589 3519 3.403038 TCTCAACTAAAGAAGGCAGTGC 58.597 45.455 6.55 6.55 0.00 4.40
1590 3520 3.141398 CTCAACTAAAGAAGGCAGTGCA 58.859 45.455 18.61 0.00 0.00 4.57
1591 3521 3.754965 TCAACTAAAGAAGGCAGTGCAT 58.245 40.909 18.61 7.05 0.00 3.96
1592 3522 3.503363 TCAACTAAAGAAGGCAGTGCATG 59.497 43.478 18.61 0.00 0.00 4.06
1602 3532 2.889578 CAGTGCATGCAACCACAAC 58.110 52.632 24.58 8.13 34.48 3.32
1603 3533 0.386476 CAGTGCATGCAACCACAACT 59.614 50.000 24.58 10.63 34.48 3.16
1604 3534 0.670162 AGTGCATGCAACCACAACTC 59.330 50.000 24.58 6.49 34.48 3.01
1605 3535 0.670162 GTGCATGCAACCACAACTCT 59.330 50.000 24.58 0.00 32.37 3.24
1606 3536 1.879380 GTGCATGCAACCACAACTCTA 59.121 47.619 24.58 0.00 32.37 2.43
1607 3537 1.879380 TGCATGCAACCACAACTCTAC 59.121 47.619 20.30 0.00 0.00 2.59
1608 3538 1.879380 GCATGCAACCACAACTCTACA 59.121 47.619 14.21 0.00 0.00 2.74
1609 3539 2.350772 GCATGCAACCACAACTCTACAC 60.351 50.000 14.21 0.00 0.00 2.90
1610 3540 2.700722 TGCAACCACAACTCTACACA 57.299 45.000 0.00 0.00 0.00 3.72
1611 3541 3.207265 TGCAACCACAACTCTACACAT 57.793 42.857 0.00 0.00 0.00 3.21
1612 3542 2.877786 TGCAACCACAACTCTACACATG 59.122 45.455 0.00 0.00 0.00 3.21
1613 3543 2.350772 GCAACCACAACTCTACACATGC 60.351 50.000 0.00 0.00 0.00 4.06
1614 3544 2.877786 CAACCACAACTCTACACATGCA 59.122 45.455 0.00 0.00 0.00 3.96
1615 3545 2.494059 ACCACAACTCTACACATGCAC 58.506 47.619 0.00 0.00 0.00 4.57
1616 3546 1.460743 CCACAACTCTACACATGCACG 59.539 52.381 0.00 0.00 0.00 5.34
1617 3547 2.135139 CACAACTCTACACATGCACGT 58.865 47.619 0.00 0.00 0.00 4.49
1618 3548 3.313690 CACAACTCTACACATGCACGTA 58.686 45.455 0.00 0.00 0.00 3.57
1619 3549 3.738791 CACAACTCTACACATGCACGTAA 59.261 43.478 0.00 0.00 0.00 3.18
1620 3550 3.739300 ACAACTCTACACATGCACGTAAC 59.261 43.478 0.00 0.00 0.00 2.50
1621 3551 2.592194 ACTCTACACATGCACGTAACG 58.408 47.619 0.00 0.00 0.00 3.18
1622 3552 2.227149 ACTCTACACATGCACGTAACGA 59.773 45.455 0.00 0.00 0.00 3.85
1623 3553 3.239254 CTCTACACATGCACGTAACGAA 58.761 45.455 0.00 0.00 0.00 3.85
1624 3554 2.981805 TCTACACATGCACGTAACGAAC 59.018 45.455 0.00 0.00 0.00 3.95
1625 3555 1.860676 ACACATGCACGTAACGAACT 58.139 45.000 0.00 0.00 0.00 3.01
1626 3556 1.790623 ACACATGCACGTAACGAACTC 59.209 47.619 0.00 0.00 0.00 3.01
1627 3557 1.057636 ACATGCACGTAACGAACTCG 58.942 50.000 0.00 0.00 46.33 4.18
1637 3567 3.367743 CGAACTCGTCCACCCCGA 61.368 66.667 0.00 0.00 34.11 5.14
1638 3568 2.260743 GAACTCGTCCACCCCGAC 59.739 66.667 0.00 0.00 0.00 4.79
1639 3569 2.522436 AACTCGTCCACCCCGACA 60.522 61.111 0.00 0.00 32.74 4.35
1640 3570 2.488087 GAACTCGTCCACCCCGACAG 62.488 65.000 0.00 0.00 32.74 3.51
1641 3571 3.760035 CTCGTCCACCCCGACAGG 61.760 72.222 0.00 0.00 32.74 4.00
1642 3572 4.289101 TCGTCCACCCCGACAGGA 62.289 66.667 0.00 0.00 41.02 3.86
1643 3573 3.075005 CGTCCACCCCGACAGGAT 61.075 66.667 0.00 0.00 41.02 3.24
1644 3574 2.901042 GTCCACCCCGACAGGATC 59.099 66.667 0.00 0.00 41.02 3.36
1652 3582 2.264480 CGACAGGATCGTGGGCAA 59.736 61.111 18.95 0.00 46.25 4.52
1653 3583 1.375396 CGACAGGATCGTGGGCAAA 60.375 57.895 18.95 0.00 46.25 3.68
1654 3584 0.953471 CGACAGGATCGTGGGCAAAA 60.953 55.000 18.95 0.00 46.25 2.44
1655 3585 1.463674 GACAGGATCGTGGGCAAAAT 58.536 50.000 18.95 0.00 0.00 1.82
1656 3586 1.401905 GACAGGATCGTGGGCAAAATC 59.598 52.381 18.95 2.71 0.00 2.17
1657 3587 0.378257 CAGGATCGTGGGCAAAATCG 59.622 55.000 7.54 0.00 0.00 3.34
1658 3588 1.064134 GGATCGTGGGCAAAATCGC 59.936 57.895 0.00 0.00 0.00 4.58
1659 3589 1.376609 GGATCGTGGGCAAAATCGCT 61.377 55.000 0.00 0.00 0.00 4.93
1660 3590 1.295792 GATCGTGGGCAAAATCGCTA 58.704 50.000 0.00 0.00 0.00 4.26
1661 3591 1.873591 GATCGTGGGCAAAATCGCTAT 59.126 47.619 0.00 0.00 0.00 2.97
1664 3594 0.455410 GTGGGCAAAATCGCTATGCA 59.545 50.000 0.00 0.00 41.80 3.96
1678 3608 2.287909 GCTATGCACACCCAACGAAAAA 60.288 45.455 0.00 0.00 0.00 1.94
1767 3698 0.237235 ACAAAATACACGTGCCTGCG 59.763 50.000 17.22 2.55 37.94 5.18
1794 3725 5.335583 CCACACACTTTGAAGTCACTTTCAA 60.336 40.000 0.00 0.00 43.32 2.69
1808 3739 5.761818 CACTTTCAAACAAGTGGTGAAAC 57.238 39.130 5.78 0.00 46.84 2.78
1832 3763 5.731591 CTGGAAGGGTAAACTTCGTTAGAT 58.268 41.667 0.00 0.00 46.06 1.98
1837 3768 8.637099 GGAAGGGTAAACTTCGTTAGATATAGT 58.363 37.037 0.00 0.00 46.06 2.12
1845 3776 5.363005 ACTTCGTTAGATATAGTGGCTTGGT 59.637 40.000 0.00 0.00 0.00 3.67
1914 3845 4.881440 GCATGGGCCGCAGATCCA 62.881 66.667 0.00 0.00 34.43 3.41
1915 3846 2.903855 CATGGGCCGCAGATCCAC 60.904 66.667 0.00 0.00 32.98 4.02
1916 3847 4.195334 ATGGGCCGCAGATCCACC 62.195 66.667 0.00 0.00 32.98 4.61
1918 3849 4.195334 GGGCCGCAGATCCACCAT 62.195 66.667 0.00 0.00 0.00 3.55
1919 3850 2.592861 GGCCGCAGATCCACCATC 60.593 66.667 0.00 0.00 0.00 3.51
1920 3851 2.190313 GCCGCAGATCCACCATCA 59.810 61.111 0.00 0.00 33.29 3.07
1921 3852 1.451927 GCCGCAGATCCACCATCAA 60.452 57.895 0.00 0.00 33.29 2.57
1922 3853 1.031571 GCCGCAGATCCACCATCAAA 61.032 55.000 0.00 0.00 33.29 2.69
1923 3854 1.462616 CCGCAGATCCACCATCAAAA 58.537 50.000 0.00 0.00 33.29 2.44
1924 3855 1.133025 CCGCAGATCCACCATCAAAAC 59.867 52.381 0.00 0.00 33.29 2.43
1925 3856 1.202065 CGCAGATCCACCATCAAAACG 60.202 52.381 0.00 0.00 33.29 3.60
1926 3857 1.133025 GCAGATCCACCATCAAAACGG 59.867 52.381 0.00 0.00 33.29 4.44
1927 3858 1.133025 CAGATCCACCATCAAAACGGC 59.867 52.381 0.00 0.00 33.29 5.68
1928 3859 0.098728 GATCCACCATCAAAACGGCG 59.901 55.000 4.80 4.80 0.00 6.46
1929 3860 1.933115 ATCCACCATCAAAACGGCGC 61.933 55.000 6.90 0.00 0.00 6.53
1930 3861 2.642129 CACCATCAAAACGGCGCA 59.358 55.556 10.83 0.00 0.00 6.09
1931 3862 1.212490 CACCATCAAAACGGCGCAT 59.788 52.632 10.83 0.00 0.00 4.73
1932 3863 1.072116 CACCATCAAAACGGCGCATG 61.072 55.000 10.83 2.89 0.00 4.06
1933 3864 1.516821 CCATCAAAACGGCGCATGG 60.517 57.895 10.83 8.12 0.00 3.66
1934 3865 2.160221 CATCAAAACGGCGCATGGC 61.160 57.895 10.83 0.00 42.51 4.40
1935 3866 2.342650 ATCAAAACGGCGCATGGCT 61.343 52.632 10.83 0.00 42.94 4.75
1936 3867 2.270297 ATCAAAACGGCGCATGGCTC 62.270 55.000 10.83 0.00 42.94 4.70
1937 3868 2.672996 AAAACGGCGCATGGCTCT 60.673 55.556 10.83 0.00 42.94 4.09
1938 3869 2.268076 AAAACGGCGCATGGCTCTT 61.268 52.632 10.83 0.00 42.94 2.85
1939 3870 2.476534 AAAACGGCGCATGGCTCTTG 62.477 55.000 10.83 0.00 42.94 3.02
1940 3871 4.704833 ACGGCGCATGGCTCTTGT 62.705 61.111 10.83 0.00 42.94 3.16
1941 3872 3.869272 CGGCGCATGGCTCTTGTC 61.869 66.667 10.83 0.00 42.94 3.18
1942 3873 2.437359 GGCGCATGGCTCTTGTCT 60.437 61.111 10.83 0.00 42.94 3.41
1943 3874 2.467826 GGCGCATGGCTCTTGTCTC 61.468 63.158 10.83 0.00 42.94 3.36
1944 3875 2.467826 GCGCATGGCTCTTGTCTCC 61.468 63.158 0.30 0.00 39.11 3.71
1945 3876 1.220206 CGCATGGCTCTTGTCTCCT 59.780 57.895 0.00 0.00 0.00 3.69
1946 3877 0.809241 CGCATGGCTCTTGTCTCCTC 60.809 60.000 0.00 0.00 0.00 3.71
1947 3878 0.809241 GCATGGCTCTTGTCTCCTCG 60.809 60.000 0.00 0.00 0.00 4.63
1951 3882 2.492090 CTCTTGTCTCCTCGGCCG 59.508 66.667 22.12 22.12 0.00 6.13
1963 3894 1.595993 CTCGGCCGTCTCTCTTCCAA 61.596 60.000 27.15 0.00 0.00 3.53
2015 3946 5.239306 TGGTATGGAAGCGATGATTGATTTC 59.761 40.000 0.00 0.00 0.00 2.17
2062 3993 1.607467 GCTGGTTGGTGCAGGGATT 60.607 57.895 0.00 0.00 0.00 3.01
2122 4053 8.625651 TCGTTTGGTTCAGATTTTATTTTGAGA 58.374 29.630 0.00 0.00 0.00 3.27
2151 4082 4.362279 TTCTTTTGAAGTTGCAGATGTGC 58.638 39.130 8.12 8.12 40.87 4.57
2166 4097 3.446161 AGATGTGCATGGGAAATGTTGAG 59.554 43.478 0.00 0.00 0.00 3.02
2178 4109 1.755179 ATGTTGAGGAGATTTGCGGG 58.245 50.000 0.00 0.00 0.00 6.13
2179 4110 0.690192 TGTTGAGGAGATTTGCGGGA 59.310 50.000 0.00 0.00 0.00 5.14
2198 4129 1.812571 GACCAAAGCGGGCATATATGG 59.187 52.381 14.51 0.00 45.64 2.74
2200 4131 2.373836 ACCAAAGCGGGCATATATGGTA 59.626 45.455 14.51 0.00 37.89 3.25
2204 5463 5.242434 CAAAGCGGGCATATATGGTACTAA 58.758 41.667 14.51 0.00 0.00 2.24
2214 5473 7.987458 GGCATATATGGTACTAATGCATGTAGT 59.013 37.037 14.51 18.92 43.67 2.73
2216 5475 9.534565 CATATATGGTACTAATGCATGTAGTCC 57.465 37.037 18.65 18.21 33.80 3.85
2253 5512 2.988493 CCAACCAATCATTTGTTGCGAG 59.012 45.455 8.53 0.00 0.00 5.03
2265 5524 7.075121 TCATTTGTTGCGAGTGTGTTTATAAG 58.925 34.615 0.00 0.00 0.00 1.73
2267 5526 6.606234 TTGTTGCGAGTGTGTTTATAAGAA 57.394 33.333 0.00 0.00 0.00 2.52
2268 5527 6.223138 TGTTGCGAGTGTGTTTATAAGAAG 57.777 37.500 0.00 0.00 0.00 2.85
2269 5528 4.921470 TGCGAGTGTGTTTATAAGAAGC 57.079 40.909 0.00 0.00 0.00 3.86
2270 5529 4.311606 TGCGAGTGTGTTTATAAGAAGCA 58.688 39.130 0.00 0.00 0.00 3.91
2271 5530 4.935205 TGCGAGTGTGTTTATAAGAAGCAT 59.065 37.500 0.00 0.00 0.00 3.79
2291 5550 5.472478 AGCATTCATATGTCTATTGGTGCAG 59.528 40.000 1.90 0.00 34.12 4.41
2299 5558 2.819608 GTCTATTGGTGCAGAAAGCCAA 59.180 45.455 8.05 8.05 45.02 4.52
2303 5562 2.529780 TGGTGCAGAAAGCCAAATTG 57.470 45.000 0.00 0.00 44.83 2.32
2307 5566 2.979813 GTGCAGAAAGCCAAATTGTACG 59.020 45.455 0.00 0.00 44.83 3.67
2314 5573 0.445043 GCCAAATTGTACGGTCGTCC 59.555 55.000 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.129287 GCAACCCATGTACAATCAGAAGG 59.871 47.826 0.00 0.00 0.00 3.46
1 2 3.758023 TGCAACCCATGTACAATCAGAAG 59.242 43.478 0.00 0.00 0.00 2.85
2 3 3.760738 TGCAACCCATGTACAATCAGAA 58.239 40.909 0.00 0.00 0.00 3.02
3 4 3.431673 TGCAACCCATGTACAATCAGA 57.568 42.857 0.00 0.00 0.00 3.27
4 5 4.036567 CATGCAACCCATGTACAATCAG 57.963 45.455 0.00 0.00 45.05 2.90
25 26 1.251251 AGGCAAATCAGACAGCAACC 58.749 50.000 0.00 0.00 0.00 3.77
32 36 2.673368 CAAGGACGTAGGCAAATCAGAC 59.327 50.000 0.00 0.00 0.00 3.51
94 101 2.355010 AACAGCAAAGGAAGCAGACT 57.645 45.000 0.00 0.00 0.00 3.24
111 118 3.364621 CGCATGCAAAGTGTAATCCAAAC 59.635 43.478 19.57 0.00 0.00 2.93
112 119 3.573598 CGCATGCAAAGTGTAATCCAAA 58.426 40.909 19.57 0.00 0.00 3.28
120 127 1.795170 GACCACCGCATGCAAAGTGT 61.795 55.000 23.27 15.05 0.00 3.55
141 148 0.748729 AAACCAACGGGCGAAGAACA 60.749 50.000 0.00 0.00 37.90 3.18
144 151 2.548295 GCAAACCAACGGGCGAAGA 61.548 57.895 0.00 0.00 37.90 2.87
149 156 2.226602 TTTAAAGCAAACCAACGGGC 57.773 45.000 0.00 0.00 37.90 6.13
173 180 1.478631 TGACCAACACATGCAAACCA 58.521 45.000 0.00 0.00 0.00 3.67
196 205 3.930336 TCTCTCTCGACATGCAAACAAT 58.070 40.909 0.00 0.00 0.00 2.71
209 218 2.642154 TAACTAGGGCCTCTCTCTCG 57.358 55.000 10.74 0.00 0.00 4.04
246 265 6.074642 GTCGACAAGATGAGTAGATGATACG 58.925 44.000 11.55 0.00 0.00 3.06
282 301 7.928307 ATCACTAGCAGTGTATGATGTTTTT 57.072 32.000 13.59 0.00 46.03 1.94
289 308 5.578776 CGTTGTATCACTAGCAGTGTATGA 58.421 41.667 13.59 0.00 46.03 2.15
292 311 3.442625 AGCGTTGTATCACTAGCAGTGTA 59.557 43.478 13.59 5.76 46.03 2.90
293 312 2.231478 AGCGTTGTATCACTAGCAGTGT 59.769 45.455 13.59 6.47 46.03 3.55
374 393 1.555533 GGGTCTTTCTCTTCCGGTGAT 59.444 52.381 0.00 0.00 0.00 3.06
385 411 1.557371 GCTCTTAGCTGGGGTCTTTCT 59.443 52.381 0.00 0.00 38.45 2.52
386 412 1.279271 TGCTCTTAGCTGGGGTCTTTC 59.721 52.381 0.00 0.00 42.97 2.62
391 417 0.995024 AATGTGCTCTTAGCTGGGGT 59.005 50.000 0.00 0.00 42.97 4.95
442 2306 6.875195 CACACAAATCCCATCAGCTAAATTTT 59.125 34.615 0.00 0.00 0.00 1.82
443 2307 6.211184 TCACACAAATCCCATCAGCTAAATTT 59.789 34.615 0.00 0.00 0.00 1.82
444 2308 5.716228 TCACACAAATCCCATCAGCTAAATT 59.284 36.000 0.00 0.00 0.00 1.82
445 2309 5.263599 TCACACAAATCCCATCAGCTAAAT 58.736 37.500 0.00 0.00 0.00 1.40
446 2310 4.661222 TCACACAAATCCCATCAGCTAAA 58.339 39.130 0.00 0.00 0.00 1.85
447 2311 4.263462 ACTCACACAAATCCCATCAGCTAA 60.263 41.667 0.00 0.00 0.00 3.09
453 2317 3.375299 GCACTACTCACACAAATCCCATC 59.625 47.826 0.00 0.00 0.00 3.51
458 2322 5.611796 TTCATGCACTACTCACACAAATC 57.388 39.130 0.00 0.00 0.00 2.17
494 2358 9.815306 TGATCTATTTAGCAGGATTACTAGACT 57.185 33.333 0.00 0.00 0.00 3.24
506 2370 6.073873 CGCCTTCTTTCTGATCTATTTAGCAG 60.074 42.308 0.00 0.00 0.00 4.24
521 2385 1.892209 TTTCCCAGACGCCTTCTTTC 58.108 50.000 0.00 0.00 28.96 2.62
537 2401 4.091365 GCCCGCAAAGTGTTATTGATTTTC 59.909 41.667 0.00 0.00 0.00 2.29
576 2440 1.347050 CTATGGCTCAGGACTCCATGG 59.653 57.143 4.97 4.97 40.52 3.66
578 2442 1.061812 ACCTATGGCTCAGGACTCCAT 60.062 52.381 11.27 0.00 42.70 3.41
579 2443 0.339859 ACCTATGGCTCAGGACTCCA 59.660 55.000 11.27 0.00 36.61 3.86
580 2444 1.044611 GACCTATGGCTCAGGACTCC 58.955 60.000 11.27 0.00 36.61 3.85
581 2445 0.671251 CGACCTATGGCTCAGGACTC 59.329 60.000 11.27 0.14 36.61 3.36
611 2475 2.514824 GGACTCCATGGCCGAAGC 60.515 66.667 6.96 0.00 31.76 3.86
617 2481 2.191641 GGCTCAGGACTCCATGGC 59.808 66.667 6.96 0.00 0.00 4.40
618 2482 1.525923 CTGGCTCAGGACTCCATGG 59.474 63.158 4.97 4.97 0.00 3.66
619 2483 1.153208 GCTGGCTCAGGACTCCATG 60.153 63.158 0.00 0.00 31.21 3.66
620 2484 2.729479 CGCTGGCTCAGGACTCCAT 61.729 63.158 0.00 0.00 31.21 3.41
621 2485 3.385384 CGCTGGCTCAGGACTCCA 61.385 66.667 0.00 0.00 31.21 3.86
622 2486 4.828925 GCGCTGGCTCAGGACTCC 62.829 72.222 0.00 0.00 35.83 3.85
623 2487 4.074526 TGCGCTGGCTCAGGACTC 62.075 66.667 9.73 0.00 40.82 3.36
624 2488 4.385405 GTGCGCTGGCTCAGGACT 62.385 66.667 9.73 0.00 40.82 3.85
625 2489 4.687215 TGTGCGCTGGCTCAGGAC 62.687 66.667 9.73 0.00 37.71 3.85
629 2493 3.871248 CTGTCTGTGCGCTGGCTCA 62.871 63.158 9.73 1.91 40.10 4.26
632 2496 0.740868 TATTCTGTCTGTGCGCTGGC 60.741 55.000 9.73 1.30 40.52 4.85
647 2511 4.061596 CTCCATTCCCGAAGAAGCTATTC 58.938 47.826 0.00 0.00 38.07 1.75
663 2527 1.689273 CTTAGCTAGCCGACCTCCATT 59.311 52.381 12.13 0.00 0.00 3.16
665 2529 1.392710 GCTTAGCTAGCCGACCTCCA 61.393 60.000 12.13 0.00 44.48 3.86
680 2544 2.570302 GGTCTGGTTAGTGGAAGGCTTA 59.430 50.000 0.00 0.00 0.00 3.09
686 2550 4.466827 GAAAAAGGGTCTGGTTAGTGGAA 58.533 43.478 0.00 0.00 0.00 3.53
687 2551 3.495453 CGAAAAAGGGTCTGGTTAGTGGA 60.495 47.826 0.00 0.00 0.00 4.02
690 2554 2.105993 AGCGAAAAAGGGTCTGGTTAGT 59.894 45.455 0.00 0.00 0.00 2.24
695 2559 1.912371 GCGAGCGAAAAAGGGTCTGG 61.912 60.000 0.00 0.00 0.00 3.86
696 2560 1.497722 GCGAGCGAAAAAGGGTCTG 59.502 57.895 0.00 0.00 0.00 3.51
698 2562 2.687805 GGGCGAGCGAAAAAGGGTC 61.688 63.158 0.00 0.00 0.00 4.46
745 2621 1.689959 CATTGCTCTTTGCGGTGTTC 58.310 50.000 0.00 0.00 46.63 3.18
759 2635 3.174573 GTTTGGCTCGCGCATTGC 61.175 61.111 8.75 8.05 38.10 3.56
761 2637 2.612567 TTCGTTTGGCTCGCGCATT 61.613 52.632 8.75 0.00 38.10 3.56
763 2639 4.007940 GTTCGTTTGGCTCGCGCA 62.008 61.111 8.75 0.00 38.10 6.09
777 2653 3.959991 GAGGTGAGGCAGGGCGTTC 62.960 68.421 0.00 0.00 0.00 3.95
785 2662 1.459348 TGTGAGGTGAGGTGAGGCA 60.459 57.895 0.00 0.00 0.00 4.75
807 2684 1.705186 TCTTCTTCCCTTCCCTTGGTG 59.295 52.381 0.00 0.00 0.00 4.17
848 2725 1.082756 GCGGCGTCTGTGTTCTTTG 60.083 57.895 9.37 0.00 0.00 2.77
881 2758 4.475135 GCTCCTTCCTCCCACGCC 62.475 72.222 0.00 0.00 0.00 5.68
908 2789 2.045708 CGCTGTTGCCCATTGCCTA 61.046 57.895 0.00 0.00 40.16 3.93
943 2825 3.113514 TTGTGTCTCCTTGGCGCCA 62.114 57.895 29.03 29.03 0.00 5.69
954 2836 1.227556 GTGCCGTCCAGTTGTGTCT 60.228 57.895 0.00 0.00 0.00 3.41
957 2839 3.345808 CGGTGCCGTCCAGTTGTG 61.346 66.667 1.93 0.00 34.35 3.33
1298 3228 1.523258 CTCTTCAGGCGCATCCAGG 60.523 63.158 10.83 0.00 37.29 4.45
1300 3230 0.975556 TACCTCTTCAGGCGCATCCA 60.976 55.000 10.83 0.00 45.05 3.41
1312 3242 1.757699 GACGCCTGGATTCTACCTCTT 59.242 52.381 0.00 0.00 0.00 2.85
1352 3282 4.504916 CACAGGCCTCCTCGCTCG 62.505 72.222 0.00 0.00 0.00 5.03
1353 3283 4.828925 GCACAGGCCTCCTCGCTC 62.829 72.222 0.00 0.00 0.00 5.03
1356 3286 4.463879 CCTGCACAGGCCTCCTCG 62.464 72.222 0.00 0.00 42.44 4.63
1365 3295 1.135199 GCAATCAATGGACCTGCACAG 60.135 52.381 1.80 0.00 35.99 3.66
1366 3296 0.889994 GCAATCAATGGACCTGCACA 59.110 50.000 1.80 0.00 35.99 4.57
1367 3297 0.889994 TGCAATCAATGGACCTGCAC 59.110 50.000 4.84 0.00 39.19 4.57
1368 3298 0.889994 GTGCAATCAATGGACCTGCA 59.110 50.000 4.84 4.84 43.99 4.41
1369 3299 0.179156 CGTGCAATCAATGGACCTGC 60.179 55.000 0.00 0.00 46.76 4.85
1370 3300 0.179156 GCGTGCAATCAATGGACCTG 60.179 55.000 0.00 0.00 46.76 4.00
1371 3301 0.322816 AGCGTGCAATCAATGGACCT 60.323 50.000 0.00 0.00 46.76 3.85
1372 3302 0.099436 GAGCGTGCAATCAATGGACC 59.901 55.000 0.00 0.00 46.76 4.46
1373 3303 0.804364 TGAGCGTGCAATCAATGGAC 59.196 50.000 0.00 0.00 46.05 4.02
1374 3304 1.089112 CTGAGCGTGCAATCAATGGA 58.911 50.000 0.00 0.00 0.00 3.41
1375 3305 0.524816 GCTGAGCGTGCAATCAATGG 60.525 55.000 0.00 0.00 0.00 3.16
1376 3306 2.939782 GCTGAGCGTGCAATCAATG 58.060 52.632 0.00 0.00 0.00 2.82
1388 3318 2.003301 GCTATAAATAGGCCGCTGAGC 58.997 52.381 0.00 0.00 0.00 4.26
1389 3319 2.622436 GGCTATAAATAGGCCGCTGAG 58.378 52.381 11.47 0.00 46.70 3.35
1390 3320 2.762535 GGCTATAAATAGGCCGCTGA 57.237 50.000 11.47 0.00 46.70 4.26
1397 3327 5.803020 GCCATTCTTCGGCTATAAATAGG 57.197 43.478 0.00 0.00 46.56 2.57
1408 3338 2.113860 TTTCTGGAGCCATTCTTCGG 57.886 50.000 0.00 0.00 0.00 4.30
1409 3339 4.666237 GAAATTTCTGGAGCCATTCTTCG 58.334 43.478 11.05 0.00 0.00 3.79
1410 3340 4.666237 CGAAATTTCTGGAGCCATTCTTC 58.334 43.478 15.92 0.00 0.00 2.87
1411 3341 3.119352 GCGAAATTTCTGGAGCCATTCTT 60.119 43.478 15.92 0.00 0.00 2.52
1412 3342 2.424956 GCGAAATTTCTGGAGCCATTCT 59.575 45.455 15.92 0.00 0.00 2.40
1413 3343 2.164219 TGCGAAATTTCTGGAGCCATTC 59.836 45.455 15.92 0.00 0.00 2.67
1414 3344 2.165030 CTGCGAAATTTCTGGAGCCATT 59.835 45.455 15.92 0.00 0.00 3.16
1415 3345 1.747355 CTGCGAAATTTCTGGAGCCAT 59.253 47.619 15.92 0.00 0.00 4.40
1416 3346 1.167851 CTGCGAAATTTCTGGAGCCA 58.832 50.000 15.92 3.34 0.00 4.75
1417 3347 0.179153 GCTGCGAAATTTCTGGAGCC 60.179 55.000 28.56 18.46 38.31 4.70
1418 3348 0.523072 TGCTGCGAAATTTCTGGAGC 59.477 50.000 30.29 30.29 41.50 4.70
1419 3349 2.860062 CTTGCTGCGAAATTTCTGGAG 58.140 47.619 15.92 18.02 0.00 3.86
1420 3350 1.068333 GCTTGCTGCGAAATTTCTGGA 60.068 47.619 15.92 9.68 0.00 3.86
1421 3351 1.336148 TGCTTGCTGCGAAATTTCTGG 60.336 47.619 15.92 7.00 46.63 3.86
1422 3352 1.983605 CTGCTTGCTGCGAAATTTCTG 59.016 47.619 15.92 10.41 46.63 3.02
1423 3353 1.668047 GCTGCTTGCTGCGAAATTTCT 60.668 47.619 15.92 0.00 46.63 2.52
1424 3354 0.712222 GCTGCTTGCTGCGAAATTTC 59.288 50.000 8.20 8.20 46.63 2.17
1425 3355 2.818350 GCTGCTTGCTGCGAAATTT 58.182 47.368 8.58 0.00 46.63 1.82
1426 3356 4.565531 GCTGCTTGCTGCGAAATT 57.434 50.000 8.58 0.00 46.63 1.82
1432 3362 4.144681 CTCGACGCTGCTTGCTGC 62.145 66.667 13.27 13.27 40.11 5.25
1433 3363 1.560004 TTTCTCGACGCTGCTTGCTG 61.560 55.000 0.00 0.00 40.11 4.41
1434 3364 1.300931 TTTCTCGACGCTGCTTGCT 60.301 52.632 0.00 0.00 40.11 3.91
1435 3365 1.154580 GTTTCTCGACGCTGCTTGC 60.155 57.895 0.00 0.00 38.57 4.01
1436 3366 0.792640 ATGTTTCTCGACGCTGCTTG 59.207 50.000 0.00 0.00 0.00 4.01
1437 3367 1.071605 GATGTTTCTCGACGCTGCTT 58.928 50.000 0.00 0.00 0.00 3.91
1438 3368 1.073216 CGATGTTTCTCGACGCTGCT 61.073 55.000 0.00 0.00 41.12 4.24
1439 3369 1.071019 TCGATGTTTCTCGACGCTGC 61.071 55.000 0.00 0.00 42.38 5.25
1440 3370 0.910513 CTCGATGTTTCTCGACGCTG 59.089 55.000 0.00 0.00 42.38 5.18
1441 3371 0.179161 CCTCGATGTTTCTCGACGCT 60.179 55.000 0.00 0.00 42.38 5.07
1442 3372 0.179171 TCCTCGATGTTTCTCGACGC 60.179 55.000 0.00 0.00 42.38 5.19
1443 3373 1.536149 GTCCTCGATGTTTCTCGACG 58.464 55.000 0.00 0.00 42.38 5.12
1444 3374 1.129998 TCGTCCTCGATGTTTCTCGAC 59.870 52.381 0.00 0.00 42.38 4.20
1445 3375 1.445871 TCGTCCTCGATGTTTCTCGA 58.554 50.000 0.00 0.00 44.85 4.04
1446 3376 1.912110 GTTCGTCCTCGATGTTTCTCG 59.088 52.381 0.00 0.00 45.65 4.04
1447 3377 1.912110 CGTTCGTCCTCGATGTTTCTC 59.088 52.381 0.00 0.00 45.65 2.87
1448 3378 1.538512 TCGTTCGTCCTCGATGTTTCT 59.461 47.619 0.00 0.00 45.65 2.52
1449 3379 1.973138 TCGTTCGTCCTCGATGTTTC 58.027 50.000 0.00 0.00 45.65 2.78
1450 3380 2.649331 ATCGTTCGTCCTCGATGTTT 57.351 45.000 0.00 0.00 45.65 2.83
1451 3381 2.649331 AATCGTTCGTCCTCGATGTT 57.351 45.000 0.00 0.00 44.29 2.71
1452 3382 2.649331 AAATCGTTCGTCCTCGATGT 57.351 45.000 0.00 0.00 44.29 3.06
1453 3383 4.027621 CACTAAAATCGTTCGTCCTCGATG 60.028 45.833 0.00 0.00 44.29 3.84
1454 3384 4.103357 CACTAAAATCGTTCGTCCTCGAT 58.897 43.478 0.00 0.00 46.47 3.59
1455 3385 3.495193 CACTAAAATCGTTCGTCCTCGA 58.505 45.455 0.00 0.00 44.66 4.04
1456 3386 2.597305 CCACTAAAATCGTTCGTCCTCG 59.403 50.000 0.00 0.00 38.55 4.63
1457 3387 2.347755 GCCACTAAAATCGTTCGTCCTC 59.652 50.000 0.00 0.00 0.00 3.71
1458 3388 2.344025 GCCACTAAAATCGTTCGTCCT 58.656 47.619 0.00 0.00 0.00 3.85
1459 3389 1.060122 CGCCACTAAAATCGTTCGTCC 59.940 52.381 0.00 0.00 0.00 4.79
1460 3390 1.987770 TCGCCACTAAAATCGTTCGTC 59.012 47.619 0.00 0.00 0.00 4.20
1461 3391 2.068837 TCGCCACTAAAATCGTTCGT 57.931 45.000 0.00 0.00 0.00 3.85
1462 3392 2.285602 CCATCGCCACTAAAATCGTTCG 60.286 50.000 0.00 0.00 0.00 3.95
1463 3393 2.933906 TCCATCGCCACTAAAATCGTTC 59.066 45.455 0.00 0.00 0.00 3.95
1464 3394 2.676342 GTCCATCGCCACTAAAATCGTT 59.324 45.455 0.00 0.00 0.00 3.85
1465 3395 2.093658 AGTCCATCGCCACTAAAATCGT 60.094 45.455 0.00 0.00 0.00 3.73
1466 3396 2.550978 AGTCCATCGCCACTAAAATCG 58.449 47.619 0.00 0.00 0.00 3.34
1467 3397 3.312697 GGAAGTCCATCGCCACTAAAATC 59.687 47.826 0.00 0.00 35.64 2.17
1468 3398 3.279434 GGAAGTCCATCGCCACTAAAAT 58.721 45.455 0.00 0.00 35.64 1.82
1469 3399 2.039216 TGGAAGTCCATCGCCACTAAAA 59.961 45.455 0.00 0.00 42.01 1.52
1470 3400 1.626321 TGGAAGTCCATCGCCACTAAA 59.374 47.619 0.00 0.00 42.01 1.85
1471 3401 1.271856 TGGAAGTCCATCGCCACTAA 58.728 50.000 0.00 0.00 42.01 2.24
1472 3402 2.985001 TGGAAGTCCATCGCCACTA 58.015 52.632 0.00 0.00 42.01 2.74
1473 3403 3.805928 TGGAAGTCCATCGCCACT 58.194 55.556 0.00 0.00 42.01 4.00
1482 3412 2.309528 TGCGTGTGATATGGAAGTCC 57.690 50.000 0.00 0.00 0.00 3.85
1483 3413 4.572389 AGATTTGCGTGTGATATGGAAGTC 59.428 41.667 0.00 0.00 34.14 3.01
1484 3414 4.333649 CAGATTTGCGTGTGATATGGAAGT 59.666 41.667 0.00 0.00 0.00 3.01
1485 3415 4.787563 GCAGATTTGCGTGTGATATGGAAG 60.788 45.833 0.00 0.00 41.13 3.46
1486 3416 3.065233 GCAGATTTGCGTGTGATATGGAA 59.935 43.478 0.00 0.00 41.13 3.53
1487 3417 2.613595 GCAGATTTGCGTGTGATATGGA 59.386 45.455 0.00 0.00 41.13 3.41
1488 3418 2.990941 GCAGATTTGCGTGTGATATGG 58.009 47.619 0.00 0.00 41.13 2.74
1500 3430 2.154198 CACGTGTTTGCATGCAGATTTG 59.846 45.455 21.50 14.21 35.09 2.32
1501 3431 2.396601 CACGTGTTTGCATGCAGATTT 58.603 42.857 21.50 1.61 35.09 2.17
1502 3432 1.336148 CCACGTGTTTGCATGCAGATT 60.336 47.619 21.50 0.49 35.09 2.40
1503 3433 0.241749 CCACGTGTTTGCATGCAGAT 59.758 50.000 21.50 0.00 35.09 2.90
1504 3434 1.100463 ACCACGTGTTTGCATGCAGA 61.100 50.000 21.50 14.47 35.09 4.26
1505 3435 0.661187 GACCACGTGTTTGCATGCAG 60.661 55.000 21.50 11.44 35.09 4.41
1506 3436 1.358402 GACCACGTGTTTGCATGCA 59.642 52.632 18.46 18.46 35.09 3.96
1507 3437 1.371635 GGACCACGTGTTTGCATGC 60.372 57.895 15.65 11.82 35.09 4.06
1508 3438 1.285641 GGGACCACGTGTTTGCATG 59.714 57.895 15.65 0.00 37.62 4.06
1509 3439 0.539438 ATGGGACCACGTGTTTGCAT 60.539 50.000 15.65 0.82 0.00 3.96
1510 3440 1.152860 ATGGGACCACGTGTTTGCA 60.153 52.632 15.65 0.00 0.00 4.08
1511 3441 1.169661 TGATGGGACCACGTGTTTGC 61.170 55.000 15.65 6.08 0.00 3.68
1512 3442 0.591170 GTGATGGGACCACGTGTTTG 59.409 55.000 15.65 1.33 0.00 2.93
1513 3443 3.015516 GTGATGGGACCACGTGTTT 57.984 52.632 15.65 0.00 0.00 2.83
1514 3444 4.792087 GTGATGGGACCACGTGTT 57.208 55.556 15.65 0.00 0.00 3.32
1519 3449 1.375523 GGACACGTGATGGGACCAC 60.376 63.158 25.01 1.80 0.00 4.16
1520 3450 2.938086 CGGACACGTGATGGGACCA 61.938 63.158 25.01 0.00 34.81 4.02
1521 3451 2.125673 CGGACACGTGATGGGACC 60.126 66.667 25.01 13.29 34.81 4.46
1522 3452 2.125673 CCGGACACGTGATGGGAC 60.126 66.667 25.01 5.89 38.78 4.46
1523 3453 2.602267 ACCGGACACGTGATGGGA 60.602 61.111 25.01 0.00 38.78 4.37
1524 3454 2.125673 GACCGGACACGTGATGGG 60.126 66.667 25.01 20.40 38.78 4.00
1525 3455 2.125673 GGACCGGACACGTGATGG 60.126 66.667 25.01 21.30 38.78 3.51
1526 3456 1.736645 GTGGACCGGACACGTGATG 60.737 63.158 25.01 10.90 38.78 3.07
1527 3457 1.541310 ATGTGGACCGGACACGTGAT 61.541 55.000 25.01 6.44 41.64 3.06
1528 3458 2.204461 ATGTGGACCGGACACGTGA 61.204 57.895 25.01 10.24 41.64 4.35
1529 3459 2.027073 CATGTGGACCGGACACGTG 61.027 63.158 28.31 28.31 45.84 4.49
1530 3460 2.342279 CATGTGGACCGGACACGT 59.658 61.111 22.36 20.51 41.64 4.49
1531 3461 3.118454 GCATGTGGACCGGACACG 61.118 66.667 22.36 13.79 41.64 4.49
1532 3462 2.031919 TGCATGTGGACCGGACAC 59.968 61.111 21.58 21.58 39.26 3.67
1533 3463 2.347114 CTGCATGTGGACCGGACA 59.653 61.111 9.46 1.55 0.00 4.02
1534 3464 3.127533 GCTGCATGTGGACCGGAC 61.128 66.667 9.46 0.00 0.00 4.79
1535 3465 3.610619 CTGCTGCATGTGGACCGGA 62.611 63.158 9.46 0.00 0.00 5.14
1536 3466 3.129502 CTGCTGCATGTGGACCGG 61.130 66.667 1.31 0.00 0.00 5.28
1537 3467 3.807538 GCTGCTGCATGTGGACCG 61.808 66.667 11.11 0.00 39.41 4.79
1538 3468 3.446570 GGCTGCTGCATGTGGACC 61.447 66.667 17.89 0.00 41.91 4.46
1539 3469 2.270257 TTGGCTGCTGCATGTGGAC 61.270 57.895 17.89 0.00 41.91 4.02
1540 3470 2.115695 TTGGCTGCTGCATGTGGA 59.884 55.556 17.89 0.00 41.91 4.02
1541 3471 2.089887 TTGTTGGCTGCTGCATGTGG 62.090 55.000 17.89 0.00 41.91 4.17
1542 3472 0.249531 TTTGTTGGCTGCTGCATGTG 60.250 50.000 17.89 0.00 41.91 3.21
1543 3473 0.682852 ATTTGTTGGCTGCTGCATGT 59.317 45.000 17.89 0.00 41.91 3.21
1544 3474 1.337354 TGATTTGTTGGCTGCTGCATG 60.337 47.619 17.89 0.00 41.91 4.06
1545 3475 0.970640 TGATTTGTTGGCTGCTGCAT 59.029 45.000 17.89 0.56 41.91 3.96
1546 3476 0.315886 CTGATTTGTTGGCTGCTGCA 59.684 50.000 17.89 0.88 41.91 4.41
1547 3477 0.389426 CCTGATTTGTTGGCTGCTGC 60.389 55.000 7.10 7.10 38.76 5.25
1548 3478 1.250328 TCCTGATTTGTTGGCTGCTG 58.750 50.000 0.00 0.00 0.00 4.41
1549 3479 2.097825 GATCCTGATTTGTTGGCTGCT 58.902 47.619 0.00 0.00 0.00 4.24
1550 3480 2.097825 AGATCCTGATTTGTTGGCTGC 58.902 47.619 0.00 0.00 0.00 5.25
1551 3481 3.349927 TGAGATCCTGATTTGTTGGCTG 58.650 45.455 0.00 0.00 0.00 4.85
1552 3482 3.726557 TGAGATCCTGATTTGTTGGCT 57.273 42.857 0.00 0.00 0.00 4.75
1553 3483 3.760684 AGTTGAGATCCTGATTTGTTGGC 59.239 43.478 0.00 0.00 0.00 4.52
1554 3484 7.391554 TCTTTAGTTGAGATCCTGATTTGTTGG 59.608 37.037 0.00 0.00 0.00 3.77
1555 3485 8.327941 TCTTTAGTTGAGATCCTGATTTGTTG 57.672 34.615 0.00 0.00 0.00 3.33
1556 3486 8.924511 TTCTTTAGTTGAGATCCTGATTTGTT 57.075 30.769 0.00 0.00 0.00 2.83
1557 3487 7.609532 CCTTCTTTAGTTGAGATCCTGATTTGT 59.390 37.037 0.00 0.00 0.00 2.83
1558 3488 7.414984 GCCTTCTTTAGTTGAGATCCTGATTTG 60.415 40.741 0.00 0.00 0.00 2.32
1559 3489 6.601217 GCCTTCTTTAGTTGAGATCCTGATTT 59.399 38.462 0.00 0.00 0.00 2.17
1560 3490 6.118852 GCCTTCTTTAGTTGAGATCCTGATT 58.881 40.000 0.00 0.00 0.00 2.57
1561 3491 5.190528 TGCCTTCTTTAGTTGAGATCCTGAT 59.809 40.000 0.00 0.00 0.00 2.90
1562 3492 4.532126 TGCCTTCTTTAGTTGAGATCCTGA 59.468 41.667 0.00 0.00 0.00 3.86
1563 3493 4.836825 TGCCTTCTTTAGTTGAGATCCTG 58.163 43.478 0.00 0.00 0.00 3.86
1564 3494 4.534103 ACTGCCTTCTTTAGTTGAGATCCT 59.466 41.667 0.00 0.00 0.00 3.24
1565 3495 4.633565 CACTGCCTTCTTTAGTTGAGATCC 59.366 45.833 0.00 0.00 0.00 3.36
1566 3496 4.094146 GCACTGCCTTCTTTAGTTGAGATC 59.906 45.833 0.00 0.00 0.00 2.75
1567 3497 4.006319 GCACTGCCTTCTTTAGTTGAGAT 58.994 43.478 0.00 0.00 0.00 2.75
1568 3498 3.181455 TGCACTGCCTTCTTTAGTTGAGA 60.181 43.478 0.00 0.00 0.00 3.27
1569 3499 3.141398 TGCACTGCCTTCTTTAGTTGAG 58.859 45.455 0.00 0.00 0.00 3.02
1570 3500 3.207265 TGCACTGCCTTCTTTAGTTGA 57.793 42.857 0.00 0.00 0.00 3.18
1571 3501 3.829948 CATGCACTGCCTTCTTTAGTTG 58.170 45.455 0.00 0.00 0.00 3.16
1572 3502 2.229784 GCATGCACTGCCTTCTTTAGTT 59.770 45.455 14.21 0.00 45.66 2.24
1573 3503 1.815003 GCATGCACTGCCTTCTTTAGT 59.185 47.619 14.21 0.00 45.66 2.24
1574 3504 2.556534 GCATGCACTGCCTTCTTTAG 57.443 50.000 14.21 0.00 45.66 1.85
1584 3514 0.386476 AGTTGTGGTTGCATGCACTG 59.614 50.000 22.58 0.00 0.00 3.66
1585 3515 0.670162 GAGTTGTGGTTGCATGCACT 59.330 50.000 22.58 12.47 0.00 4.40
1586 3516 0.670162 AGAGTTGTGGTTGCATGCAC 59.330 50.000 22.58 15.35 0.00 4.57
1587 3517 1.879380 GTAGAGTTGTGGTTGCATGCA 59.121 47.619 18.46 18.46 0.00 3.96
1588 3518 1.879380 TGTAGAGTTGTGGTTGCATGC 59.121 47.619 11.82 11.82 0.00 4.06
1589 3519 2.877786 TGTGTAGAGTTGTGGTTGCATG 59.122 45.455 0.00 0.00 0.00 4.06
1590 3520 3.207265 TGTGTAGAGTTGTGGTTGCAT 57.793 42.857 0.00 0.00 0.00 3.96
1591 3521 2.700722 TGTGTAGAGTTGTGGTTGCA 57.299 45.000 0.00 0.00 0.00 4.08
1592 3522 2.350772 GCATGTGTAGAGTTGTGGTTGC 60.351 50.000 0.00 0.00 0.00 4.17
1593 3523 2.877786 TGCATGTGTAGAGTTGTGGTTG 59.122 45.455 0.00 0.00 0.00 3.77
1594 3524 2.878406 GTGCATGTGTAGAGTTGTGGTT 59.122 45.455 0.00 0.00 0.00 3.67
1595 3525 2.494059 GTGCATGTGTAGAGTTGTGGT 58.506 47.619 0.00 0.00 0.00 4.16
1596 3526 1.460743 CGTGCATGTGTAGAGTTGTGG 59.539 52.381 0.00 0.00 0.00 4.17
1597 3527 2.135139 ACGTGCATGTGTAGAGTTGTG 58.865 47.619 11.65 0.00 0.00 3.33
1598 3528 2.526304 ACGTGCATGTGTAGAGTTGT 57.474 45.000 11.65 0.00 0.00 3.32
1599 3529 3.181544 CGTTACGTGCATGTGTAGAGTTG 60.182 47.826 21.92 0.00 0.00 3.16
1600 3530 2.984471 CGTTACGTGCATGTGTAGAGTT 59.016 45.455 21.92 0.00 0.00 3.01
1601 3531 2.227149 TCGTTACGTGCATGTGTAGAGT 59.773 45.455 21.92 0.00 0.00 3.24
1602 3532 2.858839 TCGTTACGTGCATGTGTAGAG 58.141 47.619 21.92 8.38 0.00 2.43
1603 3533 2.981805 GTTCGTTACGTGCATGTGTAGA 59.018 45.455 21.92 13.78 0.00 2.59
1604 3534 2.984471 AGTTCGTTACGTGCATGTGTAG 59.016 45.455 21.92 11.75 0.00 2.74
1605 3535 2.981805 GAGTTCGTTACGTGCATGTGTA 59.018 45.455 21.92 7.05 0.00 2.90
1606 3536 1.790623 GAGTTCGTTACGTGCATGTGT 59.209 47.619 21.92 8.09 0.00 3.72
1607 3537 1.201661 CGAGTTCGTTACGTGCATGTG 60.202 52.381 21.92 5.16 34.11 3.21
1608 3538 1.057636 CGAGTTCGTTACGTGCATGT 58.942 50.000 17.19 17.19 34.11 3.21
1609 3539 3.830801 CGAGTTCGTTACGTGCATG 57.169 52.632 3.82 3.82 34.11 4.06
1620 3550 3.367743 TCGGGGTGGACGAGTTCG 61.368 66.667 0.00 0.00 46.33 3.95
1621 3551 2.260743 GTCGGGGTGGACGAGTTC 59.739 66.667 0.00 0.00 41.50 3.01
1622 3552 2.522436 TGTCGGGGTGGACGAGTT 60.522 61.111 0.00 0.00 41.50 3.01
1623 3553 2.989824 CTGTCGGGGTGGACGAGT 60.990 66.667 0.00 0.00 41.50 4.18
1624 3554 3.760035 CCTGTCGGGGTGGACGAG 61.760 72.222 0.00 0.00 41.50 4.18
1625 3555 3.595428 ATCCTGTCGGGGTGGACGA 62.595 63.158 0.00 0.00 39.83 4.20
1626 3556 3.075005 ATCCTGTCGGGGTGGACG 61.075 66.667 0.00 0.00 39.83 4.79
1627 3557 2.901042 GATCCTGTCGGGGTGGAC 59.099 66.667 0.00 0.00 37.45 4.02
1628 3558 2.758327 CGATCCTGTCGGGGTGGA 60.758 66.667 0.00 0.00 46.47 4.02
1636 3566 1.401905 GATTTTGCCCACGATCCTGTC 59.598 52.381 0.00 0.00 0.00 3.51
1637 3567 1.463674 GATTTTGCCCACGATCCTGT 58.536 50.000 0.00 0.00 0.00 4.00
1638 3568 0.378257 CGATTTTGCCCACGATCCTG 59.622 55.000 0.00 0.00 0.00 3.86
1639 3569 1.376609 GCGATTTTGCCCACGATCCT 61.377 55.000 0.00 0.00 0.00 3.24
1640 3570 1.064134 GCGATTTTGCCCACGATCC 59.936 57.895 0.00 0.00 0.00 3.36
1641 3571 1.295792 TAGCGATTTTGCCCACGATC 58.704 50.000 0.00 0.00 34.65 3.69
1642 3572 1.603802 CATAGCGATTTTGCCCACGAT 59.396 47.619 0.00 0.00 34.65 3.73
1643 3573 1.013596 CATAGCGATTTTGCCCACGA 58.986 50.000 0.00 0.00 34.65 4.35
1644 3574 0.592247 GCATAGCGATTTTGCCCACG 60.592 55.000 0.00 0.00 34.65 4.94
1645 3575 0.455410 TGCATAGCGATTTTGCCCAC 59.545 50.000 5.93 0.00 35.51 4.61
1646 3576 0.455410 GTGCATAGCGATTTTGCCCA 59.545 50.000 5.93 0.00 35.51 5.36
1647 3577 0.455410 TGTGCATAGCGATTTTGCCC 59.545 50.000 5.93 0.00 35.51 5.36
1648 3578 1.548986 GTGTGCATAGCGATTTTGCC 58.451 50.000 5.93 0.00 35.51 4.52
1649 3579 1.548986 GGTGTGCATAGCGATTTTGC 58.451 50.000 0.00 1.76 36.91 3.68
1650 3580 1.472082 TGGGTGTGCATAGCGATTTTG 59.528 47.619 6.56 0.00 0.00 2.44
1651 3581 1.832883 TGGGTGTGCATAGCGATTTT 58.167 45.000 6.56 0.00 0.00 1.82
1652 3582 1.472480 GTTGGGTGTGCATAGCGATTT 59.528 47.619 6.56 0.00 0.00 2.17
1653 3583 1.094785 GTTGGGTGTGCATAGCGATT 58.905 50.000 6.56 0.00 0.00 3.34
1654 3584 1.089481 CGTTGGGTGTGCATAGCGAT 61.089 55.000 6.56 0.00 0.00 4.58
1655 3585 1.739929 CGTTGGGTGTGCATAGCGA 60.740 57.895 6.56 0.00 0.00 4.93
1656 3586 1.295357 TTCGTTGGGTGTGCATAGCG 61.295 55.000 6.56 0.00 0.00 4.26
1657 3587 0.878416 TTTCGTTGGGTGTGCATAGC 59.122 50.000 3.77 3.77 0.00 2.97
1658 3588 3.243234 TGTTTTTCGTTGGGTGTGCATAG 60.243 43.478 0.00 0.00 0.00 2.23
1659 3589 2.688446 TGTTTTTCGTTGGGTGTGCATA 59.312 40.909 0.00 0.00 0.00 3.14
1660 3590 1.478510 TGTTTTTCGTTGGGTGTGCAT 59.521 42.857 0.00 0.00 0.00 3.96
1661 3591 0.888619 TGTTTTTCGTTGGGTGTGCA 59.111 45.000 0.00 0.00 0.00 4.57
1664 3594 4.177783 GTGATTTGTTTTTCGTTGGGTGT 58.822 39.130 0.00 0.00 0.00 4.16
1749 3680 0.515127 TCGCAGGCACGTGTATTTTG 59.485 50.000 18.38 9.55 0.00 2.44
1750 3681 0.796312 CTCGCAGGCACGTGTATTTT 59.204 50.000 18.38 0.00 0.00 1.82
1751 3682 1.635663 GCTCGCAGGCACGTGTATTT 61.636 55.000 18.38 0.00 0.00 1.40
1767 3698 2.032178 GTGACTTCAAAGTGTGTGGCTC 59.968 50.000 0.00 0.00 39.88 4.70
1794 3725 2.818751 TCCAGGTTTCACCACTTGTT 57.181 45.000 0.00 0.00 41.95 2.83
1795 3726 2.654863 CTTCCAGGTTTCACCACTTGT 58.345 47.619 0.00 0.00 41.95 3.16
1808 3739 2.853235 ACGAAGTTTACCCTTCCAGG 57.147 50.000 0.00 0.00 37.78 4.45
1823 3754 5.864418 ACCAAGCCACTATATCTAACGAA 57.136 39.130 0.00 0.00 0.00 3.85
1826 3757 7.676947 TGGATAACCAAGCCACTATATCTAAC 58.323 38.462 0.00 0.00 43.91 2.34
1827 3758 7.733047 TCTGGATAACCAAGCCACTATATCTAA 59.267 37.037 0.00 0.00 46.32 2.10
1829 3760 6.084738 TCTGGATAACCAAGCCACTATATCT 58.915 40.000 0.00 0.00 46.32 1.98
1832 3763 4.040461 GCTCTGGATAACCAAGCCACTATA 59.960 45.833 12.24 0.00 46.32 1.31
1837 3768 3.882131 GCTCTGGATAACCAAGCCA 57.118 52.632 12.24 0.00 46.32 4.75
1845 3776 0.261991 ACGAGGAGGGCTCTGGATAA 59.738 55.000 0.00 0.00 0.00 1.75
1914 3845 1.212490 CATGCGCCGTTTTGATGGT 59.788 52.632 4.18 0.00 0.00 3.55
1915 3846 1.516821 CCATGCGCCGTTTTGATGG 60.517 57.895 4.18 5.49 0.00 3.51
1916 3847 2.160221 GCCATGCGCCGTTTTGATG 61.160 57.895 4.18 0.00 0.00 3.07
1917 3848 2.181525 GCCATGCGCCGTTTTGAT 59.818 55.556 4.18 0.00 0.00 2.57
1918 3849 2.976840 GAGCCATGCGCCGTTTTGA 61.977 57.895 4.18 0.00 38.78 2.69
1919 3850 2.476534 AAGAGCCATGCGCCGTTTTG 62.477 55.000 4.18 0.00 38.78 2.44
1920 3851 2.268076 AAGAGCCATGCGCCGTTTT 61.268 52.632 4.18 0.00 38.78 2.43
1921 3852 2.672996 AAGAGCCATGCGCCGTTT 60.673 55.556 4.18 0.00 38.78 3.60
1922 3853 3.434319 CAAGAGCCATGCGCCGTT 61.434 61.111 4.18 0.00 38.78 4.44
1923 3854 4.704833 ACAAGAGCCATGCGCCGT 62.705 61.111 4.18 0.00 38.78 5.68
1924 3855 3.869272 GACAAGAGCCATGCGCCG 61.869 66.667 4.18 0.00 38.78 6.46
1925 3856 2.437359 AGACAAGAGCCATGCGCC 60.437 61.111 4.18 0.00 38.78 6.53
1926 3857 2.467826 GGAGACAAGAGCCATGCGC 61.468 63.158 0.00 0.00 37.98 6.09
1927 3858 0.809241 GAGGAGACAAGAGCCATGCG 60.809 60.000 0.00 0.00 0.00 4.73
1928 3859 0.809241 CGAGGAGACAAGAGCCATGC 60.809 60.000 0.00 0.00 0.00 4.06
1929 3860 0.179089 CCGAGGAGACAAGAGCCATG 60.179 60.000 0.00 0.00 0.00 3.66
1930 3861 1.965754 GCCGAGGAGACAAGAGCCAT 61.966 60.000 0.00 0.00 0.00 4.40
1931 3862 2.650116 GCCGAGGAGACAAGAGCCA 61.650 63.158 0.00 0.00 0.00 4.75
1932 3863 2.185608 GCCGAGGAGACAAGAGCC 59.814 66.667 0.00 0.00 0.00 4.70
1933 3864 2.185608 GGCCGAGGAGACAAGAGC 59.814 66.667 0.00 0.00 0.00 4.09
1934 3865 2.272918 GACGGCCGAGGAGACAAGAG 62.273 65.000 35.90 0.00 0.00 2.85
1935 3866 2.282958 ACGGCCGAGGAGACAAGA 60.283 61.111 35.90 0.00 0.00 3.02
1936 3867 2.182030 GACGGCCGAGGAGACAAG 59.818 66.667 35.90 0.00 0.00 3.16
1937 3868 2.282958 AGACGGCCGAGGAGACAA 60.283 61.111 35.90 0.00 0.00 3.18
1938 3869 2.750637 GAGACGGCCGAGGAGACA 60.751 66.667 35.90 0.00 0.00 3.41
1939 3870 2.438795 AGAGACGGCCGAGGAGAC 60.439 66.667 35.90 15.87 0.00 3.36
1940 3871 2.124653 GAGAGACGGCCGAGGAGA 60.125 66.667 35.90 0.00 0.00 3.71
1941 3872 1.720694 GAAGAGAGACGGCCGAGGAG 61.721 65.000 35.90 1.49 0.00 3.69
1942 3873 1.749638 GAAGAGAGACGGCCGAGGA 60.750 63.158 35.90 0.00 0.00 3.71
1943 3874 2.776913 GGAAGAGAGACGGCCGAGG 61.777 68.421 35.90 2.46 0.00 4.63
1944 3875 1.595993 TTGGAAGAGAGACGGCCGAG 61.596 60.000 35.90 3.42 0.00 4.63
1945 3876 1.605451 TTGGAAGAGAGACGGCCGA 60.605 57.895 35.90 0.68 0.00 5.54
1946 3877 1.446272 GTTGGAAGAGAGACGGCCG 60.446 63.158 26.86 26.86 0.00 6.13
1947 3878 0.321996 AAGTTGGAAGAGAGACGGCC 59.678 55.000 0.00 0.00 0.00 6.13
1951 3882 2.613223 CCGGGAAAGTTGGAAGAGAGAC 60.613 54.545 0.00 0.00 0.00 3.36
1963 3894 0.839946 CATCCATCCTCCGGGAAAGT 59.160 55.000 0.00 0.00 45.78 2.66
2097 4028 8.795786 TCTCAAAATAAAATCTGAACCAAACG 57.204 30.769 0.00 0.00 0.00 3.60
2127 4058 5.291614 GCACATCTGCAACTTCAAAAGAAAA 59.708 36.000 0.00 0.00 43.62 2.29
2151 4082 5.657474 CAAATCTCCTCAACATTTCCCATG 58.343 41.667 0.00 0.00 0.00 3.66
2166 4097 0.811281 CTTTGGTCCCGCAAATCTCC 59.189 55.000 0.00 0.00 0.00 3.71
2178 4109 1.812571 CCATATATGCCCGCTTTGGTC 59.187 52.381 7.24 0.00 35.15 4.02
2179 4110 1.144913 ACCATATATGCCCGCTTTGGT 59.855 47.619 7.24 0.00 35.15 3.67
2195 4126 5.228945 GGGACTACATGCATTAGTACCAT 57.771 43.478 28.00 9.12 46.45 3.55
2198 4129 5.290386 GTCAGGGACTACATGCATTAGTAC 58.710 45.833 16.72 16.72 36.02 2.73
2200 4131 3.134804 GGTCAGGGACTACATGCATTAGT 59.865 47.826 16.49 16.49 36.02 2.24
2204 5463 0.839946 GGGTCAGGGACTACATGCAT 59.160 55.000 0.00 0.00 36.02 3.96
2214 5473 0.909610 GGACATGACTGGGTCAGGGA 60.910 60.000 15.01 0.00 46.67 4.20
2216 5475 0.692476 TTGGACATGACTGGGTCAGG 59.308 55.000 10.16 10.16 46.04 3.86
2265 5524 6.016860 TGCACCAATAGACATATGAATGCTTC 60.017 38.462 10.38 0.00 36.50 3.86
2267 5526 5.379187 TGCACCAATAGACATATGAATGCT 58.621 37.500 10.38 3.82 36.50 3.79
2268 5527 5.471116 TCTGCACCAATAGACATATGAATGC 59.529 40.000 10.38 7.36 36.50 3.56
2269 5528 7.500720 TTCTGCACCAATAGACATATGAATG 57.499 36.000 10.38 0.89 39.17 2.67
2270 5529 7.255381 GCTTTCTGCACCAATAGACATATGAAT 60.255 37.037 10.38 0.00 42.31 2.57
2271 5530 6.038603 GCTTTCTGCACCAATAGACATATGAA 59.961 38.462 10.38 0.00 42.31 2.57
2278 5537 2.436417 TGGCTTTCTGCACCAATAGAC 58.564 47.619 0.00 0.00 45.15 2.59
2291 5550 2.224784 ACGACCGTACAATTTGGCTTTC 59.775 45.455 0.78 0.00 0.00 2.62
2299 5558 2.165167 TCTGAGGACGACCGTACAATT 58.835 47.619 7.57 0.00 41.83 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.