Multiple sequence alignment - TraesCS6D01G305200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G305200 chr6D 100.000 2728 0 0 1 2728 414115913 414113186 0.000000e+00 5038.0
1 TraesCS6D01G305200 chr6D 92.108 1039 61 11 1652 2687 414257006 414255986 0.000000e+00 1445.0
2 TraesCS6D01G305200 chr6D 91.252 663 46 9 1857 2517 414078235 414077583 0.000000e+00 893.0
3 TraesCS6D01G305200 chr6D 88.166 676 48 15 818 1478 414078937 414078279 0.000000e+00 776.0
4 TraesCS6D01G305200 chr6D 82.615 719 67 36 862 1544 414258065 414257369 1.820000e-162 582.0
5 TraesCS6D01G305200 chr6D 100.000 241 0 0 3274 3514 414112640 414112400 2.490000e-121 446.0
6 TraesCS6D01G305200 chr6D 81.633 539 43 27 187 694 414258758 414258245 2.540000e-106 396.0
7 TraesCS6D01G305200 chr6D 85.417 192 11 5 510 686 414079145 414078956 2.150000e-42 183.0
8 TraesCS6D01G305200 chr6D 83.333 72 10 2 113 183 120848119 120848189 8.140000e-07 65.8
9 TraesCS6D01G305200 chr6B 92.546 1033 61 13 1666 2685 624496619 624495590 0.000000e+00 1467.0
10 TraesCS6D01G305200 chr6B 91.145 1039 62 17 1647 2669 624403337 624402313 0.000000e+00 1382.0
11 TraesCS6D01G305200 chr6B 93.074 823 41 9 1867 2687 624312770 624311962 0.000000e+00 1190.0
12 TraesCS6D01G305200 chr6B 87.063 943 61 29 818 1715 624313853 624312927 0.000000e+00 1009.0
13 TraesCS6D01G305200 chr6B 88.361 842 65 13 1732 2561 624018353 624017533 0.000000e+00 981.0
14 TraesCS6D01G305200 chr6B 86.412 942 62 28 818 1715 624179110 624178191 0.000000e+00 970.0
15 TraesCS6D01G305200 chr6B 90.951 652 46 10 1867 2514 624178035 624177393 0.000000e+00 865.0
16 TraesCS6D01G305200 chr6B 84.068 703 68 25 862 1540 624497378 624496696 3.830000e-179 638.0
17 TraesCS6D01G305200 chr6B 82.431 757 72 33 805 1532 624019383 624018659 3.880000e-169 604.0
18 TraesCS6D01G305200 chr6B 86.667 285 28 5 862 1136 624409760 624409476 1.230000e-79 307.0
19 TraesCS6D01G305200 chr6B 82.620 374 40 14 313 684 624497927 624497577 1.230000e-79 307.0
20 TraesCS6D01G305200 chr6B 84.983 293 20 6 346 638 624410243 624409975 3.460000e-70 276.0
21 TraesCS6D01G305200 chr6B 81.579 304 22 14 399 684 624019725 624019438 1.640000e-53 220.0
22 TraesCS6D01G305200 chr6B 95.620 137 6 0 1741 1877 624178200 624178064 1.640000e-53 220.0
23 TraesCS6D01G305200 chr6B 92.647 136 7 1 1741 1876 624312936 624312804 3.580000e-45 193.0
24 TraesCS6D01G305200 chr6B 85.246 183 10 6 307 477 624314601 624314424 4.660000e-39 172.0
25 TraesCS6D01G305200 chr6B 84.153 183 12 6 307 477 624181546 624181369 1.010000e-35 161.0
26 TraesCS6D01G305200 chr6B 92.105 114 9 0 1 114 624467005 624466892 1.010000e-35 161.0
27 TraesCS6D01G305200 chr6B 89.091 110 8 1 189 298 624466301 624466196 2.200000e-27 134.0
28 TraesCS6D01G305200 chr6B 79.279 222 22 11 187 391 624498280 624498066 2.200000e-27 134.0
29 TraesCS6D01G305200 chr6B 88.608 79 8 1 313 391 624020088 624020011 1.040000e-15 95.3
30 TraesCS6D01G305200 chr6A 90.198 959 70 14 1647 2602 559168176 559167239 0.000000e+00 1229.0
31 TraesCS6D01G305200 chr6A 89.276 718 55 15 1857 2561 559002813 559002105 0.000000e+00 880.0
32 TraesCS6D01G305200 chr6A 90.634 662 49 10 1857 2514 559132759 559132107 0.000000e+00 867.0
33 TraesCS6D01G305200 chr6A 87.516 761 51 23 792 1541 559133727 559133000 0.000000e+00 839.0
34 TraesCS6D01G305200 chr6A 92.870 561 29 9 1957 2514 559019481 559018929 0.000000e+00 804.0
35 TraesCS6D01G305200 chr6A 85.118 551 54 17 1000 1541 559003585 559003054 3.990000e-149 538.0
36 TraesCS6D01G305200 chr6A 83.654 520 39 21 187 684 559169692 559169197 6.920000e-122 448.0
37 TraesCS6D01G305200 chr6A 88.825 349 25 11 1204 1544 559168626 559168284 1.950000e-112 416.0
38 TraesCS6D01G305200 chr6A 83.158 475 40 25 1072 1532 559020212 559019764 7.070000e-107 398.0
39 TraesCS6D01G305200 chr6A 81.149 435 48 13 187 619 559134520 559134118 5.660000e-83 318.0
40 TraesCS6D01G305200 chr6A 84.384 333 25 17 319 634 559020561 559020239 5.700000e-78 302.0
41 TraesCS6D01G305200 chr6A 85.085 295 22 11 858 1136 559169009 559168721 7.430000e-72 281.0
42 TraesCS6D01G305200 chr6A 82.650 317 26 12 319 634 559004137 559003849 1.620000e-63 254.0
43 TraesCS6D01G305200 chr6A 97.826 46 1 0 735 780 559133814 559133769 2.910000e-11 80.5
44 TraesCS6D01G305200 chrUn 88.222 450 34 13 2120 2558 395158320 395158761 1.450000e-143 520.0
45 TraesCS6D01G305200 chr3D 88.312 77 7 2 108 184 414762656 414762730 1.340000e-14 91.6
46 TraesCS6D01G305200 chr7D 89.041 73 4 3 113 183 17869538 17869468 1.740000e-13 87.9
47 TraesCS6D01G305200 chr5A 86.111 72 8 2 113 183 480807682 480807752 3.760000e-10 76.8
48 TraesCS6D01G305200 chr5A 89.474 57 4 2 113 168 339751792 339751737 1.750000e-08 71.3
49 TraesCS6D01G305200 chr7B 93.617 47 3 0 113 159 116044761 116044807 1.750000e-08 71.3
50 TraesCS6D01G305200 chr5D 87.097 62 7 1 106 166 52889604 52889665 6.290000e-08 69.4
51 TraesCS6D01G305200 chr4B 86.667 60 5 3 108 166 350457612 350457555 2.930000e-06 63.9
52 TraesCS6D01G305200 chr7A 82.432 74 7 6 113 183 569392380 569392310 3.790000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G305200 chr6D 414112400 414115913 3513 True 2742.000000 5038 100.000000 1 3514 2 chr6D.!!$R2 3513
1 TraesCS6D01G305200 chr6D 414255986 414258758 2772 True 807.666667 1445 85.452000 187 2687 3 chr6D.!!$R3 2500
2 TraesCS6D01G305200 chr6D 414077583 414079145 1562 True 617.333333 893 88.278333 510 2517 3 chr6D.!!$R1 2007
3 TraesCS6D01G305200 chr6B 624402313 624403337 1024 True 1382.000000 1382 91.145000 1647 2669 1 chr6B.!!$R1 1022
4 TraesCS6D01G305200 chr6B 624311962 624314601 2639 True 641.000000 1190 89.507500 307 2687 4 chr6B.!!$R4 2380
5 TraesCS6D01G305200 chr6B 624495590 624498280 2690 True 636.500000 1467 84.628250 187 2685 4 chr6B.!!$R7 2498
6 TraesCS6D01G305200 chr6B 624177393 624181546 4153 True 554.000000 970 89.284000 307 2514 4 chr6B.!!$R3 2207
7 TraesCS6D01G305200 chr6B 624017533 624020088 2555 True 475.075000 981 85.244750 313 2561 4 chr6B.!!$R2 2248
8 TraesCS6D01G305200 chr6B 624409476 624410243 767 True 291.500000 307 85.825000 346 1136 2 chr6B.!!$R5 790
9 TraesCS6D01G305200 chr6A 559167239 559169692 2453 True 593.500000 1229 86.940500 187 2602 4 chr6A.!!$R4 2415
10 TraesCS6D01G305200 chr6A 559002105 559004137 2032 True 557.333333 880 85.681333 319 2561 3 chr6A.!!$R1 2242
11 TraesCS6D01G305200 chr6A 559132107 559134520 2413 True 526.125000 867 89.281250 187 2514 4 chr6A.!!$R3 2327
12 TraesCS6D01G305200 chr6A 559018929 559020561 1632 True 501.333333 804 86.804000 319 2514 3 chr6A.!!$R2 2195

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
125 126 0.033011 ACATGCTACTCCCTCCGTCT 60.033 55.0 0.00 0.0 0.00 4.18 F
128 129 0.039180 TGCTACTCCCTCCGTCTCAA 59.961 55.0 0.00 0.0 0.00 3.02 F
301 305 0.110056 CGTGCCATGTTTCAGACAGC 60.110 55.0 0.00 0.0 42.62 4.40 F
1254 4466 0.178995 TGCAGCTGTTGAACCATGGA 60.179 50.0 21.47 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1254 4466 0.529337 CCATCAGCTCGTGCGAGATT 60.529 55.000 23.57 9.11 44.53 2.40 R
1323 4535 0.600255 CCGCGAACTCCTTGAACTGT 60.600 55.000 8.23 0.00 0.00 3.55 R
1865 5616 0.788391 CTTGCCTTAACGACGACACC 59.212 55.000 0.00 0.00 0.00 4.16 R
2704 6468 1.291906 CAAATTTGGACCCGGCACC 59.708 57.895 10.49 1.33 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.806608 CTGCAAAGCACCATGAAGTT 57.193 45.000 0.00 0.00 33.79 2.66
20 21 3.102052 CTGCAAAGCACCATGAAGTTT 57.898 42.857 0.00 0.00 33.79 2.66
21 22 3.460103 CTGCAAAGCACCATGAAGTTTT 58.540 40.909 0.00 0.00 33.79 2.43
22 23 4.619973 CTGCAAAGCACCATGAAGTTTTA 58.380 39.130 0.00 0.00 33.79 1.52
23 24 5.016051 TGCAAAGCACCATGAAGTTTTAA 57.984 34.783 0.00 0.00 31.71 1.52
24 25 5.609423 TGCAAAGCACCATGAAGTTTTAAT 58.391 33.333 0.00 0.00 31.71 1.40
25 26 5.466058 TGCAAAGCACCATGAAGTTTTAATG 59.534 36.000 0.00 0.00 31.71 1.90
26 27 5.615325 GCAAAGCACCATGAAGTTTTAATGC 60.615 40.000 0.00 0.00 0.00 3.56
27 28 3.836949 AGCACCATGAAGTTTTAATGCG 58.163 40.909 0.00 0.00 36.93 4.73
28 29 3.255642 AGCACCATGAAGTTTTAATGCGT 59.744 39.130 0.00 0.00 36.93 5.24
29 30 4.457603 AGCACCATGAAGTTTTAATGCGTA 59.542 37.500 0.00 0.00 36.93 4.42
30 31 4.557301 GCACCATGAAGTTTTAATGCGTAC 59.443 41.667 0.00 0.00 0.00 3.67
31 32 5.694816 CACCATGAAGTTTTAATGCGTACA 58.305 37.500 0.00 0.00 0.00 2.90
32 33 5.794945 CACCATGAAGTTTTAATGCGTACAG 59.205 40.000 0.00 0.00 0.00 2.74
33 34 5.106317 ACCATGAAGTTTTAATGCGTACAGG 60.106 40.000 0.00 0.00 0.00 4.00
34 35 5.123186 CCATGAAGTTTTAATGCGTACAGGA 59.877 40.000 0.00 0.00 0.00 3.86
35 36 5.856126 TGAAGTTTTAATGCGTACAGGAG 57.144 39.130 0.00 0.00 0.00 3.69
36 37 5.302360 TGAAGTTTTAATGCGTACAGGAGT 58.698 37.500 0.00 0.00 0.00 3.85
37 38 5.178623 TGAAGTTTTAATGCGTACAGGAGTG 59.821 40.000 0.00 0.00 0.00 3.51
38 39 3.435671 AGTTTTAATGCGTACAGGAGTGC 59.564 43.478 0.00 0.00 0.00 4.40
39 40 2.753055 TTAATGCGTACAGGAGTGCA 57.247 45.000 0.00 0.00 42.22 4.57
40 41 2.293677 TAATGCGTACAGGAGTGCAG 57.706 50.000 0.00 0.00 41.19 4.41
41 42 1.021390 AATGCGTACAGGAGTGCAGC 61.021 55.000 0.00 0.00 41.19 5.25
42 43 2.048222 GCGTACAGGAGTGCAGCA 60.048 61.111 0.00 0.00 33.12 4.41
43 44 1.667830 GCGTACAGGAGTGCAGCAA 60.668 57.895 0.00 0.00 33.12 3.91
44 45 1.901650 GCGTACAGGAGTGCAGCAAC 61.902 60.000 0.00 0.00 33.12 4.17
45 46 0.319900 CGTACAGGAGTGCAGCAACT 60.320 55.000 0.00 0.00 0.00 3.16
46 47 1.151668 GTACAGGAGTGCAGCAACTG 58.848 55.000 17.16 17.16 35.40 3.16
47 48 0.035317 TACAGGAGTGCAGCAACTGG 59.965 55.000 20.82 4.85 33.63 4.00
48 49 1.228063 CAGGAGTGCAGCAACTGGT 60.228 57.895 12.87 0.00 31.21 4.00
49 50 1.228063 AGGAGTGCAGCAACTGGTG 60.228 57.895 0.00 4.53 45.58 4.17
59 60 2.571548 CAACTGGTGCTCCCATTCC 58.428 57.895 1.59 0.00 44.15 3.01
60 61 0.038744 CAACTGGTGCTCCCATTCCT 59.961 55.000 1.59 0.00 44.15 3.36
61 62 1.281867 CAACTGGTGCTCCCATTCCTA 59.718 52.381 1.59 0.00 44.15 2.94
62 63 0.912486 ACTGGTGCTCCCATTCCTAC 59.088 55.000 1.59 0.00 44.15 3.18
63 64 1.207791 CTGGTGCTCCCATTCCTACT 58.792 55.000 1.59 0.00 44.15 2.57
64 65 1.561542 CTGGTGCTCCCATTCCTACTT 59.438 52.381 1.59 0.00 44.15 2.24
65 66 1.992557 TGGTGCTCCCATTCCTACTTT 59.007 47.619 1.59 0.00 38.72 2.66
66 67 3.186283 TGGTGCTCCCATTCCTACTTTA 58.814 45.455 1.59 0.00 38.72 1.85
67 68 3.589735 TGGTGCTCCCATTCCTACTTTAA 59.410 43.478 1.59 0.00 38.72 1.52
68 69 4.200092 GGTGCTCCCATTCCTACTTTAAG 58.800 47.826 0.00 0.00 0.00 1.85
69 70 3.628032 GTGCTCCCATTCCTACTTTAAGC 59.372 47.826 0.00 0.00 0.00 3.09
70 71 3.215151 GCTCCCATTCCTACTTTAAGCC 58.785 50.000 0.00 0.00 0.00 4.35
71 72 3.467803 CTCCCATTCCTACTTTAAGCCG 58.532 50.000 0.00 0.00 0.00 5.52
72 73 3.109151 TCCCATTCCTACTTTAAGCCGA 58.891 45.455 0.00 0.00 0.00 5.54
73 74 3.118519 TCCCATTCCTACTTTAAGCCGAC 60.119 47.826 0.00 0.00 0.00 4.79
74 75 3.203716 CCATTCCTACTTTAAGCCGACC 58.796 50.000 0.00 0.00 0.00 4.79
75 76 2.660189 TTCCTACTTTAAGCCGACCG 57.340 50.000 0.00 0.00 0.00 4.79
76 77 1.549203 TCCTACTTTAAGCCGACCGT 58.451 50.000 0.00 0.00 0.00 4.83
77 78 1.474077 TCCTACTTTAAGCCGACCGTC 59.526 52.381 0.00 0.00 0.00 4.79
78 79 1.203052 CCTACTTTAAGCCGACCGTCA 59.797 52.381 0.00 0.00 0.00 4.35
79 80 2.257034 CTACTTTAAGCCGACCGTCAC 58.743 52.381 0.00 0.00 0.00 3.67
80 81 0.390124 ACTTTAAGCCGACCGTCACA 59.610 50.000 0.00 0.00 0.00 3.58
81 82 0.788391 CTTTAAGCCGACCGTCACAC 59.212 55.000 0.00 0.00 0.00 3.82
82 83 0.104487 TTTAAGCCGACCGTCACACA 59.896 50.000 0.00 0.00 0.00 3.72
83 84 0.319211 TTAAGCCGACCGTCACACAG 60.319 55.000 0.00 0.00 0.00 3.66
84 85 2.149803 TAAGCCGACCGTCACACAGG 62.150 60.000 0.00 0.00 0.00 4.00
85 86 3.986006 GCCGACCGTCACACAGGA 61.986 66.667 0.00 0.00 0.00 3.86
86 87 2.258591 CCGACCGTCACACAGGAG 59.741 66.667 0.00 0.00 0.00 3.69
87 88 2.561956 CCGACCGTCACACAGGAGT 61.562 63.158 0.00 0.00 0.00 3.85
88 89 1.362717 CGACCGTCACACAGGAGTT 59.637 57.895 0.00 0.00 0.00 3.01
89 90 0.249322 CGACCGTCACACAGGAGTTT 60.249 55.000 0.00 0.00 0.00 2.66
90 91 1.217882 GACCGTCACACAGGAGTTTG 58.782 55.000 0.00 0.00 0.00 2.93
91 92 0.179056 ACCGTCACACAGGAGTTTGG 60.179 55.000 0.00 0.00 0.00 3.28
92 93 0.105964 CCGTCACACAGGAGTTTGGA 59.894 55.000 0.00 0.00 0.00 3.53
93 94 1.217882 CGTCACACAGGAGTTTGGAC 58.782 55.000 0.00 0.00 0.00 4.02
94 95 1.472552 CGTCACACAGGAGTTTGGACA 60.473 52.381 0.00 0.00 0.00 4.02
95 96 2.639065 GTCACACAGGAGTTTGGACAA 58.361 47.619 0.00 0.00 0.00 3.18
96 97 2.354821 GTCACACAGGAGTTTGGACAAC 59.645 50.000 0.00 0.00 0.00 3.32
97 98 2.026729 TCACACAGGAGTTTGGACAACA 60.027 45.455 0.00 0.00 0.00 3.33
98 99 2.752354 CACACAGGAGTTTGGACAACAA 59.248 45.455 0.00 0.00 37.28 2.83
99 100 3.016736 ACACAGGAGTTTGGACAACAAG 58.983 45.455 0.00 0.00 40.82 3.16
100 101 3.016736 CACAGGAGTTTGGACAACAAGT 58.983 45.455 0.00 0.00 40.82 3.16
101 102 3.016736 ACAGGAGTTTGGACAACAAGTG 58.983 45.455 0.00 0.00 40.82 3.16
102 103 3.278574 CAGGAGTTTGGACAACAAGTGA 58.721 45.455 0.00 0.00 40.82 3.41
103 104 3.885297 CAGGAGTTTGGACAACAAGTGAT 59.115 43.478 0.00 0.00 40.82 3.06
104 105 4.023707 CAGGAGTTTGGACAACAAGTGATC 60.024 45.833 0.00 0.00 40.82 2.92
105 106 4.137543 GGAGTTTGGACAACAAGTGATCT 58.862 43.478 0.00 0.00 40.82 2.75
106 107 5.071788 AGGAGTTTGGACAACAAGTGATCTA 59.928 40.000 0.00 0.00 40.82 1.98
107 108 5.179555 GGAGTTTGGACAACAAGTGATCTAC 59.820 44.000 0.00 0.00 40.82 2.59
108 109 5.680619 AGTTTGGACAACAAGTGATCTACA 58.319 37.500 0.00 0.00 40.82 2.74
109 110 6.299141 AGTTTGGACAACAAGTGATCTACAT 58.701 36.000 0.00 0.00 40.82 2.29
110 111 6.205464 AGTTTGGACAACAAGTGATCTACATG 59.795 38.462 0.00 0.00 40.82 3.21
111 112 4.002982 TGGACAACAAGTGATCTACATGC 58.997 43.478 0.00 0.00 31.33 4.06
112 113 4.256920 GGACAACAAGTGATCTACATGCT 58.743 43.478 0.00 0.00 31.33 3.79
113 114 5.046663 TGGACAACAAGTGATCTACATGCTA 60.047 40.000 0.00 0.00 31.33 3.49
114 115 5.292101 GGACAACAAGTGATCTACATGCTAC 59.708 44.000 0.00 0.00 31.33 3.58
115 116 6.042638 ACAACAAGTGATCTACATGCTACT 57.957 37.500 0.00 0.00 31.33 2.57
116 117 6.102663 ACAACAAGTGATCTACATGCTACTC 58.897 40.000 0.00 0.00 31.33 2.59
117 118 5.269505 ACAAGTGATCTACATGCTACTCC 57.730 43.478 0.00 0.00 31.33 3.85
118 119 4.100189 ACAAGTGATCTACATGCTACTCCC 59.900 45.833 0.00 0.00 31.33 4.30
119 120 4.191804 AGTGATCTACATGCTACTCCCT 57.808 45.455 0.00 0.00 0.00 4.20
120 121 4.148838 AGTGATCTACATGCTACTCCCTC 58.851 47.826 0.00 0.00 0.00 4.30
121 122 3.257127 GTGATCTACATGCTACTCCCTCC 59.743 52.174 0.00 0.00 0.00 4.30
122 123 1.982660 TCTACATGCTACTCCCTCCG 58.017 55.000 0.00 0.00 0.00 4.63
123 124 1.214673 TCTACATGCTACTCCCTCCGT 59.785 52.381 0.00 0.00 0.00 4.69
124 125 1.609555 CTACATGCTACTCCCTCCGTC 59.390 57.143 0.00 0.00 0.00 4.79
125 126 0.033011 ACATGCTACTCCCTCCGTCT 60.033 55.000 0.00 0.00 0.00 4.18
126 127 0.671251 CATGCTACTCCCTCCGTCTC 59.329 60.000 0.00 0.00 0.00 3.36
127 128 0.259065 ATGCTACTCCCTCCGTCTCA 59.741 55.000 0.00 0.00 0.00 3.27
128 129 0.039180 TGCTACTCCCTCCGTCTCAA 59.961 55.000 0.00 0.00 0.00 3.02
129 130 1.183549 GCTACTCCCTCCGTCTCAAA 58.816 55.000 0.00 0.00 0.00 2.69
130 131 1.549170 GCTACTCCCTCCGTCTCAAAA 59.451 52.381 0.00 0.00 0.00 2.44
131 132 2.168728 GCTACTCCCTCCGTCTCAAAAT 59.831 50.000 0.00 0.00 0.00 1.82
132 133 3.383825 GCTACTCCCTCCGTCTCAAAATA 59.616 47.826 0.00 0.00 0.00 1.40
133 134 4.142004 GCTACTCCCTCCGTCTCAAAATAA 60.142 45.833 0.00 0.00 0.00 1.40
134 135 4.903045 ACTCCCTCCGTCTCAAAATAAA 57.097 40.909 0.00 0.00 0.00 1.40
135 136 5.437191 ACTCCCTCCGTCTCAAAATAAAT 57.563 39.130 0.00 0.00 0.00 1.40
136 137 5.186198 ACTCCCTCCGTCTCAAAATAAATG 58.814 41.667 0.00 0.00 0.00 2.32
137 138 5.045869 ACTCCCTCCGTCTCAAAATAAATGA 60.046 40.000 0.00 0.00 0.00 2.57
138 139 5.183228 TCCCTCCGTCTCAAAATAAATGAC 58.817 41.667 0.00 0.00 0.00 3.06
139 140 5.045869 TCCCTCCGTCTCAAAATAAATGACT 60.046 40.000 0.00 0.00 0.00 3.41
140 141 5.294552 CCCTCCGTCTCAAAATAAATGACTC 59.705 44.000 0.00 0.00 0.00 3.36
141 142 5.874810 CCTCCGTCTCAAAATAAATGACTCA 59.125 40.000 0.00 0.00 0.00 3.41
142 143 6.183360 CCTCCGTCTCAAAATAAATGACTCAC 60.183 42.308 0.00 0.00 0.00 3.51
143 144 6.464222 TCCGTCTCAAAATAAATGACTCACT 58.536 36.000 0.00 0.00 0.00 3.41
144 145 6.934645 TCCGTCTCAAAATAAATGACTCACTT 59.065 34.615 0.00 0.00 0.00 3.16
145 146 7.444183 TCCGTCTCAAAATAAATGACTCACTTT 59.556 33.333 0.00 0.00 0.00 2.66
146 147 8.076178 CCGTCTCAAAATAAATGACTCACTTTT 58.924 33.333 0.00 0.00 0.00 2.27
182 183 9.871238 TTATACTAAGGCTACTTCAAAGTTGAG 57.129 33.333 8.25 0.00 40.37 3.02
183 184 4.998033 ACTAAGGCTACTTCAAAGTTGAGC 59.002 41.667 8.25 8.39 39.01 4.26
184 185 2.417719 AGGCTACTTCAAAGTTGAGCG 58.582 47.619 8.25 0.00 40.07 5.03
185 186 1.464997 GGCTACTTCAAAGTTGAGCGG 59.535 52.381 8.25 0.00 40.07 5.52
300 304 1.229428 ACGTGCCATGTTTCAGACAG 58.771 50.000 0.00 0.00 42.62 3.51
301 305 0.110056 CGTGCCATGTTTCAGACAGC 60.110 55.000 0.00 0.00 42.62 4.40
303 307 0.953727 TGCCATGTTTCAGACAGCAC 59.046 50.000 0.00 0.00 42.62 4.40
304 308 0.953727 GCCATGTTTCAGACAGCACA 59.046 50.000 0.00 0.00 42.62 4.57
305 309 1.335324 GCCATGTTTCAGACAGCACAC 60.335 52.381 0.00 0.00 42.62 3.82
308 312 2.106477 TGTTTCAGACAGCACACACA 57.894 45.000 0.00 0.00 33.40 3.72
329 353 3.434641 CACAGCAGTCAAAGTGATCGATT 59.565 43.478 0.00 0.00 33.99 3.34
432 952 7.338703 TCTGTCATTATCGACCTGTAAAGTAGT 59.661 37.037 0.00 0.00 34.88 2.73
433 953 8.510243 TGTCATTATCGACCTGTAAAGTAGTA 57.490 34.615 0.00 0.00 34.88 1.82
456 976 2.803956 AGAGACAACTCCATCCGTACA 58.196 47.619 0.00 0.00 43.53 2.90
486 1010 3.769739 TCATCAACACTGGCTACTTGT 57.230 42.857 0.00 0.00 0.00 3.16
523 1083 5.543020 GGTTAGGTACATAGAATAGTGGCCT 59.457 44.000 3.32 0.00 0.00 5.19
638 1637 5.723672 TGGAGACAACTTGGTTAGAGTAG 57.276 43.478 0.00 0.00 37.44 2.57
656 1881 1.736645 GGTGTGTGTCGATCCGGTG 60.737 63.158 0.00 0.00 0.00 4.94
660 1885 2.272447 TGTGTCGATCCGGTGAGCA 61.272 57.895 0.00 0.00 0.00 4.26
695 1920 1.132588 GCTCACGCTGATCCGATTAC 58.867 55.000 0.00 0.00 0.00 1.89
696 1921 1.269309 GCTCACGCTGATCCGATTACT 60.269 52.381 0.00 0.00 0.00 2.24
698 1923 3.448686 CTCACGCTGATCCGATTACTTT 58.551 45.455 0.00 0.00 0.00 2.66
699 1924 3.857052 TCACGCTGATCCGATTACTTTT 58.143 40.909 0.00 0.00 0.00 2.27
783 3833 1.351350 GTCCCTACAGCTTTGTTCCCT 59.649 52.381 0.00 0.00 0.00 4.20
807 3879 9.573166 CCTATTCCATATTGACCAAAGTGATTA 57.427 33.333 0.00 0.00 0.00 1.75
810 3882 8.877864 TTCCATATTGACCAAAGTGATTAACT 57.122 30.769 0.00 0.00 42.60 2.24
812 3884 9.967451 TCCATATTGACCAAAGTGATTAACTAA 57.033 29.630 0.00 0.00 38.56 2.24
842 3918 3.740590 CTGTGTCGTAATCTCGTACGTT 58.259 45.455 16.05 4.95 45.56 3.99
914 4026 2.029518 CCTCAGAGCGCACACACA 59.970 61.111 11.47 0.00 0.00 3.72
1042 4170 2.786495 GCCTCGATGAGCTTCCCGA 61.786 63.158 0.00 0.00 0.00 5.14
1059 4187 3.199727 TCCCGATGATCAACATGGAGAAA 59.800 43.478 0.00 0.00 39.56 2.52
1136 4264 2.665603 GGGCTTCTTCGAGGTGCT 59.334 61.111 12.73 0.00 0.00 4.40
1137 4265 1.003233 GGGCTTCTTCGAGGTGCTT 60.003 57.895 12.73 0.00 0.00 3.91
1138 4266 1.301677 GGGCTTCTTCGAGGTGCTTG 61.302 60.000 12.73 0.00 0.00 4.01
1141 4269 1.396301 GCTTCTTCGAGGTGCTTGATG 59.604 52.381 7.69 0.00 0.00 3.07
1142 4270 2.932622 GCTTCTTCGAGGTGCTTGATGA 60.933 50.000 7.69 0.00 0.00 2.92
1147 4275 0.994995 CGAGGTGCTTGATGACGAAG 59.005 55.000 0.00 0.00 0.00 3.79
1191 4341 5.411361 AGTGATTTATTAACGCAGTGCTTGA 59.589 36.000 14.33 4.06 45.00 3.02
1192 4342 6.094048 AGTGATTTATTAACGCAGTGCTTGAT 59.906 34.615 14.33 10.81 45.00 2.57
1193 4343 6.195244 GTGATTTATTAACGCAGTGCTTGATG 59.805 38.462 14.33 0.00 45.00 3.07
1201 4354 6.435430 AACGCAGTGCTTGATGATATTTAA 57.565 33.333 14.33 0.00 45.00 1.52
1254 4466 0.178995 TGCAGCTGTTGAACCATGGA 60.179 50.000 21.47 0.00 0.00 3.41
1488 4704 4.679955 TACGCACGCACGCACGTA 62.680 61.111 12.30 12.30 46.34 3.57
1509 4729 8.002107 CACGTACGCCTGATTACTTAATTAATG 58.998 37.037 16.72 0.00 0.00 1.90
1532 4752 5.066117 TGAACTACGGCTACTTAGATCACTG 59.934 44.000 0.00 0.00 29.39 3.66
1533 4753 3.884091 ACTACGGCTACTTAGATCACTGG 59.116 47.826 0.00 0.00 0.00 4.00
1548 4909 9.639601 TTAGATCACTGGCTAATAATAACATCG 57.360 33.333 0.00 0.00 0.00 3.84
1565 4926 4.250464 ACATCGGCTTCGACAGAAATTAA 58.750 39.130 0.00 0.00 46.32 1.40
1592 4953 1.808945 GCAGATTCAACTCCAGTGTGG 59.191 52.381 0.00 0.00 39.43 4.17
1601 4962 3.290948 ACTCCAGTGTGGTTTTTGCTA 57.709 42.857 0.00 0.00 39.03 3.49
1635 5031 3.345737 CTGACGAAGCAGCCGATTA 57.654 52.632 0.00 0.00 0.00 1.75
1636 5032 1.858091 CTGACGAAGCAGCCGATTAT 58.142 50.000 0.00 0.00 0.00 1.28
1638 5034 3.579709 CTGACGAAGCAGCCGATTATAT 58.420 45.455 0.00 0.00 0.00 0.86
1640 5036 5.324784 TGACGAAGCAGCCGATTATATAT 57.675 39.130 0.00 0.00 0.00 0.86
1681 5330 5.049405 GTCTTGTACACAAAGTCATTCCTGG 60.049 44.000 0.00 0.00 35.15 4.45
1730 5403 5.293814 CAGCAGATATAGTATCATTGCTGCC 59.706 44.000 20.46 6.75 46.82 4.85
1740 5413 2.854963 TCATTGCTGCCAGGATATCAC 58.145 47.619 4.83 0.00 0.00 3.06
1744 5417 0.761187 GCTGCCAGGATATCACCAGA 59.239 55.000 4.83 0.00 0.00 3.86
1778 5452 3.281727 TGGGCACATCAGAATCCTAAC 57.718 47.619 0.00 0.00 0.00 2.34
1783 5457 5.396884 GGGCACATCAGAATCCTAACTAAGT 60.397 44.000 0.00 0.00 0.00 2.24
1865 5616 5.984926 TCTCATAACAAAAGCTGCCTTTTTG 59.015 36.000 19.44 19.44 46.33 2.44
1877 5628 1.598601 GCCTTTTTGGTGTCGTCGTTA 59.401 47.619 0.00 0.00 38.35 3.18
1949 5701 2.031012 CTGGACCTGCTGTGCGAA 59.969 61.111 0.00 0.00 38.31 4.70
2111 5863 0.955428 GCGTGATCCTGCTGTTCCAA 60.955 55.000 0.00 0.00 0.00 3.53
2597 6360 0.833949 TGCCATGTATCCGGTTAGCA 59.166 50.000 0.00 0.36 0.00 3.49
2603 6366 5.183140 GCCATGTATCCGGTTAGCATTATTT 59.817 40.000 0.00 0.00 0.00 1.40
2642 6406 5.163385 TGGGTAATGTATTTTCGAGTCCGAT 60.163 40.000 0.00 0.00 45.10 4.18
2687 6451 6.697019 CACTAAATTCCGGGCATTTCTATTTG 59.303 38.462 7.93 0.00 0.00 2.32
2688 6452 4.670896 AATTCCGGGCATTTCTATTTGG 57.329 40.909 0.00 0.00 0.00 3.28
2689 6453 2.065899 TCCGGGCATTTCTATTTGGG 57.934 50.000 0.00 0.00 0.00 4.12
2690 6454 0.389025 CCGGGCATTTCTATTTGGGC 59.611 55.000 0.00 0.00 0.00 5.36
2691 6455 1.110442 CGGGCATTTCTATTTGGGCA 58.890 50.000 0.00 0.00 0.00 5.36
2692 6456 1.067516 CGGGCATTTCTATTTGGGCAG 59.932 52.381 0.00 0.00 0.00 4.85
2693 6457 2.110578 GGGCATTTCTATTTGGGCAGT 58.889 47.619 0.00 0.00 0.00 4.40
2694 6458 2.159057 GGGCATTTCTATTTGGGCAGTG 60.159 50.000 0.00 0.00 0.00 3.66
2695 6459 2.760092 GGCATTTCTATTTGGGCAGTGA 59.240 45.455 0.00 0.00 0.00 3.41
2696 6460 3.385755 GGCATTTCTATTTGGGCAGTGAT 59.614 43.478 0.00 0.00 0.00 3.06
2697 6461 4.584325 GGCATTTCTATTTGGGCAGTGATA 59.416 41.667 0.00 0.00 0.00 2.15
2698 6462 5.507985 GGCATTTCTATTTGGGCAGTGATAC 60.508 44.000 0.00 0.00 0.00 2.24
2699 6463 5.751680 CATTTCTATTTGGGCAGTGATACG 58.248 41.667 0.00 0.00 0.00 3.06
2700 6464 2.833794 TCTATTTGGGCAGTGATACGC 58.166 47.619 0.00 0.00 0.00 4.42
2701 6465 1.526887 CTATTTGGGCAGTGATACGCG 59.473 52.381 3.53 3.53 0.00 6.01
2702 6466 1.714899 ATTTGGGCAGTGATACGCGC 61.715 55.000 5.73 0.00 41.14 6.86
2703 6467 4.830765 TGGGCAGTGATACGCGCC 62.831 66.667 5.73 0.00 44.10 6.53
2707 6471 3.254654 CAGTGATACGCGCCGGTG 61.255 66.667 11.67 11.67 0.00 4.94
2720 6484 2.675075 CGGTGCCGGGTCCAAATT 60.675 61.111 2.18 0.00 35.56 1.82
2721 6485 2.272447 CGGTGCCGGGTCCAAATTT 61.272 57.895 2.18 0.00 35.56 1.82
2722 6486 1.291906 GGTGCCGGGTCCAAATTTG 59.708 57.895 11.40 11.40 0.00 2.32
3301 7065 4.394712 GACGTGTCCCTGCCCCAG 62.395 72.222 0.00 0.00 0.00 4.45
3307 7071 4.346889 TCCCTGCCCCAGCCACTA 62.347 66.667 0.00 0.00 38.69 2.74
3308 7072 4.115199 CCCTGCCCCAGCCACTAC 62.115 72.222 0.00 0.00 38.69 2.73
3309 7073 4.473520 CCTGCCCCAGCCACTACG 62.474 72.222 0.00 0.00 38.69 3.51
3310 7074 3.706373 CTGCCCCAGCCACTACGT 61.706 66.667 0.00 0.00 38.69 3.57
3311 7075 3.958147 CTGCCCCAGCCACTACGTG 62.958 68.421 0.00 0.00 38.69 4.49
3314 7078 4.373116 CCCAGCCACTACGTGCGT 62.373 66.667 0.00 2.05 31.34 5.24
3315 7079 2.357034 CCAGCCACTACGTGCGTT 60.357 61.111 1.66 0.00 31.34 4.84
3316 7080 1.959226 CCAGCCACTACGTGCGTTT 60.959 57.895 1.66 0.00 31.34 3.60
3317 7081 1.204062 CAGCCACTACGTGCGTTTG 59.796 57.895 1.66 1.11 31.34 2.93
3318 7082 2.127383 GCCACTACGTGCGTTTGC 60.127 61.111 1.66 0.00 43.20 3.68
3328 7092 3.637714 GCGTTTGCACCTTCGAGA 58.362 55.556 0.00 0.00 42.15 4.04
3329 7093 1.204312 GCGTTTGCACCTTCGAGAC 59.796 57.895 0.00 0.00 42.15 3.36
3330 7094 1.487231 CGTTTGCACCTTCGAGACG 59.513 57.895 0.00 0.00 0.00 4.18
3331 7095 1.213094 CGTTTGCACCTTCGAGACGT 61.213 55.000 0.00 0.00 0.00 4.34
3332 7096 0.232303 GTTTGCACCTTCGAGACGTG 59.768 55.000 0.00 4.70 0.00 4.49
3333 7097 0.103390 TTTGCACCTTCGAGACGTGA 59.897 50.000 11.46 0.00 0.00 4.35
3334 7098 0.103390 TTGCACCTTCGAGACGTGAA 59.897 50.000 11.46 0.00 0.00 3.18
3335 7099 0.103390 TGCACCTTCGAGACGTGAAA 59.897 50.000 11.46 0.00 0.00 2.69
3336 7100 0.784778 GCACCTTCGAGACGTGAAAG 59.215 55.000 11.46 0.00 0.00 2.62
3337 7101 0.784778 CACCTTCGAGACGTGAAAGC 59.215 55.000 0.00 0.00 0.00 3.51
3338 7102 0.387929 ACCTTCGAGACGTGAAAGCA 59.612 50.000 0.00 0.00 0.00 3.91
3339 7103 0.784778 CCTTCGAGACGTGAAAGCAC 59.215 55.000 0.00 0.00 41.67 4.40
3340 7104 0.784778 CTTCGAGACGTGAAAGCACC 59.215 55.000 0.00 0.00 42.09 5.01
3341 7105 0.599204 TTCGAGACGTGAAAGCACCC 60.599 55.000 0.00 0.00 42.09 4.61
3342 7106 1.300620 CGAGACGTGAAAGCACCCA 60.301 57.895 0.00 0.00 42.09 4.51
3343 7107 1.557443 CGAGACGTGAAAGCACCCAC 61.557 60.000 0.00 0.00 42.09 4.61
3347 7111 3.340789 GTGAAAGCACCCACGTCC 58.659 61.111 0.00 0.00 39.14 4.79
3348 7112 1.227853 GTGAAAGCACCCACGTCCT 60.228 57.895 0.00 0.00 39.14 3.85
3349 7113 1.070786 TGAAAGCACCCACGTCCTC 59.929 57.895 0.00 0.00 0.00 3.71
3350 7114 1.371558 GAAAGCACCCACGTCCTCT 59.628 57.895 0.00 0.00 0.00 3.69
3351 7115 0.670854 GAAAGCACCCACGTCCTCTC 60.671 60.000 0.00 0.00 0.00 3.20
3352 7116 2.113243 AAAGCACCCACGTCCTCTCC 62.113 60.000 0.00 0.00 0.00 3.71
3353 7117 4.083862 GCACCCACGTCCTCTCCC 62.084 72.222 0.00 0.00 0.00 4.30
3354 7118 2.283966 CACCCACGTCCTCTCCCT 60.284 66.667 0.00 0.00 0.00 4.20
3355 7119 2.037527 ACCCACGTCCTCTCCCTC 59.962 66.667 0.00 0.00 0.00 4.30
3356 7120 3.141488 CCCACGTCCTCTCCCTCG 61.141 72.222 0.00 0.00 0.00 4.63
3357 7121 3.827898 CCACGTCCTCTCCCTCGC 61.828 72.222 0.00 0.00 0.00 5.03
3358 7122 2.752238 CACGTCCTCTCCCTCGCT 60.752 66.667 0.00 0.00 0.00 4.93
3359 7123 2.752238 ACGTCCTCTCCCTCGCTG 60.752 66.667 0.00 0.00 0.00 5.18
3360 7124 2.752238 CGTCCTCTCCCTCGCTGT 60.752 66.667 0.00 0.00 0.00 4.40
3361 7125 2.766400 CGTCCTCTCCCTCGCTGTC 61.766 68.421 0.00 0.00 0.00 3.51
3362 7126 2.438614 TCCTCTCCCTCGCTGTCG 60.439 66.667 0.00 0.00 0.00 4.35
3363 7127 4.200283 CCTCTCCCTCGCTGTCGC 62.200 72.222 0.00 0.00 35.26 5.19
3364 7128 4.200283 CTCTCCCTCGCTGTCGCC 62.200 72.222 0.00 0.00 35.26 5.54
3370 7134 4.862092 CTCGCTGTCGCCGCTCAT 62.862 66.667 0.00 0.00 35.26 2.90
3371 7135 4.854784 TCGCTGTCGCCGCTCATC 62.855 66.667 0.00 0.00 35.26 2.92
3381 7145 3.561213 CGCTCATCGCAGCACCAG 61.561 66.667 0.00 0.00 39.62 4.00
3382 7146 3.873883 GCTCATCGCAGCACCAGC 61.874 66.667 0.00 0.00 39.43 4.85
3392 7156 4.459089 GCACCAGCGTCCTCTCCC 62.459 72.222 0.00 0.00 0.00 4.30
3393 7157 2.681778 CACCAGCGTCCTCTCCCT 60.682 66.667 0.00 0.00 0.00 4.20
3394 7158 2.363147 ACCAGCGTCCTCTCCCTC 60.363 66.667 0.00 0.00 0.00 4.30
3395 7159 2.363018 CCAGCGTCCTCTCCCTCA 60.363 66.667 0.00 0.00 0.00 3.86
3396 7160 2.716017 CCAGCGTCCTCTCCCTCAC 61.716 68.421 0.00 0.00 0.00 3.51
3397 7161 2.363147 AGCGTCCTCTCCCTCACC 60.363 66.667 0.00 0.00 0.00 4.02
3398 7162 2.680352 GCGTCCTCTCCCTCACCA 60.680 66.667 0.00 0.00 0.00 4.17
3399 7163 2.060980 GCGTCCTCTCCCTCACCAT 61.061 63.158 0.00 0.00 0.00 3.55
3400 7164 2.022240 GCGTCCTCTCCCTCACCATC 62.022 65.000 0.00 0.00 0.00 3.51
3401 7165 0.396417 CGTCCTCTCCCTCACCATCT 60.396 60.000 0.00 0.00 0.00 2.90
3402 7166 1.408969 GTCCTCTCCCTCACCATCTC 58.591 60.000 0.00 0.00 0.00 2.75
3403 7167 0.263172 TCCTCTCCCTCACCATCTCC 59.737 60.000 0.00 0.00 0.00 3.71
3404 7168 1.112315 CCTCTCCCTCACCATCTCCG 61.112 65.000 0.00 0.00 0.00 4.63
3405 7169 1.743321 CTCTCCCTCACCATCTCCGC 61.743 65.000 0.00 0.00 0.00 5.54
3406 7170 1.760086 CTCCCTCACCATCTCCGCT 60.760 63.158 0.00 0.00 0.00 5.52
3407 7171 1.743321 CTCCCTCACCATCTCCGCTC 61.743 65.000 0.00 0.00 0.00 5.03
3408 7172 2.415010 CCTCACCATCTCCGCTCG 59.585 66.667 0.00 0.00 0.00 5.03
3409 7173 2.418910 CCTCACCATCTCCGCTCGT 61.419 63.158 0.00 0.00 0.00 4.18
3410 7174 1.064946 CTCACCATCTCCGCTCGTC 59.935 63.158 0.00 0.00 0.00 4.20
3411 7175 2.278206 CACCATCTCCGCTCGTCG 60.278 66.667 0.00 0.00 38.08 5.12
3412 7176 4.194720 ACCATCTCCGCTCGTCGC 62.195 66.667 0.00 0.00 36.73 5.19
3413 7177 4.933064 CCATCTCCGCTCGTCGCC 62.933 72.222 0.00 0.00 36.73 5.54
3438 7202 4.363990 CTCGTGCGCCCACAGACT 62.364 66.667 4.18 0.00 42.17 3.24
3439 7203 3.865929 CTCGTGCGCCCACAGACTT 62.866 63.158 4.18 0.00 42.17 3.01
3440 7204 3.716006 CGTGCGCCCACAGACTTG 61.716 66.667 4.18 0.00 42.17 3.16
3441 7205 2.591715 GTGCGCCCACAGACTTGT 60.592 61.111 4.18 0.00 41.67 3.16
3442 7206 2.280797 TGCGCCCACAGACTTGTC 60.281 61.111 4.18 0.00 34.62 3.18
3443 7207 3.050275 GCGCCCACAGACTTGTCC 61.050 66.667 0.00 0.00 34.62 4.02
3444 7208 2.358737 CGCCCACAGACTTGTCCC 60.359 66.667 0.00 0.00 34.62 4.46
3445 7209 2.034221 GCCCACAGACTTGTCCCC 59.966 66.667 0.00 0.00 34.62 4.81
3446 7210 2.347490 CCCACAGACTTGTCCCCG 59.653 66.667 0.00 0.00 34.62 5.73
3447 7211 2.347490 CCACAGACTTGTCCCCGG 59.653 66.667 0.00 0.00 34.62 5.73
3448 7212 2.516888 CCACAGACTTGTCCCCGGT 61.517 63.158 0.00 0.00 34.62 5.28
3449 7213 1.450211 CACAGACTTGTCCCCGGTT 59.550 57.895 0.00 0.00 34.62 4.44
3450 7214 0.884704 CACAGACTTGTCCCCGGTTG 60.885 60.000 0.00 0.00 34.62 3.77
3451 7215 1.052124 ACAGACTTGTCCCCGGTTGA 61.052 55.000 0.00 0.00 29.46 3.18
3452 7216 0.107831 CAGACTTGTCCCCGGTTGAA 59.892 55.000 0.00 0.00 0.00 2.69
3453 7217 0.396811 AGACTTGTCCCCGGTTGAAG 59.603 55.000 0.00 0.00 0.00 3.02
3454 7218 1.228154 ACTTGTCCCCGGTTGAAGC 60.228 57.895 0.00 0.00 0.00 3.86
3455 7219 1.073199 CTTGTCCCCGGTTGAAGCT 59.927 57.895 0.00 0.00 0.00 3.74
3456 7220 0.537371 CTTGTCCCCGGTTGAAGCTT 60.537 55.000 0.00 0.00 0.00 3.74
3457 7221 0.106419 TTGTCCCCGGTTGAAGCTTT 60.106 50.000 0.00 0.00 0.00 3.51
3458 7222 0.106419 TGTCCCCGGTTGAAGCTTTT 60.106 50.000 0.00 0.00 0.00 2.27
3459 7223 0.596577 GTCCCCGGTTGAAGCTTTTC 59.403 55.000 0.00 0.00 0.00 2.29
3460 7224 0.538746 TCCCCGGTTGAAGCTTTTCC 60.539 55.000 0.00 2.94 0.00 3.13
3461 7225 0.539669 CCCCGGTTGAAGCTTTTCCT 60.540 55.000 0.00 0.00 0.00 3.36
3462 7226 1.271707 CCCCGGTTGAAGCTTTTCCTA 60.272 52.381 0.00 0.00 0.00 2.94
3463 7227 1.810755 CCCGGTTGAAGCTTTTCCTAC 59.189 52.381 0.00 0.00 0.00 3.18
3464 7228 1.463444 CCGGTTGAAGCTTTTCCTACG 59.537 52.381 0.00 1.39 0.00 3.51
3465 7229 1.136057 CGGTTGAAGCTTTTCCTACGC 60.136 52.381 0.00 0.00 0.00 4.42
3466 7230 1.199327 GGTTGAAGCTTTTCCTACGCC 59.801 52.381 0.00 0.00 0.00 5.68
3467 7231 1.199327 GTTGAAGCTTTTCCTACGCCC 59.801 52.381 0.00 0.00 0.00 6.13
3468 7232 0.672401 TGAAGCTTTTCCTACGCCCG 60.672 55.000 0.00 0.00 0.00 6.13
3469 7233 0.672711 GAAGCTTTTCCTACGCCCGT 60.673 55.000 0.00 0.00 0.00 5.28
3470 7234 0.250597 AAGCTTTTCCTACGCCCGTT 60.251 50.000 0.00 0.00 0.00 4.44
3471 7235 0.953960 AGCTTTTCCTACGCCCGTTG 60.954 55.000 0.00 0.00 0.00 4.10
3472 7236 0.952010 GCTTTTCCTACGCCCGTTGA 60.952 55.000 0.00 0.00 0.00 3.18
3473 7237 1.515081 CTTTTCCTACGCCCGTTGAA 58.485 50.000 0.00 0.31 0.00 2.69
3474 7238 1.463444 CTTTTCCTACGCCCGTTGAAG 59.537 52.381 0.00 0.00 0.00 3.02
3475 7239 0.952010 TTTCCTACGCCCGTTGAAGC 60.952 55.000 0.00 0.00 0.00 3.86
3476 7240 1.823169 TTCCTACGCCCGTTGAAGCT 61.823 55.000 0.00 0.00 0.00 3.74
3477 7241 1.375523 CCTACGCCCGTTGAAGCTT 60.376 57.895 0.00 0.00 0.00 3.74
3478 7242 0.953960 CCTACGCCCGTTGAAGCTTT 60.954 55.000 0.00 0.00 0.00 3.51
3479 7243 0.872388 CTACGCCCGTTGAAGCTTTT 59.128 50.000 0.00 0.00 0.00 2.27
3480 7244 1.265905 CTACGCCCGTTGAAGCTTTTT 59.734 47.619 0.00 0.00 0.00 1.94
3500 7264 4.918810 TTTCCTTGACTGAAGCTTTTCC 57.081 40.909 0.00 0.00 0.00 3.13
3501 7265 3.576078 TCCTTGACTGAAGCTTTTCCA 57.424 42.857 0.00 0.00 0.00 3.53
3502 7266 4.104383 TCCTTGACTGAAGCTTTTCCAT 57.896 40.909 0.00 0.00 0.00 3.41
3503 7267 3.822735 TCCTTGACTGAAGCTTTTCCATG 59.177 43.478 0.00 0.00 0.00 3.66
3504 7268 3.057033 CCTTGACTGAAGCTTTTCCATGG 60.057 47.826 4.97 4.97 0.00 3.66
3505 7269 2.517959 TGACTGAAGCTTTTCCATGGG 58.482 47.619 13.02 0.00 0.00 4.00
3506 7270 1.821136 GACTGAAGCTTTTCCATGGGG 59.179 52.381 13.02 1.28 0.00 4.96
3507 7271 1.188863 CTGAAGCTTTTCCATGGGGG 58.811 55.000 13.02 0.91 38.37 5.40
3508 7272 0.486879 TGAAGCTTTTCCATGGGGGT 59.513 50.000 13.02 2.97 38.11 4.95
3509 7273 1.132881 TGAAGCTTTTCCATGGGGGTT 60.133 47.619 13.02 11.36 38.11 4.11
3510 7274 1.276138 GAAGCTTTTCCATGGGGGTTG 59.724 52.381 13.02 0.14 38.11 3.77
3511 7275 0.486879 AGCTTTTCCATGGGGGTTGA 59.513 50.000 13.02 0.00 38.11 3.18
3512 7276 1.132881 AGCTTTTCCATGGGGGTTGAA 60.133 47.619 13.02 0.00 38.11 2.69
3513 7277 1.276138 GCTTTTCCATGGGGGTTGAAG 59.724 52.381 13.02 8.31 38.11 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.540314 AAAACTTCATGGTGCTTTGCA 57.460 38.095 0.00 0.00 35.60 4.08
3 4 5.388682 CGCATTAAAACTTCATGGTGCTTTG 60.389 40.000 0.00 0.00 0.00 2.77
4 5 4.685628 CGCATTAAAACTTCATGGTGCTTT 59.314 37.500 0.00 0.00 0.00 3.51
6 7 3.255642 ACGCATTAAAACTTCATGGTGCT 59.744 39.130 0.00 0.00 0.00 4.40
7 8 3.574614 ACGCATTAAAACTTCATGGTGC 58.425 40.909 0.00 0.00 0.00 5.01
8 9 5.694816 TGTACGCATTAAAACTTCATGGTG 58.305 37.500 0.00 0.00 0.00 4.17
9 10 5.106317 CCTGTACGCATTAAAACTTCATGGT 60.106 40.000 0.00 0.00 0.00 3.55
10 11 5.123186 TCCTGTACGCATTAAAACTTCATGG 59.877 40.000 0.00 0.00 0.00 3.66
13 14 5.178623 CACTCCTGTACGCATTAAAACTTCA 59.821 40.000 0.00 0.00 0.00 3.02
14 15 5.618561 CACTCCTGTACGCATTAAAACTTC 58.381 41.667 0.00 0.00 0.00 3.01
15 16 4.083484 GCACTCCTGTACGCATTAAAACTT 60.083 41.667 0.00 0.00 0.00 2.66
16 17 3.435671 GCACTCCTGTACGCATTAAAACT 59.564 43.478 0.00 0.00 0.00 2.66
17 18 3.187637 TGCACTCCTGTACGCATTAAAAC 59.812 43.478 0.00 0.00 0.00 2.43
18 19 3.403968 TGCACTCCTGTACGCATTAAAA 58.596 40.909 0.00 0.00 0.00 1.52
19 20 3.000041 CTGCACTCCTGTACGCATTAAA 59.000 45.455 0.00 0.00 33.15 1.52
20 21 2.616960 CTGCACTCCTGTACGCATTAA 58.383 47.619 0.00 0.00 33.15 1.40
21 22 1.739035 GCTGCACTCCTGTACGCATTA 60.739 52.381 0.00 0.00 33.15 1.90
22 23 1.021390 GCTGCACTCCTGTACGCATT 61.021 55.000 0.00 0.00 33.15 3.56
23 24 1.448540 GCTGCACTCCTGTACGCAT 60.449 57.895 0.00 0.00 33.15 4.73
24 25 2.048222 GCTGCACTCCTGTACGCA 60.048 61.111 0.00 0.00 0.00 5.24
25 26 1.667830 TTGCTGCACTCCTGTACGC 60.668 57.895 0.00 0.00 0.00 4.42
26 27 0.319900 AGTTGCTGCACTCCTGTACG 60.320 55.000 0.00 0.00 0.00 3.67
27 28 1.151668 CAGTTGCTGCACTCCTGTAC 58.848 55.000 0.00 0.00 0.00 2.90
28 29 0.035317 CCAGTTGCTGCACTCCTGTA 59.965 55.000 16.97 0.00 0.00 2.74
29 30 1.228063 CCAGTTGCTGCACTCCTGT 60.228 57.895 16.97 0.00 0.00 4.00
30 31 1.228063 ACCAGTTGCTGCACTCCTG 60.228 57.895 0.00 8.90 0.00 3.86
31 32 1.228063 CACCAGTTGCTGCACTCCT 60.228 57.895 0.00 0.00 0.00 3.69
32 33 3.348236 CACCAGTTGCTGCACTCC 58.652 61.111 0.00 0.00 0.00 3.85
46 47 2.808906 AAAGTAGGAATGGGAGCACC 57.191 50.000 0.00 0.00 40.81 5.01
47 48 3.628032 GCTTAAAGTAGGAATGGGAGCAC 59.372 47.826 0.00 0.00 0.00 4.40
48 49 3.371595 GGCTTAAAGTAGGAATGGGAGCA 60.372 47.826 0.00 0.00 0.00 4.26
49 50 3.215151 GGCTTAAAGTAGGAATGGGAGC 58.785 50.000 0.00 0.00 0.00 4.70
50 51 3.134081 TCGGCTTAAAGTAGGAATGGGAG 59.866 47.826 0.00 0.00 0.00 4.30
51 52 3.109151 TCGGCTTAAAGTAGGAATGGGA 58.891 45.455 0.00 0.00 0.00 4.37
52 53 3.203716 GTCGGCTTAAAGTAGGAATGGG 58.796 50.000 0.00 0.00 0.00 4.00
53 54 3.203716 GGTCGGCTTAAAGTAGGAATGG 58.796 50.000 0.00 0.00 0.00 3.16
54 55 2.864343 CGGTCGGCTTAAAGTAGGAATG 59.136 50.000 0.00 0.00 0.00 2.67
55 56 2.498885 ACGGTCGGCTTAAAGTAGGAAT 59.501 45.455 0.00 0.00 0.00 3.01
56 57 1.895131 ACGGTCGGCTTAAAGTAGGAA 59.105 47.619 0.00 0.00 0.00 3.36
57 58 1.474077 GACGGTCGGCTTAAAGTAGGA 59.526 52.381 0.00 0.00 0.00 2.94
58 59 1.203052 TGACGGTCGGCTTAAAGTAGG 59.797 52.381 3.34 0.00 0.00 3.18
59 60 2.257034 GTGACGGTCGGCTTAAAGTAG 58.743 52.381 3.34 0.00 0.00 2.57
60 61 1.612950 TGTGACGGTCGGCTTAAAGTA 59.387 47.619 3.34 0.00 0.00 2.24
61 62 0.390124 TGTGACGGTCGGCTTAAAGT 59.610 50.000 3.34 0.00 0.00 2.66
62 63 0.788391 GTGTGACGGTCGGCTTAAAG 59.212 55.000 3.34 0.00 0.00 1.85
63 64 0.104487 TGTGTGACGGTCGGCTTAAA 59.896 50.000 3.34 0.00 0.00 1.52
64 65 0.319211 CTGTGTGACGGTCGGCTTAA 60.319 55.000 3.34 0.00 0.00 1.85
65 66 1.287815 CTGTGTGACGGTCGGCTTA 59.712 57.895 3.34 0.00 0.00 3.09
66 67 2.029073 CTGTGTGACGGTCGGCTT 59.971 61.111 3.34 0.00 0.00 4.35
67 68 3.991051 CCTGTGTGACGGTCGGCT 61.991 66.667 3.34 0.00 0.00 5.52
68 69 3.916392 CTCCTGTGTGACGGTCGGC 62.916 68.421 3.34 0.00 0.00 5.54
69 70 2.083835 AACTCCTGTGTGACGGTCGG 62.084 60.000 3.34 0.00 0.00 4.79
70 71 0.249322 AAACTCCTGTGTGACGGTCG 60.249 55.000 3.34 0.00 0.00 4.79
71 72 1.217882 CAAACTCCTGTGTGACGGTC 58.782 55.000 0.00 0.00 33.29 4.79
72 73 0.179056 CCAAACTCCTGTGTGACGGT 60.179 55.000 0.00 0.00 33.29 4.83
73 74 0.105964 TCCAAACTCCTGTGTGACGG 59.894 55.000 0.00 0.00 33.29 4.79
74 75 1.217882 GTCCAAACTCCTGTGTGACG 58.782 55.000 0.00 0.00 33.29 4.35
75 76 2.325583 TGTCCAAACTCCTGTGTGAC 57.674 50.000 0.00 0.00 33.29 3.67
76 77 2.026729 TGTTGTCCAAACTCCTGTGTGA 60.027 45.455 0.00 0.00 33.29 3.58
77 78 2.364632 TGTTGTCCAAACTCCTGTGTG 58.635 47.619 0.00 0.00 0.00 3.82
78 79 2.799126 TGTTGTCCAAACTCCTGTGT 57.201 45.000 0.00 0.00 0.00 3.72
79 80 3.016736 ACTTGTTGTCCAAACTCCTGTG 58.983 45.455 0.00 0.00 31.20 3.66
80 81 3.016736 CACTTGTTGTCCAAACTCCTGT 58.983 45.455 0.00 0.00 31.20 4.00
81 82 3.278574 TCACTTGTTGTCCAAACTCCTG 58.721 45.455 0.00 0.00 31.20 3.86
82 83 3.644966 TCACTTGTTGTCCAAACTCCT 57.355 42.857 0.00 0.00 31.20 3.69
83 84 4.137543 AGATCACTTGTTGTCCAAACTCC 58.862 43.478 0.00 0.00 31.20 3.85
84 85 5.758296 TGTAGATCACTTGTTGTCCAAACTC 59.242 40.000 0.00 0.00 31.20 3.01
85 86 5.680619 TGTAGATCACTTGTTGTCCAAACT 58.319 37.500 0.00 0.00 31.20 2.66
86 87 6.373779 CATGTAGATCACTTGTTGTCCAAAC 58.626 40.000 0.00 0.00 31.20 2.93
87 88 5.048782 GCATGTAGATCACTTGTTGTCCAAA 60.049 40.000 0.00 0.00 35.30 3.28
88 89 4.455533 GCATGTAGATCACTTGTTGTCCAA 59.544 41.667 0.00 0.00 35.30 3.53
89 90 4.002982 GCATGTAGATCACTTGTTGTCCA 58.997 43.478 0.00 0.00 35.30 4.02
90 91 4.256920 AGCATGTAGATCACTTGTTGTCC 58.743 43.478 0.00 0.00 35.30 4.02
91 92 6.102663 AGTAGCATGTAGATCACTTGTTGTC 58.897 40.000 0.00 0.00 35.30 3.18
92 93 6.042638 AGTAGCATGTAGATCACTTGTTGT 57.957 37.500 0.00 0.00 35.30 3.32
93 94 5.521735 GGAGTAGCATGTAGATCACTTGTTG 59.478 44.000 0.00 0.00 35.30 3.33
94 95 5.395768 GGGAGTAGCATGTAGATCACTTGTT 60.396 44.000 0.00 1.38 35.30 2.83
95 96 4.100189 GGGAGTAGCATGTAGATCACTTGT 59.900 45.833 0.00 0.00 35.30 3.16
96 97 4.343526 AGGGAGTAGCATGTAGATCACTTG 59.656 45.833 0.00 1.63 35.82 3.16
97 98 4.551671 AGGGAGTAGCATGTAGATCACTT 58.448 43.478 0.00 0.00 0.00 3.16
98 99 4.148838 GAGGGAGTAGCATGTAGATCACT 58.851 47.826 0.00 0.00 0.00 3.41
99 100 3.257127 GGAGGGAGTAGCATGTAGATCAC 59.743 52.174 0.00 0.00 0.00 3.06
100 101 3.501349 GGAGGGAGTAGCATGTAGATCA 58.499 50.000 0.00 0.00 0.00 2.92
101 102 2.490115 CGGAGGGAGTAGCATGTAGATC 59.510 54.545 0.00 0.00 0.00 2.75
102 103 2.158445 ACGGAGGGAGTAGCATGTAGAT 60.158 50.000 0.00 0.00 0.00 1.98
103 104 1.214673 ACGGAGGGAGTAGCATGTAGA 59.785 52.381 0.00 0.00 0.00 2.59
104 105 1.609555 GACGGAGGGAGTAGCATGTAG 59.390 57.143 0.00 0.00 0.00 2.74
105 106 1.214673 AGACGGAGGGAGTAGCATGTA 59.785 52.381 0.00 0.00 0.00 2.29
106 107 0.033011 AGACGGAGGGAGTAGCATGT 60.033 55.000 0.00 0.00 0.00 3.21
107 108 0.671251 GAGACGGAGGGAGTAGCATG 59.329 60.000 0.00 0.00 0.00 4.06
108 109 0.259065 TGAGACGGAGGGAGTAGCAT 59.741 55.000 0.00 0.00 0.00 3.79
109 110 0.039180 TTGAGACGGAGGGAGTAGCA 59.961 55.000 0.00 0.00 0.00 3.49
110 111 1.183549 TTTGAGACGGAGGGAGTAGC 58.816 55.000 0.00 0.00 0.00 3.58
111 112 5.593679 TTATTTTGAGACGGAGGGAGTAG 57.406 43.478 0.00 0.00 0.00 2.57
112 113 6.155565 TCATTTATTTTGAGACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
113 114 4.903045 TTTATTTTGAGACGGAGGGAGT 57.097 40.909 0.00 0.00 0.00 3.85
114 115 5.294552 GTCATTTATTTTGAGACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
115 116 5.045869 AGTCATTTATTTTGAGACGGAGGGA 60.046 40.000 0.00 0.00 34.56 4.20
116 117 5.186198 AGTCATTTATTTTGAGACGGAGGG 58.814 41.667 0.00 0.00 34.56 4.30
117 118 5.874810 TGAGTCATTTATTTTGAGACGGAGG 59.125 40.000 0.00 0.00 34.56 4.30
118 119 6.591834 AGTGAGTCATTTATTTTGAGACGGAG 59.408 38.462 0.00 0.00 34.56 4.63
119 120 6.464222 AGTGAGTCATTTATTTTGAGACGGA 58.536 36.000 0.00 0.00 34.56 4.69
120 121 6.727824 AGTGAGTCATTTATTTTGAGACGG 57.272 37.500 0.00 0.00 34.56 4.79
156 157 9.871238 CTCAACTTTGAAGTAGCCTTAGTATAA 57.129 33.333 0.00 0.00 38.57 0.98
157 158 7.980099 GCTCAACTTTGAAGTAGCCTTAGTATA 59.020 37.037 7.20 0.00 38.57 1.47
158 159 6.819146 GCTCAACTTTGAAGTAGCCTTAGTAT 59.181 38.462 7.20 0.00 38.57 2.12
159 160 6.164176 GCTCAACTTTGAAGTAGCCTTAGTA 58.836 40.000 7.20 0.00 38.57 1.82
160 161 4.998033 GCTCAACTTTGAAGTAGCCTTAGT 59.002 41.667 7.20 0.00 38.57 2.24
161 162 4.092091 CGCTCAACTTTGAAGTAGCCTTAG 59.908 45.833 11.18 0.00 37.33 2.18
162 163 3.994392 CGCTCAACTTTGAAGTAGCCTTA 59.006 43.478 11.18 0.00 37.33 2.69
163 164 2.808543 CGCTCAACTTTGAAGTAGCCTT 59.191 45.455 11.18 0.00 37.33 4.35
164 165 2.417719 CGCTCAACTTTGAAGTAGCCT 58.582 47.619 11.18 0.00 37.33 4.58
165 166 1.464997 CCGCTCAACTTTGAAGTAGCC 59.535 52.381 11.18 0.00 37.33 3.93
166 167 2.096218 CACCGCTCAACTTTGAAGTAGC 60.096 50.000 8.07 8.07 38.57 3.58
167 168 2.480419 CCACCGCTCAACTTTGAAGTAG 59.520 50.000 0.00 0.00 38.57 2.57
168 169 2.489971 CCACCGCTCAACTTTGAAGTA 58.510 47.619 0.00 0.00 38.57 2.24
169 170 1.308998 CCACCGCTCAACTTTGAAGT 58.691 50.000 0.00 0.00 42.04 3.01
170 171 0.040067 GCCACCGCTCAACTTTGAAG 60.040 55.000 0.00 0.00 36.64 3.02
171 172 0.465460 AGCCACCGCTCAACTTTGAA 60.465 50.000 0.00 0.00 43.95 2.69
172 173 1.148273 AGCCACCGCTCAACTTTGA 59.852 52.632 0.00 0.00 43.95 2.69
173 174 1.283793 CAGCCACCGCTCAACTTTG 59.716 57.895 0.00 0.00 43.95 2.77
174 175 1.152963 ACAGCCACCGCTCAACTTT 60.153 52.632 0.00 0.00 43.95 2.66
175 176 1.598130 GACAGCCACCGCTCAACTT 60.598 57.895 0.00 0.00 43.95 2.66
176 177 2.031163 GACAGCCACCGCTCAACT 59.969 61.111 0.00 0.00 43.95 3.16
177 178 3.414700 CGACAGCCACCGCTCAAC 61.415 66.667 0.00 0.00 43.95 3.18
183 184 2.874010 CTACTCAGCGACAGCCACCG 62.874 65.000 0.00 0.00 46.67 4.94
184 185 1.153745 CTACTCAGCGACAGCCACC 60.154 63.158 0.00 0.00 46.67 4.61
185 186 1.153745 CCTACTCAGCGACAGCCAC 60.154 63.158 0.00 0.00 46.67 5.01
272 276 1.421382 ACATGGCACGTACGTAACAC 58.579 50.000 22.34 11.73 0.00 3.32
275 279 2.732500 CTGAAACATGGCACGTACGTAA 59.267 45.455 22.34 10.31 0.00 3.18
276 280 2.030096 TCTGAAACATGGCACGTACGTA 60.030 45.455 22.34 6.15 0.00 3.57
277 281 1.144969 CTGAAACATGGCACGTACGT 58.855 50.000 16.72 16.72 0.00 3.57
278 282 1.126113 GTCTGAAACATGGCACGTACG 59.874 52.381 15.01 15.01 0.00 3.67
300 304 0.451383 TTTGACTGCTGTGTGTGTGC 59.549 50.000 0.00 0.00 0.00 4.57
301 305 1.739466 ACTTTGACTGCTGTGTGTGTG 59.261 47.619 0.00 0.00 0.00 3.82
303 307 2.009051 TCACTTTGACTGCTGTGTGTG 58.991 47.619 0.00 5.04 0.00 3.82
304 308 2.401583 TCACTTTGACTGCTGTGTGT 57.598 45.000 0.00 0.00 0.00 3.72
305 309 2.096565 CGATCACTTTGACTGCTGTGTG 60.097 50.000 0.00 3.30 0.00 3.82
308 312 2.820059 TCGATCACTTTGACTGCTGT 57.180 45.000 0.00 0.00 0.00 4.40
329 353 9.967451 TCAACAAATATATGGTACTCCTTCAAA 57.033 29.630 0.00 0.00 34.23 2.69
432 952 6.124340 TGTACGGATGGAGTTGTCTCTTATA 58.876 40.000 0.00 0.00 40.29 0.98
433 953 4.954202 TGTACGGATGGAGTTGTCTCTTAT 59.046 41.667 0.00 0.00 40.29 1.73
456 976 5.104610 AGCCAGTGTTGATGAACTCTATGAT 60.105 40.000 0.00 0.00 34.79 2.45
486 1010 5.902760 TGTACCTAACCTAACCTAAGTGGA 58.097 41.667 0.00 0.00 39.71 4.02
523 1083 6.708285 TCATGATAGGCTGATAGTCTACGTA 58.292 40.000 0.00 0.00 34.91 3.57
638 1637 1.736645 CACCGGATCGACACACACC 60.737 63.158 9.46 0.00 0.00 4.16
660 1885 1.772063 GAGCGCCACAACTTCGTGTT 61.772 55.000 2.29 0.00 39.92 3.32
702 1927 6.521162 TCAGCGTATGCCTTTCATCTATAAA 58.479 36.000 2.51 0.00 44.31 1.40
705 1930 4.607293 TCAGCGTATGCCTTTCATCTAT 57.393 40.909 2.51 0.00 44.31 1.98
707 1932 2.988010 TCAGCGTATGCCTTTCATCT 57.012 45.000 2.51 0.00 44.31 2.90
709 1934 2.498167 GGATCAGCGTATGCCTTTCAT 58.502 47.619 2.51 0.00 44.31 2.57
710 1935 1.806247 CGGATCAGCGTATGCCTTTCA 60.806 52.381 2.51 0.00 44.31 2.69
712 1937 0.464036 TCGGATCAGCGTATGCCTTT 59.536 50.000 2.51 0.00 44.31 3.11
713 1938 0.681733 ATCGGATCAGCGTATGCCTT 59.318 50.000 2.51 0.00 44.31 4.35
714 1939 0.681733 AATCGGATCAGCGTATGCCT 59.318 50.000 2.51 0.00 44.31 4.75
715 1940 1.993370 GTAATCGGATCAGCGTATGCC 59.007 52.381 2.51 0.00 44.31 4.40
716 1941 2.947852 AGTAATCGGATCAGCGTATGC 58.052 47.619 0.00 0.00 43.24 3.14
718 1943 5.335740 CCAGTTAGTAATCGGATCAGCGTAT 60.336 44.000 0.00 0.00 0.00 3.06
719 1944 4.023450 CCAGTTAGTAATCGGATCAGCGTA 60.023 45.833 0.00 0.00 0.00 4.42
807 3879 7.718272 TTACGACACAGCTTAACAATTAGTT 57.282 32.000 0.00 0.00 44.27 2.24
809 3881 8.186178 AGATTACGACACAGCTTAACAATTAG 57.814 34.615 0.00 0.00 0.00 1.73
810 3882 7.008901 CGAGATTACGACACAGCTTAACAATTA 59.991 37.037 0.00 0.00 35.09 1.40
812 3884 5.288712 CGAGATTACGACACAGCTTAACAAT 59.711 40.000 0.00 0.00 35.09 2.71
814 3886 4.163552 CGAGATTACGACACAGCTTAACA 58.836 43.478 0.00 0.00 35.09 2.41
815 3887 4.164294 ACGAGATTACGACACAGCTTAAC 58.836 43.478 0.00 0.00 37.03 2.01
842 3918 2.908015 GGCAATGACCTAGCCGGA 59.092 61.111 5.05 0.00 38.86 5.14
934 4046 4.959839 TCCCTATCTGTATGTGTGCTTGTA 59.040 41.667 0.00 0.00 0.00 2.41
1042 4170 5.045359 TCTCCAGTTTCTCCATGTTGATCAT 60.045 40.000 0.00 0.00 37.22 2.45
1059 4187 1.304952 CCTCTCCTCGGTCTCCAGT 59.695 63.158 0.00 0.00 0.00 4.00
1101 4229 2.811317 CAGTTCTCGCAGGCGTCC 60.811 66.667 13.83 0.63 40.74 4.79
1138 4266 9.337091 GCTATAAGAGAATTCTACTTCGTCATC 57.663 37.037 8.25 0.00 31.96 2.92
1141 4269 8.561212 TCTGCTATAAGAGAATTCTACTTCGTC 58.439 37.037 8.25 0.00 31.96 4.20
1142 4270 8.453238 TCTGCTATAAGAGAATTCTACTTCGT 57.547 34.615 8.25 8.64 31.96 3.85
1201 4354 7.671398 ACCTTCAGTTAATCATGTCCAGAATTT 59.329 33.333 0.00 0.00 0.00 1.82
1224 4390 3.055167 TCAACAGCTGCACACATATACCT 60.055 43.478 15.27 0.00 0.00 3.08
1254 4466 0.529337 CCATCAGCTCGTGCGAGATT 60.529 55.000 23.57 9.11 44.53 2.40
1323 4535 0.600255 CCGCGAACTCCTTGAACTGT 60.600 55.000 8.23 0.00 0.00 3.55
1485 4701 8.289440 TCATTAATTAAGTAATCAGGCGTACG 57.711 34.615 11.84 11.84 0.00 3.67
1487 4703 9.826574 AGTTCATTAATTAAGTAATCAGGCGTA 57.173 29.630 5.22 0.00 0.00 4.42
1488 4704 8.732746 AGTTCATTAATTAAGTAATCAGGCGT 57.267 30.769 5.22 0.00 0.00 5.68
1509 4729 5.505985 CCAGTGATCTAAGTAGCCGTAGTTC 60.506 48.000 0.00 0.00 0.00 3.01
1532 4752 4.927425 TCGAAGCCGATGTTATTATTAGCC 59.073 41.667 0.00 0.00 40.30 3.93
1548 4909 5.004535 CGACTAGTTAATTTCTGTCGAAGCC 59.995 44.000 18.24 0.00 46.58 4.35
1565 4926 2.826128 TGGAGTTGAATCTGCGACTAGT 59.174 45.455 0.00 0.00 32.69 2.57
1592 4953 7.637552 GCAAAAAGCAAGCAAGTAGCAAAAAC 61.638 38.462 0.00 0.00 45.05 2.43
1701 5359 8.985922 AGCAATGATACTATATCTGCTGGATTA 58.014 33.333 10.24 0.00 37.28 1.75
1720 5378 2.487805 GGTGATATCCTGGCAGCAATGA 60.488 50.000 9.56 0.70 0.00 2.57
1723 5381 0.918258 TGGTGATATCCTGGCAGCAA 59.082 50.000 9.56 0.00 37.13 3.91
1728 5401 5.247110 TCTTATCTTCTGGTGATATCCTGGC 59.753 44.000 0.00 0.00 0.00 4.85
1730 5403 7.333921 GCAATCTTATCTTCTGGTGATATCCTG 59.666 40.741 0.00 0.00 0.00 3.86
1740 5413 3.317430 GCCCAAGCAATCTTATCTTCTGG 59.683 47.826 0.00 0.00 39.53 3.86
1778 5452 6.798959 GTCGTGTTGGTTACTACTGTACTTAG 59.201 42.308 0.00 0.00 0.00 2.18
1783 5457 4.022935 CCAGTCGTGTTGGTTACTACTGTA 60.023 45.833 0.00 0.00 34.09 2.74
1865 5616 0.788391 CTTGCCTTAACGACGACACC 59.212 55.000 0.00 0.00 0.00 4.16
1877 5628 3.441572 CGAATTCCTTCATCACTTGCCTT 59.558 43.478 0.00 0.00 0.00 4.35
1949 5701 1.763770 CTGCTCCAGACCCAGGTTT 59.236 57.895 0.00 0.00 32.44 3.27
2111 5863 3.374402 CCGCTGACCTGGTCGTCT 61.374 66.667 21.15 0.00 34.95 4.18
2642 6406 2.037121 TGCTCGGACAAGAATCTGTGAA 59.963 45.455 0.00 0.00 0.00 3.18
2690 6454 3.254654 CACCGGCGCGTATCACTG 61.255 66.667 8.43 0.00 0.00 3.66
2703 6467 2.272447 AAATTTGGACCCGGCACCG 61.272 57.895 1.02 1.02 39.44 4.94
2704 6468 1.291906 CAAATTTGGACCCGGCACC 59.708 57.895 10.49 1.33 0.00 5.01
2705 6469 4.985845 CAAATTTGGACCCGGCAC 57.014 55.556 10.49 0.00 0.00 5.01
3284 7048 4.394712 CTGGGGCAGGGACACGTC 62.395 72.222 0.00 0.00 0.00 4.34
3290 7054 4.346889 TAGTGGCTGGGGCAGGGA 62.347 66.667 0.00 0.00 39.19 4.20
3291 7055 4.115199 GTAGTGGCTGGGGCAGGG 62.115 72.222 0.00 0.00 39.19 4.45
3292 7056 4.473520 CGTAGTGGCTGGGGCAGG 62.474 72.222 0.00 0.00 39.19 4.85
3293 7057 3.706373 ACGTAGTGGCTGGGGCAG 61.706 66.667 0.00 0.00 42.51 4.85
3310 7074 1.227409 TCTCGAAGGTGCAAACGCA 60.227 52.632 0.00 0.00 36.95 5.24
3311 7075 1.204312 GTCTCGAAGGTGCAAACGC 59.796 57.895 0.00 0.00 0.00 4.84
3312 7076 1.213094 ACGTCTCGAAGGTGCAAACG 61.213 55.000 0.00 0.00 35.00 3.60
3313 7077 0.232303 CACGTCTCGAAGGTGCAAAC 59.768 55.000 0.00 0.00 36.99 2.93
3314 7078 0.103390 TCACGTCTCGAAGGTGCAAA 59.897 50.000 12.51 0.00 42.27 3.68
3315 7079 0.103390 TTCACGTCTCGAAGGTGCAA 59.897 50.000 12.51 7.67 42.27 4.08
3316 7080 0.103390 TTTCACGTCTCGAAGGTGCA 59.897 50.000 12.51 0.00 42.27 4.57
3317 7081 0.784778 CTTTCACGTCTCGAAGGTGC 59.215 55.000 12.51 0.00 42.27 5.01
3318 7082 0.784778 GCTTTCACGTCTCGAAGGTG 59.215 55.000 11.62 11.62 43.57 4.00
3319 7083 0.387929 TGCTTTCACGTCTCGAAGGT 59.612 50.000 0.00 0.00 0.00 3.50
3320 7084 0.784778 GTGCTTTCACGTCTCGAAGG 59.215 55.000 0.00 0.00 32.98 3.46
3321 7085 0.784778 GGTGCTTTCACGTCTCGAAG 59.215 55.000 0.00 0.00 44.03 3.79
3322 7086 0.599204 GGGTGCTTTCACGTCTCGAA 60.599 55.000 0.00 0.00 44.03 3.71
3323 7087 1.006571 GGGTGCTTTCACGTCTCGA 60.007 57.895 0.00 0.00 44.03 4.04
3324 7088 1.300620 TGGGTGCTTTCACGTCTCG 60.301 57.895 0.00 0.00 44.03 4.04
3325 7089 2.235546 GTGGGTGCTTTCACGTCTC 58.764 57.895 0.00 0.00 44.03 3.36
3326 7090 4.456806 GTGGGTGCTTTCACGTCT 57.543 55.556 0.00 0.00 44.03 4.18
3330 7094 1.227853 AGGACGTGGGTGCTTTCAC 60.228 57.895 0.00 0.00 42.84 3.18
3331 7095 1.070786 GAGGACGTGGGTGCTTTCA 59.929 57.895 0.00 0.00 45.69 2.69
3332 7096 0.670854 GAGAGGACGTGGGTGCTTTC 60.671 60.000 0.00 0.00 45.69 2.62
3333 7097 1.371558 GAGAGGACGTGGGTGCTTT 59.628 57.895 0.00 0.00 45.69 3.51
3334 7098 2.584391 GGAGAGGACGTGGGTGCTT 61.584 63.158 0.00 0.00 45.69 3.91
3336 7100 4.083862 GGGAGAGGACGTGGGTGC 62.084 72.222 0.00 0.00 34.21 5.01
3337 7101 2.283966 AGGGAGAGGACGTGGGTG 60.284 66.667 0.00 0.00 0.00 4.61
3338 7102 2.037527 GAGGGAGAGGACGTGGGT 59.962 66.667 0.00 0.00 0.00 4.51
3339 7103 3.141488 CGAGGGAGAGGACGTGGG 61.141 72.222 0.00 0.00 0.00 4.61
3340 7104 3.827898 GCGAGGGAGAGGACGTGG 61.828 72.222 0.00 0.00 0.00 4.94
3341 7105 2.752238 AGCGAGGGAGAGGACGTG 60.752 66.667 0.00 0.00 0.00 4.49
3342 7106 2.752238 CAGCGAGGGAGAGGACGT 60.752 66.667 0.00 0.00 0.00 4.34
3343 7107 2.752238 ACAGCGAGGGAGAGGACG 60.752 66.667 0.00 0.00 0.00 4.79
3344 7108 2.766400 CGACAGCGAGGGAGAGGAC 61.766 68.421 0.00 0.00 40.82 3.85
3345 7109 2.438614 CGACAGCGAGGGAGAGGA 60.439 66.667 0.00 0.00 40.82 3.71
3346 7110 4.200283 GCGACAGCGAGGGAGAGG 62.200 72.222 0.00 0.00 40.82 3.69
3347 7111 4.200283 GGCGACAGCGAGGGAGAG 62.200 72.222 0.00 0.00 46.35 3.20
3353 7117 4.862092 ATGAGCGGCGACAGCGAG 62.862 66.667 12.98 0.00 46.35 5.03
3354 7118 4.854784 GATGAGCGGCGACAGCGA 62.855 66.667 12.98 0.00 46.35 4.93
3372 7136 4.385405 AGAGGACGCTGGTGCTGC 62.385 66.667 0.00 0.00 45.69 5.25
3373 7137 2.125753 GAGAGGACGCTGGTGCTG 60.126 66.667 0.00 0.00 45.69 4.41
3375 7139 4.459089 GGGAGAGGACGCTGGTGC 62.459 72.222 0.00 0.00 34.21 5.01
3376 7140 2.681778 AGGGAGAGGACGCTGGTG 60.682 66.667 0.00 0.00 0.00 4.17
3377 7141 2.363147 GAGGGAGAGGACGCTGGT 60.363 66.667 0.00 0.00 33.36 4.00
3378 7142 2.363018 TGAGGGAGAGGACGCTGG 60.363 66.667 0.00 0.00 33.36 4.85
3379 7143 2.716017 GGTGAGGGAGAGGACGCTG 61.716 68.421 0.00 0.00 33.36 5.18
3380 7144 2.363147 GGTGAGGGAGAGGACGCT 60.363 66.667 0.00 0.00 35.82 5.07
3381 7145 2.022240 GATGGTGAGGGAGAGGACGC 62.022 65.000 0.00 0.00 0.00 5.19
3382 7146 0.396417 AGATGGTGAGGGAGAGGACG 60.396 60.000 0.00 0.00 0.00 4.79
3383 7147 1.408969 GAGATGGTGAGGGAGAGGAC 58.591 60.000 0.00 0.00 0.00 3.85
3384 7148 0.263172 GGAGATGGTGAGGGAGAGGA 59.737 60.000 0.00 0.00 0.00 3.71
3385 7149 1.112315 CGGAGATGGTGAGGGAGAGG 61.112 65.000 0.00 0.00 0.00 3.69
3386 7150 1.743321 GCGGAGATGGTGAGGGAGAG 61.743 65.000 0.00 0.00 0.00 3.20
3387 7151 1.758514 GCGGAGATGGTGAGGGAGA 60.759 63.158 0.00 0.00 0.00 3.71
3388 7152 1.743321 GAGCGGAGATGGTGAGGGAG 61.743 65.000 0.00 0.00 0.00 4.30
3389 7153 1.758514 GAGCGGAGATGGTGAGGGA 60.759 63.158 0.00 0.00 0.00 4.20
3390 7154 2.818132 GAGCGGAGATGGTGAGGG 59.182 66.667 0.00 0.00 0.00 4.30
3391 7155 2.343163 GACGAGCGGAGATGGTGAGG 62.343 65.000 0.00 0.00 33.17 3.86
3392 7156 1.064946 GACGAGCGGAGATGGTGAG 59.935 63.158 0.00 0.00 33.17 3.51
3393 7157 2.761195 CGACGAGCGGAGATGGTGA 61.761 63.158 0.00 0.00 33.17 4.02
3394 7158 2.278206 CGACGAGCGGAGATGGTG 60.278 66.667 0.00 0.00 33.17 4.17
3395 7159 4.194720 GCGACGAGCGGAGATGGT 62.195 66.667 0.00 0.00 37.73 3.55
3421 7185 3.865929 AAGTCTGTGGGCGCACGAG 62.866 63.158 26.42 22.73 0.00 4.18
3422 7186 3.923864 AAGTCTGTGGGCGCACGA 61.924 61.111 26.42 22.34 0.00 4.35
3423 7187 3.716006 CAAGTCTGTGGGCGCACG 61.716 66.667 26.42 20.66 0.00 5.34
3424 7188 2.591715 ACAAGTCTGTGGGCGCAC 60.592 61.111 25.75 25.75 33.30 5.34
3425 7189 2.280797 GACAAGTCTGTGGGCGCA 60.281 61.111 10.83 0.00 35.30 6.09
3426 7190 3.050275 GGACAAGTCTGTGGGCGC 61.050 66.667 0.00 0.00 35.30 6.53
3427 7191 2.358737 GGGACAAGTCTGTGGGCG 60.359 66.667 0.00 0.00 35.30 6.13
3428 7192 2.034221 GGGGACAAGTCTGTGGGC 59.966 66.667 0.00 0.00 35.30 5.36
3429 7193 2.347490 CGGGGACAAGTCTGTGGG 59.653 66.667 0.00 0.00 35.30 4.61
3430 7194 2.052047 AACCGGGGACAAGTCTGTGG 62.052 60.000 6.32 2.53 35.30 4.17
3431 7195 0.884704 CAACCGGGGACAAGTCTGTG 60.885 60.000 6.32 0.00 35.30 3.66
3432 7196 1.052124 TCAACCGGGGACAAGTCTGT 61.052 55.000 6.32 0.00 38.98 3.41
3433 7197 0.107831 TTCAACCGGGGACAAGTCTG 59.892 55.000 6.32 0.00 0.00 3.51
3434 7198 0.396811 CTTCAACCGGGGACAAGTCT 59.603 55.000 6.32 0.00 0.00 3.24
3435 7199 1.235281 GCTTCAACCGGGGACAAGTC 61.235 60.000 6.32 0.00 0.00 3.01
3436 7200 1.228154 GCTTCAACCGGGGACAAGT 60.228 57.895 6.32 0.00 0.00 3.16
3437 7201 0.537371 AAGCTTCAACCGGGGACAAG 60.537 55.000 6.32 3.24 0.00 3.16
3438 7202 0.106419 AAAGCTTCAACCGGGGACAA 60.106 50.000 6.32 0.00 0.00 3.18
3439 7203 0.106419 AAAAGCTTCAACCGGGGACA 60.106 50.000 6.32 0.00 0.00 4.02
3440 7204 0.596577 GAAAAGCTTCAACCGGGGAC 59.403 55.000 6.32 0.00 0.00 4.46
3441 7205 0.538746 GGAAAAGCTTCAACCGGGGA 60.539 55.000 6.32 0.00 32.75 4.81
3442 7206 0.539669 AGGAAAAGCTTCAACCGGGG 60.540 55.000 6.32 0.00 32.75 5.73
3443 7207 1.810755 GTAGGAAAAGCTTCAACCGGG 59.189 52.381 6.32 0.00 32.75 5.73
3444 7208 1.463444 CGTAGGAAAAGCTTCAACCGG 59.537 52.381 0.00 0.00 32.75 5.28
3445 7209 1.136057 GCGTAGGAAAAGCTTCAACCG 60.136 52.381 0.00 0.00 32.75 4.44
3446 7210 1.199327 GGCGTAGGAAAAGCTTCAACC 59.801 52.381 0.00 3.86 32.75 3.77
3447 7211 1.199327 GGGCGTAGGAAAAGCTTCAAC 59.801 52.381 0.00 0.00 32.75 3.18
3448 7212 1.530323 GGGCGTAGGAAAAGCTTCAA 58.470 50.000 0.00 0.00 32.75 2.69
3449 7213 0.672401 CGGGCGTAGGAAAAGCTTCA 60.672 55.000 0.00 0.00 32.75 3.02
3450 7214 0.672711 ACGGGCGTAGGAAAAGCTTC 60.673 55.000 0.00 0.00 32.56 3.86
3451 7215 0.250597 AACGGGCGTAGGAAAAGCTT 60.251 50.000 0.00 0.00 32.56 3.74
3452 7216 0.953960 CAACGGGCGTAGGAAAAGCT 60.954 55.000 0.00 0.00 32.56 3.74
3453 7217 0.952010 TCAACGGGCGTAGGAAAAGC 60.952 55.000 0.00 0.00 0.00 3.51
3454 7218 1.463444 CTTCAACGGGCGTAGGAAAAG 59.537 52.381 0.00 0.00 0.00 2.27
3455 7219 1.515081 CTTCAACGGGCGTAGGAAAA 58.485 50.000 0.00 0.00 0.00 2.29
3456 7220 0.952010 GCTTCAACGGGCGTAGGAAA 60.952 55.000 0.00 0.00 0.00 3.13
3457 7221 1.375013 GCTTCAACGGGCGTAGGAA 60.375 57.895 0.00 0.00 0.00 3.36
3458 7222 1.823169 AAGCTTCAACGGGCGTAGGA 61.823 55.000 0.00 0.00 0.00 2.94
3459 7223 0.953960 AAAGCTTCAACGGGCGTAGG 60.954 55.000 0.00 0.00 0.00 3.18
3460 7224 0.872388 AAAAGCTTCAACGGGCGTAG 59.128 50.000 0.00 0.00 0.00 3.51
3461 7225 1.310904 AAAAAGCTTCAACGGGCGTA 58.689 45.000 0.00 0.00 0.00 4.42
3462 7226 2.112029 AAAAAGCTTCAACGGGCGT 58.888 47.368 0.00 0.00 0.00 5.68
3477 7241 5.186797 TGGAAAAGCTTCAGTCAAGGAAAAA 59.813 36.000 0.00 0.00 32.75 1.94
3478 7242 4.709397 TGGAAAAGCTTCAGTCAAGGAAAA 59.291 37.500 0.00 0.00 32.75 2.29
3479 7243 4.277476 TGGAAAAGCTTCAGTCAAGGAAA 58.723 39.130 0.00 0.00 32.75 3.13
3480 7244 3.897239 TGGAAAAGCTTCAGTCAAGGAA 58.103 40.909 0.00 0.00 32.75 3.36
3481 7245 3.576078 TGGAAAAGCTTCAGTCAAGGA 57.424 42.857 0.00 0.00 32.75 3.36
3482 7246 3.057033 CCATGGAAAAGCTTCAGTCAAGG 60.057 47.826 5.56 0.00 32.75 3.61
3483 7247 3.057033 CCCATGGAAAAGCTTCAGTCAAG 60.057 47.826 15.22 0.00 32.75 3.02
3484 7248 2.892852 CCCATGGAAAAGCTTCAGTCAA 59.107 45.455 15.22 0.00 32.75 3.18
3485 7249 2.517959 CCCATGGAAAAGCTTCAGTCA 58.482 47.619 15.22 0.00 32.75 3.41
3486 7250 1.821136 CCCCATGGAAAAGCTTCAGTC 59.179 52.381 15.22 0.00 32.75 3.51
3487 7251 1.550869 CCCCCATGGAAAAGCTTCAGT 60.551 52.381 15.22 0.00 35.39 3.41
3488 7252 1.188863 CCCCCATGGAAAAGCTTCAG 58.811 55.000 15.22 0.00 35.39 3.02
3489 7253 0.486879 ACCCCCATGGAAAAGCTTCA 59.513 50.000 15.22 0.00 38.00 3.02
3490 7254 1.276138 CAACCCCCATGGAAAAGCTTC 59.724 52.381 15.22 0.00 38.00 3.86
3491 7255 1.132881 TCAACCCCCATGGAAAAGCTT 60.133 47.619 15.22 0.00 38.00 3.74
3492 7256 0.486879 TCAACCCCCATGGAAAAGCT 59.513 50.000 15.22 0.00 38.00 3.74
3493 7257 1.276138 CTTCAACCCCCATGGAAAAGC 59.724 52.381 15.22 0.00 38.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.