Multiple sequence alignment - TraesCS6D01G304000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G304000 chr6D 100.000 4673 0 0 1 4673 412625536 412630208 0.000000e+00 8630.0
1 TraesCS6D01G304000 chr6D 87.692 1560 125 21 2419 3974 412179193 412177697 0.000000e+00 1755.0
2 TraesCS6D01G304000 chr6D 92.357 942 56 6 1001 1942 412180325 412179400 0.000000e+00 1327.0
3 TraesCS6D01G304000 chr6D 87.126 1103 109 16 850 1940 412010647 412009566 0.000000e+00 1219.0
4 TraesCS6D01G304000 chr6D 83.495 618 54 26 150 734 412181109 412180507 2.480000e-147 532.0
5 TraesCS6D01G304000 chr6D 82.035 462 67 15 3972 4424 458527005 458527459 3.410000e-101 379.0
6 TraesCS6D01G304000 chr6D 82.993 441 28 21 327 734 412011102 412010676 5.750000e-94 355.0
7 TraesCS6D01G304000 chr6D 83.616 177 15 5 167 329 412013029 412012853 2.250000e-33 154.0
8 TraesCS6D01G304000 chr6D 87.302 126 15 1 1976 2100 412179314 412179189 4.870000e-30 143.0
9 TraesCS6D01G304000 chr6B 92.385 3086 182 23 840 3911 620284126 620281080 0.000000e+00 4348.0
10 TraesCS6D01G304000 chr6B 93.385 771 38 8 3908 4673 620273478 620272716 0.000000e+00 1129.0
11 TraesCS6D01G304000 chr6B 83.819 618 50 23 150 734 620284754 620284154 4.110000e-150 542.0
12 TraesCS6D01G304000 chr6B 86.071 280 34 5 3972 4247 151807617 151807895 3.540000e-76 296.0
13 TraesCS6D01G304000 chr6B 92.523 107 8 0 733 839 641022654 641022548 2.250000e-33 154.0
14 TraesCS6D01G304000 chr6A 93.900 2213 113 14 1948 4153 557794041 557791844 0.000000e+00 3319.0
15 TraesCS6D01G304000 chr6A 91.548 982 64 7 983 1955 557921330 557920359 0.000000e+00 1336.0
16 TraesCS6D01G304000 chr6A 93.062 908 61 2 3075 3980 557365666 557364759 0.000000e+00 1327.0
17 TraesCS6D01G304000 chr6A 86.437 1047 103 15 908 1940 557402301 557401280 0.000000e+00 1110.0
18 TraesCS6D01G304000 chr6A 85.697 839 116 3 3056 3892 557398597 557397761 0.000000e+00 881.0
19 TraesCS6D01G304000 chr6A 84.876 443 39 9 4216 4657 557742523 557742108 5.590000e-114 422.0
20 TraesCS6D01G304000 chr6A 78.723 611 55 32 150 734 557923076 557922515 5.790000e-89 339.0
21 TraesCS6D01G304000 chr6A 88.258 264 18 6 476 734 557402581 557402326 2.110000e-78 303.0
22 TraesCS6D01G304000 chr6A 90.526 190 17 1 209 398 557403135 557402947 2.790000e-62 250.0
23 TraesCS6D01G304000 chr6A 84.862 218 32 1 4247 4464 329086571 329086787 7.870000e-53 219.0
24 TraesCS6D01G304000 chr6A 93.458 107 7 0 733 839 300270506 300270612 4.840000e-35 159.0
25 TraesCS6D01G304000 chr6A 92.661 109 8 0 732 840 613271613 613271505 1.740000e-34 158.0
26 TraesCS6D01G304000 chr6A 88.889 99 9 2 834 930 557922493 557922395 2.280000e-23 121.0
27 TraesCS6D01G304000 chr6A 89.655 58 3 2 153 210 557404103 557404049 2.330000e-08 71.3
28 TraesCS6D01G304000 chr4A 84.744 898 120 11 1028 1912 743866886 743867779 0.000000e+00 883.0
29 TraesCS6D01G304000 chr4A 82.821 943 132 16 998 1914 742890711 742891649 0.000000e+00 817.0
30 TraesCS6D01G304000 chr4A 86.555 714 93 3 3050 3762 743868059 743868770 0.000000e+00 784.0
31 TraesCS6D01G304000 chr4A 85.434 714 101 3 3050 3762 742891979 742892690 0.000000e+00 739.0
32 TraesCS6D01G304000 chr4A 84.071 226 35 1 4239 4464 516585849 516586073 2.830000e-52 217.0
33 TraesCS6D01G304000 chr7D 84.199 924 116 14 1010 1912 1419496 1418582 0.000000e+00 870.0
34 TraesCS6D01G304000 chr7D 86.037 709 95 3 3050 3758 1414456 1413752 0.000000e+00 758.0
35 TraesCS6D01G304000 chr7D 91.964 112 8 1 729 839 52468758 52468647 6.260000e-34 156.0
36 TraesCS6D01G304000 chr7D 100.000 30 0 0 4471 4500 613267050 613267079 6.530000e-04 56.5
37 TraesCS6D01G304000 chrUn 86.611 717 91 4 3050 3762 295470517 295471232 0.000000e+00 787.0
38 TraesCS6D01G304000 chrUn 83.656 826 112 12 1012 1818 292914331 292915152 0.000000e+00 756.0
39 TraesCS6D01G304000 chr3D 86.643 277 32 5 3972 4245 566906402 566906128 7.600000e-78 302.0
40 TraesCS6D01G304000 chr3D 85.614 285 37 4 3970 4251 14382738 14383021 3.540000e-76 296.0
41 TraesCS6D01G304000 chr4B 85.971 278 35 4 3971 4245 149564347 149564623 1.270000e-75 294.0
42 TraesCS6D01G304000 chr3B 85.971 278 35 4 3971 4245 786619095 786619371 1.270000e-75 294.0
43 TraesCS6D01G304000 chr3B 90.991 111 10 0 729 839 50957282 50957172 2.910000e-32 150.0
44 TraesCS6D01G304000 chr5B 78.396 449 87 7 3972 4412 439839682 439840128 2.750000e-72 283.0
45 TraesCS6D01G304000 chr5B 89.167 120 13 0 720 839 447470825 447470944 2.910000e-32 150.0
46 TraesCS6D01G304000 chr1B 89.231 195 20 1 4245 4439 558919614 558919807 4.670000e-60 243.0
47 TraesCS6D01G304000 chr5A 82.836 268 39 7 4243 4505 552544434 552544699 2.810000e-57 233.0
48 TraesCS6D01G304000 chr5A 90.598 117 10 1 733 848 413835989 413835873 2.250000e-33 154.0
49 TraesCS6D01G304000 chr2B 87.755 196 23 1 4244 4439 776136022 776136216 1.310000e-55 228.0
50 TraesCS6D01G304000 chr7A 84.651 215 32 1 4250 4464 134346729 134346516 3.660000e-51 213.0
51 TraesCS6D01G304000 chr4D 92.593 108 8 0 733 840 381556261 381556368 6.260000e-34 156.0
52 TraesCS6D01G304000 chr3A 91.964 112 8 1 733 843 742448372 742448261 6.260000e-34 156.0
53 TraesCS6D01G304000 chr3A 100.000 33 0 0 4477 4509 720680948 720680980 1.400000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G304000 chr6D 412625536 412630208 4672 False 8630.000000 8630 100.000000 1 4673 1 chr6D.!!$F1 4672
1 TraesCS6D01G304000 chr6D 412177697 412181109 3412 True 939.250000 1755 87.711500 150 3974 4 chr6D.!!$R2 3824
2 TraesCS6D01G304000 chr6D 412009566 412013029 3463 True 576.000000 1219 84.578333 167 1940 3 chr6D.!!$R1 1773
3 TraesCS6D01G304000 chr6B 620281080 620284754 3674 True 2445.000000 4348 88.102000 150 3911 2 chr6B.!!$R3 3761
4 TraesCS6D01G304000 chr6B 620272716 620273478 762 True 1129.000000 1129 93.385000 3908 4673 1 chr6B.!!$R1 765
5 TraesCS6D01G304000 chr6A 557791844 557794041 2197 True 3319.000000 3319 93.900000 1948 4153 1 chr6A.!!$R3 2205
6 TraesCS6D01G304000 chr6A 557364759 557365666 907 True 1327.000000 1327 93.062000 3075 3980 1 chr6A.!!$R1 905
7 TraesCS6D01G304000 chr6A 557920359 557923076 2717 True 598.666667 1336 86.386667 150 1955 3 chr6A.!!$R6 1805
8 TraesCS6D01G304000 chr6A 557397761 557404103 6342 True 523.060000 1110 88.114600 153 3892 5 chr6A.!!$R5 3739
9 TraesCS6D01G304000 chr4A 743866886 743868770 1884 False 833.500000 883 85.649500 1028 3762 2 chr4A.!!$F3 2734
10 TraesCS6D01G304000 chr4A 742890711 742892690 1979 False 778.000000 817 84.127500 998 3762 2 chr4A.!!$F2 2764
11 TraesCS6D01G304000 chr7D 1418582 1419496 914 True 870.000000 870 84.199000 1010 1912 1 chr7D.!!$R2 902
12 TraesCS6D01G304000 chr7D 1413752 1414456 704 True 758.000000 758 86.037000 3050 3758 1 chr7D.!!$R1 708
13 TraesCS6D01G304000 chrUn 295470517 295471232 715 False 787.000000 787 86.611000 3050 3762 1 chrUn.!!$F2 712
14 TraesCS6D01G304000 chrUn 292914331 292915152 821 False 756.000000 756 83.656000 1012 1818 1 chrUn.!!$F1 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
89 90 0.034186 AGGCAATTGAATGGGCGAGA 60.034 50.000 10.34 0.0 0.0 4.04 F
649 3638 0.041535 TAGGGGCGGTTAGAGGTTGA 59.958 55.000 0.00 0.0 0.0 3.18 F
1575 5636 0.678684 TCATGACAGACTCGGCCGTA 60.679 55.000 27.15 11.2 0.0 4.02 F
1901 5980 1.065854 AGTCATAAGGGCACTGCTCAC 60.066 52.381 3.10 0.0 0.0 3.51 F
2681 6926 0.673437 CTTTTGCGGGGTGATGTGTT 59.327 50.000 0.00 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1849 5928 1.202031 GGAAACTCGCGTATTGCCTTG 60.202 52.381 5.77 0.00 42.08 3.61 R
2106 6272 1.197721 ACGCAATTTGCTTTCTCTCGG 59.802 47.619 18.57 3.12 42.25 4.63 R
2681 6926 0.026933 CAACGCGTGCAACTACAACA 59.973 50.000 14.98 0.00 31.75 3.33 R
3125 9327 1.948611 GCCGCATGACTCTTGGGTTTA 60.949 52.381 0.00 0.00 0.00 2.01 R
4546 10758 1.134699 TCGATGCAGACATTGGGAGAC 60.135 52.381 0.00 0.00 38.13 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.741027 ACTTCATATGATATGGAAACTGCTG 57.259 36.000 12.17 0.00 0.00 4.41
26 27 6.713903 ACTTCATATGATATGGAAACTGCTGG 59.286 38.462 12.17 0.00 0.00 4.85
27 28 5.563592 TCATATGATATGGAAACTGCTGGG 58.436 41.667 12.17 0.00 0.00 4.45
28 29 3.959495 ATGATATGGAAACTGCTGGGT 57.041 42.857 0.00 0.00 0.00 4.51
29 30 6.272090 TCATATGATATGGAAACTGCTGGGTA 59.728 38.462 12.17 0.00 0.00 3.69
30 31 4.853468 TGATATGGAAACTGCTGGGTAA 57.147 40.909 0.00 0.00 0.00 2.85
31 32 4.523083 TGATATGGAAACTGCTGGGTAAC 58.477 43.478 0.00 0.00 0.00 2.50
32 33 4.227300 TGATATGGAAACTGCTGGGTAACT 59.773 41.667 0.00 0.00 0.00 2.24
33 34 2.270352 TGGAAACTGCTGGGTAACTG 57.730 50.000 0.00 0.00 0.00 3.16
34 35 1.493022 TGGAAACTGCTGGGTAACTGT 59.507 47.619 0.00 0.00 0.00 3.55
35 36 2.706723 TGGAAACTGCTGGGTAACTGTA 59.293 45.455 0.00 0.00 0.00 2.74
36 37 3.329520 TGGAAACTGCTGGGTAACTGTAT 59.670 43.478 0.00 0.00 0.00 2.29
37 38 3.939592 GGAAACTGCTGGGTAACTGTATC 59.060 47.826 0.00 0.00 0.00 2.24
38 39 3.629142 AACTGCTGGGTAACTGTATCC 57.371 47.619 0.00 0.00 0.00 2.59
39 40 2.546899 ACTGCTGGGTAACTGTATCCA 58.453 47.619 0.00 0.00 38.24 3.41
40 41 2.910319 ACTGCTGGGTAACTGTATCCAA 59.090 45.455 0.00 0.00 40.15 3.53
41 42 3.523564 ACTGCTGGGTAACTGTATCCAAT 59.476 43.478 0.00 0.00 40.15 3.16
42 43 4.018415 ACTGCTGGGTAACTGTATCCAATT 60.018 41.667 0.00 0.00 40.15 2.32
43 44 4.269183 TGCTGGGTAACTGTATCCAATTG 58.731 43.478 0.00 0.00 40.15 2.32
44 45 4.018870 TGCTGGGTAACTGTATCCAATTGA 60.019 41.667 7.12 0.00 40.15 2.57
45 46 4.335594 GCTGGGTAACTGTATCCAATTGAC 59.664 45.833 7.12 0.00 40.15 3.18
46 47 4.850680 TGGGTAACTGTATCCAATTGACC 58.149 43.478 7.12 2.77 37.57 4.02
47 48 3.875134 GGGTAACTGTATCCAATTGACCG 59.125 47.826 7.12 0.00 29.81 4.79
48 49 4.510571 GGTAACTGTATCCAATTGACCGT 58.489 43.478 7.12 0.00 0.00 4.83
49 50 5.395546 GGGTAACTGTATCCAATTGACCGTA 60.396 44.000 7.12 0.00 29.81 4.02
50 51 6.108015 GGTAACTGTATCCAATTGACCGTAA 58.892 40.000 7.12 0.00 0.00 3.18
51 52 6.764560 GGTAACTGTATCCAATTGACCGTAAT 59.235 38.462 7.12 0.00 0.00 1.89
52 53 7.927629 GGTAACTGTATCCAATTGACCGTAATA 59.072 37.037 7.12 0.00 0.00 0.98
53 54 7.781548 AACTGTATCCAATTGACCGTAATAC 57.218 36.000 7.12 5.77 0.00 1.89
54 55 6.880484 ACTGTATCCAATTGACCGTAATACA 58.120 36.000 7.12 9.43 0.00 2.29
55 56 6.984474 ACTGTATCCAATTGACCGTAATACAG 59.016 38.462 22.33 22.33 45.26 2.74
56 57 6.880484 TGTATCCAATTGACCGTAATACAGT 58.120 36.000 7.12 0.00 0.00 3.55
57 58 6.759356 TGTATCCAATTGACCGTAATACAGTG 59.241 38.462 7.12 0.00 0.00 3.66
58 59 4.509616 TCCAATTGACCGTAATACAGTGG 58.490 43.478 7.12 0.00 0.00 4.00
59 60 4.020039 TCCAATTGACCGTAATACAGTGGT 60.020 41.667 7.12 0.00 37.44 4.16
60 61 4.698304 CCAATTGACCGTAATACAGTGGTT 59.302 41.667 7.12 0.00 34.12 3.67
61 62 5.391523 CCAATTGACCGTAATACAGTGGTTG 60.392 44.000 7.12 0.00 34.12 3.77
62 63 3.322211 TGACCGTAATACAGTGGTTGG 57.678 47.619 0.00 0.00 34.12 3.77
63 64 2.027929 TGACCGTAATACAGTGGTTGGG 60.028 50.000 0.00 0.00 34.12 4.12
64 65 2.234414 GACCGTAATACAGTGGTTGGGA 59.766 50.000 0.00 0.00 34.12 4.37
65 66 2.841881 ACCGTAATACAGTGGTTGGGAT 59.158 45.455 0.00 0.00 0.00 3.85
66 67 3.264964 ACCGTAATACAGTGGTTGGGATT 59.735 43.478 0.00 0.00 0.00 3.01
67 68 3.875134 CCGTAATACAGTGGTTGGGATTC 59.125 47.826 0.00 0.00 0.00 2.52
68 69 4.383770 CCGTAATACAGTGGTTGGGATTCT 60.384 45.833 0.00 0.00 0.00 2.40
69 70 4.570772 CGTAATACAGTGGTTGGGATTCTG 59.429 45.833 0.00 0.00 0.00 3.02
70 71 4.927267 AATACAGTGGTTGGGATTCTGA 57.073 40.909 0.00 0.00 0.00 3.27
71 72 2.867109 ACAGTGGTTGGGATTCTGAG 57.133 50.000 0.00 0.00 0.00 3.35
72 73 1.352352 ACAGTGGTTGGGATTCTGAGG 59.648 52.381 0.00 0.00 0.00 3.86
73 74 0.329596 AGTGGTTGGGATTCTGAGGC 59.670 55.000 0.00 0.00 0.00 4.70
74 75 0.038166 GTGGTTGGGATTCTGAGGCA 59.962 55.000 0.00 0.00 0.00 4.75
75 76 0.776810 TGGTTGGGATTCTGAGGCAA 59.223 50.000 0.00 0.00 0.00 4.52
76 77 1.358787 TGGTTGGGATTCTGAGGCAAT 59.641 47.619 0.00 0.00 0.00 3.56
77 78 2.225343 TGGTTGGGATTCTGAGGCAATT 60.225 45.455 0.00 0.00 0.00 2.32
78 79 2.167075 GGTTGGGATTCTGAGGCAATTG 59.833 50.000 0.00 0.00 0.00 2.32
79 80 3.091545 GTTGGGATTCTGAGGCAATTGA 58.908 45.455 10.34 0.00 0.00 2.57
80 81 3.454719 TGGGATTCTGAGGCAATTGAA 57.545 42.857 10.34 0.00 0.00 2.69
81 82 3.985127 TGGGATTCTGAGGCAATTGAAT 58.015 40.909 10.34 0.00 32.59 2.57
82 83 3.702548 TGGGATTCTGAGGCAATTGAATG 59.297 43.478 10.34 0.00 30.41 2.67
83 84 3.069158 GGGATTCTGAGGCAATTGAATGG 59.931 47.826 10.34 0.00 30.41 3.16
84 85 3.069158 GGATTCTGAGGCAATTGAATGGG 59.931 47.826 10.34 0.00 30.41 4.00
85 86 1.477553 TCTGAGGCAATTGAATGGGC 58.522 50.000 10.34 0.00 0.00 5.36
86 87 0.101759 CTGAGGCAATTGAATGGGCG 59.898 55.000 10.34 0.00 0.00 6.13
87 88 0.323269 TGAGGCAATTGAATGGGCGA 60.323 50.000 10.34 0.00 0.00 5.54
88 89 0.383231 GAGGCAATTGAATGGGCGAG 59.617 55.000 10.34 0.00 0.00 5.03
89 90 0.034186 AGGCAATTGAATGGGCGAGA 60.034 50.000 10.34 0.00 0.00 4.04
90 91 1.035139 GGCAATTGAATGGGCGAGAT 58.965 50.000 10.34 0.00 0.00 2.75
91 92 1.410153 GGCAATTGAATGGGCGAGATT 59.590 47.619 10.34 0.00 0.00 2.40
92 93 2.544486 GGCAATTGAATGGGCGAGATTC 60.544 50.000 10.34 0.00 0.00 2.52
93 94 2.544486 GCAATTGAATGGGCGAGATTCC 60.544 50.000 10.34 0.00 0.00 3.01
94 95 2.689471 CAATTGAATGGGCGAGATTCCA 59.311 45.455 0.00 0.00 37.46 3.53
95 96 2.042686 TTGAATGGGCGAGATTCCAG 57.957 50.000 0.00 0.00 36.38 3.86
96 97 0.911769 TGAATGGGCGAGATTCCAGT 59.088 50.000 0.00 0.00 36.38 4.00
97 98 1.303309 GAATGGGCGAGATTCCAGTG 58.697 55.000 0.00 0.00 36.38 3.66
98 99 0.107017 AATGGGCGAGATTCCAGTGG 60.107 55.000 1.40 1.40 36.38 4.00
99 100 1.987807 ATGGGCGAGATTCCAGTGGG 61.988 60.000 9.92 0.00 36.38 4.61
100 101 2.514824 GGCGAGATTCCAGTGGGC 60.515 66.667 9.92 3.06 0.00 5.36
101 102 2.268920 GCGAGATTCCAGTGGGCA 59.731 61.111 9.92 0.00 0.00 5.36
102 103 1.153086 GCGAGATTCCAGTGGGCAT 60.153 57.895 9.92 1.47 0.00 4.40
103 104 0.106708 GCGAGATTCCAGTGGGCATA 59.893 55.000 9.92 0.00 0.00 3.14
104 105 1.875576 GCGAGATTCCAGTGGGCATAG 60.876 57.143 9.92 0.00 0.00 2.23
105 106 1.414181 CGAGATTCCAGTGGGCATAGT 59.586 52.381 9.92 0.00 0.00 2.12
106 107 2.546795 CGAGATTCCAGTGGGCATAGTC 60.547 54.545 9.92 0.00 0.00 2.59
107 108 2.703007 GAGATTCCAGTGGGCATAGTCT 59.297 50.000 9.92 1.01 0.00 3.24
108 109 2.703007 AGATTCCAGTGGGCATAGTCTC 59.297 50.000 9.92 0.00 0.00 3.36
109 110 0.824109 TTCCAGTGGGCATAGTCTCG 59.176 55.000 9.92 0.00 0.00 4.04
110 111 1.043116 TCCAGTGGGCATAGTCTCGG 61.043 60.000 9.92 0.00 0.00 4.63
111 112 1.330655 CCAGTGGGCATAGTCTCGGT 61.331 60.000 0.00 0.00 0.00 4.69
112 113 0.179100 CAGTGGGCATAGTCTCGGTG 60.179 60.000 0.00 0.00 0.00 4.94
113 114 0.614979 AGTGGGCATAGTCTCGGTGT 60.615 55.000 0.00 0.00 0.00 4.16
114 115 0.460284 GTGGGCATAGTCTCGGTGTG 60.460 60.000 0.00 0.00 0.00 3.82
115 116 1.521681 GGGCATAGTCTCGGTGTGC 60.522 63.158 0.00 0.00 35.17 4.57
116 117 1.517832 GGCATAGTCTCGGTGTGCT 59.482 57.895 0.00 0.00 36.15 4.40
117 118 0.528684 GGCATAGTCTCGGTGTGCTC 60.529 60.000 0.00 0.00 36.15 4.26
118 119 0.528684 GCATAGTCTCGGTGTGCTCC 60.529 60.000 0.00 0.00 33.25 4.70
119 120 1.107114 CATAGTCTCGGTGTGCTCCT 58.893 55.000 0.00 0.00 0.00 3.69
120 121 2.298610 CATAGTCTCGGTGTGCTCCTA 58.701 52.381 0.00 0.00 0.00 2.94
121 122 2.039818 TAGTCTCGGTGTGCTCCTAG 57.960 55.000 0.00 0.00 0.00 3.02
122 123 0.681564 AGTCTCGGTGTGCTCCTAGG 60.682 60.000 0.82 0.82 0.00 3.02
123 124 2.052690 TCTCGGTGTGCTCCTAGGC 61.053 63.158 2.96 0.00 0.00 3.93
124 125 2.283604 TCGGTGTGCTCCTAGGCA 60.284 61.111 2.96 0.00 40.15 4.75
125 126 1.680522 CTCGGTGTGCTCCTAGGCAT 61.681 60.000 2.96 0.00 44.34 4.40
126 127 1.221840 CGGTGTGCTCCTAGGCATT 59.778 57.895 2.96 0.00 44.34 3.56
127 128 0.392998 CGGTGTGCTCCTAGGCATTT 60.393 55.000 2.96 0.00 44.34 2.32
128 129 1.839424 GGTGTGCTCCTAGGCATTTT 58.161 50.000 2.96 0.00 44.34 1.82
129 130 1.745653 GGTGTGCTCCTAGGCATTTTC 59.254 52.381 2.96 0.00 44.34 2.29
130 131 1.398390 GTGTGCTCCTAGGCATTTTCG 59.602 52.381 2.96 0.00 44.34 3.46
131 132 1.017387 GTGCTCCTAGGCATTTTCGG 58.983 55.000 2.96 0.00 44.34 4.30
132 133 0.908910 TGCTCCTAGGCATTTTCGGA 59.091 50.000 2.96 0.00 37.29 4.55
133 134 1.134401 TGCTCCTAGGCATTTTCGGAG 60.134 52.381 2.96 0.00 43.18 4.63
134 135 1.587547 CTCCTAGGCATTTTCGGAGC 58.412 55.000 2.96 0.00 35.35 4.70
135 136 1.139853 CTCCTAGGCATTTTCGGAGCT 59.860 52.381 2.96 0.00 35.35 4.09
136 137 1.139058 TCCTAGGCATTTTCGGAGCTC 59.861 52.381 4.71 4.71 0.00 4.09
137 138 1.587547 CTAGGCATTTTCGGAGCTCC 58.412 55.000 23.79 23.79 0.00 4.70
138 139 1.139853 CTAGGCATTTTCGGAGCTCCT 59.860 52.381 29.73 8.53 0.00 3.69
139 140 1.204146 AGGCATTTTCGGAGCTCCTA 58.796 50.000 29.73 17.64 0.00 2.94
140 141 1.771255 AGGCATTTTCGGAGCTCCTAT 59.229 47.619 29.73 14.65 0.00 2.57
141 142 2.147150 GGCATTTTCGGAGCTCCTATC 58.853 52.381 29.73 11.44 0.00 2.08
142 143 1.795286 GCATTTTCGGAGCTCCTATCG 59.205 52.381 29.73 16.74 0.00 2.92
143 144 2.545952 GCATTTTCGGAGCTCCTATCGA 60.546 50.000 29.73 18.80 0.00 3.59
144 145 3.862642 GCATTTTCGGAGCTCCTATCGAT 60.863 47.826 29.73 14.16 0.00 3.59
145 146 4.310769 CATTTTCGGAGCTCCTATCGATT 58.689 43.478 29.73 6.44 0.00 3.34
146 147 4.402056 TTTTCGGAGCTCCTATCGATTT 57.598 40.909 29.73 0.00 0.00 2.17
147 148 3.644884 TTCGGAGCTCCTATCGATTTC 57.355 47.619 29.73 0.03 0.00 2.17
148 149 2.865079 TCGGAGCTCCTATCGATTTCT 58.135 47.619 29.73 0.00 0.00 2.52
154 155 5.010617 GGAGCTCCTATCGATTTCTTCTTCT 59.989 44.000 26.25 0.00 0.00 2.85
205 207 6.290294 GTAGTACATTTCACTACTCCCCAA 57.710 41.667 0.00 0.00 43.27 4.12
211 1128 5.838521 ACATTTCACTACTCCCCAAACATTT 59.161 36.000 0.00 0.00 0.00 2.32
236 1153 5.984695 TTCTGTCACAGTAGCTACAGATT 57.015 39.130 25.28 1.85 45.58 2.40
237 1154 5.984695 TCTGTCACAGTAGCTACAGATTT 57.015 39.130 25.28 1.45 42.46 2.17
242 1159 9.803315 CTGTCACAGTAGCTACAGATTTATTAA 57.197 33.333 25.28 1.11 41.47 1.40
383 3066 0.179037 CATCATGTGCCTCCACGGAT 60.179 55.000 0.00 0.00 45.04 4.18
405 3095 1.153369 AAGCATATCACAGCGCGGT 60.153 52.632 7.58 7.58 35.48 5.68
412 3112 4.565166 GCATATCACAGCGCGGTATTATAA 59.435 41.667 14.13 0.00 0.00 0.98
434 3393 2.233605 TACGTTGTGATCTGGGCCGG 62.234 60.000 5.83 5.83 0.00 6.13
443 3402 0.765903 ATCTGGGCCGGATGTCAGAT 60.766 55.000 26.95 13.96 40.78 2.90
462 3421 9.527157 TGTCAGATTTATGATTCTACCCAAAAA 57.473 29.630 0.00 0.00 0.00 1.94
503 3484 9.939802 ACCTAAACCTAACAATTAACTAGAGTG 57.060 33.333 0.00 0.00 0.00 3.51
528 3510 1.538047 TTGTCCCAGCAAGCAATCTC 58.462 50.000 0.00 0.00 0.00 2.75
546 3532 6.676943 GCAATCTCTGTAGTGACTAGTGAGAC 60.677 46.154 19.75 9.37 32.55 3.36
573 3562 8.706492 TGAAGAGTAAACAGAAACTTTACGAA 57.294 30.769 0.00 0.00 38.56 3.85
588 3577 2.052782 ACGAACCTTCTGCTTTGGTT 57.947 45.000 0.00 0.00 45.57 3.67
589 3578 3.202829 ACGAACCTTCTGCTTTGGTTA 57.797 42.857 0.00 0.00 43.28 2.85
590 3579 3.751518 ACGAACCTTCTGCTTTGGTTAT 58.248 40.909 0.00 0.00 43.28 1.89
591 3580 4.901868 ACGAACCTTCTGCTTTGGTTATA 58.098 39.130 0.00 0.00 43.28 0.98
614 3603 3.232213 TCACGCTTGATTAGTCACTCC 57.768 47.619 0.00 0.00 33.11 3.85
649 3638 0.041535 TAGGGGCGGTTAGAGGTTGA 59.958 55.000 0.00 0.00 0.00 3.18
652 3641 1.810030 GGCGGTTAGAGGTTGAGCG 60.810 63.158 0.00 0.00 37.35 5.03
723 3712 5.567138 ATCGAGAACATCATTTCCAAACC 57.433 39.130 0.00 0.00 0.00 3.27
737 3726 8.250332 TCATTTCCAAACCTTGAATATTACTGC 58.750 33.333 0.00 0.00 0.00 4.40
738 3727 6.524101 TTCCAAACCTTGAATATTACTGCC 57.476 37.500 0.00 0.00 0.00 4.85
740 3729 5.885912 TCCAAACCTTGAATATTACTGCCTC 59.114 40.000 0.00 0.00 0.00 4.70
742 3731 4.073293 ACCTTGAATATTACTGCCTCCG 57.927 45.455 0.00 0.00 0.00 4.63
743 3732 3.454812 ACCTTGAATATTACTGCCTCCGT 59.545 43.478 0.00 0.00 0.00 4.69
744 3733 4.080526 ACCTTGAATATTACTGCCTCCGTT 60.081 41.667 0.00 0.00 0.00 4.44
746 3735 5.220854 CCTTGAATATTACTGCCTCCGTTTG 60.221 44.000 0.00 0.00 0.00 2.93
750 3739 7.051623 TGAATATTACTGCCTCCGTTTGTAAT 58.948 34.615 0.00 0.00 37.51 1.89
751 3740 7.554835 TGAATATTACTGCCTCCGTTTGTAATT 59.445 33.333 0.00 0.00 35.97 1.40
753 3742 6.673154 ATTACTGCCTCCGTTTGTAATTAC 57.327 37.500 8.75 8.75 32.09 1.89
754 3743 4.281898 ACTGCCTCCGTTTGTAATTACT 57.718 40.909 16.33 0.00 0.00 2.24
755 3744 4.648651 ACTGCCTCCGTTTGTAATTACTT 58.351 39.130 16.33 0.00 0.00 2.24
757 3746 4.391155 TGCCTCCGTTTGTAATTACTTGT 58.609 39.130 16.33 0.00 0.00 3.16
758 3747 4.453136 TGCCTCCGTTTGTAATTACTTGTC 59.547 41.667 16.33 4.42 0.00 3.18
762 3751 6.347402 CCTCCGTTTGTAATTACTTGTCACAG 60.347 42.308 16.33 4.99 0.00 3.66
763 3752 6.282167 TCCGTTTGTAATTACTTGTCACAGA 58.718 36.000 16.33 2.28 0.00 3.41
764 3753 6.762187 TCCGTTTGTAATTACTTGTCACAGAA 59.238 34.615 16.33 0.00 0.00 3.02
765 3754 7.280428 TCCGTTTGTAATTACTTGTCACAGAAA 59.720 33.333 16.33 3.07 0.00 2.52
766 3755 8.073768 CCGTTTGTAATTACTTGTCACAGAAAT 58.926 33.333 16.33 0.00 0.00 2.17
810 3799 7.786178 TTAGTTCTTGATACATCCATTTCCG 57.214 36.000 0.00 0.00 0.00 4.30
811 3800 5.989477 AGTTCTTGATACATCCATTTCCGA 58.011 37.500 0.00 0.00 0.00 4.55
812 3801 6.051717 AGTTCTTGATACATCCATTTCCGAG 58.948 40.000 0.00 0.00 0.00 4.63
813 3802 5.869649 TCTTGATACATCCATTTCCGAGA 57.130 39.130 0.00 0.00 0.00 4.04
814 3803 5.601662 TCTTGATACATCCATTTCCGAGAC 58.398 41.667 0.00 0.00 0.00 3.36
815 3804 5.128663 TCTTGATACATCCATTTCCGAGACA 59.871 40.000 0.00 0.00 0.00 3.41
816 3805 5.351948 TGATACATCCATTTCCGAGACAA 57.648 39.130 0.00 0.00 0.00 3.18
817 3806 5.739959 TGATACATCCATTTCCGAGACAAA 58.260 37.500 0.00 0.00 0.00 2.83
818 3807 6.356556 TGATACATCCATTTCCGAGACAAAT 58.643 36.000 0.00 0.00 0.00 2.32
819 3808 7.505258 TGATACATCCATTTCCGAGACAAATA 58.495 34.615 0.00 0.00 0.00 1.40
820 3809 7.990314 TGATACATCCATTTCCGAGACAAATAA 59.010 33.333 0.00 0.00 0.00 1.40
821 3810 8.924511 ATACATCCATTTCCGAGACAAATAAT 57.075 30.769 0.00 0.00 0.00 1.28
822 3811 7.645058 ACATCCATTTCCGAGACAAATAATT 57.355 32.000 0.00 0.00 0.00 1.40
823 3812 7.707104 ACATCCATTTCCGAGACAAATAATTC 58.293 34.615 0.00 0.00 0.00 2.17
824 3813 6.693315 TCCATTTCCGAGACAAATAATTCC 57.307 37.500 0.00 0.00 0.00 3.01
825 3814 5.295787 TCCATTTCCGAGACAAATAATTCCG 59.704 40.000 0.00 0.00 0.00 4.30
826 3815 5.295787 CCATTTCCGAGACAAATAATTCCGA 59.704 40.000 0.00 0.00 0.00 4.55
827 3816 6.183360 CCATTTCCGAGACAAATAATTCCGAA 60.183 38.462 0.00 0.00 0.00 4.30
828 3817 5.789710 TTCCGAGACAAATAATTCCGAAC 57.210 39.130 0.00 0.00 0.00 3.95
829 3818 3.861113 TCCGAGACAAATAATTCCGAACG 59.139 43.478 0.00 0.00 0.00 3.95
830 3819 3.000925 CCGAGACAAATAATTCCGAACGG 59.999 47.826 6.94 6.94 0.00 4.44
831 3820 3.861113 CGAGACAAATAATTCCGAACGGA 59.139 43.478 12.04 12.04 43.52 4.69
832 3821 4.026804 CGAGACAAATAATTCCGAACGGAG 60.027 45.833 15.34 5.60 46.06 4.63
833 3822 4.189231 AGACAAATAATTCCGAACGGAGG 58.811 43.478 15.34 4.52 46.06 4.30
834 3823 3.275999 ACAAATAATTCCGAACGGAGGG 58.724 45.455 15.34 5.11 46.06 4.30
835 3824 3.054948 ACAAATAATTCCGAACGGAGGGA 60.055 43.478 15.34 2.49 46.06 4.20
836 3825 3.470645 AATAATTCCGAACGGAGGGAG 57.529 47.619 15.34 0.00 46.06 4.30
837 3826 1.856629 TAATTCCGAACGGAGGGAGT 58.143 50.000 15.34 4.12 46.06 3.85
838 3827 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
883 3878 8.948631 TTTGGTTTGTTGCTATATTTGTTTCA 57.051 26.923 0.00 0.00 0.00 2.69
933 4955 2.362717 GCGAGGACCATATATAGAGCCC 59.637 54.545 0.00 0.00 0.00 5.19
940 4962 5.407407 ACCATATATAGAGCCCTTGTTCG 57.593 43.478 0.00 0.00 0.00 3.95
941 4963 5.084519 ACCATATATAGAGCCCTTGTTCGA 58.915 41.667 0.00 0.00 0.00 3.71
949 4976 3.633065 AGAGCCCTTGTTCGATCTACTAC 59.367 47.826 0.00 0.00 0.00 2.73
950 4977 3.362706 AGCCCTTGTTCGATCTACTACA 58.637 45.455 0.00 0.00 0.00 2.74
952 4979 4.113354 GCCCTTGTTCGATCTACTACAAG 58.887 47.826 15.36 15.36 44.32 3.16
953 4980 4.381718 GCCCTTGTTCGATCTACTACAAGT 60.382 45.833 18.96 0.00 43.60 3.16
954 4981 5.163581 GCCCTTGTTCGATCTACTACAAGTA 60.164 44.000 18.96 0.00 43.60 2.24
955 4982 6.461231 GCCCTTGTTCGATCTACTACAAGTAT 60.461 42.308 18.96 0.00 43.60 2.12
956 4983 6.918569 CCCTTGTTCGATCTACTACAAGTATG 59.081 42.308 18.96 8.20 43.60 2.39
965 4992 6.115450 TCTACTACAAGTATGTGCAGTACG 57.885 41.667 0.00 0.00 40.84 3.67
981 5008 4.838486 CGTGCGCGTCTCTCCCTC 62.838 72.222 12.43 0.00 0.00 4.30
985 5012 2.995872 GCGCGTCTCTCCCTCACTT 61.996 63.158 8.43 0.00 0.00 3.16
999 5036 0.984230 TCACTTTCGCCCTTCCTCAT 59.016 50.000 0.00 0.00 0.00 2.90
1006 5043 1.051812 CGCCCTTCCTCATATGGAGT 58.948 55.000 2.13 0.00 42.40 3.85
1023 5060 2.628657 GGAGTACTTCACGCTCCCATAT 59.371 50.000 0.00 0.00 42.09 1.78
1200 5252 3.706373 ATGCGCGACCTGTCCCTT 61.706 61.111 12.10 0.00 0.00 3.95
1230 5282 1.748403 GCTCATGATGCTCCGGGTA 59.252 57.895 0.00 0.00 0.00 3.69
1319 5371 1.872679 CGTTCTCGGAGCGGCTAAC 60.873 63.158 0.60 2.19 32.91 2.34
1343 5395 2.543802 CGGGCATCGACGAGCTCTA 61.544 63.158 12.85 0.00 42.43 2.43
1500 5555 3.984241 GTCTCGACGATCCAAGCG 58.016 61.111 0.00 0.00 0.00 4.68
1501 5556 1.428219 GTCTCGACGATCCAAGCGA 59.572 57.895 0.00 0.00 0.00 4.93
1502 5557 0.862283 GTCTCGACGATCCAAGCGAC 60.862 60.000 0.00 0.00 0.00 5.19
1504 5559 2.202440 CGACGATCCAAGCGACGT 60.202 61.111 0.00 0.00 40.73 4.34
1505 5560 3.676742 GACGATCCAAGCGACGTC 58.323 61.111 5.18 5.18 45.51 4.34
1506 5561 3.275088 ACGATCCAAGCGACGTCT 58.725 55.556 14.70 0.00 33.80 4.18
1507 5562 1.585006 ACGATCCAAGCGACGTCTT 59.415 52.632 14.70 0.00 33.80 3.01
1575 5636 0.678684 TCATGACAGACTCGGCCGTA 60.679 55.000 27.15 11.20 0.00 4.02
1775 5842 1.676014 GGACAACATCCTCAAGACCCG 60.676 57.143 0.00 0.00 45.22 5.28
1800 5867 2.225017 GGAGAGGAGGATGGGTAGAGAG 60.225 59.091 0.00 0.00 0.00 3.20
1901 5980 1.065854 AGTCATAAGGGCACTGCTCAC 60.066 52.381 3.10 0.00 0.00 3.51
2000 6142 9.418045 GCTATTTAAAACCATGCTTAAAACTCA 57.582 29.630 0.00 0.00 32.37 3.41
2076 6220 5.177326 TGCCAATCCTAAATTGCATGAAAC 58.823 37.500 0.00 0.00 0.00 2.78
2140 6306 6.855996 GCAAATTGCGTACATTAGCTTTATG 58.144 36.000 0.90 0.00 31.71 1.90
2318 6487 6.112734 TCTTGATGTATTTTATCGGCAGTGT 58.887 36.000 0.00 0.00 0.00 3.55
2325 6494 3.916359 TTTATCGGCAGTGTCCCATTA 57.084 42.857 0.00 0.00 0.00 1.90
2337 6506 6.627953 GCAGTGTCCCATTAATTTGCTATGTT 60.628 38.462 0.00 0.00 0.00 2.71
2339 6508 8.632679 CAGTGTCCCATTAATTTGCTATGTTAT 58.367 33.333 0.00 0.00 0.00 1.89
2434 6603 5.755861 CCTTTTCGATTTTAGCTAGGAGAGG 59.244 44.000 0.00 0.00 0.00 3.69
2660 6902 6.151985 TGACAAAGGATGTGTTGTTGTAGTTT 59.848 34.615 0.00 0.00 36.03 2.66
2661 6903 6.930731 ACAAAGGATGTGTTGTTGTAGTTTT 58.069 32.000 0.00 0.00 41.93 2.43
2662 6904 7.033185 ACAAAGGATGTGTTGTTGTAGTTTTC 58.967 34.615 0.00 0.00 41.93 2.29
2663 6905 7.093945 ACAAAGGATGTGTTGTTGTAGTTTTCT 60.094 33.333 0.00 0.00 41.93 2.52
2666 6908 7.836842 AGGATGTGTTGTTGTAGTTTTCTTTT 58.163 30.769 0.00 0.00 0.00 2.27
2667 6909 7.759433 AGGATGTGTTGTTGTAGTTTTCTTTTG 59.241 33.333 0.00 0.00 0.00 2.44
2669 6911 5.343593 TGTGTTGTTGTAGTTTTCTTTTGCG 59.656 36.000 0.00 0.00 0.00 4.85
2671 6913 4.035278 TGTTGTAGTTTTCTTTTGCGGG 57.965 40.909 0.00 0.00 0.00 6.13
2672 6914 3.181485 TGTTGTAGTTTTCTTTTGCGGGG 60.181 43.478 0.00 0.00 0.00 5.73
2673 6915 2.657143 TGTAGTTTTCTTTTGCGGGGT 58.343 42.857 0.00 0.00 0.00 4.95
2681 6926 0.673437 CTTTTGCGGGGTGATGTGTT 59.327 50.000 0.00 0.00 0.00 3.32
2688 6933 1.804151 CGGGGTGATGTGTTGTTGTAG 59.196 52.381 0.00 0.00 0.00 2.74
2689 6934 2.808933 CGGGGTGATGTGTTGTTGTAGT 60.809 50.000 0.00 0.00 0.00 2.73
2691 6936 3.004315 GGGGTGATGTGTTGTTGTAGTTG 59.996 47.826 0.00 0.00 0.00 3.16
2692 6937 3.550030 GGGTGATGTGTTGTTGTAGTTGC 60.550 47.826 0.00 0.00 0.00 4.17
2693 6938 3.066064 GGTGATGTGTTGTTGTAGTTGCA 59.934 43.478 0.00 0.00 0.00 4.08
2694 6939 4.035017 GTGATGTGTTGTTGTAGTTGCAC 58.965 43.478 0.00 0.00 0.00 4.57
2695 6940 2.815657 TGTGTTGTTGTAGTTGCACG 57.184 45.000 0.00 0.00 0.00 5.34
2696 6941 1.202087 TGTGTTGTTGTAGTTGCACGC 60.202 47.619 0.00 0.00 0.00 5.34
2852 9029 6.088217 CCGCGTAAAGAGATGATTATAGTGTG 59.912 42.308 4.92 0.00 0.00 3.82
3125 9327 2.498167 GGCGATGGCTGAACTAATGAT 58.502 47.619 0.00 0.00 39.81 2.45
3625 9827 1.668751 TGTTTGGAGCAACTGTTCGAC 59.331 47.619 0.00 0.00 0.00 4.20
3995 10203 2.222027 GCTGGCCATAGTTGTGGTATC 58.778 52.381 5.51 0.00 41.47 2.24
4011 10219 6.066032 TGTGGTATCTTAGTCGGTATCATGA 58.934 40.000 0.00 0.00 0.00 3.07
4032 10240 1.068127 ACTCGGAACTAGCAAACACGT 59.932 47.619 0.00 0.00 0.00 4.49
4054 10262 6.313905 ACGTTGATGTGGCAAACAATTAAAAA 59.686 30.769 0.00 0.00 43.61 1.94
4055 10263 6.845280 CGTTGATGTGGCAAACAATTAAAAAG 59.155 34.615 0.00 0.00 43.61 2.27
4175 10385 8.201554 ACTATTTTGTGATACTATGCACTGTG 57.798 34.615 2.76 2.76 36.05 3.66
4258 10468 3.034635 AGTAGCCTAAGACTGGTCATGG 58.965 50.000 3.51 3.56 0.00 3.66
4305 10515 2.472488 GCGCATTTCAAGACAAGTTTGG 59.528 45.455 0.30 0.00 0.00 3.28
4328 10538 8.298729 TGGTTATGTGGCATGTATTTAATGAA 57.701 30.769 0.00 0.00 0.00 2.57
4329 10539 8.753133 TGGTTATGTGGCATGTATTTAATGAAA 58.247 29.630 0.00 0.00 0.00 2.69
4385 10595 6.958255 ACTGTAACATAACGTAACCCAAAAC 58.042 36.000 0.00 0.00 0.00 2.43
4398 10608 7.703197 ACGTAACCCAAAACAAAATGAGTTTAG 59.297 33.333 0.00 0.00 38.17 1.85
4424 10634 9.784680 GAATCTAATAAATGCAAGCATCTATGG 57.215 33.333 8.14 2.43 35.31 2.74
4439 10649 9.547753 AAGCATCTATGGTACTACTTTTATGTG 57.452 33.333 0.00 0.00 37.57 3.21
4487 10697 5.990120 TTGACACTAGTCTAAGTTACCCC 57.010 43.478 0.00 0.00 45.20 4.95
4488 10698 4.347607 TGACACTAGTCTAAGTTACCCCC 58.652 47.826 0.00 0.00 45.20 5.40
4489 10699 4.202706 TGACACTAGTCTAAGTTACCCCCA 60.203 45.833 0.00 0.00 45.20 4.96
4490 10700 4.092279 ACACTAGTCTAAGTTACCCCCAC 58.908 47.826 0.00 0.00 0.00 4.61
4609 10821 9.304731 CACCAAATCCACATTTATGACATTTAG 57.695 33.333 0.00 0.00 30.51 1.85
4616 10828 9.941325 TCCACATTTATGACATTTAGCAAAAAT 57.059 25.926 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.713903 CCAGCAGTTTCCATATCATATGAAGT 59.286 38.462 9.99 0.00 0.00 3.01
3 4 6.005823 CCCAGCAGTTTCCATATCATATGAA 58.994 40.000 9.99 0.00 0.00 2.57
5 6 5.319453 ACCCAGCAGTTTCCATATCATATG 58.681 41.667 0.00 0.00 0.00 1.78
6 7 5.589367 ACCCAGCAGTTTCCATATCATAT 57.411 39.130 0.00 0.00 0.00 1.78
7 8 6.101150 AGTTACCCAGCAGTTTCCATATCATA 59.899 38.462 0.00 0.00 0.00 2.15
8 9 3.959495 ACCCAGCAGTTTCCATATCAT 57.041 42.857 0.00 0.00 0.00 2.45
9 10 4.227300 AGTTACCCAGCAGTTTCCATATCA 59.773 41.667 0.00 0.00 0.00 2.15
10 11 4.576463 CAGTTACCCAGCAGTTTCCATATC 59.424 45.833 0.00 0.00 0.00 1.63
11 12 4.018415 ACAGTTACCCAGCAGTTTCCATAT 60.018 41.667 0.00 0.00 0.00 1.78
12 13 3.329520 ACAGTTACCCAGCAGTTTCCATA 59.670 43.478 0.00 0.00 0.00 2.74
13 14 2.108250 ACAGTTACCCAGCAGTTTCCAT 59.892 45.455 0.00 0.00 0.00 3.41
14 15 1.493022 ACAGTTACCCAGCAGTTTCCA 59.507 47.619 0.00 0.00 0.00 3.53
15 16 2.271944 ACAGTTACCCAGCAGTTTCC 57.728 50.000 0.00 0.00 0.00 3.13
16 17 3.939592 GGATACAGTTACCCAGCAGTTTC 59.060 47.826 0.00 0.00 0.00 2.78
17 18 3.329520 TGGATACAGTTACCCAGCAGTTT 59.670 43.478 0.00 0.00 46.17 2.66
18 19 2.910319 TGGATACAGTTACCCAGCAGTT 59.090 45.455 0.00 0.00 46.17 3.16
19 20 2.546899 TGGATACAGTTACCCAGCAGT 58.453 47.619 0.00 0.00 46.17 4.40
30 31 7.364408 ACTGTATTACGGTCAATTGGATACAGT 60.364 37.037 23.64 23.64 46.61 3.55
31 32 6.984474 ACTGTATTACGGTCAATTGGATACAG 59.016 38.462 22.93 22.93 40.41 2.74
32 33 6.759356 CACTGTATTACGGTCAATTGGATACA 59.241 38.462 5.42 9.53 39.84 2.29
33 34 6.202188 CCACTGTATTACGGTCAATTGGATAC 59.798 42.308 5.42 0.00 35.04 2.24
34 35 6.126997 ACCACTGTATTACGGTCAATTGGATA 60.127 38.462 13.42 0.00 35.04 2.59
35 36 5.123227 CCACTGTATTACGGTCAATTGGAT 58.877 41.667 5.42 0.00 35.04 3.41
36 37 4.020039 ACCACTGTATTACGGTCAATTGGA 60.020 41.667 13.42 0.00 35.04 3.53
37 38 4.258543 ACCACTGTATTACGGTCAATTGG 58.741 43.478 5.42 6.52 35.04 3.16
38 39 5.391523 CCAACCACTGTATTACGGTCAATTG 60.392 44.000 5.29 9.74 35.04 2.32
39 40 4.698304 CCAACCACTGTATTACGGTCAATT 59.302 41.667 5.29 0.00 35.04 2.32
40 41 4.258543 CCAACCACTGTATTACGGTCAAT 58.741 43.478 5.29 0.00 35.04 2.57
41 42 3.557475 CCCAACCACTGTATTACGGTCAA 60.557 47.826 5.29 0.00 35.04 3.18
42 43 2.027929 CCCAACCACTGTATTACGGTCA 60.028 50.000 5.29 0.00 35.04 4.02
43 44 2.234414 TCCCAACCACTGTATTACGGTC 59.766 50.000 5.29 0.00 35.04 4.79
44 45 2.259012 TCCCAACCACTGTATTACGGT 58.741 47.619 2.31 2.31 38.46 4.83
45 46 3.553828 ATCCCAACCACTGTATTACGG 57.446 47.619 0.94 0.94 0.00 4.02
46 47 4.570772 CAGAATCCCAACCACTGTATTACG 59.429 45.833 0.00 0.00 0.00 3.18
47 48 5.741011 TCAGAATCCCAACCACTGTATTAC 58.259 41.667 0.00 0.00 0.00 1.89
48 49 5.104527 CCTCAGAATCCCAACCACTGTATTA 60.105 44.000 0.00 0.00 0.00 0.98
49 50 4.324563 CCTCAGAATCCCAACCACTGTATT 60.325 45.833 0.00 0.00 0.00 1.89
50 51 3.200825 CCTCAGAATCCCAACCACTGTAT 59.799 47.826 0.00 0.00 0.00 2.29
51 52 2.571653 CCTCAGAATCCCAACCACTGTA 59.428 50.000 0.00 0.00 0.00 2.74
52 53 1.352352 CCTCAGAATCCCAACCACTGT 59.648 52.381 0.00 0.00 0.00 3.55
53 54 1.952367 GCCTCAGAATCCCAACCACTG 60.952 57.143 0.00 0.00 0.00 3.66
54 55 0.329596 GCCTCAGAATCCCAACCACT 59.670 55.000 0.00 0.00 0.00 4.00
55 56 0.038166 TGCCTCAGAATCCCAACCAC 59.962 55.000 0.00 0.00 0.00 4.16
56 57 0.776810 TTGCCTCAGAATCCCAACCA 59.223 50.000 0.00 0.00 0.00 3.67
57 58 2.149973 ATTGCCTCAGAATCCCAACC 57.850 50.000 0.00 0.00 0.00 3.77
58 59 3.091545 TCAATTGCCTCAGAATCCCAAC 58.908 45.455 0.00 0.00 0.00 3.77
59 60 3.454719 TCAATTGCCTCAGAATCCCAA 57.545 42.857 0.00 0.00 0.00 4.12
60 61 3.454719 TTCAATTGCCTCAGAATCCCA 57.545 42.857 0.00 0.00 0.00 4.37
61 62 3.069158 CCATTCAATTGCCTCAGAATCCC 59.931 47.826 0.00 0.00 0.00 3.85
62 63 3.069158 CCCATTCAATTGCCTCAGAATCC 59.931 47.826 0.00 0.00 0.00 3.01
63 64 3.492137 GCCCATTCAATTGCCTCAGAATC 60.492 47.826 0.00 0.00 0.00 2.52
64 65 2.433239 GCCCATTCAATTGCCTCAGAAT 59.567 45.455 0.00 0.00 0.00 2.40
65 66 1.826720 GCCCATTCAATTGCCTCAGAA 59.173 47.619 0.00 0.00 0.00 3.02
66 67 1.477553 GCCCATTCAATTGCCTCAGA 58.522 50.000 0.00 0.00 0.00 3.27
67 68 0.101759 CGCCCATTCAATTGCCTCAG 59.898 55.000 0.00 0.00 0.00 3.35
68 69 0.323269 TCGCCCATTCAATTGCCTCA 60.323 50.000 0.00 0.00 0.00 3.86
69 70 0.383231 CTCGCCCATTCAATTGCCTC 59.617 55.000 0.00 0.00 0.00 4.70
70 71 0.034186 TCTCGCCCATTCAATTGCCT 60.034 50.000 0.00 0.00 0.00 4.75
71 72 1.035139 ATCTCGCCCATTCAATTGCC 58.965 50.000 0.00 0.00 0.00 4.52
72 73 2.544486 GGAATCTCGCCCATTCAATTGC 60.544 50.000 0.00 0.00 32.65 3.56
73 74 2.689471 TGGAATCTCGCCCATTCAATTG 59.311 45.455 0.00 0.00 32.65 2.32
74 75 2.954318 CTGGAATCTCGCCCATTCAATT 59.046 45.455 0.00 0.00 32.65 2.32
75 76 2.092212 ACTGGAATCTCGCCCATTCAAT 60.092 45.455 0.00 0.00 32.65 2.57
76 77 1.281867 ACTGGAATCTCGCCCATTCAA 59.718 47.619 0.00 0.00 32.65 2.69
77 78 0.911769 ACTGGAATCTCGCCCATTCA 59.088 50.000 0.00 0.00 32.65 2.57
78 79 1.303309 CACTGGAATCTCGCCCATTC 58.697 55.000 0.00 0.00 0.00 2.67
79 80 0.107017 CCACTGGAATCTCGCCCATT 60.107 55.000 0.00 0.00 0.00 3.16
80 81 1.528824 CCACTGGAATCTCGCCCAT 59.471 57.895 0.00 0.00 0.00 4.00
81 82 2.669133 CCCACTGGAATCTCGCCCA 61.669 63.158 0.00 0.00 0.00 5.36
82 83 2.190578 CCCACTGGAATCTCGCCC 59.809 66.667 0.00 0.00 0.00 6.13
83 84 2.514824 GCCCACTGGAATCTCGCC 60.515 66.667 0.00 0.00 0.00 5.54
84 85 0.106708 TATGCCCACTGGAATCTCGC 59.893 55.000 0.00 0.00 30.03 5.03
85 86 1.414181 ACTATGCCCACTGGAATCTCG 59.586 52.381 0.00 0.00 30.03 4.04
86 87 2.703007 AGACTATGCCCACTGGAATCTC 59.297 50.000 0.00 0.00 30.03 2.75
87 88 2.703007 GAGACTATGCCCACTGGAATCT 59.297 50.000 0.00 0.00 30.03 2.40
88 89 2.546795 CGAGACTATGCCCACTGGAATC 60.547 54.545 0.00 0.00 30.03 2.52
89 90 1.414181 CGAGACTATGCCCACTGGAAT 59.586 52.381 0.00 0.00 33.01 3.01
90 91 0.824109 CGAGACTATGCCCACTGGAA 59.176 55.000 0.00 0.00 0.00 3.53
91 92 1.043116 CCGAGACTATGCCCACTGGA 61.043 60.000 0.00 0.00 0.00 3.86
92 93 1.330655 ACCGAGACTATGCCCACTGG 61.331 60.000 0.00 0.00 0.00 4.00
93 94 0.179100 CACCGAGACTATGCCCACTG 60.179 60.000 0.00 0.00 0.00 3.66
94 95 0.614979 ACACCGAGACTATGCCCACT 60.615 55.000 0.00 0.00 0.00 4.00
95 96 0.460284 CACACCGAGACTATGCCCAC 60.460 60.000 0.00 0.00 0.00 4.61
96 97 1.897423 CACACCGAGACTATGCCCA 59.103 57.895 0.00 0.00 0.00 5.36
97 98 1.521681 GCACACCGAGACTATGCCC 60.522 63.158 0.00 0.00 0.00 5.36
98 99 0.528684 GAGCACACCGAGACTATGCC 60.529 60.000 0.00 0.00 36.96 4.40
99 100 0.528684 GGAGCACACCGAGACTATGC 60.529 60.000 0.00 0.00 36.52 3.14
100 101 1.107114 AGGAGCACACCGAGACTATG 58.893 55.000 0.00 0.00 34.73 2.23
101 102 2.577700 CTAGGAGCACACCGAGACTAT 58.422 52.381 0.00 0.00 35.23 2.12
102 103 1.408405 CCTAGGAGCACACCGAGACTA 60.408 57.143 1.05 0.00 35.23 2.59
103 104 0.681564 CCTAGGAGCACACCGAGACT 60.682 60.000 1.05 0.00 35.23 3.24
104 105 1.810532 CCTAGGAGCACACCGAGAC 59.189 63.158 1.05 0.00 35.23 3.36
105 106 2.052690 GCCTAGGAGCACACCGAGA 61.053 63.158 14.75 0.00 35.23 4.04
106 107 2.351244 TGCCTAGGAGCACACCGAG 61.351 63.158 14.75 0.00 38.00 4.63
107 108 2.283604 TGCCTAGGAGCACACCGA 60.284 61.111 14.75 0.00 38.00 4.69
114 115 1.587547 CTCCGAAAATGCCTAGGAGC 58.412 55.000 14.75 0.00 41.48 4.70
116 117 1.139058 GAGCTCCGAAAATGCCTAGGA 59.861 52.381 14.75 0.00 0.00 2.94
117 118 1.587547 GAGCTCCGAAAATGCCTAGG 58.412 55.000 3.67 3.67 0.00 3.02
118 119 1.139853 AGGAGCTCCGAAAATGCCTAG 59.860 52.381 26.95 0.00 42.08 3.02
119 120 1.204146 AGGAGCTCCGAAAATGCCTA 58.796 50.000 26.95 0.00 42.08 3.93
120 121 1.204146 TAGGAGCTCCGAAAATGCCT 58.796 50.000 26.95 8.84 42.08 4.75
121 122 2.147150 GATAGGAGCTCCGAAAATGCC 58.853 52.381 26.95 7.95 42.08 4.40
122 123 1.795286 CGATAGGAGCTCCGAAAATGC 59.205 52.381 26.95 12.00 42.08 3.56
123 124 3.371102 TCGATAGGAGCTCCGAAAATG 57.629 47.619 26.95 15.45 42.08 2.32
124 125 4.608948 AATCGATAGGAGCTCCGAAAAT 57.391 40.909 26.95 18.15 42.08 1.82
125 126 4.099573 AGAAATCGATAGGAGCTCCGAAAA 59.900 41.667 26.95 14.20 42.08 2.29
126 127 3.637229 AGAAATCGATAGGAGCTCCGAAA 59.363 43.478 26.95 16.75 42.08 3.46
127 128 3.223435 AGAAATCGATAGGAGCTCCGAA 58.777 45.455 26.95 19.35 42.08 4.30
128 129 2.865079 AGAAATCGATAGGAGCTCCGA 58.135 47.619 26.95 22.89 42.08 4.55
129 130 3.254657 AGAAGAAATCGATAGGAGCTCCG 59.745 47.826 26.95 15.06 42.08 4.63
130 131 4.864704 AGAAGAAATCGATAGGAGCTCC 57.135 45.455 26.22 26.22 0.00 4.70
131 132 6.084326 AGAAGAAGAAATCGATAGGAGCTC 57.916 41.667 4.71 4.71 0.00 4.09
132 133 7.775053 ATAGAAGAAGAAATCGATAGGAGCT 57.225 36.000 0.00 0.00 0.00 4.09
133 134 8.736244 AGTATAGAAGAAGAAATCGATAGGAGC 58.264 37.037 0.00 0.00 0.00 4.70
140 141 8.136165 GCCAAGTAGTATAGAAGAAGAAATCGA 58.864 37.037 0.00 0.00 0.00 3.59
141 142 7.921214 TGCCAAGTAGTATAGAAGAAGAAATCG 59.079 37.037 0.00 0.00 0.00 3.34
142 143 9.771534 ATGCCAAGTAGTATAGAAGAAGAAATC 57.228 33.333 0.00 0.00 0.00 2.17
146 147 9.815306 AGATATGCCAAGTAGTATAGAAGAAGA 57.185 33.333 0.00 0.00 0.00 2.87
148 149 9.815306 AGAGATATGCCAAGTAGTATAGAAGAA 57.185 33.333 0.00 0.00 0.00 2.52
154 155 8.098912 TGTCGTAGAGATATGCCAAGTAGTATA 58.901 37.037 0.00 0.00 36.95 1.47
160 161 4.402793 ACTTGTCGTAGAGATATGCCAAGT 59.597 41.667 0.00 0.00 36.77 3.16
211 1128 6.156748 TCTGTAGCTACTGTGACAGAAAAA 57.843 37.500 23.84 0.76 43.97 1.94
218 1135 9.582431 TGTTAATAAATCTGTAGCTACTGTGAC 57.418 33.333 23.84 13.06 0.00 3.67
242 1159 9.816354 AACATTGCATTTTCTTACTTTTAGTGT 57.184 25.926 0.00 0.00 0.00 3.55
266 1191 8.896320 ATAAACCCCTGTGTTAAATTTTCAAC 57.104 30.769 0.00 0.00 0.00 3.18
270 1196 7.865530 AGGATAAACCCCTGTGTTAAATTTT 57.134 32.000 0.00 0.00 40.05 1.82
383 3066 1.765161 GCGCTGTGATATGCTTCGCA 61.765 55.000 0.00 0.00 44.86 5.10
405 3095 8.995220 GCCCAGATCACAACGTATTTTATAATA 58.005 33.333 0.00 0.00 0.00 0.98
412 3112 2.365582 GGCCCAGATCACAACGTATTT 58.634 47.619 0.00 0.00 0.00 1.40
428 3387 2.154462 CATAAATCTGACATCCGGCCC 58.846 52.381 0.00 0.00 0.00 5.80
434 3393 8.908786 TTGGGTAGAATCATAAATCTGACATC 57.091 34.615 0.00 0.00 0.00 3.06
503 3484 2.436417 TGCTTGCTGGGACAATAAGTC 58.564 47.619 0.00 0.00 46.83 3.01
528 3510 6.372937 TCTTCATGTCTCACTAGTCACTACAG 59.627 42.308 0.00 0.00 0.00 2.74
546 3532 8.761497 TCGTAAAGTTTCTGTTTACTCTTCATG 58.239 33.333 0.00 0.00 37.95 3.07
573 3562 6.706270 CGTGATATATAACCAAAGCAGAAGGT 59.294 38.462 0.00 0.00 37.20 3.50
588 3577 8.459635 GGAGTGACTAATCAAGCGTGATATATA 58.540 37.037 15.69 4.18 44.02 0.86
589 3578 7.316640 GGAGTGACTAATCAAGCGTGATATAT 58.683 38.462 15.69 3.16 44.02 0.86
590 3579 6.294564 GGGAGTGACTAATCAAGCGTGATATA 60.295 42.308 15.69 9.27 44.02 0.86
591 3580 5.509840 GGGAGTGACTAATCAAGCGTGATAT 60.510 44.000 15.69 8.66 44.02 1.63
614 3603 0.108138 CCTAGCTTGACGTTGAGGGG 60.108 60.000 0.00 0.00 0.00 4.79
649 3638 5.365895 ACTTAATTACTTCCTACCATCCGCT 59.634 40.000 0.00 0.00 0.00 5.52
652 3641 5.695363 GCGACTTAATTACTTCCTACCATCC 59.305 44.000 0.00 0.00 0.00 3.51
723 3712 5.354234 ACAAACGGAGGCAGTAATATTCAAG 59.646 40.000 0.00 0.00 0.00 3.02
734 3723 4.454504 ACAAGTAATTACAAACGGAGGCAG 59.545 41.667 17.65 0.00 0.00 4.85
736 3725 4.453136 TGACAAGTAATTACAAACGGAGGC 59.547 41.667 17.65 2.39 0.00 4.70
737 3726 5.467399 TGTGACAAGTAATTACAAACGGAGG 59.533 40.000 17.65 1.00 0.00 4.30
738 3727 6.422701 TCTGTGACAAGTAATTACAAACGGAG 59.577 38.462 17.65 5.50 0.00 4.63
740 3729 6.533819 TCTGTGACAAGTAATTACAAACGG 57.466 37.500 17.65 11.79 0.00 4.44
784 3773 8.673711 CGGAAATGGATGTATCAAGAACTAAAA 58.326 33.333 0.00 0.00 0.00 1.52
786 3775 7.561251 TCGGAAATGGATGTATCAAGAACTAA 58.439 34.615 0.00 0.00 0.00 2.24
787 3776 7.069455 TCTCGGAAATGGATGTATCAAGAACTA 59.931 37.037 0.00 0.00 0.00 2.24
788 3777 5.989477 TCGGAAATGGATGTATCAAGAACT 58.011 37.500 0.00 0.00 0.00 3.01
789 3778 6.018669 GTCTCGGAAATGGATGTATCAAGAAC 60.019 42.308 0.00 0.00 0.00 3.01
790 3779 6.049149 GTCTCGGAAATGGATGTATCAAGAA 58.951 40.000 0.00 0.00 0.00 2.52
791 3780 5.128663 TGTCTCGGAAATGGATGTATCAAGA 59.871 40.000 0.00 0.00 0.00 3.02
792 3781 5.359756 TGTCTCGGAAATGGATGTATCAAG 58.640 41.667 0.00 0.00 0.00 3.02
793 3782 5.351948 TGTCTCGGAAATGGATGTATCAA 57.648 39.130 0.00 0.00 0.00 2.57
794 3783 5.351948 TTGTCTCGGAAATGGATGTATCA 57.648 39.130 0.00 0.00 0.00 2.15
795 3784 6.867662 ATTTGTCTCGGAAATGGATGTATC 57.132 37.500 0.00 0.00 0.00 2.24
796 3785 8.924511 ATTATTTGTCTCGGAAATGGATGTAT 57.075 30.769 0.00 0.00 0.00 2.29
797 3786 8.746052 AATTATTTGTCTCGGAAATGGATGTA 57.254 30.769 0.00 0.00 0.00 2.29
798 3787 7.201821 GGAATTATTTGTCTCGGAAATGGATGT 60.202 37.037 0.00 0.00 0.00 3.06
799 3788 7.141363 GGAATTATTTGTCTCGGAAATGGATG 58.859 38.462 0.00 0.00 0.00 3.51
800 3789 6.017109 CGGAATTATTTGTCTCGGAAATGGAT 60.017 38.462 0.00 0.00 0.00 3.41
801 3790 5.295787 CGGAATTATTTGTCTCGGAAATGGA 59.704 40.000 0.00 0.00 0.00 3.41
802 3791 5.295787 TCGGAATTATTTGTCTCGGAAATGG 59.704 40.000 0.00 0.00 0.00 3.16
803 3792 6.358118 TCGGAATTATTTGTCTCGGAAATG 57.642 37.500 0.00 0.00 0.00 2.32
804 3793 6.456449 CGTTCGGAATTATTTGTCTCGGAAAT 60.456 38.462 0.00 0.00 31.52 2.17
805 3794 5.163933 CGTTCGGAATTATTTGTCTCGGAAA 60.164 40.000 0.00 0.00 31.52 3.13
806 3795 4.327898 CGTTCGGAATTATTTGTCTCGGAA 59.672 41.667 0.00 0.00 0.00 4.30
807 3796 3.861113 CGTTCGGAATTATTTGTCTCGGA 59.139 43.478 0.00 0.00 0.00 4.55
808 3797 3.000925 CCGTTCGGAATTATTTGTCTCGG 59.999 47.826 5.19 0.00 0.00 4.63
809 3798 3.861113 TCCGTTCGGAATTATTTGTCTCG 59.139 43.478 11.66 0.00 0.00 4.04
810 3799 4.270325 CCTCCGTTCGGAATTATTTGTCTC 59.730 45.833 14.79 0.00 33.41 3.36
811 3800 4.189231 CCTCCGTTCGGAATTATTTGTCT 58.811 43.478 14.79 0.00 33.41 3.41
812 3801 3.311596 CCCTCCGTTCGGAATTATTTGTC 59.688 47.826 14.79 0.00 33.41 3.18
813 3802 3.054948 TCCCTCCGTTCGGAATTATTTGT 60.055 43.478 14.79 0.00 33.41 2.83
814 3803 3.537580 TCCCTCCGTTCGGAATTATTTG 58.462 45.455 14.79 1.97 33.41 2.32
815 3804 3.199289 ACTCCCTCCGTTCGGAATTATTT 59.801 43.478 14.79 0.00 33.41 1.40
816 3805 2.770232 ACTCCCTCCGTTCGGAATTATT 59.230 45.455 14.79 0.00 33.41 1.40
817 3806 2.395619 ACTCCCTCCGTTCGGAATTAT 58.604 47.619 14.79 0.00 33.41 1.28
818 3807 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
819 3808 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
820 3809 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
821 3810 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
822 3811 0.679002 CAGTACTCCCTCCGTTCGGA 60.679 60.000 13.34 13.34 0.00 4.55
823 3812 0.964358 ACAGTACTCCCTCCGTTCGG 60.964 60.000 4.74 4.74 0.00 4.30
824 3813 1.399791 GTACAGTACTCCCTCCGTTCG 59.600 57.143 3.19 0.00 0.00 3.95
825 3814 2.440409 TGTACAGTACTCCCTCCGTTC 58.560 52.381 12.07 0.00 0.00 3.95
826 3815 2.592102 TGTACAGTACTCCCTCCGTT 57.408 50.000 12.07 0.00 0.00 4.44
827 3816 2.291411 ACATGTACAGTACTCCCTCCGT 60.291 50.000 12.07 0.00 0.00 4.69
828 3817 2.376109 ACATGTACAGTACTCCCTCCG 58.624 52.381 12.07 0.00 0.00 4.63
829 3818 3.679083 GCAACATGTACAGTACTCCCTCC 60.679 52.174 12.07 0.00 0.00 4.30
830 3819 3.522553 GCAACATGTACAGTACTCCCTC 58.477 50.000 12.07 0.00 0.00 4.30
831 3820 2.236395 GGCAACATGTACAGTACTCCCT 59.764 50.000 12.07 0.00 0.00 4.20
832 3821 2.236395 AGGCAACATGTACAGTACTCCC 59.764 50.000 12.07 0.00 41.41 4.30
833 3822 3.611766 AGGCAACATGTACAGTACTCC 57.388 47.619 12.07 0.00 41.41 3.85
834 3823 7.611213 ATTAAAGGCAACATGTACAGTACTC 57.389 36.000 12.07 0.00 41.41 2.59
835 3824 7.996098 AATTAAAGGCAACATGTACAGTACT 57.004 32.000 12.07 0.00 41.41 2.73
836 3825 7.540745 CCAAATTAAAGGCAACATGTACAGTAC 59.459 37.037 0.00 3.49 41.41 2.73
837 3826 7.231722 ACCAAATTAAAGGCAACATGTACAGTA 59.768 33.333 0.00 0.00 41.41 2.74
838 3827 6.041523 ACCAAATTAAAGGCAACATGTACAGT 59.958 34.615 0.00 0.00 41.41 3.55
883 3878 3.884895 TGCGATTGTGGTGGATAGAAAT 58.115 40.909 0.00 0.00 0.00 2.17
890 3885 1.381522 CATGATGCGATTGTGGTGGA 58.618 50.000 0.00 0.00 0.00 4.02
940 4962 6.851837 CGTACTGCACATACTTGTAGTAGATC 59.148 42.308 1.85 0.00 42.96 2.75
941 4963 6.318144 ACGTACTGCACATACTTGTAGTAGAT 59.682 38.462 1.85 0.00 42.96 1.98
949 4976 2.787723 GCACGTACTGCACATACTTG 57.212 50.000 11.05 5.80 46.29 3.16
965 4992 3.749064 TGAGGGAGAGACGCGCAC 61.749 66.667 5.73 0.00 36.50 5.34
972 4999 1.258445 GGGCGAAAGTGAGGGAGAGA 61.258 60.000 0.00 0.00 0.00 3.10
974 5001 0.836400 AAGGGCGAAAGTGAGGGAGA 60.836 55.000 0.00 0.00 0.00 3.71
975 5002 0.391793 GAAGGGCGAAAGTGAGGGAG 60.392 60.000 0.00 0.00 0.00 4.30
976 5003 1.677552 GAAGGGCGAAAGTGAGGGA 59.322 57.895 0.00 0.00 0.00 4.20
977 5004 1.377333 GGAAGGGCGAAAGTGAGGG 60.377 63.158 0.00 0.00 0.00 4.30
978 5005 0.391793 GAGGAAGGGCGAAAGTGAGG 60.392 60.000 0.00 0.00 0.00 3.86
979 5006 0.321671 TGAGGAAGGGCGAAAGTGAG 59.678 55.000 0.00 0.00 0.00 3.51
980 5007 0.984230 ATGAGGAAGGGCGAAAGTGA 59.016 50.000 0.00 0.00 0.00 3.41
981 5008 2.691409 TATGAGGAAGGGCGAAAGTG 57.309 50.000 0.00 0.00 0.00 3.16
985 5012 1.694150 CTCCATATGAGGAAGGGCGAA 59.306 52.381 3.65 0.00 37.20 4.70
1006 5043 5.242393 GGTAGTAATATGGGAGCGTGAAGTA 59.758 44.000 0.00 0.00 0.00 2.24
1023 5060 2.101917 GCATAGGCCGAAGTGGTAGTAA 59.898 50.000 0.00 0.00 41.21 2.24
1054 5094 1.964223 GACGCCATGGAAGAGGATAGA 59.036 52.381 18.40 0.00 0.00 1.98
1219 5271 2.737180 CTCGCATACCCGGAGCAT 59.263 61.111 0.73 0.00 0.00 3.79
1302 5354 1.518792 GGTTAGCCGCTCCGAGAAC 60.519 63.158 0.00 0.00 0.00 3.01
1610 5671 1.743855 GACGATCTTCAGGAACGCGC 61.744 60.000 5.73 0.00 42.68 6.86
1775 5842 2.206536 CCCATCCTCCTCTCCTCGC 61.207 68.421 0.00 0.00 0.00 5.03
1800 5867 1.212229 GTCCTGTTCGTCGTCTCCC 59.788 63.158 0.00 0.00 0.00 4.30
1849 5928 1.202031 GGAAACTCGCGTATTGCCTTG 60.202 52.381 5.77 0.00 42.08 3.61
2076 6220 6.843069 AAAACGGACTGATGAAAATTTTGG 57.157 33.333 8.47 0.00 0.00 3.28
2104 6270 2.095768 CGCAATTTGCTTTCTCTCGGAA 60.096 45.455 18.57 0.00 42.25 4.30
2106 6272 1.197721 ACGCAATTTGCTTTCTCTCGG 59.802 47.619 18.57 3.12 42.25 4.63
2115 6281 4.701956 AAGCTAATGTACGCAATTTGCT 57.298 36.364 18.57 8.78 42.25 3.91
2129 6295 9.490379 CTAATTTCTACCGTCCATAAAGCTAAT 57.510 33.333 0.00 0.00 0.00 1.73
2140 6306 4.874396 CCTTCCAACTAATTTCTACCGTCC 59.126 45.833 0.00 0.00 0.00 4.79
2337 6506 6.451292 ACGGAAGGGTCTTCTCTAGATATA 57.549 41.667 7.47 0.00 34.79 0.86
2339 6508 4.792513 ACGGAAGGGTCTTCTCTAGATA 57.207 45.455 7.47 0.00 34.79 1.98
2579 6820 6.547880 TGGCCATAGAGTAAAACAAAACAAGA 59.452 34.615 0.00 0.00 0.00 3.02
2580 6821 6.744112 TGGCCATAGAGTAAAACAAAACAAG 58.256 36.000 0.00 0.00 0.00 3.16
2581 6822 6.716934 TGGCCATAGAGTAAAACAAAACAA 57.283 33.333 0.00 0.00 0.00 2.83
2582 6823 6.508777 GTTGGCCATAGAGTAAAACAAAACA 58.491 36.000 6.09 0.00 0.00 2.83
2583 6824 5.627780 CGTTGGCCATAGAGTAAAACAAAAC 59.372 40.000 6.09 0.00 0.00 2.43
2660 6902 0.958091 CACATCACCCCGCAAAAGAA 59.042 50.000 0.00 0.00 0.00 2.52
2661 6903 0.179004 ACACATCACCCCGCAAAAGA 60.179 50.000 0.00 0.00 0.00 2.52
2662 6904 0.673437 AACACATCACCCCGCAAAAG 59.327 50.000 0.00 0.00 0.00 2.27
2663 6905 0.387202 CAACACATCACCCCGCAAAA 59.613 50.000 0.00 0.00 0.00 2.44
2666 6908 1.152860 AACAACACATCACCCCGCA 60.153 52.632 0.00 0.00 0.00 5.69
2667 6909 1.285641 CAACAACACATCACCCCGC 59.714 57.895 0.00 0.00 0.00 6.13
2669 6911 2.858745 ACTACAACAACACATCACCCC 58.141 47.619 0.00 0.00 0.00 4.95
2671 6913 3.066064 TGCAACTACAACAACACATCACC 59.934 43.478 0.00 0.00 0.00 4.02
2672 6914 4.035017 GTGCAACTACAACAACACATCAC 58.965 43.478 0.00 0.00 0.00 3.06
2673 6915 3.242576 CGTGCAACTACAACAACACATCA 60.243 43.478 0.00 0.00 31.75 3.07
2681 6926 0.026933 CAACGCGTGCAACTACAACA 59.973 50.000 14.98 0.00 31.75 3.33
2692 6937 1.154599 GTCAGTCATGCAACGCGTG 60.155 57.895 14.98 8.57 45.79 5.34
2693 6938 2.657757 CGTCAGTCATGCAACGCGT 61.658 57.895 5.58 5.58 0.00 6.01
2694 6939 2.094539 CGTCAGTCATGCAACGCG 59.905 61.111 3.53 3.53 0.00 6.01
2695 6940 2.317609 ACCGTCAGTCATGCAACGC 61.318 57.895 0.87 0.00 33.95 4.84
2696 6941 0.943835 TCACCGTCAGTCATGCAACG 60.944 55.000 0.00 0.00 35.01 4.10
2912 9089 4.695455 ACATAACGTGACTTGAATGGGAAG 59.305 41.667 0.00 0.00 0.00 3.46
3068 9270 2.591429 TGGTGTCAAGTGCCGCAG 60.591 61.111 0.00 0.00 0.00 5.18
3125 9327 1.948611 GCCGCATGACTCTTGGGTTTA 60.949 52.381 0.00 0.00 0.00 2.01
3625 9827 2.208431 CAGAAATAGCTCAGCCTTCCG 58.792 52.381 0.00 0.00 0.00 4.30
3995 10203 4.275196 TCCGAGTTCATGATACCGACTAAG 59.725 45.833 0.00 0.00 0.00 2.18
4011 10219 2.132762 CGTGTTTGCTAGTTCCGAGTT 58.867 47.619 0.00 0.00 0.00 3.01
4032 10240 7.050377 TCCTTTTTAATTGTTTGCCACATCAA 58.950 30.769 0.00 0.00 34.43 2.57
4054 10262 8.013667 ACCTATGTTATTCTAACCATCTCTCCT 58.986 37.037 0.00 0.00 0.00 3.69
4055 10263 8.196378 ACCTATGTTATTCTAACCATCTCTCC 57.804 38.462 0.00 0.00 0.00 3.71
4104 10314 4.374399 TCATGCATGACACATAGTAGCAG 58.626 43.478 25.42 0.00 36.48 4.24
4158 10368 7.429633 ACTATCTTCACAGTGCATAGTATCAC 58.570 38.462 13.88 5.19 30.15 3.06
4285 10495 3.705604 ACCAAACTTGTCTTGAAATGCG 58.294 40.909 0.00 0.00 0.00 4.73
4291 10501 4.037446 GCCACATAACCAAACTTGTCTTGA 59.963 41.667 0.00 0.00 0.00 3.02
4374 10584 9.589111 TTCTAAACTCATTTTGTTTTGGGTTAC 57.411 29.630 0.00 0.00 35.53 2.50
4398 10608 9.784680 CCATAGATGCTTGCATTTATTAGATTC 57.215 33.333 13.65 0.00 0.00 2.52
4480 10690 4.544683 AGACTAGTCATAGTGGGGGTAAC 58.455 47.826 24.44 0.00 42.46 2.50
4481 10691 4.894252 AGACTAGTCATAGTGGGGGTAA 57.106 45.455 24.44 0.00 42.46 2.85
4482 10692 5.194334 TGTTAGACTAGTCATAGTGGGGGTA 59.806 44.000 24.44 1.61 42.46 3.69
4484 10694 4.341520 GTGTTAGACTAGTCATAGTGGGGG 59.658 50.000 24.44 0.00 42.46 5.40
4485 10695 4.954202 TGTGTTAGACTAGTCATAGTGGGG 59.046 45.833 24.44 0.00 42.46 4.96
4486 10696 6.547880 AGATGTGTTAGACTAGTCATAGTGGG 59.452 42.308 24.44 0.00 42.46 4.61
4487 10697 7.575414 AGATGTGTTAGACTAGTCATAGTGG 57.425 40.000 24.44 0.00 42.46 4.00
4488 10698 8.561212 GGTAGATGTGTTAGACTAGTCATAGTG 58.439 40.741 24.44 0.00 42.46 2.74
4489 10699 8.272889 TGGTAGATGTGTTAGACTAGTCATAGT 58.727 37.037 24.44 6.62 45.16 2.12
4490 10700 8.678593 TGGTAGATGTGTTAGACTAGTCATAG 57.321 38.462 24.44 0.00 34.96 2.23
4546 10758 1.134699 TCGATGCAGACATTGGGAGAC 60.135 52.381 0.00 0.00 38.13 3.36
4609 10821 8.951243 AGAGAAGAGTTCACCTTATATTTTTGC 58.049 33.333 0.00 0.00 0.00 3.68
4617 10829 9.041354 AGTGAATAAGAGAAGAGTTCACCTTAT 57.959 33.333 11.58 0.00 45.93 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.