Multiple sequence alignment - TraesCS6D01G303100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G303100 chr6D 100.000 4063 0 0 1 4063 411809993 411814055 0.000000e+00 7504
1 TraesCS6D01G303100 chr6D 87.209 258 30 3 3806 4063 421471264 421471518 1.430000e-74 291
2 TraesCS6D01G303100 chr6A 85.698 2615 154 87 965 3451 556760832 556763354 0.000000e+00 2555
3 TraesCS6D01G303100 chr6A 86.233 523 22 19 418 917 556759931 556760426 4.650000e-144 521
4 TraesCS6D01G303100 chr6A 85.405 370 44 9 3437 3804 556763524 556763885 3.830000e-100 375
5 TraesCS6D01G303100 chr6A 85.217 115 15 2 3691 3804 556864636 556864749 2.570000e-22 117
6 TraesCS6D01G303100 chr6B 89.102 2083 90 49 383 2407 619718743 619720746 0.000000e+00 2462
7 TraesCS6D01G303100 chr6B 92.903 944 46 7 2417 3344 619720816 619721754 0.000000e+00 1352
8 TraesCS6D01G303100 chr6B 92.958 426 28 2 3380 3804 619721756 619722180 1.600000e-173 619
9 TraesCS6D01G303100 chr6B 92.636 258 17 2 3806 4063 694661055 694661310 1.780000e-98 370
10 TraesCS6D01G303100 chr6B 88.449 303 22 7 6 300 619718415 619718712 1.800000e-93 353
11 TraesCS6D01G303100 chr7D 93.130 262 17 1 3802 4063 65598806 65598546 2.290000e-102 383
12 TraesCS6D01G303100 chr7D 89.961 259 23 2 3806 4063 150502803 150503059 8.420000e-87 331
13 TraesCS6D01G303100 chr7D 93.243 148 6 2 2628 2774 118873689 118873833 8.840000e-52 215
14 TraesCS6D01G303100 chrUn 91.473 258 20 2 3807 4063 37075499 37075755 1.800000e-93 353
15 TraesCS6D01G303100 chr4A 88.583 254 27 1 3806 4059 211389220 211389471 1.420000e-79 307
16 TraesCS6D01G303100 chr7A 88.189 254 27 3 3806 4059 33879017 33879267 2.370000e-77 300
17 TraesCS6D01G303100 chr7A 91.216 148 9 2 2628 2774 122914868 122915012 8.910000e-47 198
18 TraesCS6D01G303100 chr1A 91.827 208 16 1 3852 4059 574301338 574301132 5.140000e-74 289
19 TraesCS6D01G303100 chr3A 86.522 230 30 1 10 239 83392674 83392902 6.740000e-63 252
20 TraesCS6D01G303100 chr3D 92.414 145 10 1 3920 4063 589416551 589416407 5.320000e-49 206
21 TraesCS6D01G303100 chr3D 87.970 133 11 2 3807 3939 589416798 589416671 7.030000e-33 152
22 TraesCS6D01G303100 chr7B 91.216 148 9 3 2628 2774 79734028 79734172 8.910000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G303100 chr6D 411809993 411814055 4062 False 7504.000000 7504 100.000000 1 4063 1 chr6D.!!$F1 4062
1 TraesCS6D01G303100 chr6A 556759931 556763885 3954 False 1150.333333 2555 85.778667 418 3804 3 chr6A.!!$F2 3386
2 TraesCS6D01G303100 chr6B 619718415 619722180 3765 False 1196.500000 2462 90.853000 6 3804 4 chr6B.!!$F2 3798

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 284 0.178924 AATGCAAAGGGCCAAGAGGT 60.179 50.0 6.18 0.0 43.89 3.85 F
1194 1622 0.325933 TCGAGTCGGAGGTGGAGTTA 59.674 55.0 13.54 0.0 0.00 2.24 F
1840 2336 0.043334 ACCAGCCCAGTAGACTCCAT 59.957 55.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 2317 0.043334 ATGGAGTCTACTGGGCTGGT 59.957 55.0 0.00 0.00 0.00 4.00 R
2559 3162 0.675837 ATGACGAGACGTTCTCCGGA 60.676 55.0 2.93 2.93 41.37 5.14 R
3807 4637 0.960861 GCCGGCTGAAGGTAAGCTTT 60.961 55.0 22.15 0.00 40.64 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.687941 ATGTCGTATTTGAAATTCCACTTCT 57.312 32.000 0.00 0.00 0.00 2.85
166 167 7.596749 ACTTCTGTTCCATACAACTAAATCG 57.403 36.000 0.00 0.00 36.02 3.34
170 174 6.695713 TCTGTTCCATACAACTAAATCGATCG 59.304 38.462 9.36 9.36 36.02 3.69
183 187 8.299262 ACTAAATCGATCGAAATACATTCCAG 57.701 34.615 23.50 12.81 34.34 3.86
196 200 3.350833 ACATTCCAGCCAATCTTCACTC 58.649 45.455 0.00 0.00 0.00 3.51
198 202 3.340814 TTCCAGCCAATCTTCACTCTC 57.659 47.619 0.00 0.00 0.00 3.20
252 256 6.639632 AACCATAGATAAATGTGTGCATCC 57.360 37.500 0.00 0.00 33.50 3.51
270 274 1.193462 CCCAGAATGCAAAGGGCCAA 61.193 55.000 6.18 0.00 43.89 4.52
275 284 0.178924 AATGCAAAGGGCCAAGAGGT 60.179 50.000 6.18 0.00 43.89 3.85
279 288 0.681175 CAAAGGGCCAAGAGGTTTGG 59.319 55.000 6.18 1.59 42.37 3.28
286 295 2.238521 GCCAAGAGGTTTGGACATTCA 58.761 47.619 9.99 0.00 42.06 2.57
293 302 2.812011 AGGTTTGGACATTCACGTAAGC 59.188 45.455 0.00 0.00 45.62 3.09
309 318 3.127548 CGTAAGCGTTACTCCCTCTGTAA 59.872 47.826 6.41 0.00 33.98 2.41
310 319 4.379813 CGTAAGCGTTACTCCCTCTGTAAA 60.380 45.833 6.41 0.00 33.98 2.01
311 320 4.820894 AAGCGTTACTCCCTCTGTAAAT 57.179 40.909 0.00 0.00 32.58 1.40
312 321 4.820894 AGCGTTACTCCCTCTGTAAATT 57.179 40.909 0.00 0.00 32.58 1.82
313 322 5.161943 AGCGTTACTCCCTCTGTAAATTT 57.838 39.130 0.00 0.00 32.58 1.82
314 323 5.557866 AGCGTTACTCCCTCTGTAAATTTT 58.442 37.500 0.00 0.00 32.58 1.82
315 324 6.002082 AGCGTTACTCCCTCTGTAAATTTTT 58.998 36.000 0.00 0.00 32.58 1.94
316 325 6.148976 AGCGTTACTCCCTCTGTAAATTTTTC 59.851 38.462 0.00 0.00 32.58 2.29
317 326 6.148976 GCGTTACTCCCTCTGTAAATTTTTCT 59.851 38.462 0.00 0.00 32.58 2.52
318 327 7.308408 GCGTTACTCCCTCTGTAAATTTTTCTT 60.308 37.037 0.00 0.00 32.58 2.52
319 328 8.565416 CGTTACTCCCTCTGTAAATTTTTCTTT 58.435 33.333 0.00 0.00 32.58 2.52
345 354 5.941948 AAAAACGTTTAGATCAGTGAGGG 57.058 39.130 15.03 0.00 0.00 4.30
346 355 4.884668 AAACGTTTAGATCAGTGAGGGA 57.115 40.909 12.83 0.00 0.00 4.20
347 356 4.457834 AACGTTTAGATCAGTGAGGGAG 57.542 45.455 0.00 0.00 0.00 4.30
348 357 3.432378 ACGTTTAGATCAGTGAGGGAGT 58.568 45.455 0.00 0.00 0.00 3.85
349 358 4.597004 ACGTTTAGATCAGTGAGGGAGTA 58.403 43.478 0.00 0.00 0.00 2.59
350 359 4.641094 ACGTTTAGATCAGTGAGGGAGTAG 59.359 45.833 0.00 0.00 0.00 2.57
351 360 4.641094 CGTTTAGATCAGTGAGGGAGTAGT 59.359 45.833 0.00 0.00 0.00 2.73
352 361 5.449314 CGTTTAGATCAGTGAGGGAGTAGTG 60.449 48.000 0.00 0.00 0.00 2.74
353 362 2.383855 AGATCAGTGAGGGAGTAGTGC 58.616 52.381 0.00 0.00 0.00 4.40
354 363 2.103373 GATCAGTGAGGGAGTAGTGCA 58.897 52.381 0.00 0.00 0.00 4.57
355 364 2.238084 TCAGTGAGGGAGTAGTGCAT 57.762 50.000 0.00 0.00 0.00 3.96
356 365 1.827344 TCAGTGAGGGAGTAGTGCATG 59.173 52.381 0.00 0.00 0.00 4.06
357 366 1.827344 CAGTGAGGGAGTAGTGCATGA 59.173 52.381 0.00 0.00 0.00 3.07
358 367 1.827969 AGTGAGGGAGTAGTGCATGAC 59.172 52.381 0.00 0.00 0.00 3.06
359 368 0.817654 TGAGGGAGTAGTGCATGACG 59.182 55.000 0.00 0.00 0.00 4.35
360 369 1.103803 GAGGGAGTAGTGCATGACGA 58.896 55.000 0.00 0.00 0.00 4.20
361 370 1.683917 GAGGGAGTAGTGCATGACGAT 59.316 52.381 0.00 0.00 0.00 3.73
362 371 1.410517 AGGGAGTAGTGCATGACGATG 59.589 52.381 0.00 0.00 0.00 3.84
363 372 1.409064 GGGAGTAGTGCATGACGATGA 59.591 52.381 0.00 0.00 0.00 2.92
414 426 2.189257 TGCACCACTCTTGCACGT 59.811 55.556 0.00 0.00 45.06 4.49
415 427 1.443828 TGCACCACTCTTGCACGTA 59.556 52.632 0.00 0.00 45.06 3.57
416 428 0.878523 TGCACCACTCTTGCACGTAC 60.879 55.000 0.00 0.00 45.06 3.67
476 488 2.121786 CGTACATACATACGTGCACCC 58.878 52.381 12.15 0.00 42.37 4.61
491 503 0.603707 CACCCTGTGACAATGCGTCT 60.604 55.000 0.00 0.00 45.60 4.18
505 517 2.992593 TGCGTCTCATCTAGTCACTCT 58.007 47.619 0.00 0.00 0.00 3.24
515 527 6.003326 TCATCTAGTCACTCTGATCTGATCC 58.997 44.000 14.71 0.00 0.00 3.36
545 568 4.877773 TCCTCTCCAGCTAGAAGAAGAAT 58.122 43.478 0.00 0.00 0.00 2.40
558 581 0.449388 GAAGAATCCTGCAAGCCACG 59.551 55.000 0.00 0.00 0.00 4.94
566 589 3.058160 GCAAGCCACGCTCACCAT 61.058 61.111 0.00 0.00 38.25 3.55
616 641 0.389426 CCCCGTATACGTAGGCATGC 60.389 60.000 22.87 9.90 37.74 4.06
650 675 2.206182 GATACCACCAAACCCCGCCT 62.206 60.000 0.00 0.00 0.00 5.52
723 748 1.846712 TTGCATCCATCGACACCCCA 61.847 55.000 0.00 0.00 0.00 4.96
724 749 1.819632 GCATCCATCGACACCCCAC 60.820 63.158 0.00 0.00 0.00 4.61
725 750 1.153168 CATCCATCGACACCCCACC 60.153 63.158 0.00 0.00 0.00 4.61
726 751 2.375345 ATCCATCGACACCCCACCC 61.375 63.158 0.00 0.00 0.00 4.61
727 752 4.109675 CCATCGACACCCCACCCC 62.110 72.222 0.00 0.00 0.00 4.95
728 753 3.326578 CATCGACACCCCACCCCA 61.327 66.667 0.00 0.00 0.00 4.96
729 754 3.327404 ATCGACACCCCACCCCAC 61.327 66.667 0.00 0.00 0.00 4.61
780 805 2.272471 CTTCCGCCCCTTTCCTCC 59.728 66.667 0.00 0.00 0.00 4.30
851 884 4.792804 GCTGCTGCACTCCCTCCC 62.793 72.222 11.11 0.00 39.41 4.30
1134 1556 4.385405 GAGCGACACTGGCTGCCT 62.385 66.667 21.03 0.00 41.72 4.75
1194 1622 0.325933 TCGAGTCGGAGGTGGAGTTA 59.674 55.000 13.54 0.00 0.00 2.24
1331 1784 6.259608 TCGTTCCAATCTGTACTACTAGTAGC 59.740 42.308 26.54 13.81 36.66 3.58
1378 1836 0.464916 ACCCGGATTAATTCGCCACC 60.465 55.000 10.84 0.00 0.00 4.61
1762 2258 2.161855 CCCTGCTGTTTTACATGCAGA 58.838 47.619 21.72 0.00 44.99 4.26
1763 2259 2.756760 CCCTGCTGTTTTACATGCAGAT 59.243 45.455 21.72 0.00 44.99 2.90
1764 2260 3.428452 CCCTGCTGTTTTACATGCAGATG 60.428 47.826 21.72 13.79 44.99 2.90
1765 2261 3.176708 CTGCTGTTTTACATGCAGATGC 58.823 45.455 18.16 0.00 44.99 3.91
1812 2308 4.152625 GCTCGGCACATGACACGC 62.153 66.667 0.00 0.00 0.00 5.34
1813 2309 2.738139 CTCGGCACATGACACGCA 60.738 61.111 0.00 0.00 0.00 5.24
1814 2310 3.015293 CTCGGCACATGACACGCAC 62.015 63.158 0.00 0.00 0.00 5.34
1815 2311 4.088762 CGGCACATGACACGCACC 62.089 66.667 0.00 0.00 0.00 5.01
1816 2312 2.977456 GGCACATGACACGCACCA 60.977 61.111 0.00 0.00 0.00 4.17
1817 2313 2.252260 GCACATGACACGCACCAC 59.748 61.111 0.00 0.00 0.00 4.16
1836 2332 3.393360 GCACCAGCCCAGTAGACT 58.607 61.111 0.00 0.00 33.58 3.24
1837 2333 1.219393 GCACCAGCCCAGTAGACTC 59.781 63.158 0.00 0.00 33.58 3.36
1840 2336 0.043334 ACCAGCCCAGTAGACTCCAT 59.957 55.000 0.00 0.00 0.00 3.41
1848 2344 3.099905 CCAGTAGACTCCATCACTCCAA 58.900 50.000 0.00 0.00 0.00 3.53
1863 2359 7.416664 CCATCACTCCAACCCATTTTAATACTG 60.417 40.741 0.00 0.00 0.00 2.74
1864 2360 6.548321 TCACTCCAACCCATTTTAATACTGT 58.452 36.000 0.00 0.00 0.00 3.55
1865 2361 6.657541 TCACTCCAACCCATTTTAATACTGTC 59.342 38.462 0.00 0.00 0.00 3.51
1866 2362 6.659242 CACTCCAACCCATTTTAATACTGTCT 59.341 38.462 0.00 0.00 0.00 3.41
1867 2363 6.884836 ACTCCAACCCATTTTAATACTGTCTC 59.115 38.462 0.00 0.00 0.00 3.36
1868 2364 5.878116 TCCAACCCATTTTAATACTGTCTCG 59.122 40.000 0.00 0.00 0.00 4.04
1871 2367 5.425630 ACCCATTTTAATACTGTCTCGTCC 58.574 41.667 0.00 0.00 0.00 4.79
1898 2398 1.630244 GATGCGGCACACTGTCAGTC 61.630 60.000 4.03 0.00 0.00 3.51
2089 2598 0.693049 TGGCTTTGTCCTCTTCCTCC 59.307 55.000 0.00 0.00 0.00 4.30
2092 2601 1.362224 CTTTGTCCTCTTCCTCCCCA 58.638 55.000 0.00 0.00 0.00 4.96
2167 2698 2.290789 GCAATGCGATGCGATGCAC 61.291 57.895 11.99 0.00 45.07 4.57
2323 2855 3.057315 ACATCACATGCTGGTTTACTTGC 60.057 43.478 0.00 0.00 0.00 4.01
2342 2874 2.230508 TGCTAGTAGTTGGAACTGGACG 59.769 50.000 2.14 0.00 40.07 4.79
2371 2903 2.476185 GCATCTTTGATGGAACCGTTCG 60.476 50.000 5.19 0.00 0.00 3.95
2393 2925 1.535896 ACGATCGATATGTGGGACTCG 59.464 52.381 24.34 0.00 0.00 4.18
2400 2933 0.452987 TATGTGGGACTCGTGTACGC 59.547 55.000 0.00 0.00 39.60 4.42
2413 2946 2.355363 TACGCGTGTGTGCCACTC 60.355 61.111 24.59 0.00 42.20 3.51
2447 3043 3.744426 CCACCTAGATGTTCGTTTTCGTT 59.256 43.478 0.00 0.00 44.46 3.85
2467 3063 9.825109 TTTCGTTGGATGTATTAGTATCATCAA 57.175 29.630 0.00 0.00 39.47 2.57
2603 3206 1.921346 AATGCCAGTGGTCCCCGTA 60.921 57.895 11.74 0.00 0.00 4.02
2609 3212 0.947180 CAGTGGTCCCCGTAAACGTG 60.947 60.000 1.41 0.00 37.74 4.49
2630 3236 2.182516 AGGAAGGGATCAAGATCGGT 57.817 50.000 4.14 0.00 38.69 4.69
3066 3679 0.034059 GGCGGAGGTCGATTGATCAT 59.966 55.000 0.00 0.00 42.43 2.45
3069 3682 2.546795 GCGGAGGTCGATTGATCATTCT 60.547 50.000 14.04 0.00 42.43 2.40
3093 3706 2.460918 CTGTCGATCATGGAACCGTAC 58.539 52.381 0.00 0.00 0.00 3.67
3100 3713 4.503007 CGATCATGGAACCGTACAAACTAG 59.497 45.833 0.00 0.00 0.00 2.57
3101 3714 4.877378 TCATGGAACCGTACAAACTAGT 57.123 40.909 0.00 0.00 0.00 2.57
3183 3804 1.676529 TCTCTAGCCGTCTGGATTTCG 59.323 52.381 0.00 0.00 37.49 3.46
3277 3905 6.462500 GTGGTATATTGATCAGTGCATCTCT 58.538 40.000 0.13 0.00 0.00 3.10
3296 3924 5.710984 TCTCTGGTCGAGTGAAGTAATTTC 58.289 41.667 0.00 0.00 40.75 2.17
3299 3927 5.926542 TCTGGTCGAGTGAAGTAATTTCTTG 59.073 40.000 1.62 0.00 36.71 3.02
3461 4270 5.444663 AACAAGCTTTTTCTGACAGGATC 57.555 39.130 0.00 0.00 0.00 3.36
3529 4338 5.572511 CGTGCATTTTCTAAGCAAAGCATAA 59.427 36.000 0.00 0.00 40.35 1.90
3541 4350 3.182572 GCAAAGCATAAGATCCGTACGAG 59.817 47.826 18.76 7.15 0.00 4.18
3550 4359 1.262417 GATCCGTACGAGCGTGTATCA 59.738 52.381 18.76 0.00 0.00 2.15
3552 4361 1.003223 TCCGTACGAGCGTGTATCATG 60.003 52.381 18.76 0.00 0.00 3.07
3610 4420 7.057894 ACACGGGAGCTAAAAATGGAATATAA 58.942 34.615 0.00 0.00 0.00 0.98
3612 4422 7.444183 CACGGGAGCTAAAAATGGAATATAAGA 59.556 37.037 0.00 0.00 0.00 2.10
3658 4488 3.016736 TGCTTTTTGGATGCTAGTAGCC 58.983 45.455 19.41 8.34 41.51 3.93
3681 4511 0.605589 GCATGTAGAGGAGATCCGGG 59.394 60.000 0.00 0.00 42.08 5.73
3697 4527 0.749649 CGGGTGAGCTAGCAGATCTT 59.250 55.000 18.83 0.00 30.68 2.40
3761 4591 7.262048 TCTAGCGTGACAATTTGTACATGATA 58.738 34.615 17.73 15.53 0.00 2.15
3762 4592 6.349973 AGCGTGACAATTTGTACATGATAG 57.650 37.500 17.73 0.00 0.00 2.08
3771 4601 7.826252 ACAATTTGTACATGATAGAAGTGAGCT 59.174 33.333 9.42 0.00 0.00 4.09
3811 4641 7.439157 AAAGGGCATTAAAAATGAGAAAAGC 57.561 32.000 3.86 0.00 0.00 3.51
3812 4642 6.364568 AGGGCATTAAAAATGAGAAAAGCT 57.635 33.333 3.86 0.00 0.00 3.74
3813 4643 6.772605 AGGGCATTAAAAATGAGAAAAGCTT 58.227 32.000 0.00 0.00 0.00 3.74
3814 4644 7.906327 AGGGCATTAAAAATGAGAAAAGCTTA 58.094 30.769 0.00 0.00 0.00 3.09
3815 4645 7.819415 AGGGCATTAAAAATGAGAAAAGCTTAC 59.181 33.333 0.00 0.00 0.00 2.34
3816 4646 7.064609 GGGCATTAAAAATGAGAAAAGCTTACC 59.935 37.037 0.00 0.00 0.00 2.85
3817 4647 7.819415 GGCATTAAAAATGAGAAAAGCTTACCT 59.181 33.333 0.00 0.00 0.00 3.08
3818 4648 9.208022 GCATTAAAAATGAGAAAAGCTTACCTT 57.792 29.630 0.00 0.00 34.51 3.50
3821 4651 9.965824 TTAAAAATGAGAAAAGCTTACCTTCAG 57.034 29.630 11.04 0.00 31.99 3.02
3822 4652 5.635417 AATGAGAAAAGCTTACCTTCAGC 57.365 39.130 11.04 4.45 37.56 4.26
3823 4653 3.412386 TGAGAAAAGCTTACCTTCAGCC 58.588 45.455 11.04 2.33 38.09 4.85
3824 4654 2.416893 GAGAAAAGCTTACCTTCAGCCG 59.583 50.000 11.04 0.00 38.09 5.52
3825 4655 1.468914 GAAAAGCTTACCTTCAGCCGG 59.531 52.381 0.00 0.00 38.09 6.13
3826 4656 0.960861 AAAGCTTACCTTCAGCCGGC 60.961 55.000 21.89 21.89 38.09 6.13
3827 4657 2.821679 AAGCTTACCTTCAGCCGGCC 62.822 60.000 26.15 5.07 38.09 6.13
3828 4658 2.511600 CTTACCTTCAGCCGGCCG 60.512 66.667 26.15 21.04 0.00 6.13
3829 4659 2.998480 TTACCTTCAGCCGGCCGA 60.998 61.111 30.73 17.59 0.00 5.54
3830 4660 2.311688 CTTACCTTCAGCCGGCCGAT 62.312 60.000 30.73 12.66 0.00 4.18
3831 4661 2.306255 TTACCTTCAGCCGGCCGATC 62.306 60.000 30.73 18.31 0.00 3.69
3859 4689 4.773117 GTCCGCCGACTCCGTGTC 62.773 72.222 0.00 0.00 42.06 3.67
3863 4693 4.773117 GCCGACTCCGTGTCCGTC 62.773 72.222 0.00 0.00 42.49 4.79
3864 4694 3.359523 CCGACTCCGTGTCCGTCA 61.360 66.667 0.00 0.00 42.49 4.35
3865 4695 2.176055 CGACTCCGTGTCCGTCAG 59.824 66.667 1.10 0.00 42.49 3.51
3866 4696 2.322830 CGACTCCGTGTCCGTCAGA 61.323 63.158 1.10 0.00 42.49 3.27
3867 4697 1.645704 CGACTCCGTGTCCGTCAGAT 61.646 60.000 1.10 0.00 42.49 2.90
3868 4698 0.099082 GACTCCGTGTCCGTCAGATC 59.901 60.000 0.00 0.00 39.69 2.75
3869 4699 1.313812 ACTCCGTGTCCGTCAGATCC 61.314 60.000 0.00 0.00 0.00 3.36
3870 4700 1.001269 TCCGTGTCCGTCAGATCCT 60.001 57.895 0.00 0.00 0.00 3.24
3871 4701 1.030488 TCCGTGTCCGTCAGATCCTC 61.030 60.000 0.00 0.00 0.00 3.71
3872 4702 1.032657 CCGTGTCCGTCAGATCCTCT 61.033 60.000 0.00 0.00 0.00 3.69
3873 4703 0.099613 CGTGTCCGTCAGATCCTCTG 59.900 60.000 0.00 0.00 45.59 3.35
3874 4704 1.178276 GTGTCCGTCAGATCCTCTGT 58.822 55.000 4.21 0.00 44.58 3.41
3875 4705 1.546476 GTGTCCGTCAGATCCTCTGTT 59.454 52.381 4.21 0.00 44.58 3.16
3876 4706 1.546029 TGTCCGTCAGATCCTCTGTTG 59.454 52.381 4.21 0.00 44.58 3.33
3877 4707 1.819288 GTCCGTCAGATCCTCTGTTGA 59.181 52.381 4.21 0.00 44.58 3.18
3878 4708 2.428890 GTCCGTCAGATCCTCTGTTGAT 59.571 50.000 4.21 0.00 44.58 2.57
3879 4709 2.690497 TCCGTCAGATCCTCTGTTGATC 59.310 50.000 4.21 0.00 44.58 2.92
3880 4710 2.428530 CCGTCAGATCCTCTGTTGATCA 59.571 50.000 4.21 0.00 44.58 2.92
3881 4711 3.490590 CCGTCAGATCCTCTGTTGATCAG 60.491 52.174 0.00 0.00 44.58 2.90
3890 4720 3.790152 TCTGTTGATCAGATGGACGAG 57.210 47.619 0.00 0.00 46.77 4.18
3891 4721 3.356290 TCTGTTGATCAGATGGACGAGA 58.644 45.455 0.00 0.00 46.77 4.04
3892 4722 3.379688 TCTGTTGATCAGATGGACGAGAG 59.620 47.826 0.00 0.00 46.77 3.20
3893 4723 2.159184 TGTTGATCAGATGGACGAGAGC 60.159 50.000 0.00 0.00 0.00 4.09
3894 4724 1.767759 TGATCAGATGGACGAGAGCA 58.232 50.000 0.00 0.00 0.00 4.26
3895 4725 1.406898 TGATCAGATGGACGAGAGCAC 59.593 52.381 0.00 0.00 0.00 4.40
3896 4726 0.749649 ATCAGATGGACGAGAGCACC 59.250 55.000 0.00 0.00 0.00 5.01
3897 4727 1.142748 CAGATGGACGAGAGCACCC 59.857 63.158 0.00 0.00 0.00 4.61
3898 4728 2.060980 AGATGGACGAGAGCACCCC 61.061 63.158 0.00 0.00 0.00 4.95
3899 4729 3.083997 ATGGACGAGAGCACCCCC 61.084 66.667 0.00 0.00 0.00 5.40
3916 4746 2.510613 CCCCCGTGTAAATGTGTTTCT 58.489 47.619 0.00 0.00 0.00 2.52
3917 4747 2.227865 CCCCCGTGTAAATGTGTTTCTG 59.772 50.000 0.00 0.00 0.00 3.02
3918 4748 2.351350 CCCCGTGTAAATGTGTTTCTGC 60.351 50.000 0.00 0.00 0.00 4.26
3919 4749 2.292016 CCCGTGTAAATGTGTTTCTGCA 59.708 45.455 0.00 0.00 0.00 4.41
3920 4750 3.243234 CCCGTGTAAATGTGTTTCTGCAA 60.243 43.478 0.00 0.00 0.00 4.08
3921 4751 3.728718 CCGTGTAAATGTGTTTCTGCAAC 59.271 43.478 0.00 0.00 35.71 4.17
3922 4752 4.497340 CCGTGTAAATGTGTTTCTGCAACT 60.497 41.667 0.00 0.00 36.21 3.16
3923 4753 4.437495 CGTGTAAATGTGTTTCTGCAACTG 59.563 41.667 0.00 0.00 36.21 3.16
3924 4754 5.577835 GTGTAAATGTGTTTCTGCAACTGA 58.422 37.500 0.00 0.00 36.21 3.41
3925 4755 5.682862 GTGTAAATGTGTTTCTGCAACTGAG 59.317 40.000 0.00 0.00 36.21 3.35
3926 4756 4.989279 AAATGTGTTTCTGCAACTGAGT 57.011 36.364 0.00 0.00 36.21 3.41
3927 4757 4.558538 AATGTGTTTCTGCAACTGAGTC 57.441 40.909 0.00 0.00 36.21 3.36
3928 4758 3.266510 TGTGTTTCTGCAACTGAGTCT 57.733 42.857 0.00 0.00 36.21 3.24
3929 4759 3.609853 TGTGTTTCTGCAACTGAGTCTT 58.390 40.909 0.00 0.00 36.21 3.01
3930 4760 4.009675 TGTGTTTCTGCAACTGAGTCTTT 58.990 39.130 0.00 0.00 36.21 2.52
3931 4761 4.142622 TGTGTTTCTGCAACTGAGTCTTTG 60.143 41.667 0.00 0.00 36.21 2.77
3932 4762 4.009675 TGTTTCTGCAACTGAGTCTTTGT 58.990 39.130 6.84 0.00 36.21 2.83
3933 4763 4.458989 TGTTTCTGCAACTGAGTCTTTGTT 59.541 37.500 6.84 0.52 36.21 2.83
3934 4764 5.048083 TGTTTCTGCAACTGAGTCTTTGTTT 60.048 36.000 6.84 0.00 36.21 2.83
3935 4765 4.882671 TCTGCAACTGAGTCTTTGTTTC 57.117 40.909 6.84 0.00 0.00 2.78
3936 4766 3.309682 TCTGCAACTGAGTCTTTGTTTCG 59.690 43.478 6.84 0.00 0.00 3.46
3937 4767 3.266636 TGCAACTGAGTCTTTGTTTCGA 58.733 40.909 6.84 0.00 0.00 3.71
3938 4768 3.687212 TGCAACTGAGTCTTTGTTTCGAA 59.313 39.130 0.00 0.00 0.00 3.71
3939 4769 4.155099 TGCAACTGAGTCTTTGTTTCGAAA 59.845 37.500 6.47 6.47 0.00 3.46
3940 4770 5.092781 GCAACTGAGTCTTTGTTTCGAAAA 58.907 37.500 13.10 0.34 0.00 2.29
3941 4771 5.228012 GCAACTGAGTCTTTGTTTCGAAAAG 59.772 40.000 13.10 6.95 36.22 2.27
3942 4772 5.485662 ACTGAGTCTTTGTTTCGAAAAGG 57.514 39.130 13.10 0.00 35.71 3.11
3943 4773 5.183228 ACTGAGTCTTTGTTTCGAAAAGGA 58.817 37.500 13.10 0.95 35.71 3.36
3944 4774 5.294552 ACTGAGTCTTTGTTTCGAAAAGGAG 59.705 40.000 13.10 10.27 35.71 3.69
3945 4775 5.424757 TGAGTCTTTGTTTCGAAAAGGAGA 58.575 37.500 13.10 12.35 35.71 3.71
3946 4776 5.523916 TGAGTCTTTGTTTCGAAAAGGAGAG 59.476 40.000 13.10 6.88 35.71 3.20
3947 4777 5.429130 AGTCTTTGTTTCGAAAAGGAGAGT 58.571 37.500 13.10 14.37 35.71 3.24
3948 4778 5.880887 AGTCTTTGTTTCGAAAAGGAGAGTT 59.119 36.000 13.10 4.89 35.71 3.01
3949 4779 6.374613 AGTCTTTGTTTCGAAAAGGAGAGTTT 59.625 34.615 13.10 2.77 35.71 2.66
3950 4780 7.027760 GTCTTTGTTTCGAAAAGGAGAGTTTT 58.972 34.615 13.10 0.00 35.71 2.43
3951 4781 7.008357 GTCTTTGTTTCGAAAAGGAGAGTTTTG 59.992 37.037 13.10 0.00 35.71 2.44
3952 4782 4.668289 TGTTTCGAAAAGGAGAGTTTTGC 58.332 39.130 13.10 0.00 29.58 3.68
3953 4783 4.156922 TGTTTCGAAAAGGAGAGTTTTGCA 59.843 37.500 13.10 0.00 29.58 4.08
3954 4784 4.974368 TTCGAAAAGGAGAGTTTTGCAA 57.026 36.364 0.00 0.00 29.58 4.08
3955 4785 4.287238 TCGAAAAGGAGAGTTTTGCAAC 57.713 40.909 0.00 0.00 29.58 4.17
3956 4786 3.945285 TCGAAAAGGAGAGTTTTGCAACT 59.055 39.130 0.00 0.00 46.64 3.16
3957 4787 4.037690 CGAAAAGGAGAGTTTTGCAACTG 58.962 43.478 0.00 0.00 43.79 3.16
3958 4788 4.438744 CGAAAAGGAGAGTTTTGCAACTGT 60.439 41.667 0.00 0.00 43.79 3.55
3962 4792 3.615849 GAGAGTTTTGCAACTGTCTGG 57.384 47.619 0.00 0.00 45.70 3.86
3963 4793 1.678101 AGAGTTTTGCAACTGTCTGGC 59.322 47.619 0.00 0.00 43.79 4.85
3964 4794 1.678101 GAGTTTTGCAACTGTCTGGCT 59.322 47.619 0.00 0.00 43.79 4.75
3965 4795 2.099756 GAGTTTTGCAACTGTCTGGCTT 59.900 45.455 0.00 0.00 43.79 4.35
3966 4796 2.497273 AGTTTTGCAACTGTCTGGCTTT 59.503 40.909 0.00 0.00 42.05 3.51
3967 4797 3.055891 AGTTTTGCAACTGTCTGGCTTTT 60.056 39.130 0.00 0.00 42.05 2.27
3968 4798 3.608316 TTTGCAACTGTCTGGCTTTTT 57.392 38.095 0.00 0.00 0.00 1.94
3969 4799 2.582728 TGCAACTGTCTGGCTTTTTG 57.417 45.000 0.00 0.00 0.00 2.44
3970 4800 1.211743 GCAACTGTCTGGCTTTTTGC 58.788 50.000 0.00 0.00 41.94 3.68
3971 4801 1.471327 GCAACTGTCTGGCTTTTTGCA 60.471 47.619 7.76 0.00 45.15 4.08
3972 4802 2.466846 CAACTGTCTGGCTTTTTGCAG 58.533 47.619 0.00 0.00 45.15 4.41
3973 4803 0.386838 ACTGTCTGGCTTTTTGCAGC 59.613 50.000 0.00 0.00 45.15 5.25
3974 4804 0.662374 CTGTCTGGCTTTTTGCAGCG 60.662 55.000 0.00 0.00 45.15 5.18
3975 4805 1.372128 GTCTGGCTTTTTGCAGCGG 60.372 57.895 0.00 0.00 45.15 5.52
3976 4806 2.735857 CTGGCTTTTTGCAGCGGC 60.736 61.111 0.31 0.31 45.15 6.53
3977 4807 3.216944 CTGGCTTTTTGCAGCGGCT 62.217 57.895 10.92 0.00 45.15 5.52
3978 4808 2.735857 GGCTTTTTGCAGCGGCTG 60.736 61.111 25.21 25.21 45.15 4.85
3979 4809 2.028043 GCTTTTTGCAGCGGCTGT 59.972 55.556 28.88 0.00 42.31 4.40
3980 4810 2.305127 GCTTTTTGCAGCGGCTGTG 61.305 57.895 28.88 8.36 42.31 3.66
3981 4811 1.359833 CTTTTTGCAGCGGCTGTGA 59.640 52.632 28.88 16.15 41.91 3.58
3982 4812 0.936297 CTTTTTGCAGCGGCTGTGAC 60.936 55.000 28.88 14.53 41.91 3.67
3983 4813 1.383456 TTTTTGCAGCGGCTGTGACT 61.383 50.000 28.88 0.00 41.91 3.41
3984 4814 1.785041 TTTTGCAGCGGCTGTGACTC 61.785 55.000 28.88 13.83 41.91 3.36
3987 4817 3.108289 CAGCGGCTGTGACTCGTG 61.108 66.667 21.60 0.00 0.00 4.35
4017 4847 2.974698 CGATGGCGGCCAGGAATC 60.975 66.667 27.62 18.06 36.75 2.52
4018 4848 2.512896 GATGGCGGCCAGGAATCT 59.487 61.111 27.62 9.26 36.75 2.40
4019 4849 1.599240 GATGGCGGCCAGGAATCTC 60.599 63.158 27.62 14.73 36.75 2.75
4020 4850 3.466791 ATGGCGGCCAGGAATCTCG 62.467 63.158 27.62 0.00 36.75 4.04
4024 4854 4.918201 GGCCAGGAATCTCGCCGG 62.918 72.222 0.00 0.00 37.52 6.13
4025 4855 3.849951 GCCAGGAATCTCGCCGGA 61.850 66.667 5.05 0.00 0.00 5.14
4026 4856 3.142393 CCAGGAATCTCGCCGGAT 58.858 61.111 5.05 0.00 0.00 4.18
4027 4857 1.005630 CCAGGAATCTCGCCGGATC 60.006 63.158 5.05 0.00 0.00 3.36
4028 4858 1.005630 CAGGAATCTCGCCGGATCC 60.006 63.158 5.05 0.00 0.00 3.36
4029 4859 2.049063 GGAATCTCGCCGGATCCG 60.049 66.667 27.65 27.65 39.44 4.18
4030 4860 2.561956 GGAATCTCGCCGGATCCGA 61.562 63.158 35.42 15.67 42.83 4.55
4031 4861 1.371881 GAATCTCGCCGGATCCGAC 60.372 63.158 35.42 23.92 42.83 4.79
4032 4862 3.195591 AATCTCGCCGGATCCGACG 62.196 63.158 33.39 33.39 45.93 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.926710 GGAATTTCAAATACGACATATCTCGAT 58.073 33.333 7.42 0.00 37.11 3.59
2 3 7.923878 TGGAATTTCAAATACGACATATCTCGA 59.076 33.333 7.42 0.00 37.11 4.04
3 4 8.004344 GTGGAATTTCAAATACGACATATCTCG 58.996 37.037 0.00 0.00 39.68 4.04
4 5 9.046296 AGTGGAATTTCAAATACGACATATCTC 57.954 33.333 0.00 0.00 0.00 2.75
148 149 7.459394 TTCGATCGATTTAGTTGTATGGAAC 57.541 36.000 20.18 0.00 0.00 3.62
164 165 3.181470 TGGCTGGAATGTATTTCGATCGA 60.181 43.478 15.15 15.15 34.98 3.59
165 166 3.130633 TGGCTGGAATGTATTTCGATCG 58.869 45.455 9.36 9.36 34.98 3.69
166 167 5.471456 AGATTGGCTGGAATGTATTTCGATC 59.529 40.000 0.00 0.00 34.98 3.69
170 174 6.096001 AGTGAAGATTGGCTGGAATGTATTTC 59.904 38.462 0.00 0.00 0.00 2.17
183 187 0.723981 GCGTGAGAGTGAAGATTGGC 59.276 55.000 0.00 0.00 0.00 4.52
196 200 3.589654 ATGACACCCCACGCGTGAG 62.590 63.158 39.10 29.84 35.17 3.51
198 202 2.220615 TAGATGACACCCCACGCGTG 62.221 60.000 31.77 31.77 37.26 5.34
252 256 0.248289 CTTGGCCCTTTGCATTCTGG 59.752 55.000 0.00 0.00 43.89 3.86
262 266 0.178961 GTCCAAACCTCTTGGCCCTT 60.179 55.000 0.00 0.00 39.38 3.95
270 274 2.930826 ACGTGAATGTCCAAACCTCT 57.069 45.000 0.00 0.00 0.00 3.69
293 302 7.668525 AGAAAAATTTACAGAGGGAGTAACG 57.331 36.000 0.00 0.00 31.67 3.18
319 328 9.158233 CCCTCACTGATCTAAACGTTTTTATAA 57.842 33.333 20.19 5.60 0.00 0.98
320 329 8.533657 TCCCTCACTGATCTAAACGTTTTTATA 58.466 33.333 20.19 0.00 0.00 0.98
321 330 7.391620 TCCCTCACTGATCTAAACGTTTTTAT 58.608 34.615 20.19 12.73 0.00 1.40
322 331 6.761312 TCCCTCACTGATCTAAACGTTTTTA 58.239 36.000 20.19 8.14 0.00 1.52
323 332 5.617252 TCCCTCACTGATCTAAACGTTTTT 58.383 37.500 20.19 4.67 0.00 1.94
324 333 5.221661 ACTCCCTCACTGATCTAAACGTTTT 60.222 40.000 20.19 0.19 0.00 2.43
325 334 4.283722 ACTCCCTCACTGATCTAAACGTTT 59.716 41.667 18.90 18.90 0.00 3.60
326 335 3.833070 ACTCCCTCACTGATCTAAACGTT 59.167 43.478 0.00 0.00 0.00 3.99
327 336 3.432378 ACTCCCTCACTGATCTAAACGT 58.568 45.455 0.00 0.00 0.00 3.99
328 337 4.641094 ACTACTCCCTCACTGATCTAAACG 59.359 45.833 0.00 0.00 0.00 3.60
329 338 5.680151 GCACTACTCCCTCACTGATCTAAAC 60.680 48.000 0.00 0.00 0.00 2.01
330 339 4.402793 GCACTACTCCCTCACTGATCTAAA 59.597 45.833 0.00 0.00 0.00 1.85
331 340 3.954904 GCACTACTCCCTCACTGATCTAA 59.045 47.826 0.00 0.00 0.00 2.10
332 341 3.053619 TGCACTACTCCCTCACTGATCTA 60.054 47.826 0.00 0.00 0.00 1.98
333 342 2.291865 TGCACTACTCCCTCACTGATCT 60.292 50.000 0.00 0.00 0.00 2.75
334 343 2.103373 TGCACTACTCCCTCACTGATC 58.897 52.381 0.00 0.00 0.00 2.92
335 344 2.238084 TGCACTACTCCCTCACTGAT 57.762 50.000 0.00 0.00 0.00 2.90
336 345 1.827344 CATGCACTACTCCCTCACTGA 59.173 52.381 0.00 0.00 0.00 3.41
337 346 1.827344 TCATGCACTACTCCCTCACTG 59.173 52.381 0.00 0.00 0.00 3.66
338 347 1.827969 GTCATGCACTACTCCCTCACT 59.172 52.381 0.00 0.00 0.00 3.41
339 348 1.469940 CGTCATGCACTACTCCCTCAC 60.470 57.143 0.00 0.00 0.00 3.51
340 349 0.817654 CGTCATGCACTACTCCCTCA 59.182 55.000 0.00 0.00 0.00 3.86
341 350 1.103803 TCGTCATGCACTACTCCCTC 58.896 55.000 0.00 0.00 0.00 4.30
342 351 1.410517 CATCGTCATGCACTACTCCCT 59.589 52.381 0.00 0.00 0.00 4.20
343 352 1.409064 TCATCGTCATGCACTACTCCC 59.591 52.381 0.00 0.00 0.00 4.30
344 353 2.464865 GTCATCGTCATGCACTACTCC 58.535 52.381 0.00 0.00 0.00 3.85
345 354 2.112522 CGTCATCGTCATGCACTACTC 58.887 52.381 0.00 0.00 0.00 2.59
346 355 1.202302 CCGTCATCGTCATGCACTACT 60.202 52.381 0.00 0.00 35.01 2.57
347 356 1.200483 CCGTCATCGTCATGCACTAC 58.800 55.000 0.00 0.00 35.01 2.73
348 357 0.815095 ACCGTCATCGTCATGCACTA 59.185 50.000 0.00 0.00 35.01 2.74
349 358 0.737367 CACCGTCATCGTCATGCACT 60.737 55.000 0.00 0.00 35.01 4.40
350 359 0.735978 TCACCGTCATCGTCATGCAC 60.736 55.000 0.00 0.00 35.01 4.57
351 360 0.735978 GTCACCGTCATCGTCATGCA 60.736 55.000 0.00 0.00 35.01 3.96
352 361 1.421410 GGTCACCGTCATCGTCATGC 61.421 60.000 0.00 0.00 35.01 4.06
353 362 1.139816 CGGTCACCGTCATCGTCATG 61.140 60.000 8.54 0.00 42.73 3.07
354 363 1.138883 CGGTCACCGTCATCGTCAT 59.861 57.895 8.54 0.00 42.73 3.06
355 364 2.564458 CGGTCACCGTCATCGTCA 59.436 61.111 8.54 0.00 42.73 4.35
374 383 1.648720 CGTTGTTGAGGTGCCTGTG 59.351 57.895 0.00 0.00 0.00 3.66
376 385 2.908073 GCCGTTGTTGAGGTGCCTG 61.908 63.158 0.00 0.00 0.00 4.85
377 386 2.594592 GCCGTTGTTGAGGTGCCT 60.595 61.111 0.00 0.00 0.00 4.75
378 387 1.805428 ATTGCCGTTGTTGAGGTGCC 61.805 55.000 0.00 0.00 0.00 5.01
379 388 0.664166 CATTGCCGTTGTTGAGGTGC 60.664 55.000 0.00 0.00 0.00 5.01
381 390 1.106351 TGCATTGCCGTTGTTGAGGT 61.106 50.000 6.12 0.00 0.00 3.85
416 428 2.618419 CCGACGTACGTGTCTTATACG 58.382 52.381 28.16 19.16 45.53 3.06
446 458 2.106131 TATGTACGCTGCGCCCAG 59.894 61.111 23.51 0.00 42.13 4.45
447 459 2.202824 GTATGTACGCTGCGCCCA 60.203 61.111 23.51 18.69 0.00 5.36
448 460 0.319211 TATGTATGTACGCTGCGCCC 60.319 55.000 23.51 13.22 0.00 6.13
457 469 3.120792 CAGGGTGCACGTATGTATGTAC 58.879 50.000 11.45 0.00 0.00 2.90
458 470 2.761767 ACAGGGTGCACGTATGTATGTA 59.238 45.455 15.90 0.00 0.00 2.29
459 471 1.553248 ACAGGGTGCACGTATGTATGT 59.447 47.619 15.90 7.98 0.00 2.29
460 472 1.933181 CACAGGGTGCACGTATGTATG 59.067 52.381 16.71 7.99 0.00 2.39
461 473 1.828595 TCACAGGGTGCACGTATGTAT 59.171 47.619 16.71 0.00 32.98 2.29
491 503 6.003326 GGATCAGATCAGAGTGACTAGATGA 58.997 44.000 12.66 1.56 0.00 2.92
505 517 1.551099 GGAGGGGATCGGATCAGATCA 60.551 57.143 29.23 0.00 46.55 2.92
515 527 2.206536 GCTGGAGAGGAGGGGATCG 61.207 68.421 0.00 0.00 0.00 3.69
545 568 3.939939 TGAGCGTGGCTTGCAGGA 61.940 61.111 0.00 0.00 39.88 3.86
558 581 1.957177 TCTCATCCTCGTATGGTGAGC 59.043 52.381 6.89 0.00 36.32 4.26
566 589 5.243730 TGATTGTATGCATCTCATCCTCGTA 59.756 40.000 0.19 0.00 36.63 3.43
616 641 4.049186 GTGGTATCGCTATGTGTACAAGG 58.951 47.826 0.00 0.00 0.00 3.61
774 799 0.186386 GAGATCGGAGAGGGGAGGAA 59.814 60.000 0.00 0.00 43.63 3.36
775 800 1.847686 GAGATCGGAGAGGGGAGGA 59.152 63.158 0.00 0.00 43.63 3.71
780 805 1.649815 CGTTCGAGATCGGAGAGGG 59.350 63.158 1.91 0.00 43.63 4.30
932 965 2.008329 GTGCAGATCAAAGAGAGGCAG 58.992 52.381 0.00 0.00 33.99 4.85
933 966 1.339438 GGTGCAGATCAAAGAGAGGCA 60.339 52.381 0.00 0.00 31.80 4.75
934 967 1.377536 GGTGCAGATCAAAGAGAGGC 58.622 55.000 0.00 0.00 0.00 4.70
939 972 0.620556 GGGAGGGTGCAGATCAAAGA 59.379 55.000 0.00 0.00 0.00 2.52
1121 1543 2.267324 GGAGAGGCAGCCAGTGTC 59.733 66.667 15.80 1.61 0.00 3.67
1331 1784 0.394352 AGGAGTTAATTGGCAGGCCG 60.394 55.000 5.74 0.00 39.42 6.13
1378 1836 1.406614 GCCAGATCTGAGGGACACTTG 60.407 57.143 24.62 4.19 0.00 3.16
1434 1897 4.920112 CCACCACCACGTTGCCGA 62.920 66.667 0.00 0.00 37.88 5.54
1641 2137 2.913777 TAGTATCATCGGCCGATTCG 57.086 50.000 37.36 26.50 31.62 3.34
1762 2258 0.396139 CACTGCCCCCACTAATGCAT 60.396 55.000 0.00 0.00 32.53 3.96
1763 2259 1.001020 CACTGCCCCCACTAATGCA 60.001 57.895 0.00 0.00 0.00 3.96
1764 2260 2.418083 GCACTGCCCCCACTAATGC 61.418 63.158 0.00 0.00 0.00 3.56
1765 2261 0.611618 TTGCACTGCCCCCACTAATG 60.612 55.000 0.00 0.00 0.00 1.90
1766 2262 0.336048 ATTGCACTGCCCCCACTAAT 59.664 50.000 0.00 0.00 0.00 1.73
1767 2263 0.611618 CATTGCACTGCCCCCACTAA 60.612 55.000 0.00 0.00 0.00 2.24
1819 2315 1.219393 GAGTCTACTGGGCTGGTGC 59.781 63.158 0.00 0.00 38.76 5.01
1820 2316 0.904865 TGGAGTCTACTGGGCTGGTG 60.905 60.000 0.00 0.00 0.00 4.17
1821 2317 0.043334 ATGGAGTCTACTGGGCTGGT 59.957 55.000 0.00 0.00 0.00 4.00
1822 2318 0.755686 GATGGAGTCTACTGGGCTGG 59.244 60.000 0.00 0.00 0.00 4.85
1823 2319 1.137872 GTGATGGAGTCTACTGGGCTG 59.862 57.143 0.00 0.00 0.00 4.85
1824 2320 1.007721 AGTGATGGAGTCTACTGGGCT 59.992 52.381 0.00 0.00 0.00 5.19
1825 2321 1.410882 GAGTGATGGAGTCTACTGGGC 59.589 57.143 0.00 0.00 0.00 5.36
1826 2322 2.035632 GGAGTGATGGAGTCTACTGGG 58.964 57.143 0.00 0.00 0.00 4.45
1827 2323 2.739943 TGGAGTGATGGAGTCTACTGG 58.260 52.381 0.00 0.00 0.00 4.00
1828 2324 3.118956 GGTTGGAGTGATGGAGTCTACTG 60.119 52.174 0.00 0.00 0.00 2.74
1829 2325 3.100671 GGTTGGAGTGATGGAGTCTACT 58.899 50.000 0.00 0.00 0.00 2.57
1830 2326 2.168728 GGGTTGGAGTGATGGAGTCTAC 59.831 54.545 0.00 0.00 0.00 2.59
1831 2327 2.225522 TGGGTTGGAGTGATGGAGTCTA 60.226 50.000 0.00 0.00 0.00 2.59
1832 2328 1.280457 GGGTTGGAGTGATGGAGTCT 58.720 55.000 0.00 0.00 0.00 3.24
1833 2329 0.984230 TGGGTTGGAGTGATGGAGTC 59.016 55.000 0.00 0.00 0.00 3.36
1834 2330 1.673767 ATGGGTTGGAGTGATGGAGT 58.326 50.000 0.00 0.00 0.00 3.85
1835 2331 2.814805 AATGGGTTGGAGTGATGGAG 57.185 50.000 0.00 0.00 0.00 3.86
1836 2332 3.541242 AAAATGGGTTGGAGTGATGGA 57.459 42.857 0.00 0.00 0.00 3.41
1837 2333 5.937975 ATTAAAATGGGTTGGAGTGATGG 57.062 39.130 0.00 0.00 0.00 3.51
1840 2336 6.548321 ACAGTATTAAAATGGGTTGGAGTGA 58.452 36.000 0.00 0.00 0.00 3.41
1848 2344 5.189145 AGGACGAGACAGTATTAAAATGGGT 59.811 40.000 0.00 0.00 0.00 4.51
1863 2359 0.526524 CATCGCCAAGAGGACGAGAC 60.527 60.000 0.00 0.00 43.21 3.36
1864 2360 1.809869 CATCGCCAAGAGGACGAGA 59.190 57.895 0.00 0.00 43.21 4.04
1865 2361 1.880340 GCATCGCCAAGAGGACGAG 60.880 63.158 0.00 0.00 43.21 4.18
1866 2362 2.184322 GCATCGCCAAGAGGACGA 59.816 61.111 0.00 0.00 43.76 4.20
1867 2363 3.257561 CGCATCGCCAAGAGGACG 61.258 66.667 0.00 0.00 36.89 4.79
1868 2364 2.892425 CCGCATCGCCAAGAGGAC 60.892 66.667 0.00 0.00 36.89 3.85
1871 2367 3.869272 GTGCCGCATCGCCAAGAG 61.869 66.667 0.00 0.00 0.00 2.85
1898 2398 8.851145 ACTAATAGTATGCGATCTATACCATGG 58.149 37.037 11.19 11.19 32.66 3.66
1939 2448 7.855904 CGAAATACTACCACCATATGCTTTTTC 59.144 37.037 0.00 0.00 0.00 2.29
2323 2855 3.757493 AGACGTCCAGTTCCAACTACTAG 59.243 47.826 13.01 0.00 37.08 2.57
2342 2874 3.002791 TCCATCAAAGATGCAACGAGAC 58.997 45.455 0.00 0.00 0.00 3.36
2371 2903 1.887198 AGTCCCACATATCGATCGTCC 59.113 52.381 15.94 0.00 0.00 4.79
2382 2914 1.214589 GCGTACACGAGTCCCACAT 59.785 57.895 5.84 0.00 43.02 3.21
2383 2915 2.646719 GCGTACACGAGTCCCACA 59.353 61.111 5.84 0.00 43.02 4.17
2393 2925 2.962786 TGGCACACACGCGTACAC 60.963 61.111 13.44 0.00 0.00 2.90
2413 2946 5.930135 ACATCTAGGTGGTAAATTGGCTAG 58.070 41.667 8.13 0.00 0.00 3.42
2447 3043 9.987272 CTGAAGTTGATGATACTAATACATCCA 57.013 33.333 0.00 0.00 39.41 3.41
2492 3090 2.739292 CTGCATTGCAACATATGGAGC 58.261 47.619 13.18 10.85 38.41 4.70
2559 3162 0.675837 ATGACGAGACGTTCTCCGGA 60.676 55.000 2.93 2.93 41.37 5.14
2597 3200 1.435577 CTTCCTTCACGTTTACGGGG 58.564 55.000 4.52 2.72 44.15 5.73
2603 3206 3.072476 TCTTGATCCCTTCCTTCACGTTT 59.928 43.478 0.00 0.00 0.00 3.60
2609 3212 2.436173 ACCGATCTTGATCCCTTCCTTC 59.564 50.000 5.18 0.00 0.00 3.46
3066 3679 2.456577 TCCATGATCGACAGGTCAGAA 58.543 47.619 0.00 0.00 0.00 3.02
3069 3682 1.207089 GGTTCCATGATCGACAGGTCA 59.793 52.381 0.00 0.00 0.00 4.02
3112 3725 7.156876 TGCACAACCCTTCTAATAGAAAATG 57.843 36.000 4.13 3.97 33.19 2.32
3120 3733 6.949352 CAAGATATGCACAACCCTTCTAAT 57.051 37.500 0.00 0.00 0.00 1.73
3145 3766 3.834813 AGAGAAGCTACTCACCATGAACA 59.165 43.478 0.00 0.00 39.14 3.18
3183 3804 3.189910 TGCATGATCACAGAGAACAAAGC 59.810 43.478 0.00 0.00 35.86 3.51
3249 3877 4.040339 TGCACTGATCAATATACCACGGAT 59.960 41.667 0.00 0.00 0.00 4.18
3259 3887 4.500375 CGACCAGAGATGCACTGATCAATA 60.500 45.833 4.45 0.00 37.54 1.90
3277 3905 5.607477 ACAAGAAATTACTTCACTCGACCA 58.393 37.500 0.00 0.00 36.40 4.02
3296 3924 9.294030 GATTACCAATTGCTATCAAAGAACAAG 57.706 33.333 0.00 0.00 35.56 3.16
3299 3927 8.677300 TGAGATTACCAATTGCTATCAAAGAAC 58.323 33.333 0.00 0.00 35.56 3.01
3308 3936 4.385199 CCCAGGTGAGATTACCAATTGCTA 60.385 45.833 0.00 0.00 43.37 3.49
3461 4270 2.841215 TGGTTAACGAGTTGTTGGAGG 58.159 47.619 5.98 0.00 42.01 4.30
3529 4338 1.530293 GATACACGCTCGTACGGATCT 59.470 52.381 16.52 0.00 37.37 2.75
3541 4350 3.492383 CCTGATGAAGACATGATACACGC 59.508 47.826 0.00 0.00 36.82 5.34
3550 4359 2.093500 TGCGCTAACCTGATGAAGACAT 60.093 45.455 9.73 0.00 39.67 3.06
3552 4361 2.010145 TGCGCTAACCTGATGAAGAC 57.990 50.000 9.73 0.00 0.00 3.01
3579 4389 5.007332 CCATTTTTAGCTCCCGTGTATGTAC 59.993 44.000 0.00 0.00 0.00 2.90
3610 4420 5.505181 ACAGACACACCCTTCATTATTCT 57.495 39.130 0.00 0.00 0.00 2.40
3612 4422 7.016153 TCTAACAGACACACCCTTCATTATT 57.984 36.000 0.00 0.00 0.00 1.40
3658 4488 1.336702 GGATCTCCTCTACATGCTGCG 60.337 57.143 0.00 0.00 0.00 5.18
3681 4511 4.947645 AGATTCAAGATCTGCTAGCTCAC 58.052 43.478 17.23 5.08 0.00 3.51
3697 4527 6.159299 TCAGAATTGGTGCAAAAAGATTCA 57.841 33.333 0.00 0.00 0.00 2.57
3761 4591 6.515272 TTGAACTTTTGAAAGCTCACTTCT 57.485 33.333 8.61 0.00 39.89 2.85
3762 4592 7.581011 TTTTGAACTTTTGAAAGCTCACTTC 57.419 32.000 8.61 3.85 39.89 3.01
3804 4634 2.427506 CGGCTGAAGGTAAGCTTTTCT 58.572 47.619 3.20 0.00 40.64 2.52
3805 4635 1.468914 CCGGCTGAAGGTAAGCTTTTC 59.531 52.381 3.20 3.03 40.64 2.29
3806 4636 1.534729 CCGGCTGAAGGTAAGCTTTT 58.465 50.000 3.20 0.00 40.64 2.27
3807 4637 0.960861 GCCGGCTGAAGGTAAGCTTT 60.961 55.000 22.15 0.00 40.64 3.51
3808 4638 1.377333 GCCGGCTGAAGGTAAGCTT 60.377 57.895 22.15 3.48 40.64 3.74
3809 4639 2.269241 GCCGGCTGAAGGTAAGCT 59.731 61.111 22.15 0.00 40.64 3.74
3810 4640 2.824489 GGCCGGCTGAAGGTAAGC 60.824 66.667 28.56 0.41 40.06 3.09
3811 4641 2.311688 ATCGGCCGGCTGAAGGTAAG 62.312 60.000 39.93 13.43 34.70 2.34
3812 4642 2.306255 GATCGGCCGGCTGAAGGTAA 62.306 60.000 39.93 18.49 34.70 2.85
3813 4643 2.762459 ATCGGCCGGCTGAAGGTA 60.762 61.111 39.93 19.30 34.70 3.08
3814 4644 4.162690 GATCGGCCGGCTGAAGGT 62.163 66.667 39.93 25.43 34.70 3.50
3842 4672 4.773117 GACACGGAGTCGGCGGAC 62.773 72.222 16.09 16.09 41.61 4.79
3849 4679 0.099082 GATCTGACGGACACGGAGTC 59.901 60.000 2.03 2.03 41.61 3.36
3851 4681 1.032657 AGGATCTGACGGACACGGAG 61.033 60.000 0.00 0.00 46.48 4.63
3852 4682 1.001269 AGGATCTGACGGACACGGA 60.001 57.895 0.00 0.00 46.48 4.69
3853 4683 1.433879 GAGGATCTGACGGACACGG 59.566 63.158 0.00 0.00 46.48 4.94
3871 4701 3.704512 CTCTCGTCCATCTGATCAACAG 58.295 50.000 0.00 0.00 46.97 3.16
3872 4702 2.159184 GCTCTCGTCCATCTGATCAACA 60.159 50.000 0.00 0.00 0.00 3.33
3873 4703 2.159184 TGCTCTCGTCCATCTGATCAAC 60.159 50.000 0.00 0.00 0.00 3.18
3874 4704 2.102578 TGCTCTCGTCCATCTGATCAA 58.897 47.619 0.00 0.00 0.00 2.57
3875 4705 1.406898 GTGCTCTCGTCCATCTGATCA 59.593 52.381 0.00 0.00 0.00 2.92
3876 4706 1.269517 GGTGCTCTCGTCCATCTGATC 60.270 57.143 0.00 0.00 0.00 2.92
3877 4707 0.749649 GGTGCTCTCGTCCATCTGAT 59.250 55.000 0.00 0.00 0.00 2.90
3878 4708 1.323271 GGGTGCTCTCGTCCATCTGA 61.323 60.000 0.00 0.00 0.00 3.27
3879 4709 1.142748 GGGTGCTCTCGTCCATCTG 59.857 63.158 0.00 0.00 0.00 2.90
3880 4710 2.060980 GGGGTGCTCTCGTCCATCT 61.061 63.158 0.00 0.00 0.00 2.90
3881 4711 2.501610 GGGGTGCTCTCGTCCATC 59.498 66.667 0.00 0.00 0.00 3.51
3882 4712 3.083997 GGGGGTGCTCTCGTCCAT 61.084 66.667 0.00 0.00 0.00 3.41
3896 4726 2.227865 CAGAAACACATTTACACGGGGG 59.772 50.000 0.00 0.00 0.00 5.40
3897 4727 2.351350 GCAGAAACACATTTACACGGGG 60.351 50.000 0.00 0.00 0.00 5.73
3898 4728 2.292016 TGCAGAAACACATTTACACGGG 59.708 45.455 0.00 0.00 0.00 5.28
3899 4729 3.617540 TGCAGAAACACATTTACACGG 57.382 42.857 0.00 0.00 0.00 4.94
3900 4730 4.437495 CAGTTGCAGAAACACATTTACACG 59.563 41.667 0.00 0.00 41.61 4.49
3901 4731 5.577835 TCAGTTGCAGAAACACATTTACAC 58.422 37.500 0.00 0.00 41.61 2.90
3902 4732 5.356751 ACTCAGTTGCAGAAACACATTTACA 59.643 36.000 0.00 0.00 41.61 2.41
3903 4733 5.821204 ACTCAGTTGCAGAAACACATTTAC 58.179 37.500 0.00 0.00 41.61 2.01
3904 4734 5.822519 AGACTCAGTTGCAGAAACACATTTA 59.177 36.000 0.00 0.00 41.61 1.40
3905 4735 4.641989 AGACTCAGTTGCAGAAACACATTT 59.358 37.500 0.00 0.00 41.61 2.32
3906 4736 4.202441 AGACTCAGTTGCAGAAACACATT 58.798 39.130 0.00 0.00 41.61 2.71
3907 4737 3.813443 AGACTCAGTTGCAGAAACACAT 58.187 40.909 0.00 0.00 41.61 3.21
3908 4738 3.266510 AGACTCAGTTGCAGAAACACA 57.733 42.857 0.00 0.00 41.61 3.72
3909 4739 4.142600 ACAAAGACTCAGTTGCAGAAACAC 60.143 41.667 0.00 0.00 41.61 3.32
3910 4740 4.009675 ACAAAGACTCAGTTGCAGAAACA 58.990 39.130 0.00 0.00 41.61 2.83
3911 4741 4.622701 ACAAAGACTCAGTTGCAGAAAC 57.377 40.909 0.00 0.00 39.24 2.78
3912 4742 5.640732 GAAACAAAGACTCAGTTGCAGAAA 58.359 37.500 0.00 0.00 0.00 2.52
3913 4743 4.201812 CGAAACAAAGACTCAGTTGCAGAA 60.202 41.667 0.00 0.00 0.00 3.02
3914 4744 3.309682 CGAAACAAAGACTCAGTTGCAGA 59.690 43.478 0.00 0.00 0.00 4.26
3915 4745 3.309682 TCGAAACAAAGACTCAGTTGCAG 59.690 43.478 0.00 0.00 0.00 4.41
3916 4746 3.266636 TCGAAACAAAGACTCAGTTGCA 58.733 40.909 0.00 0.00 0.00 4.08
3917 4747 3.944422 TCGAAACAAAGACTCAGTTGC 57.056 42.857 0.00 0.00 0.00 4.17
3918 4748 5.739161 CCTTTTCGAAACAAAGACTCAGTTG 59.261 40.000 10.79 0.00 33.69 3.16
3919 4749 5.646360 TCCTTTTCGAAACAAAGACTCAGTT 59.354 36.000 10.79 0.00 33.69 3.16
3920 4750 5.183228 TCCTTTTCGAAACAAAGACTCAGT 58.817 37.500 10.79 0.00 33.69 3.41
3921 4751 5.523916 TCTCCTTTTCGAAACAAAGACTCAG 59.476 40.000 10.79 1.78 33.69 3.35
3922 4752 5.424757 TCTCCTTTTCGAAACAAAGACTCA 58.575 37.500 10.79 0.00 33.69 3.41
3923 4753 5.524281 ACTCTCCTTTTCGAAACAAAGACTC 59.476 40.000 10.79 0.00 33.69 3.36
3924 4754 5.429130 ACTCTCCTTTTCGAAACAAAGACT 58.571 37.500 10.79 0.45 33.69 3.24
3925 4755 5.736486 ACTCTCCTTTTCGAAACAAAGAC 57.264 39.130 10.79 0.00 33.69 3.01
3926 4756 6.753107 AAACTCTCCTTTTCGAAACAAAGA 57.247 33.333 10.79 11.74 33.69 2.52
3927 4757 6.237569 GCAAAACTCTCCTTTTCGAAACAAAG 60.238 38.462 10.79 5.58 0.00 2.77
3928 4758 5.575218 GCAAAACTCTCCTTTTCGAAACAAA 59.425 36.000 10.79 0.00 0.00 2.83
3929 4759 5.099575 GCAAAACTCTCCTTTTCGAAACAA 58.900 37.500 10.79 0.00 0.00 2.83
3930 4760 4.156922 TGCAAAACTCTCCTTTTCGAAACA 59.843 37.500 10.79 1.51 0.00 2.83
3931 4761 4.668289 TGCAAAACTCTCCTTTTCGAAAC 58.332 39.130 10.79 0.00 0.00 2.78
3932 4762 4.974368 TGCAAAACTCTCCTTTTCGAAA 57.026 36.364 6.47 6.47 0.00 3.46
3933 4763 4.398044 AGTTGCAAAACTCTCCTTTTCGAA 59.602 37.500 0.00 0.00 0.00 3.71
3934 4764 3.945285 AGTTGCAAAACTCTCCTTTTCGA 59.055 39.130 0.00 0.00 0.00 3.71
3935 4765 4.037690 CAGTTGCAAAACTCTCCTTTTCG 58.962 43.478 0.00 0.00 0.00 3.46
3936 4766 4.998788 ACAGTTGCAAAACTCTCCTTTTC 58.001 39.130 0.00 0.00 0.00 2.29
3937 4767 4.706962 AGACAGTTGCAAAACTCTCCTTTT 59.293 37.500 0.00 0.00 0.00 2.27
3938 4768 4.096984 CAGACAGTTGCAAAACTCTCCTTT 59.903 41.667 0.00 0.00 0.00 3.11
3939 4769 3.629398 CAGACAGTTGCAAAACTCTCCTT 59.371 43.478 0.00 0.00 0.00 3.36
3940 4770 3.209410 CAGACAGTTGCAAAACTCTCCT 58.791 45.455 0.00 0.00 0.00 3.69
3941 4771 2.291741 CCAGACAGTTGCAAAACTCTCC 59.708 50.000 0.00 0.00 0.00 3.71
3942 4772 2.287248 GCCAGACAGTTGCAAAACTCTC 60.287 50.000 0.00 0.00 0.00 3.20
3943 4773 1.678101 GCCAGACAGTTGCAAAACTCT 59.322 47.619 0.00 0.00 0.00 3.24
3944 4774 1.678101 AGCCAGACAGTTGCAAAACTC 59.322 47.619 0.00 0.00 0.00 3.01
3945 4775 1.767759 AGCCAGACAGTTGCAAAACT 58.232 45.000 0.00 0.00 0.00 2.66
3946 4776 2.584492 AAGCCAGACAGTTGCAAAAC 57.416 45.000 0.00 0.00 0.00 2.43
3947 4777 3.608316 AAAAGCCAGACAGTTGCAAAA 57.392 38.095 0.00 0.00 0.00 2.44
3948 4778 3.260740 CAAAAAGCCAGACAGTTGCAAA 58.739 40.909 0.00 0.00 0.00 3.68
3949 4779 2.891112 CAAAAAGCCAGACAGTTGCAA 58.109 42.857 0.00 0.00 0.00 4.08
3950 4780 1.471327 GCAAAAAGCCAGACAGTTGCA 60.471 47.619 0.00 0.00 40.74 4.08
3951 4781 1.211743 GCAAAAAGCCAGACAGTTGC 58.788 50.000 0.00 0.00 37.23 4.17
3952 4782 2.466846 CTGCAAAAAGCCAGACAGTTG 58.533 47.619 0.00 0.00 44.83 3.16
3953 4783 1.202452 GCTGCAAAAAGCCAGACAGTT 60.202 47.619 0.00 0.00 44.83 3.16
3954 4784 0.386838 GCTGCAAAAAGCCAGACAGT 59.613 50.000 0.00 0.00 44.83 3.55
3955 4785 0.662374 CGCTGCAAAAAGCCAGACAG 60.662 55.000 0.00 0.00 44.83 3.51
3956 4786 1.359833 CGCTGCAAAAAGCCAGACA 59.640 52.632 0.00 0.00 44.83 3.41
3957 4787 1.372128 CCGCTGCAAAAAGCCAGAC 60.372 57.895 0.00 0.00 44.83 3.51
3958 4788 3.041701 CCGCTGCAAAAAGCCAGA 58.958 55.556 0.00 0.00 44.83 3.86
3959 4789 2.735857 GCCGCTGCAAAAAGCCAG 60.736 61.111 0.00 0.00 44.83 4.85
3960 4790 3.225798 AGCCGCTGCAAAAAGCCA 61.226 55.556 2.05 0.00 44.83 4.75
3961 4791 2.735857 CAGCCGCTGCAAAAAGCC 60.736 61.111 7.61 0.00 44.83 4.35
3962 4792 2.028043 ACAGCCGCTGCAAAAAGC 59.972 55.556 20.56 0.00 45.96 3.51
3963 4793 0.936297 GTCACAGCCGCTGCAAAAAG 60.936 55.000 20.56 4.04 41.13 2.27
3964 4794 1.065600 GTCACAGCCGCTGCAAAAA 59.934 52.632 20.56 0.00 41.13 1.94
3965 4795 1.785041 GAGTCACAGCCGCTGCAAAA 61.785 55.000 20.56 0.45 41.13 2.44
3966 4796 2.203195 AGTCACAGCCGCTGCAAA 60.203 55.556 20.56 3.07 41.13 3.68
3967 4797 2.666190 GAGTCACAGCCGCTGCAA 60.666 61.111 20.56 5.74 41.13 4.08
3970 4800 3.108289 CACGAGTCACAGCCGCTG 61.108 66.667 19.08 19.08 37.52 5.18
4000 4830 2.974698 GATTCCTGGCCGCCATCG 60.975 66.667 13.86 6.42 30.82 3.84
4001 4831 1.599240 GAGATTCCTGGCCGCCATC 60.599 63.158 13.86 7.64 30.82 3.51
4002 4832 2.512896 GAGATTCCTGGCCGCCAT 59.487 61.111 13.86 0.00 30.82 4.40
4003 4833 4.161295 CGAGATTCCTGGCCGCCA 62.161 66.667 12.67 12.67 0.00 5.69
4008 4838 3.170490 ATCCGGCGAGATTCCTGGC 62.170 63.158 9.30 0.00 42.49 4.85
4009 4839 1.005630 GATCCGGCGAGATTCCTGG 60.006 63.158 9.30 0.00 0.00 4.45
4010 4840 1.005630 GGATCCGGCGAGATTCCTG 60.006 63.158 9.30 0.00 0.00 3.86
4011 4841 2.565645 CGGATCCGGCGAGATTCCT 61.566 63.158 26.95 0.00 35.56 3.36
4012 4842 2.049063 CGGATCCGGCGAGATTCC 60.049 66.667 26.95 7.87 35.56 3.01
4013 4843 1.371881 GTCGGATCCGGCGAGATTC 60.372 63.158 32.79 7.55 40.25 2.52
4014 4844 2.728817 GTCGGATCCGGCGAGATT 59.271 61.111 32.79 0.00 40.25 2.40
4044 4874 4.785453 GTTCCTGCCTCCTGCCCG 62.785 72.222 0.00 0.00 40.16 6.13
4045 4875 4.785453 CGTTCCTGCCTCCTGCCC 62.785 72.222 0.00 0.00 40.16 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.