Multiple sequence alignment - TraesCS6D01G302400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G302400 chr6D 100.000 4024 0 0 1 4024 411669462 411665439 0.000000e+00 7432.0
1 TraesCS6D01G302400 chr6D 97.368 190 1 4 3837 4024 248562738 248562551 1.800000e-83 320.0
2 TraesCS6D01G302400 chr6A 91.684 3307 201 41 1 3265 556554280 556551006 0.000000e+00 4516.0
3 TraesCS6D01G302400 chr6A 79.083 349 37 12 3484 3821 556550876 556550553 1.470000e-49 207.0
4 TraesCS6D01G302400 chr6A 86.813 91 8 1 3330 3416 556551002 556550912 9.200000e-17 99.0
5 TraesCS6D01G302400 chr6B 91.801 2732 127 53 615 3295 619026172 619023487 0.000000e+00 3714.0
6 TraesCS6D01G302400 chrUn 100.000 178 0 0 3847 4024 79883481 79883304 3.000000e-86 329.0
7 TraesCS6D01G302400 chr4D 100.000 178 0 0 3847 4024 307365935 307366112 3.000000e-86 329.0
8 TraesCS6D01G302400 chr5B 99.448 181 0 1 3844 4024 308528994 308528815 1.080000e-85 327.0
9 TraesCS6D01G302400 chr1D 98.907 183 1 1 3843 4024 408597840 408597658 3.880000e-85 326.0
10 TraesCS6D01G302400 chr1D 94.366 213 4 7 3814 4024 191864765 191864971 1.800000e-83 320.0
11 TraesCS6D01G302400 chr1D 97.849 186 3 1 3840 4024 388298764 388298579 1.800000e-83 320.0
12 TraesCS6D01G302400 chr1D 97.849 186 2 2 3840 4024 478324264 478324080 1.800000e-83 320.0
13 TraesCS6D01G302400 chr5D 99.438 178 0 1 3847 4024 517943950 517943774 5.020000e-84 322.0
14 TraesCS6D01G302400 chr2D 88.710 62 7 0 3315 3376 372816192 372816131 4.310000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G302400 chr6D 411665439 411669462 4023 True 7432.000000 7432 100.000 1 4024 1 chr6D.!!$R2 4023
1 TraesCS6D01G302400 chr6A 556550553 556554280 3727 True 1607.333333 4516 85.860 1 3821 3 chr6A.!!$R1 3820
2 TraesCS6D01G302400 chr6B 619023487 619026172 2685 True 3714.000000 3714 91.801 615 3295 1 chr6B.!!$R1 2680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 852 0.035458 AGAAGGGCAGAGGAAACACG 59.965 55.0 0.00 0.00 0.00 4.49 F
2088 2133 0.176910 GGTTCTACTGCAGGAGCTCC 59.823 60.0 26.22 26.22 42.74 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2618 2674 0.249955 TTCCGATGCATGCTCTGTGA 59.750 50.0 20.33 6.34 0.00 3.58 R
3828 3925 0.029035 AATAGCGACGTCGTAGGCTG 59.971 55.0 35.48 9.81 42.22 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 64 1.178276 ACGCCTCCCGATCTATGATC 58.822 55.000 0.00 0.00 41.02 2.92
67 70 1.804748 TCCCGATCTATGATCGTGTCG 59.195 52.381 22.71 11.25 39.67 4.35
68 71 1.804748 CCCGATCTATGATCGTGTCGA 59.195 52.381 22.71 0.00 39.67 4.20
79 82 1.771565 TCGTGTCGATGATAACCCCT 58.228 50.000 0.00 0.00 0.00 4.79
80 83 1.407618 TCGTGTCGATGATAACCCCTG 59.592 52.381 0.00 0.00 0.00 4.45
97 100 0.037303 CTGAGGTTGATGGTGGCAGT 59.963 55.000 0.00 0.00 0.00 4.40
102 105 1.895131 GGTTGATGGTGGCAGTTTGAT 59.105 47.619 0.00 0.00 0.00 2.57
107 110 0.827089 TGGTGGCAGTTTGATGTGGG 60.827 55.000 0.00 0.00 0.00 4.61
109 112 1.327303 GTGGCAGTTTGATGTGGGAA 58.673 50.000 0.00 0.00 0.00 3.97
111 114 1.686052 TGGCAGTTTGATGTGGGAAAC 59.314 47.619 0.00 0.00 33.11 2.78
132 140 2.000447 GTTGCGTCCATCTACTTCACC 59.000 52.381 0.00 0.00 0.00 4.02
134 142 1.621317 TGCGTCCATCTACTTCACCAA 59.379 47.619 0.00 0.00 0.00 3.67
155 163 0.037734 ACCCCCTTTTCGACCATCAC 59.962 55.000 0.00 0.00 0.00 3.06
164 172 4.351874 TTTCGACCATCACTTCTCCTTT 57.648 40.909 0.00 0.00 0.00 3.11
165 173 3.319137 TCGACCATCACTTCTCCTTTG 57.681 47.619 0.00 0.00 0.00 2.77
167 175 2.996621 CGACCATCACTTCTCCTTTGTC 59.003 50.000 0.00 0.00 0.00 3.18
170 178 2.350522 CATCACTTCTCCTTTGTCCCG 58.649 52.381 0.00 0.00 0.00 5.14
174 182 1.766496 ACTTCTCCTTTGTCCCGTCAA 59.234 47.619 0.00 0.00 0.00 3.18
183 191 3.695830 TTGTCCCGTCAAGCTTTATCT 57.304 42.857 0.00 0.00 0.00 1.98
189 197 5.692654 GTCCCGTCAAGCTTTATCTATCTTC 59.307 44.000 0.00 0.00 0.00 2.87
190 198 5.362717 TCCCGTCAAGCTTTATCTATCTTCA 59.637 40.000 0.00 0.00 0.00 3.02
194 202 7.921214 CCGTCAAGCTTTATCTATCTTCAGTTA 59.079 37.037 0.00 0.00 0.00 2.24
214 223 2.509569 ACAAATCACGCCAACACCATA 58.490 42.857 0.00 0.00 0.00 2.74
218 227 2.779755 TCACGCCAACACCATATTCT 57.220 45.000 0.00 0.00 0.00 2.40
221 230 0.937304 CGCCAACACCATATTCTCCG 59.063 55.000 0.00 0.00 0.00 4.63
223 232 2.365582 GCCAACACCATATTCTCCGTT 58.634 47.619 0.00 0.00 0.00 4.44
314 323 6.671614 ATGTTAACTCACGAAAAGACACAA 57.328 33.333 7.22 0.00 0.00 3.33
318 327 7.483375 TGTTAACTCACGAAAAGACACAAAATG 59.517 33.333 7.22 0.00 0.00 2.32
336 345 6.886459 ACAAAATGTCTATGTGAGGCTACATT 59.114 34.615 12.60 8.71 41.31 2.71
396 405 3.666345 AGTCTCGTGGTTAGTAGGGAT 57.334 47.619 0.00 0.00 0.00 3.85
403 412 6.264744 TCTCGTGGTTAGTAGGGATTAGAATG 59.735 42.308 0.00 0.00 0.00 2.67
429 438 7.010830 GGAGGTTGGACTATAATTTGTACGAAC 59.989 40.741 0.00 0.00 0.00 3.95
442 451 4.970662 TGTACGAACGAAGCCTACTAAT 57.029 40.909 0.14 0.00 0.00 1.73
444 453 5.713025 TGTACGAACGAAGCCTACTAATTT 58.287 37.500 0.14 0.00 0.00 1.82
445 454 5.801947 TGTACGAACGAAGCCTACTAATTTC 59.198 40.000 0.14 0.00 0.00 2.17
446 455 5.069501 ACGAACGAAGCCTACTAATTTCT 57.930 39.130 0.14 0.00 0.00 2.52
505 514 7.974501 TGAATGAGTAGACTTTATCGAACTTCC 59.025 37.037 0.00 0.00 30.98 3.46
529 538 4.227512 TGCGTCTTAACTCGTCACTTTA 57.772 40.909 0.00 0.00 0.00 1.85
532 541 4.028670 GCGTCTTAACTCGTCACTTTATCG 60.029 45.833 0.00 0.00 0.00 2.92
534 543 4.264849 GTCTTAACTCGTCACTTTATCGGC 59.735 45.833 0.00 0.00 0.00 5.54
535 544 1.625616 AACTCGTCACTTTATCGGCG 58.374 50.000 0.00 0.00 0.00 6.46
545 554 1.662122 CTTTATCGGCGGTGTGGTTAC 59.338 52.381 7.21 0.00 0.00 2.50
557 566 3.381949 GTGTGGTTACCTATGATCGAGC 58.618 50.000 2.07 0.00 0.00 5.03
560 569 2.953648 TGGTTACCTATGATCGAGCGAA 59.046 45.455 2.07 0.00 0.00 4.70
580 589 8.782533 AGCGAAGTCTGTTTTAAACATTTAAG 57.217 30.769 11.12 0.00 41.26 1.85
581 590 7.860872 AGCGAAGTCTGTTTTAAACATTTAAGG 59.139 33.333 11.12 0.00 41.26 2.69
585 594 7.777095 AGTCTGTTTTAAACATTTAAGGCACA 58.223 30.769 11.12 2.77 41.26 4.57
586 595 7.704899 AGTCTGTTTTAAACATTTAAGGCACAC 59.295 33.333 11.12 0.00 41.26 3.82
588 597 6.331061 TGTTTTAAACATTTAAGGCACACGT 58.669 32.000 6.41 0.00 36.25 4.49
590 599 5.752892 TTAAACATTTAAGGCACACGTCA 57.247 34.783 0.00 0.00 0.00 4.35
596 605 0.241749 TAAGGCACACGTCACGTAGG 59.758 55.000 0.41 0.00 38.32 3.18
617 626 3.243907 GGAATCGACCCCTAACATCTCAG 60.244 52.174 0.00 0.00 0.00 3.35
668 677 2.701551 TCCCGATCATTATCAACCCCT 58.298 47.619 0.00 0.00 31.93 4.79
669 678 2.637872 TCCCGATCATTATCAACCCCTC 59.362 50.000 0.00 0.00 31.93 4.30
670 679 2.371841 CCCGATCATTATCAACCCCTCA 59.628 50.000 0.00 0.00 31.93 3.86
681 700 2.163601 AACCCCTCAACGAGCCGTAC 62.164 60.000 0.62 0.00 39.99 3.67
686 705 1.064505 CCTCAACGAGCCGTACGAATA 59.935 52.381 18.76 0.00 39.99 1.75
716 735 8.974408 GGTTTAAAACAAATTTCACTCGCTATT 58.026 29.630 0.00 0.00 32.27 1.73
723 742 6.428159 ACAAATTTCACTCGCTATTGTCTCTT 59.572 34.615 0.00 0.00 0.00 2.85
734 753 5.233902 CGCTATTGTCTCTTGAGGAATTCAG 59.766 44.000 7.93 0.00 37.07 3.02
740 759 6.197903 TGTCTCTTGAGGAATTCAGGATAGA 58.802 40.000 7.93 2.61 40.65 1.98
743 762 6.269538 TCTCTTGAGGAATTCAGGATAGATGG 59.730 42.308 7.93 0.00 40.65 3.51
744 763 5.907662 TCTTGAGGAATTCAGGATAGATGGT 59.092 40.000 7.93 0.00 37.03 3.55
745 764 5.815233 TGAGGAATTCAGGATAGATGGTC 57.185 43.478 7.93 0.00 0.00 4.02
746 765 4.281941 TGAGGAATTCAGGATAGATGGTCG 59.718 45.833 7.93 0.00 0.00 4.79
747 766 4.483950 AGGAATTCAGGATAGATGGTCGA 58.516 43.478 7.93 0.00 0.00 4.20
748 767 4.901849 AGGAATTCAGGATAGATGGTCGAA 59.098 41.667 7.93 0.00 0.00 3.71
749 768 4.991687 GGAATTCAGGATAGATGGTCGAAC 59.008 45.833 7.93 0.00 0.00 3.95
750 769 4.608948 ATTCAGGATAGATGGTCGAACC 57.391 45.455 0.00 0.00 39.22 3.62
773 792 1.207089 TGTATGTGTGGCTACCTGCTC 59.793 52.381 0.00 0.00 42.39 4.26
781 800 1.605058 GGCTACCTGCTCTTGACGGA 61.605 60.000 0.00 0.00 42.39 4.69
796 815 0.239347 ACGGAAGTAGGACAACGACG 59.761 55.000 0.00 0.00 46.88 5.12
833 852 0.035458 AGAAGGGCAGAGGAAACACG 59.965 55.000 0.00 0.00 0.00 4.49
961 985 0.941542 TTTCGAAGCTTTGTCCCGTG 59.058 50.000 13.49 0.00 0.00 4.94
1016 1040 1.004440 GCTGAACAGGGCGAAGACT 60.004 57.895 3.99 0.00 32.70 3.24
1339 1369 3.946907 CGACAAGTTCGTCCCCAC 58.053 61.111 0.00 0.00 43.24 4.61
1340 1370 1.666872 CGACAAGTTCGTCCCCACC 60.667 63.158 0.00 0.00 43.24 4.61
1341 1371 1.302271 GACAAGTTCGTCCCCACCC 60.302 63.158 0.00 0.00 0.00 4.61
1510 1540 2.125592 AGCAGAAGCAGAGCGAGC 60.126 61.111 0.00 0.00 45.49 5.03
1524 1554 2.983433 CGAGCTCGCCATGAAGATT 58.017 52.632 25.07 0.00 0.00 2.40
1591 1625 3.425938 CTCAATTGCGCGACGGAGC 62.426 63.158 12.10 0.00 39.66 4.70
1629 1668 3.181456 CCCTGACCTCTGATTCTGATTCC 60.181 52.174 0.00 0.00 0.00 3.01
1866 1905 2.978156 AGTGAGCCCCAAATCTTTCA 57.022 45.000 0.00 0.00 0.00 2.69
1867 1906 2.800250 AGTGAGCCCCAAATCTTTCAG 58.200 47.619 0.00 0.00 0.00 3.02
1890 1935 1.265365 GACTCACAGTTCTTGCTTGCC 59.735 52.381 0.00 0.00 0.00 4.52
1894 1939 1.534595 CACAGTTCTTGCTTGCCTCTC 59.465 52.381 0.00 0.00 0.00 3.20
1917 1962 2.798283 TCGGTCACAAATCGAAGTGAAC 59.202 45.455 18.58 18.58 46.33 3.18
2088 2133 0.176910 GGTTCTACTGCAGGAGCTCC 59.823 60.000 26.22 26.22 42.74 4.70
2135 2180 4.022849 CGCCAAGGTGAAAGAAAGAAAGAT 60.023 41.667 0.00 0.00 0.00 2.40
2137 2182 6.127897 CGCCAAGGTGAAAGAAAGAAAGATAT 60.128 38.462 0.00 0.00 0.00 1.63
2142 2187 7.461749 AGGTGAAAGAAAGAAAGATATGACCA 58.538 34.615 0.00 0.00 0.00 4.02
2393 2438 2.037620 CTGCTCCCCGGATCTTCTGG 62.038 65.000 0.73 0.00 42.66 3.86
2428 2482 3.008375 TGCTGCTCTGGTTCAGTAGAAAT 59.992 43.478 0.00 0.00 35.08 2.17
2430 2484 4.094146 GCTGCTCTGGTTCAGTAGAAATTC 59.906 45.833 0.00 0.00 35.08 2.17
2616 2672 3.019964 GTCAGTTCATGGCCACACA 57.980 52.632 8.16 0.00 0.00 3.72
2617 2673 0.877071 GTCAGTTCATGGCCACACAG 59.123 55.000 8.16 2.18 0.00 3.66
2618 2674 0.473755 TCAGTTCATGGCCACACAGT 59.526 50.000 8.16 0.00 0.00 3.55
2634 2690 0.651031 CAGTCACAGAGCATGCATCG 59.349 55.000 21.98 9.60 0.00 3.84
2684 2741 2.541466 ACATTCTTCTTCTCCGGGTCT 58.459 47.619 0.00 0.00 0.00 3.85
2688 2745 1.535444 TTCTTCTCCGGGTCTGGCA 60.535 57.895 0.00 0.00 0.00 4.92
2703 2760 2.261671 GCACCAGGTCGACATCGT 59.738 61.111 18.91 6.21 40.80 3.73
2817 2874 1.511305 TCCATGCGGACTTCGAGAC 59.489 57.895 0.00 0.00 42.43 3.36
2887 2944 1.811266 CTGACGATGGCACCTTCCG 60.811 63.158 0.00 0.00 0.00 4.30
2898 2955 1.078143 ACCTTCCGCTCCAGCATTC 60.078 57.895 0.00 0.00 42.21 2.67
2926 2983 4.896562 TCTTGTACAGCGAAAATACACG 57.103 40.909 0.00 0.00 0.00 4.49
2936 2993 2.474526 CGAAAATACACGCCTGAAGCTG 60.475 50.000 0.00 0.00 40.39 4.24
2984 3041 1.281656 GACCCCGAAAAACACAGCG 59.718 57.895 0.00 0.00 0.00 5.18
2997 3054 0.457443 CACAGCGACAGAGCCATCTA 59.543 55.000 0.00 0.00 38.01 1.98
3080 3144 4.887655 TCTTTCTGTCACTTTTTCCCCTTC 59.112 41.667 0.00 0.00 0.00 3.46
3103 3171 7.281040 TCTGAATGATTCTGTTTTCTTGCTT 57.719 32.000 6.73 0.00 0.00 3.91
3123 3191 5.067674 TGCTTTGCAACACTAAATTCTGAGT 59.932 36.000 0.00 0.00 34.76 3.41
3134 3202 8.945758 CACTAAATTCTGAGTGTCTTGATTTG 57.054 34.615 6.85 0.00 38.61 2.32
3145 3214 3.129462 TGTCTTGATTTGTTGACGCCAAA 59.871 39.130 0.00 0.00 36.34 3.28
3156 3238 2.329379 TGACGCCAAAAACACAACAAC 58.671 42.857 0.00 0.00 0.00 3.32
3158 3240 2.333014 ACGCCAAAAACACAACAACAG 58.667 42.857 0.00 0.00 0.00 3.16
3184 3266 7.271511 GGTCATATGGAAGATGGATATCTCAC 58.728 42.308 2.13 0.00 42.80 3.51
3195 3277 7.337167 AGATGGATATCTCACTGGAATAATGC 58.663 38.462 2.05 0.00 39.46 3.56
3295 3377 2.421314 GGGGCAAAAACGCTGCTT 59.579 55.556 0.00 0.00 39.82 3.91
3296 3378 1.664649 GGGGCAAAAACGCTGCTTC 60.665 57.895 0.00 0.00 39.82 3.86
3297 3379 1.363807 GGGCAAAAACGCTGCTTCT 59.636 52.632 0.00 0.00 39.82 2.85
3298 3380 0.596082 GGGCAAAAACGCTGCTTCTA 59.404 50.000 0.00 0.00 39.82 2.10
3299 3381 1.666023 GGGCAAAAACGCTGCTTCTAC 60.666 52.381 0.00 0.00 39.82 2.59
3300 3382 1.266989 GGCAAAAACGCTGCTTCTACT 59.733 47.619 0.00 0.00 39.82 2.57
3301 3383 2.575363 GCAAAAACGCTGCTTCTACTC 58.425 47.619 0.00 0.00 36.84 2.59
3302 3384 2.665794 GCAAAAACGCTGCTTCTACTCC 60.666 50.000 0.00 0.00 36.84 3.85
3303 3385 1.429463 AAAACGCTGCTTCTACTCCG 58.571 50.000 0.00 0.00 0.00 4.63
3304 3386 0.601558 AAACGCTGCTTCTACTCCGA 59.398 50.000 0.00 0.00 0.00 4.55
3305 3387 0.171455 AACGCTGCTTCTACTCCGAG 59.829 55.000 0.00 0.00 0.00 4.63
3306 3388 0.677098 ACGCTGCTTCTACTCCGAGA 60.677 55.000 1.33 0.00 0.00 4.04
3307 3389 0.452184 CGCTGCTTCTACTCCGAGAA 59.548 55.000 1.33 0.00 34.30 2.87
3308 3390 1.066303 CGCTGCTTCTACTCCGAGAAT 59.934 52.381 1.33 0.00 34.95 2.40
3309 3391 2.290916 CGCTGCTTCTACTCCGAGAATA 59.709 50.000 1.33 0.00 34.95 1.75
3310 3392 3.608241 CGCTGCTTCTACTCCGAGAATAG 60.608 52.174 1.33 0.00 34.95 1.73
3311 3393 3.305064 GCTGCTTCTACTCCGAGAATAGG 60.305 52.174 1.33 0.00 34.95 2.57
3312 3394 4.138290 CTGCTTCTACTCCGAGAATAGGA 58.862 47.826 1.33 0.00 37.65 2.94
3313 3395 4.730966 TGCTTCTACTCCGAGAATAGGAT 58.269 43.478 1.33 0.00 39.88 3.24
3314 3396 5.877491 TGCTTCTACTCCGAGAATAGGATA 58.123 41.667 1.33 0.00 39.88 2.59
3315 3397 5.941058 TGCTTCTACTCCGAGAATAGGATAG 59.059 44.000 1.33 0.00 39.88 2.08
3316 3398 5.163693 GCTTCTACTCCGAGAATAGGATAGC 60.164 48.000 1.33 2.34 39.88 2.97
3317 3399 5.765576 TCTACTCCGAGAATAGGATAGCT 57.234 43.478 1.33 0.00 39.88 3.32
3318 3400 5.492895 TCTACTCCGAGAATAGGATAGCTG 58.507 45.833 1.33 0.00 39.88 4.24
3319 3401 2.823154 ACTCCGAGAATAGGATAGCTGC 59.177 50.000 1.33 0.00 39.88 5.25
3320 3402 2.822561 CTCCGAGAATAGGATAGCTGCA 59.177 50.000 1.02 0.00 39.88 4.41
3321 3403 3.230976 TCCGAGAATAGGATAGCTGCAA 58.769 45.455 1.02 0.00 33.82 4.08
3322 3404 3.641436 TCCGAGAATAGGATAGCTGCAAA 59.359 43.478 1.02 0.00 33.82 3.68
3323 3405 4.284490 TCCGAGAATAGGATAGCTGCAAAT 59.716 41.667 1.02 0.00 33.82 2.32
3324 3406 4.999950 CCGAGAATAGGATAGCTGCAAATT 59.000 41.667 1.02 0.00 29.15 1.82
3325 3407 6.014584 TCCGAGAATAGGATAGCTGCAAATTA 60.015 38.462 1.02 0.00 33.82 1.40
3326 3408 6.312426 CCGAGAATAGGATAGCTGCAAATTAG 59.688 42.308 1.02 0.00 29.15 1.73
3327 3409 7.093354 CGAGAATAGGATAGCTGCAAATTAGA 58.907 38.462 1.02 0.00 0.00 2.10
3328 3410 7.275341 CGAGAATAGGATAGCTGCAAATTAGAG 59.725 40.741 1.02 0.00 0.00 2.43
3335 3417 2.490903 AGCTGCAAATTAGAGCACCAAG 59.509 45.455 1.02 0.00 36.62 3.61
3364 3446 1.028905 TTTGCAACACTTAAGCGGCT 58.971 45.000 0.00 0.00 0.00 5.52
3367 3449 0.110192 GCAACACTTAAGCGGCTGTC 60.110 55.000 1.81 0.00 0.00 3.51
3368 3450 0.163788 CAACACTTAAGCGGCTGTCG 59.836 55.000 1.81 0.00 42.76 4.35
3383 3469 1.087202 TGTCGCAAAACAGCAGTCGT 61.087 50.000 0.00 0.00 0.00 4.34
3406 3492 2.358125 CGTCCAACCGCCACATGA 60.358 61.111 0.00 0.00 0.00 3.07
3416 3502 1.595093 CGCCACATGAAACCTTCCCC 61.595 60.000 0.00 0.00 0.00 4.81
3417 3503 0.251787 GCCACATGAAACCTTCCCCT 60.252 55.000 0.00 0.00 0.00 4.79
3418 3504 1.827245 GCCACATGAAACCTTCCCCTT 60.827 52.381 0.00 0.00 0.00 3.95
3419 3505 2.171003 CCACATGAAACCTTCCCCTTC 58.829 52.381 0.00 0.00 0.00 3.46
3420 3506 2.171003 CACATGAAACCTTCCCCTTCC 58.829 52.381 0.00 0.00 0.00 3.46
3421 3507 1.077169 ACATGAAACCTTCCCCTTCCC 59.923 52.381 0.00 0.00 0.00 3.97
3422 3508 1.077005 CATGAAACCTTCCCCTTCCCA 59.923 52.381 0.00 0.00 0.00 4.37
3423 3509 1.466858 TGAAACCTTCCCCTTCCCAT 58.533 50.000 0.00 0.00 0.00 4.00
3424 3510 1.357761 TGAAACCTTCCCCTTCCCATC 59.642 52.381 0.00 0.00 0.00 3.51
3425 3511 0.710588 AAACCTTCCCCTTCCCATCC 59.289 55.000 0.00 0.00 0.00 3.51
3426 3512 1.571773 AACCTTCCCCTTCCCATCCG 61.572 60.000 0.00 0.00 0.00 4.18
3427 3513 2.001269 CCTTCCCCTTCCCATCCGT 61.001 63.158 0.00 0.00 0.00 4.69
3428 3514 1.224592 CTTCCCCTTCCCATCCGTG 59.775 63.158 0.00 0.00 0.00 4.94
3429 3515 2.893682 CTTCCCCTTCCCATCCGTGC 62.894 65.000 0.00 0.00 0.00 5.34
3430 3516 3.727258 CCCCTTCCCATCCGTGCA 61.727 66.667 0.00 0.00 0.00 4.57
3431 3517 2.438434 CCCTTCCCATCCGTGCAC 60.438 66.667 6.82 6.82 0.00 4.57
3432 3518 2.438434 CCTTCCCATCCGTGCACC 60.438 66.667 12.15 0.00 0.00 5.01
3433 3519 2.350895 CTTCCCATCCGTGCACCA 59.649 61.111 12.15 0.00 0.00 4.17
3434 3520 2.033448 TTCCCATCCGTGCACCAC 59.967 61.111 12.15 0.00 0.00 4.16
3435 3521 3.561120 TTCCCATCCGTGCACCACC 62.561 63.158 12.15 0.00 0.00 4.61
3436 3522 4.033776 CCCATCCGTGCACCACCT 62.034 66.667 12.15 0.00 0.00 4.00
3437 3523 2.436646 CCATCCGTGCACCACCTC 60.437 66.667 12.15 0.00 0.00 3.85
3438 3524 2.436646 CATCCGTGCACCACCTCC 60.437 66.667 12.15 0.00 0.00 4.30
3439 3525 4.082523 ATCCGTGCACCACCTCCG 62.083 66.667 12.15 0.00 0.00 4.63
3533 3619 4.114997 CGTGCAACCCCATTCCGC 62.115 66.667 0.00 0.00 0.00 5.54
3544 3630 4.162690 ATTCCGCCGCTCCACCTC 62.163 66.667 0.00 0.00 0.00 3.85
3584 3672 2.180769 CGACTGATTCGGCCGTCA 59.819 61.111 27.15 21.21 44.60 4.35
3588 3676 0.949105 ACTGATTCGGCCGTCACAAC 60.949 55.000 27.15 12.13 0.00 3.32
3591 3679 0.669318 GATTCGGCCGTCACAACTCA 60.669 55.000 27.15 0.00 0.00 3.41
3592 3680 0.949105 ATTCGGCCGTCACAACTCAC 60.949 55.000 27.15 0.00 0.00 3.51
3593 3681 2.279851 CGGCCGTCACAACTCACA 60.280 61.111 19.50 0.00 0.00 3.58
3594 3682 1.885388 CGGCCGTCACAACTCACAA 60.885 57.895 19.50 0.00 0.00 3.33
3595 3683 1.831389 CGGCCGTCACAACTCACAAG 61.831 60.000 19.50 0.00 0.00 3.16
3596 3684 0.814010 GGCCGTCACAACTCACAAGT 60.814 55.000 0.00 0.00 37.32 3.16
3597 3685 0.582005 GCCGTCACAACTCACAAGTC 59.418 55.000 0.00 0.00 33.48 3.01
3598 3686 1.217882 CCGTCACAACTCACAAGTCC 58.782 55.000 0.00 0.00 33.48 3.85
3607 3695 2.257409 CTCACAAGTCCCCCATCCCG 62.257 65.000 0.00 0.00 0.00 5.14
3632 3720 3.823330 ATCACCTCCGCGTCGTCC 61.823 66.667 4.92 0.00 0.00 4.79
3643 3731 4.131088 GTCGTCCCCGCAGACCTC 62.131 72.222 0.00 0.00 32.91 3.85
3644 3732 4.671590 TCGTCCCCGCAGACCTCA 62.672 66.667 0.00 0.00 32.91 3.86
3645 3733 3.691342 CGTCCCCGCAGACCTCAA 61.691 66.667 0.00 0.00 32.91 3.02
3647 3735 1.671379 GTCCCCGCAGACCTCAAAC 60.671 63.158 0.00 0.00 0.00 2.93
3648 3736 2.742372 CCCCGCAGACCTCAAACG 60.742 66.667 0.00 0.00 0.00 3.60
3649 3737 2.342279 CCCGCAGACCTCAAACGA 59.658 61.111 0.00 0.00 0.00 3.85
3650 3738 2.027625 CCCGCAGACCTCAAACGAC 61.028 63.158 0.00 0.00 0.00 4.34
3651 3739 1.300620 CCGCAGACCTCAAACGACA 60.301 57.895 0.00 0.00 0.00 4.35
3652 3740 0.670546 CCGCAGACCTCAAACGACAT 60.671 55.000 0.00 0.00 0.00 3.06
3653 3741 0.439985 CGCAGACCTCAAACGACATG 59.560 55.000 0.00 0.00 0.00 3.21
3654 3742 0.798776 GCAGACCTCAAACGACATGG 59.201 55.000 0.00 0.00 0.00 3.66
3656 3744 0.321653 AGACCTCAAACGACATGGCC 60.322 55.000 0.00 0.00 0.00 5.36
3657 3745 1.635663 GACCTCAAACGACATGGCCG 61.636 60.000 0.00 8.00 0.00 6.13
3658 3746 1.671054 CCTCAAACGACATGGCCGT 60.671 57.895 9.20 9.20 42.61 5.68
3666 3762 1.517832 GACATGGCCGTAGCACTCT 59.482 57.895 0.00 0.00 42.56 3.24
3677 3773 3.238441 CGTAGCACTCTGTTGTCTCTTC 58.762 50.000 0.00 0.00 0.00 2.87
3693 3789 1.557443 CTTCCTTGTCACCGTGTCGC 61.557 60.000 0.00 0.00 0.00 5.19
3748 3844 1.946768 TCAAGTCCAAAAGCAAGTCGG 59.053 47.619 0.00 0.00 0.00 4.79
3814 3911 0.948623 TTCCAGTGCGACAACCATCG 60.949 55.000 0.00 0.00 45.09 3.84
3821 3918 2.390599 CGACAACCATCGCCACTGG 61.391 63.158 0.00 0.00 39.80 4.00
3822 3919 2.672996 ACAACCATCGCCACTGGC 60.673 61.111 10.35 10.35 46.75 4.85
3840 3937 4.415332 CACGCCAGCCTACGACGT 62.415 66.667 5.52 5.52 37.47 4.34
3841 3938 4.112341 ACGCCAGCCTACGACGTC 62.112 66.667 2.43 5.18 29.64 4.34
3844 3941 3.812019 CCAGCCTACGACGTCGCT 61.812 66.667 35.92 22.43 44.43 4.93
3845 3942 2.466982 CCAGCCTACGACGTCGCTA 61.467 63.158 35.92 24.29 44.43 4.26
3846 3943 1.647629 CAGCCTACGACGTCGCTAT 59.352 57.895 35.92 20.43 44.43 2.97
3847 3944 0.029035 CAGCCTACGACGTCGCTATT 59.971 55.000 35.92 20.06 44.43 1.73
3848 3945 0.029035 AGCCTACGACGTCGCTATTG 59.971 55.000 35.92 20.79 44.43 1.90
3849 3946 0.933509 GCCTACGACGTCGCTATTGG 60.934 60.000 35.92 27.67 44.43 3.16
3850 3947 0.317603 CCTACGACGTCGCTATTGGG 60.318 60.000 35.92 23.66 44.43 4.12
3851 3948 0.317603 CTACGACGTCGCTATTGGGG 60.318 60.000 35.92 13.85 44.43 4.96
3852 3949 0.747644 TACGACGTCGCTATTGGGGA 60.748 55.000 35.92 8.70 44.43 4.81
3853 3950 1.140161 CGACGTCGCTATTGGGGAA 59.860 57.895 26.59 0.00 38.62 3.97
3854 3951 1.143969 CGACGTCGCTATTGGGGAAC 61.144 60.000 26.59 0.00 38.62 3.62
3855 3952 1.143969 GACGTCGCTATTGGGGAACG 61.144 60.000 0.00 4.51 38.62 3.95
3856 3953 1.153706 CGTCGCTATTGGGGAACGT 60.154 57.895 0.00 0.00 38.62 3.99
3857 3954 0.101040 CGTCGCTATTGGGGAACGTA 59.899 55.000 0.00 0.00 38.62 3.57
3858 3955 1.849097 GTCGCTATTGGGGAACGTAG 58.151 55.000 0.00 0.00 38.62 3.51
3860 3957 2.358898 GTCGCTATTGGGGAACGTAGTA 59.641 50.000 0.00 0.00 45.00 1.82
3861 3958 3.023119 TCGCTATTGGGGAACGTAGTAA 58.977 45.455 0.00 0.00 45.00 2.24
3862 3959 3.638160 TCGCTATTGGGGAACGTAGTAAT 59.362 43.478 0.00 0.00 45.00 1.89
3863 3960 4.099881 TCGCTATTGGGGAACGTAGTAATT 59.900 41.667 0.00 0.00 45.00 1.40
3864 3961 4.812626 CGCTATTGGGGAACGTAGTAATTT 59.187 41.667 0.00 0.00 45.00 1.82
3865 3962 5.050567 CGCTATTGGGGAACGTAGTAATTTC 60.051 44.000 0.00 0.00 45.00 2.17
3866 3963 5.818857 GCTATTGGGGAACGTAGTAATTTCA 59.181 40.000 0.00 0.00 45.00 2.69
3867 3964 6.316890 GCTATTGGGGAACGTAGTAATTTCAA 59.683 38.462 0.00 0.00 45.00 2.69
3868 3965 7.148205 GCTATTGGGGAACGTAGTAATTTCAAA 60.148 37.037 0.00 0.00 45.00 2.69
3869 3966 6.956202 TTGGGGAACGTAGTAATTTCAAAA 57.044 33.333 0.00 0.00 45.00 2.44
3870 3967 6.956202 TGGGGAACGTAGTAATTTCAAAAA 57.044 33.333 0.00 0.00 45.00 1.94
3887 3984 2.325509 AAAAATTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
3888 3985 1.231221 AAAATTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
3889 3986 1.231221 AAATTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
3890 3987 0.796312 AATTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
3891 3988 0.037697 ATTCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
3892 3989 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
3893 3990 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
3894 3991 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
3895 3992 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
3896 3993 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
3897 3994 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
3898 3995 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
3899 3996 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
3900 3997 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
3901 3998 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
3902 3999 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
3903 4000 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
3904 4001 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
3905 4002 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
3906 4003 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
3907 4004 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
3908 4005 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
3909 4006 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
3910 4007 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
3911 4008 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
3912 4009 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
3913 4010 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
3914 4011 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
3915 4012 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
3916 4013 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
3917 4014 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
3918 4015 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
3919 4016 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
3920 4017 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
3921 4018 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
3922 4019 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
3923 4020 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
3924 4021 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
3925 4022 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
3926 4023 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
3927 4024 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
3928 4025 0.178958 AACGAGAGGGGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
3929 4026 0.609681 ACGAGAGGGGAGAGTGTGTC 60.610 60.000 0.00 0.00 0.00 3.67
3930 4027 1.316706 CGAGAGGGGAGAGTGTGTCC 61.317 65.000 0.00 0.00 0.00 4.02
3931 4028 0.251832 GAGAGGGGAGAGTGTGTCCA 60.252 60.000 0.00 0.00 35.57 4.02
3932 4029 0.543174 AGAGGGGAGAGTGTGTCCAC 60.543 60.000 0.00 0.00 42.17 4.02
3933 4030 1.878656 GAGGGGAGAGTGTGTCCACG 61.879 65.000 0.00 0.00 46.56 4.94
3934 4031 2.207924 GGGGAGAGTGTGTCCACGT 61.208 63.158 0.00 0.00 46.56 4.49
3935 4032 0.896940 GGGGAGAGTGTGTCCACGTA 60.897 60.000 0.00 0.00 46.56 3.57
3936 4033 0.243095 GGGAGAGTGTGTCCACGTAC 59.757 60.000 0.00 0.00 46.56 3.67
3937 4034 0.243095 GGAGAGTGTGTCCACGTACC 59.757 60.000 0.00 0.00 46.56 3.34
3938 4035 0.243095 GAGAGTGTGTCCACGTACCC 59.757 60.000 0.00 0.00 46.56 3.69
3939 4036 0.178970 AGAGTGTGTCCACGTACCCT 60.179 55.000 0.00 0.00 46.56 4.34
3940 4037 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
3941 4038 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
3942 4039 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
3943 4040 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
3944 4041 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
3945 4042 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
3946 4043 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
3947 4044 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
3948 4045 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
3949 4046 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
3950 4047 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
3951 4048 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
3952 4049 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
3953 4050 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
3954 4051 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
3978 4075 1.823260 CGTTAGCACAACGCGGTTGA 61.823 55.000 22.26 3.38 45.28 3.18
3979 4076 0.515564 GTTAGCACAACGCGGTTGAT 59.484 50.000 22.26 13.46 45.28 2.57
3980 4077 0.515127 TTAGCACAACGCGGTTGATG 59.485 50.000 22.26 17.39 45.28 3.07
3981 4078 0.601576 TAGCACAACGCGGTTGATGT 60.602 50.000 22.26 11.72 45.28 3.06
3982 4079 0.601576 AGCACAACGCGGTTGATGTA 60.602 50.000 22.26 0.00 45.28 2.29
3983 4080 0.179225 GCACAACGCGGTTGATGTAG 60.179 55.000 22.26 1.41 45.28 2.74
3984 4081 1.144969 CACAACGCGGTTGATGTAGT 58.855 50.000 22.26 2.04 45.28 2.73
3985 4082 1.126113 CACAACGCGGTTGATGTAGTC 59.874 52.381 22.26 0.00 45.28 2.59
3986 4083 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
3987 4084 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
3988 4085 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
3989 4086 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
3990 4087 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
3991 4088 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
3992 4089 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
3993 4090 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
3994 4091 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
3995 4092 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
3996 4093 4.378770 GGTTGATGTAGTCGTACGTCTTCA 60.379 45.833 19.61 19.79 43.23 3.02
3997 4094 4.332186 TGATGTAGTCGTACGTCTTCAC 57.668 45.455 19.61 13.19 43.23 3.18
4007 4104 4.379221 GTCTTCACGATCCGACCG 57.621 61.111 0.00 0.00 0.00 4.79
4008 4105 1.798735 GTCTTCACGATCCGACCGA 59.201 57.895 0.00 0.00 0.00 4.69
4009 4106 0.381089 GTCTTCACGATCCGACCGAT 59.619 55.000 0.00 0.00 0.00 4.18
4010 4107 0.661552 TCTTCACGATCCGACCGATC 59.338 55.000 0.00 0.00 43.58 3.69
4011 4108 0.317938 CTTCACGATCCGACCGATCC 60.318 60.000 0.00 0.00 44.07 3.36
4012 4109 1.033202 TTCACGATCCGACCGATCCA 61.033 55.000 0.00 0.00 44.07 3.41
4013 4110 1.033202 TCACGATCCGACCGATCCAA 61.033 55.000 0.00 0.00 44.07 3.53
4014 4111 0.595053 CACGATCCGACCGATCCAAG 60.595 60.000 0.00 0.00 44.07 3.61
4015 4112 1.035932 ACGATCCGACCGATCCAAGT 61.036 55.000 0.00 0.00 44.07 3.16
4016 4113 0.949397 CGATCCGACCGATCCAAGTA 59.051 55.000 0.00 0.00 44.07 2.24
4017 4114 1.334779 CGATCCGACCGATCCAAGTAC 60.335 57.143 0.00 0.00 44.07 2.73
4018 4115 1.000496 GATCCGACCGATCCAAGTACC 60.000 57.143 0.00 0.00 41.51 3.34
4019 4116 1.065273 CCGACCGATCCAAGTACCG 59.935 63.158 0.00 0.00 0.00 4.02
4020 4117 1.378882 CCGACCGATCCAAGTACCGA 61.379 60.000 0.00 0.00 0.00 4.69
4021 4118 0.452987 CGACCGATCCAAGTACCGAA 59.547 55.000 0.00 0.00 0.00 4.30
4022 4119 1.796617 CGACCGATCCAAGTACCGAAC 60.797 57.143 0.00 0.00 0.00 3.95
4023 4120 0.171903 ACCGATCCAAGTACCGAACG 59.828 55.000 0.00 0.00 0.00 3.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 40 1.735376 TAGATCGGGAGGCGTTGCTC 61.735 60.000 0.00 0.00 0.00 4.26
42 45 1.178276 GATCATAGATCGGGAGGCGT 58.822 55.000 0.00 0.00 0.00 5.68
43 46 0.099613 CGATCATAGATCGGGAGGCG 59.900 60.000 18.74 0.00 37.84 5.52
45 48 2.162608 GACACGATCATAGATCGGGAGG 59.837 54.545 31.09 19.19 46.95 4.30
50 53 4.327854 TCATCGACACGATCATAGATCG 57.672 45.455 23.24 23.24 45.19 3.69
61 64 1.407618 TCAGGGGTTATCATCGACACG 59.592 52.381 0.00 0.00 0.00 4.49
79 82 0.478072 AACTGCCACCATCAACCTCA 59.522 50.000 0.00 0.00 0.00 3.86
80 83 1.270550 CAAACTGCCACCATCAACCTC 59.729 52.381 0.00 0.00 0.00 3.85
97 100 1.268794 CGCAACGTTTCCCACATCAAA 60.269 47.619 0.00 0.00 0.00 2.69
102 105 2.181521 GGACGCAACGTTTCCCACA 61.182 57.895 0.00 0.00 41.37 4.17
107 110 2.334838 AGTAGATGGACGCAACGTTTC 58.665 47.619 0.00 0.00 41.37 2.78
109 112 2.288579 TGAAGTAGATGGACGCAACGTT 60.289 45.455 0.00 0.00 41.37 3.99
111 114 1.654105 GTGAAGTAGATGGACGCAACG 59.346 52.381 0.00 0.00 0.00 4.10
132 140 2.500392 TGGTCGAAAAGGGGGTATTG 57.500 50.000 0.00 0.00 0.00 1.90
134 142 2.092592 GTGATGGTCGAAAAGGGGGTAT 60.093 50.000 0.00 0.00 0.00 2.73
155 163 2.417719 CTTGACGGGACAAAGGAGAAG 58.582 52.381 0.00 0.00 0.00 2.85
164 172 4.649674 AGATAGATAAAGCTTGACGGGACA 59.350 41.667 0.00 0.00 0.00 4.02
165 173 5.203060 AGATAGATAAAGCTTGACGGGAC 57.797 43.478 0.00 0.00 0.00 4.46
167 175 5.601662 TGAAGATAGATAAAGCTTGACGGG 58.398 41.667 0.00 0.00 0.00 5.28
170 178 9.587772 TGTAACTGAAGATAGATAAAGCTTGAC 57.412 33.333 0.00 0.00 0.00 3.18
183 191 5.483811 TGGCGTGATTTGTAACTGAAGATA 58.516 37.500 0.00 0.00 0.00 1.98
189 197 3.296628 GTGTTGGCGTGATTTGTAACTG 58.703 45.455 0.00 0.00 0.00 3.16
190 198 2.292292 GGTGTTGGCGTGATTTGTAACT 59.708 45.455 0.00 0.00 0.00 2.24
194 202 1.327303 ATGGTGTTGGCGTGATTTGT 58.673 45.000 0.00 0.00 0.00 2.83
203 211 2.038387 ACGGAGAATATGGTGTTGGC 57.962 50.000 0.00 0.00 0.00 4.52
288 297 8.199176 TGTGTCTTTTCGTGAGTTAACATTTA 57.801 30.769 8.61 0.00 0.00 1.40
314 323 9.461312 TTTTAATGTAGCCTCACATAGACATTT 57.539 29.630 3.64 0.00 38.19 2.32
357 366 7.065324 ACGAGACTTTTTGTGTCTATTTGTGAA 59.935 33.333 0.00 0.00 43.88 3.18
364 373 4.957296 ACCACGAGACTTTTTGTGTCTAT 58.043 39.130 0.00 0.00 43.88 1.98
369 378 5.176958 CCTACTAACCACGAGACTTTTTGTG 59.823 44.000 0.00 0.00 33.14 3.33
371 380 4.689345 CCCTACTAACCACGAGACTTTTTG 59.311 45.833 0.00 0.00 0.00 2.44
373 382 4.154942 TCCCTACTAACCACGAGACTTTT 58.845 43.478 0.00 0.00 0.00 2.27
396 405 9.627123 CAAATTATAGTCCAACCTCCATTCTAA 57.373 33.333 0.00 0.00 0.00 2.10
403 412 6.576185 TCGTACAAATTATAGTCCAACCTCC 58.424 40.000 0.00 0.00 0.00 4.30
497 506 3.493503 AGTTAAGACGCAAAGGAAGTTCG 59.506 43.478 0.00 0.00 0.00 3.95
505 514 3.050619 AGTGACGAGTTAAGACGCAAAG 58.949 45.455 0.00 0.00 0.00 2.77
529 538 0.971959 TAGGTAACCACACCGCCGAT 60.972 55.000 0.00 0.00 43.84 4.18
532 541 0.538118 TCATAGGTAACCACACCGCC 59.462 55.000 0.00 0.00 43.84 6.13
534 543 2.359848 TCGATCATAGGTAACCACACCG 59.640 50.000 0.00 0.00 43.84 4.94
535 544 3.799232 GCTCGATCATAGGTAACCACACC 60.799 52.174 0.00 0.00 39.02 4.16
545 554 2.292016 ACAGACTTCGCTCGATCATAGG 59.708 50.000 0.00 0.00 0.00 2.57
557 566 7.646130 TGCCTTAAATGTTTAAAACAGACTTCG 59.354 33.333 0.00 0.00 45.95 3.79
560 569 7.704899 GTGTGCCTTAAATGTTTAAAACAGACT 59.295 33.333 13.95 0.00 45.95 3.24
580 589 0.389426 ATTCCTACGTGACGTGTGCC 60.389 55.000 22.16 0.00 41.39 5.01
581 590 0.989890 GATTCCTACGTGACGTGTGC 59.010 55.000 22.16 0.32 41.39 4.57
585 594 0.449388 GGTCGATTCCTACGTGACGT 59.551 55.000 17.03 17.03 44.35 4.34
586 595 0.248377 GGGTCGATTCCTACGTGACG 60.248 60.000 2.24 2.24 0.00 4.35
588 597 0.033796 AGGGGTCGATTCCTACGTGA 60.034 55.000 7.62 0.00 0.00 4.35
590 599 2.027385 GTTAGGGGTCGATTCCTACGT 58.973 52.381 13.97 0.00 35.56 3.57
596 605 3.385111 ACTGAGATGTTAGGGGTCGATTC 59.615 47.826 0.00 0.00 0.00 2.52
617 626 9.391006 TGAGTACAACATATTGATTTTAGGGAC 57.609 33.333 0.00 0.00 39.30 4.46
653 662 4.708177 CTCGTTGAGGGGTTGATAATGAT 58.292 43.478 0.00 0.00 0.00 2.45
659 668 1.299976 GGCTCGTTGAGGGGTTGAT 59.700 57.895 0.00 0.00 0.00 2.57
661 670 2.162338 TACGGCTCGTTGAGGGGTTG 62.162 60.000 5.57 0.00 41.54 3.77
662 671 1.909781 TACGGCTCGTTGAGGGGTT 60.910 57.895 5.57 0.00 41.54 4.11
664 673 2.183555 GTACGGCTCGTTGAGGGG 59.816 66.667 5.57 0.00 41.54 4.79
668 677 2.917701 TTATTCGTACGGCTCGTTGA 57.082 45.000 16.52 2.70 41.54 3.18
669 678 3.241868 CCTTTTATTCGTACGGCTCGTTG 60.242 47.826 16.52 1.86 41.54 4.10
670 679 2.925563 CCTTTTATTCGTACGGCTCGTT 59.074 45.455 16.52 0.00 41.54 3.85
686 705 8.172484 GCGAGTGAAATTTGTTTTAAACCTTTT 58.828 29.630 5.32 2.99 0.00 2.27
703 722 5.134202 TCAAGAGACAATAGCGAGTGAAA 57.866 39.130 0.07 0.00 0.00 2.69
716 735 6.197903 TCTATCCTGAATTCCTCAAGAGACA 58.802 40.000 2.27 0.00 32.17 3.41
723 742 4.281941 CGACCATCTATCCTGAATTCCTCA 59.718 45.833 2.27 0.00 0.00 3.86
743 762 2.159572 GCCACACATACAATGGTTCGAC 60.160 50.000 0.00 0.00 35.79 4.20
744 763 2.080693 GCCACACATACAATGGTTCGA 58.919 47.619 0.00 0.00 35.79 3.71
745 764 2.083774 AGCCACACATACAATGGTTCG 58.916 47.619 0.00 0.00 35.79 3.95
746 765 3.377172 GGTAGCCACACATACAATGGTTC 59.623 47.826 0.00 0.00 35.79 3.62
747 766 3.010138 AGGTAGCCACACATACAATGGTT 59.990 43.478 0.00 0.00 35.79 3.67
748 767 2.576191 AGGTAGCCACACATACAATGGT 59.424 45.455 0.00 0.00 35.79 3.55
749 768 2.945008 CAGGTAGCCACACATACAATGG 59.055 50.000 0.00 0.00 36.51 3.16
750 769 2.355756 GCAGGTAGCCACACATACAATG 59.644 50.000 0.00 0.00 37.23 2.82
773 792 2.030540 TCGTTGTCCTACTTCCGTCAAG 60.031 50.000 0.00 0.00 38.21 3.02
781 800 0.038526 CCAGCGTCGTTGTCCTACTT 60.039 55.000 8.32 0.00 0.00 2.24
796 815 4.578105 CCTTCTTCATACTCCAAATCCAGC 59.422 45.833 0.00 0.00 0.00 4.85
833 852 2.030363 TCACACGTTTTGATTGATGGCC 60.030 45.455 0.00 0.00 0.00 5.36
961 985 6.635030 ATTTCCAAGTTCGCCTTTATATCC 57.365 37.500 0.00 0.00 0.00 2.59
1016 1040 1.152830 GGGAGGTCAGGTTTTGGCA 59.847 57.895 0.00 0.00 31.20 4.92
1057 1083 2.564975 CGTACGCCTTGACTCCGT 59.435 61.111 0.52 0.00 38.84 4.69
1510 1540 3.012518 AGTTGGAAATCTTCATGGCGAG 58.987 45.455 0.00 0.00 0.00 5.03
1524 1554 1.270412 ACGATGTTGGCGTAGTTGGAA 60.270 47.619 0.00 0.00 40.65 3.53
1608 1642 3.710677 AGGAATCAGAATCAGAGGTCAGG 59.289 47.826 0.00 0.00 0.00 3.86
1629 1668 1.091771 CATACACCTGCAGCCCGAAG 61.092 60.000 8.66 0.00 0.00 3.79
1866 1905 1.415659 AGCAAGAACTGTGAGTCTGCT 59.584 47.619 0.00 0.00 0.00 4.24
1867 1906 1.876322 AGCAAGAACTGTGAGTCTGC 58.124 50.000 0.00 0.00 0.00 4.26
1890 1935 1.135774 TCGATTTGTGACCGACGAGAG 60.136 52.381 0.00 0.00 0.00 3.20
1894 1939 1.124297 CACTTCGATTTGTGACCGACG 59.876 52.381 7.64 0.00 36.38 5.12
1917 1962 1.084370 GCACGAATTGAGGGACGGAG 61.084 60.000 0.00 0.00 0.00 4.63
2088 2133 2.885644 CGGACGATGCTGTTCCCG 60.886 66.667 0.00 0.00 0.00 5.14
2175 2220 4.761739 TCCGCATCACTTTTCTCAAGAATT 59.238 37.500 0.00 0.00 33.54 2.17
2393 2438 2.481952 AGAGCAGCACTGACGAAAAATC 59.518 45.455 0.81 0.00 0.00 2.17
2428 2482 4.630644 AGAATTCAGAGCTCCAGTTGAA 57.369 40.909 15.92 15.92 34.42 2.69
2430 2484 4.943142 GAAGAATTCAGAGCTCCAGTTG 57.057 45.455 10.93 1.73 46.62 3.16
2613 2669 1.397343 GATGCATGCTCTGTGACTGTG 59.603 52.381 20.33 0.00 0.00 3.66
2614 2670 1.735386 GATGCATGCTCTGTGACTGT 58.265 50.000 20.33 0.00 0.00 3.55
2615 2671 0.651031 CGATGCATGCTCTGTGACTG 59.349 55.000 20.33 0.00 0.00 3.51
2616 2672 0.461516 CCGATGCATGCTCTGTGACT 60.462 55.000 20.33 0.00 0.00 3.41
2617 2673 0.460811 TCCGATGCATGCTCTGTGAC 60.461 55.000 20.33 1.75 0.00 3.67
2618 2674 0.249955 TTCCGATGCATGCTCTGTGA 59.750 50.000 20.33 6.34 0.00 3.58
2634 2690 4.821805 TGAACTGACCTCAAGTGAATTTCC 59.178 41.667 0.00 0.00 0.00 3.13
2684 2741 2.662596 GATGTCGACCTGGTGCCA 59.337 61.111 14.12 0.00 0.00 4.92
2688 2745 2.214181 GAGCACGATGTCGACCTGGT 62.214 60.000 14.12 7.96 43.02 4.00
2703 2760 2.895680 GCATGTCCTCCGAGAGCA 59.104 61.111 0.00 0.00 0.00 4.26
2817 2874 2.203209 GCTCCGGCTTATGGGTGG 60.203 66.667 0.00 0.00 35.22 4.61
2887 2944 1.505477 GATCTGGCGAATGCTGGAGC 61.505 60.000 0.00 0.00 42.25 4.70
2898 2955 0.179137 TCGCTGTACAAGATCTGGCG 60.179 55.000 14.96 14.96 42.00 5.69
2926 2983 0.888285 AGAACACTGCAGCTTCAGGC 60.888 55.000 17.84 2.29 38.36 4.85
2936 2993 5.402398 AGAGAAAAACAACAAGAACACTGC 58.598 37.500 0.00 0.00 0.00 4.40
2997 3054 3.717576 TCCACAGAGACATCCATCTTCT 58.282 45.455 0.00 0.00 0.00 2.85
3008 3065 6.642950 CGAATCCTGTATTATTCCACAGAGAC 59.357 42.308 3.37 0.00 43.99 3.36
3013 3070 4.141597 TGGCGAATCCTGTATTATTCCACA 60.142 41.667 0.00 0.00 35.26 4.17
3080 3144 7.568861 GCAAAGCAAGAAAACAGAATCATTCAG 60.569 37.037 0.00 0.00 0.00 3.02
3123 3191 2.293170 TGGCGTCAACAAATCAAGACA 58.707 42.857 0.00 0.00 0.00 3.41
3134 3202 2.329379 TGTTGTGTTTTTGGCGTCAAC 58.671 42.857 0.00 0.00 36.66 3.18
3145 3214 4.280677 CCATATGACCCTGTTGTTGTGTTT 59.719 41.667 3.65 0.00 0.00 2.83
3156 3238 4.923516 ATCCATCTTCCATATGACCCTG 57.076 45.455 3.65 0.00 0.00 4.45
3158 3240 6.385176 TGAGATATCCATCTTCCATATGACCC 59.615 42.308 3.65 0.00 41.78 4.46
3195 3277 3.774216 TCCCCTAAAAATGGCAAATCCTG 59.226 43.478 0.00 0.00 35.26 3.86
3272 3354 1.079888 GCGTTTTTGCCCCCTCATG 60.080 57.895 0.00 0.00 0.00 3.07
3274 3356 2.197324 AGCGTTTTTGCCCCCTCA 59.803 55.556 0.00 0.00 34.65 3.86
3295 3377 5.492895 CAGCTATCCTATTCTCGGAGTAGA 58.507 45.833 4.69 0.00 33.29 2.59
3296 3378 4.095782 GCAGCTATCCTATTCTCGGAGTAG 59.904 50.000 4.69 0.54 33.29 2.57
3297 3379 4.011023 GCAGCTATCCTATTCTCGGAGTA 58.989 47.826 4.69 0.00 33.29 2.59
3298 3380 2.823154 GCAGCTATCCTATTCTCGGAGT 59.177 50.000 4.69 0.00 33.29 3.85
3299 3381 2.822561 TGCAGCTATCCTATTCTCGGAG 59.177 50.000 0.00 0.00 33.29 4.63
3300 3382 2.876581 TGCAGCTATCCTATTCTCGGA 58.123 47.619 0.00 0.00 34.52 4.55
3301 3383 3.667497 TTGCAGCTATCCTATTCTCGG 57.333 47.619 0.00 0.00 0.00 4.63
3302 3384 7.093354 TCTAATTTGCAGCTATCCTATTCTCG 58.907 38.462 0.00 0.00 0.00 4.04
3303 3385 7.064490 GCTCTAATTTGCAGCTATCCTATTCTC 59.936 40.741 0.00 0.00 0.00 2.87
3304 3386 6.878389 GCTCTAATTTGCAGCTATCCTATTCT 59.122 38.462 0.00 0.00 0.00 2.40
3305 3387 6.652481 TGCTCTAATTTGCAGCTATCCTATTC 59.348 38.462 0.00 0.00 34.84 1.75
3306 3388 6.429385 GTGCTCTAATTTGCAGCTATCCTATT 59.571 38.462 0.00 0.00 40.06 1.73
3307 3389 5.936956 GTGCTCTAATTTGCAGCTATCCTAT 59.063 40.000 0.00 0.00 40.06 2.57
3308 3390 5.300752 GTGCTCTAATTTGCAGCTATCCTA 58.699 41.667 0.00 0.00 40.06 2.94
3309 3391 4.133078 GTGCTCTAATTTGCAGCTATCCT 58.867 43.478 0.00 0.00 40.06 3.24
3310 3392 4.480386 GTGCTCTAATTTGCAGCTATCC 57.520 45.455 0.00 0.00 40.06 2.59
3316 3398 3.829948 CACTTGGTGCTCTAATTTGCAG 58.170 45.455 1.57 0.00 40.06 4.41
3317 3399 3.921119 CACTTGGTGCTCTAATTTGCA 57.079 42.857 0.00 0.00 36.79 4.08
3364 3446 1.087202 ACGACTGCTGTTTTGCGACA 61.087 50.000 9.06 0.00 35.36 4.35
3367 3449 2.005537 GCACGACTGCTGTTTTGCG 61.006 57.895 12.58 7.61 40.63 4.85
3368 3450 2.005537 CGCACGACTGCTGTTTTGC 61.006 57.895 16.05 16.05 41.77 3.68
3400 3486 2.171003 GGAAGGGGAAGGTTTCATGTG 58.829 52.381 0.00 0.00 0.00 3.21
3401 3487 1.077169 GGGAAGGGGAAGGTTTCATGT 59.923 52.381 0.00 0.00 0.00 3.21
3406 3492 0.710588 GGATGGGAAGGGGAAGGTTT 59.289 55.000 0.00 0.00 0.00 3.27
3416 3502 2.040544 GTGGTGCACGGATGGGAAG 61.041 63.158 11.45 0.00 0.00 3.46
3417 3503 2.033448 GTGGTGCACGGATGGGAA 59.967 61.111 11.45 0.00 0.00 3.97
3418 3504 4.028490 GGTGGTGCACGGATGGGA 62.028 66.667 11.45 0.00 34.83 4.37
3419 3505 3.976701 GAGGTGGTGCACGGATGGG 62.977 68.421 11.45 0.00 34.83 4.00
3420 3506 2.436646 GAGGTGGTGCACGGATGG 60.437 66.667 11.45 0.00 34.83 3.51
3421 3507 2.436646 GGAGGTGGTGCACGGATG 60.437 66.667 11.45 0.00 34.83 3.51
3422 3508 4.082523 CGGAGGTGGTGCACGGAT 62.083 66.667 11.45 0.00 34.83 4.18
3465 3551 0.103208 CGACAGTGCTGGGTAGATCC 59.897 60.000 4.11 0.00 34.19 3.36
3466 3552 0.528684 GCGACAGTGCTGGGTAGATC 60.529 60.000 4.11 0.00 34.19 2.75
3469 3555 2.125512 GGCGACAGTGCTGGGTAG 60.126 66.667 4.11 0.00 34.52 3.18
3492 3578 3.083600 GATTGAGTCGTTGCGGCGG 62.084 63.158 9.78 0.00 36.23 6.13
3494 3580 2.395690 CGATTGAGTCGTTGCGGC 59.604 61.111 0.00 0.00 45.19 6.53
3569 3655 0.949105 GTTGTGACGGCCGAATCAGT 60.949 55.000 35.90 8.10 0.00 3.41
3571 3657 0.669318 GAGTTGTGACGGCCGAATCA 60.669 55.000 35.90 23.90 0.00 2.57
3584 3672 1.073923 GATGGGGGACTTGTGAGTTGT 59.926 52.381 0.00 0.00 35.88 3.32
3588 3676 1.609783 GGGATGGGGGACTTGTGAG 59.390 63.158 0.00 0.00 0.00 3.51
3591 3679 2.124085 TCGGGATGGGGGACTTGT 59.876 61.111 0.00 0.00 0.00 3.16
3592 3680 2.590092 GTCGGGATGGGGGACTTG 59.410 66.667 0.00 0.00 0.00 3.16
3593 3681 3.081409 CGTCGGGATGGGGGACTT 61.081 66.667 0.00 0.00 0.00 3.01
3615 3703 3.823330 GGACGACGCGGAGGTGAT 61.823 66.667 12.47 0.00 0.00 3.06
3632 3720 2.027625 GTCGTTTGAGGTCTGCGGG 61.028 63.158 0.00 0.00 0.00 6.13
3633 3721 0.670546 ATGTCGTTTGAGGTCTGCGG 60.671 55.000 0.00 0.00 0.00 5.69
3636 3724 0.798776 GCCATGTCGTTTGAGGTCTG 59.201 55.000 0.00 0.00 0.00 3.51
3639 3727 1.671054 CGGCCATGTCGTTTGAGGT 60.671 57.895 2.24 0.00 0.00 3.85
3641 3729 0.999406 CTACGGCCATGTCGTTTGAG 59.001 55.000 14.84 5.11 42.79 3.02
3642 3730 1.017177 GCTACGGCCATGTCGTTTGA 61.017 55.000 14.84 0.00 42.79 2.69
3643 3731 1.295357 TGCTACGGCCATGTCGTTTG 61.295 55.000 14.84 10.32 42.79 2.93
3644 3732 1.004320 TGCTACGGCCATGTCGTTT 60.004 52.632 14.84 0.00 42.79 3.60
3645 3733 1.740296 GTGCTACGGCCATGTCGTT 60.740 57.895 14.84 2.61 42.79 3.85
3647 3735 1.878522 GAGTGCTACGGCCATGTCG 60.879 63.158 2.24 4.47 37.74 4.35
3648 3736 0.807667 CAGAGTGCTACGGCCATGTC 60.808 60.000 2.24 0.00 37.74 3.06
3649 3737 1.219124 CAGAGTGCTACGGCCATGT 59.781 57.895 2.24 0.00 37.74 3.21
3650 3738 0.391661 AACAGAGTGCTACGGCCATG 60.392 55.000 2.24 0.00 37.74 3.66
3651 3739 0.391661 CAACAGAGTGCTACGGCCAT 60.392 55.000 2.24 0.00 37.74 4.40
3652 3740 1.005037 CAACAGAGTGCTACGGCCA 60.005 57.895 2.24 0.00 37.74 5.36
3653 3741 1.004918 ACAACAGAGTGCTACGGCC 60.005 57.895 0.00 0.00 37.74 6.13
3654 3742 0.038159 AGACAACAGAGTGCTACGGC 60.038 55.000 0.00 0.00 39.26 5.68
3656 3744 2.999507 AGAGACAACAGAGTGCTACG 57.000 50.000 0.00 0.00 0.00 3.51
3657 3745 3.257127 AGGAAGAGACAACAGAGTGCTAC 59.743 47.826 0.00 0.00 0.00 3.58
3658 3746 3.501349 AGGAAGAGACAACAGAGTGCTA 58.499 45.455 0.00 0.00 0.00 3.49
3666 3762 2.483013 CGGTGACAAGGAAGAGACAACA 60.483 50.000 0.00 0.00 0.00 3.33
3677 3773 3.041940 GGCGACACGGTGACAAGG 61.042 66.667 16.29 0.00 0.00 3.61
3709 3805 2.954868 CTACGACGGCATGACGGC 60.955 66.667 27.41 23.88 40.09 5.68
3710 3806 2.954868 GCTACGACGGCATGACGG 60.955 66.667 27.41 11.14 40.09 4.79
3711 3807 1.939785 GAGCTACGACGGCATGACG 60.940 63.158 21.98 21.98 41.56 4.35
3712 3808 0.457853 TTGAGCTACGACGGCATGAC 60.458 55.000 0.00 0.00 0.00 3.06
3713 3809 0.179137 CTTGAGCTACGACGGCATGA 60.179 55.000 0.00 0.00 0.00 3.07
3714 3810 0.458543 ACTTGAGCTACGACGGCATG 60.459 55.000 0.00 0.00 0.00 4.06
3715 3811 0.179134 GACTTGAGCTACGACGGCAT 60.179 55.000 0.00 0.00 0.00 4.40
3716 3812 1.211969 GACTTGAGCTACGACGGCA 59.788 57.895 0.00 0.00 0.00 5.69
3717 3813 1.516603 GGACTTGAGCTACGACGGC 60.517 63.158 0.00 0.00 0.00 5.68
3718 3814 0.242825 TTGGACTTGAGCTACGACGG 59.757 55.000 0.00 0.00 0.00 4.79
3719 3815 2.060326 TTTGGACTTGAGCTACGACG 57.940 50.000 0.00 0.00 0.00 5.12
3720 3816 2.157863 GCTTTTGGACTTGAGCTACGAC 59.842 50.000 0.00 0.00 32.54 4.34
3721 3817 2.224185 TGCTTTTGGACTTGAGCTACGA 60.224 45.455 0.00 0.00 36.16 3.43
3722 3818 2.143122 TGCTTTTGGACTTGAGCTACG 58.857 47.619 0.00 0.00 36.16 3.51
3723 3819 3.565902 ACTTGCTTTTGGACTTGAGCTAC 59.434 43.478 0.00 0.00 36.16 3.58
3724 3820 3.815401 GACTTGCTTTTGGACTTGAGCTA 59.185 43.478 0.00 0.00 36.16 3.32
3762 3858 4.849329 GTCGGAGCCCTGCGTACG 62.849 72.222 11.84 11.84 44.84 3.67
3763 3859 4.509737 GGTCGGAGCCCTGCGTAC 62.510 72.222 8.97 6.25 44.84 3.67
3767 3863 3.553095 AAAGTGGTCGGAGCCCTGC 62.553 63.158 4.54 0.00 0.00 4.85
3768 3864 1.672356 CAAAGTGGTCGGAGCCCTG 60.672 63.158 4.54 0.00 0.00 4.45
3769 3865 2.750350 CAAAGTGGTCGGAGCCCT 59.250 61.111 4.54 0.00 0.00 5.19
3791 3888 1.228657 GGTTGTCGCACTGGAACTCC 61.229 60.000 0.00 0.00 0.00 3.85
3794 3891 0.517316 GATGGTTGTCGCACTGGAAC 59.483 55.000 0.00 0.00 0.00 3.62
3823 3920 4.415332 ACGTCGTAGGCTGGCGTG 62.415 66.667 3.53 5.51 34.36 5.34
3824 3921 4.112341 GACGTCGTAGGCTGGCGT 62.112 66.667 4.02 4.02 38.55 5.68
3827 3924 1.783031 ATAGCGACGTCGTAGGCTGG 61.783 60.000 35.48 9.06 42.22 4.85
3828 3925 0.029035 AATAGCGACGTCGTAGGCTG 59.971 55.000 35.48 9.81 42.22 4.85
3829 3926 0.029035 CAATAGCGACGTCGTAGGCT 59.971 55.000 35.48 26.12 42.22 4.58
3830 3927 0.933509 CCAATAGCGACGTCGTAGGC 60.934 60.000 35.48 20.84 42.22 3.93
3831 3928 0.317603 CCCAATAGCGACGTCGTAGG 60.318 60.000 35.48 27.05 42.22 3.18
3832 3929 0.317603 CCCCAATAGCGACGTCGTAG 60.318 60.000 35.48 21.01 42.22 3.51
3833 3930 0.747644 TCCCCAATAGCGACGTCGTA 60.748 55.000 35.48 25.82 42.22 3.43
3834 3931 1.597797 TTCCCCAATAGCGACGTCGT 61.598 55.000 35.48 24.66 42.22 4.34
3835 3932 1.140161 TTCCCCAATAGCGACGTCG 59.860 57.895 32.57 32.57 43.27 5.12
3836 3933 1.143969 CGTTCCCCAATAGCGACGTC 61.144 60.000 5.18 5.18 0.00 4.34
3837 3934 1.153706 CGTTCCCCAATAGCGACGT 60.154 57.895 0.00 0.00 0.00 4.34
3838 3935 0.101040 TACGTTCCCCAATAGCGACG 59.899 55.000 0.00 0.00 36.65 5.12
3839 3936 1.135721 ACTACGTTCCCCAATAGCGAC 59.864 52.381 0.00 0.00 0.00 5.19
3840 3937 1.477553 ACTACGTTCCCCAATAGCGA 58.522 50.000 0.00 0.00 0.00 4.93
3841 3938 3.441496 TTACTACGTTCCCCAATAGCG 57.559 47.619 0.00 0.00 0.00 4.26
3842 3939 5.818857 TGAAATTACTACGTTCCCCAATAGC 59.181 40.000 0.00 0.00 0.00 2.97
3843 3940 7.852971 TTGAAATTACTACGTTCCCCAATAG 57.147 36.000 0.00 0.00 0.00 1.73
3844 3941 8.632906 TTTTGAAATTACTACGTTCCCCAATA 57.367 30.769 0.00 0.00 0.00 1.90
3845 3942 7.527568 TTTTGAAATTACTACGTTCCCCAAT 57.472 32.000 0.00 0.00 0.00 3.16
3846 3943 6.956202 TTTTGAAATTACTACGTTCCCCAA 57.044 33.333 0.00 0.00 0.00 4.12
3847 3944 6.956202 TTTTTGAAATTACTACGTTCCCCA 57.044 33.333 0.00 0.00 0.00 4.96
3868 3965 2.325509 GCGTGTGCGTAGGAATTTTT 57.674 45.000 0.00 0.00 40.81 1.94
3880 3977 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
3881 3978 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
3882 3979 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
3883 3980 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
3884 3981 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
3885 3982 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
3886 3983 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
3887 3984 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
3888 3985 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
3889 3986 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
3890 3987 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
3891 3988 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
3892 3989 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
3893 3990 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
3894 3991 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
3895 3992 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
3896 3993 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
3897 3994 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
3898 3995 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
3899 3996 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
3900 3997 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
3901 3998 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
3902 3999 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
3903 4000 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
3904 4001 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
3905 4002 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
3906 4003 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
3907 4004 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
3908 4005 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
3909 4006 0.178958 ACACACTCTCCCCTCTCGTT 60.179 55.000 0.00 0.00 0.00 3.85
3910 4007 0.609681 GACACACTCTCCCCTCTCGT 60.610 60.000 0.00 0.00 0.00 4.18
3911 4008 1.316706 GGACACACTCTCCCCTCTCG 61.317 65.000 0.00 0.00 0.00 4.04
3912 4009 0.251832 TGGACACACTCTCCCCTCTC 60.252 60.000 0.00 0.00 0.00 3.20
3913 4010 0.543174 GTGGACACACTCTCCCCTCT 60.543 60.000 0.00 0.00 44.29 3.69
3914 4011 1.878656 CGTGGACACACTCTCCCCTC 61.879 65.000 3.12 0.00 45.50 4.30
3915 4012 1.908793 CGTGGACACACTCTCCCCT 60.909 63.158 3.12 0.00 45.50 4.79
3916 4013 0.896940 TACGTGGACACACTCTCCCC 60.897 60.000 0.00 0.00 45.50 4.81
3917 4014 0.243095 GTACGTGGACACACTCTCCC 59.757 60.000 0.00 0.00 45.50 4.30
3918 4015 0.243095 GGTACGTGGACACACTCTCC 59.757 60.000 0.00 0.00 45.50 3.71
3919 4016 0.243095 GGGTACGTGGACACACTCTC 59.757 60.000 0.00 0.00 45.50 3.20
3920 4017 0.178970 AGGGTACGTGGACACACTCT 60.179 55.000 0.00 0.00 45.50 3.24
3921 4018 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
3922 4019 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
3923 4020 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
3924 4021 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
3925 4022 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
3926 4023 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
3927 4024 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
3929 4026 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
3947 4044 1.058903 GCTAACGCTTCCGCTTTCG 59.941 57.895 0.00 0.00 38.22 3.46
3948 4045 0.179222 GTGCTAACGCTTCCGCTTTC 60.179 55.000 0.00 0.00 38.22 2.62
3949 4046 0.882927 TGTGCTAACGCTTCCGCTTT 60.883 50.000 0.00 0.00 38.22 3.51
3950 4047 0.882927 TTGTGCTAACGCTTCCGCTT 60.883 50.000 0.00 0.00 38.22 4.68
3951 4048 1.301401 TTGTGCTAACGCTTCCGCT 60.301 52.632 0.00 0.00 38.22 5.52
3952 4049 1.154469 GTTGTGCTAACGCTTCCGC 60.154 57.895 0.00 0.00 38.22 5.54
3953 4050 1.129809 CGTTGTGCTAACGCTTCCG 59.870 57.895 12.46 0.00 36.82 4.30
3959 4056 1.438059 CAACCGCGTTGTGCTAACG 60.438 57.895 18.25 18.25 45.56 3.18
3960 4057 0.515564 ATCAACCGCGTTGTGCTAAC 59.484 50.000 16.97 0.00 43.23 2.34
3961 4058 0.515127 CATCAACCGCGTTGTGCTAA 59.485 50.000 16.97 2.99 43.23 3.09
3962 4059 0.601576 ACATCAACCGCGTTGTGCTA 60.602 50.000 16.97 3.28 43.23 3.49
3963 4060 0.601576 TACATCAACCGCGTTGTGCT 60.602 50.000 16.97 6.88 43.23 4.40
3964 4061 0.179225 CTACATCAACCGCGTTGTGC 60.179 55.000 16.97 0.00 43.23 4.57
3965 4062 1.126113 GACTACATCAACCGCGTTGTG 59.874 52.381 16.97 15.92 43.23 3.33
3966 4063 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
3967 4064 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
3968 4065 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
3969 4066 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
3970 4067 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
3971 4068 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
3972 4069 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
3973 4070 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
3974 4071 4.552660 GTGAAGACGTACGACTACATCAAC 59.447 45.833 24.41 11.90 0.00 3.18
3975 4072 4.667415 CGTGAAGACGTACGACTACATCAA 60.667 45.833 24.41 4.49 42.54 2.57
3976 4073 3.181527 CGTGAAGACGTACGACTACATCA 60.182 47.826 24.41 18.00 42.54 3.07
3977 4074 3.061295 TCGTGAAGACGTACGACTACATC 59.939 47.826 24.41 15.62 46.20 3.06
3978 4075 2.995939 TCGTGAAGACGTACGACTACAT 59.004 45.455 24.41 6.17 46.20 2.29
3979 4076 2.403259 TCGTGAAGACGTACGACTACA 58.597 47.619 24.41 13.28 46.20 2.74
3985 4082 0.371301 TCGGATCGTGAAGACGTACG 59.629 55.000 15.01 15.01 46.20 3.67
3986 4083 1.530646 GGTCGGATCGTGAAGACGTAC 60.531 57.143 0.00 0.00 46.20 3.67
3987 4084 0.729116 GGTCGGATCGTGAAGACGTA 59.271 55.000 0.00 0.00 46.20 3.57
3988 4085 1.505353 GGTCGGATCGTGAAGACGT 59.495 57.895 0.00 0.00 46.20 4.34
3990 4087 0.381089 ATCGGTCGGATCGTGAAGAC 59.619 55.000 10.85 0.00 0.00 3.01
3991 4088 0.661552 GATCGGTCGGATCGTGAAGA 59.338 55.000 10.85 0.00 42.02 2.87
3992 4089 3.165559 GATCGGTCGGATCGTGAAG 57.834 57.895 10.85 0.00 42.02 3.02
3999 4096 1.038280 GGTACTTGGATCGGTCGGAT 58.962 55.000 0.00 0.00 38.35 4.18
4000 4097 1.378882 CGGTACTTGGATCGGTCGGA 61.379 60.000 0.00 0.00 0.00 4.55
4001 4098 1.065273 CGGTACTTGGATCGGTCGG 59.935 63.158 0.00 0.00 0.00 4.79
4002 4099 0.452987 TTCGGTACTTGGATCGGTCG 59.547 55.000 0.00 0.00 0.00 4.79
4003 4100 1.796617 CGTTCGGTACTTGGATCGGTC 60.797 57.143 0.00 0.00 0.00 4.79
4004 4101 0.171903 CGTTCGGTACTTGGATCGGT 59.828 55.000 0.00 0.00 0.00 4.69
4005 4102 2.953669 CGTTCGGTACTTGGATCGG 58.046 57.895 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.