Multiple sequence alignment - TraesCS6D01G302000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G302000 chr6D 100.000 5484 0 0 1 5484 411493536 411488053 0.000000e+00 10128.0
1 TraesCS6D01G302000 chr6D 89.623 106 9 2 2242 2347 411490439 411490336 3.450000e-27 134.0
2 TraesCS6D01G302000 chr6D 89.623 106 9 2 3098 3201 411491295 411491190 3.450000e-27 134.0
3 TraesCS6D01G302000 chr6A 97.417 3058 51 13 1798 4833 556091893 556088842 0.000000e+00 5184.0
4 TraesCS6D01G302000 chr6A 96.509 1375 20 2 391 1743 556094462 556093094 0.000000e+00 2248.0
5 TraesCS6D01G302000 chr6A 94.764 191 9 1 5152 5342 556086447 556086258 4.150000e-76 296.0
6 TraesCS6D01G302000 chr6A 94.898 98 5 0 4870 4967 556086764 556086667 2.650000e-33 154.0
7 TraesCS6D01G302000 chr6A 92.453 106 4 3 5007 5111 556086661 556086559 1.230000e-31 148.0
8 TraesCS6D01G302000 chr6A 89.623 106 9 2 2242 2347 556090594 556090491 3.450000e-27 134.0
9 TraesCS6D01G302000 chr6A 91.837 98 3 2 1 94 556095408 556095312 1.240000e-26 132.0
10 TraesCS6D01G302000 chr6A 88.679 106 10 2 3098 3201 556091449 556091344 1.600000e-25 128.0
11 TraesCS6D01G302000 chr6A 98.485 66 1 0 1734 1799 556092226 556092161 3.470000e-22 117.0
12 TraesCS6D01G302000 chr6A 90.000 90 0 1 5366 5446 556086198 556086109 2.090000e-19 108.0
13 TraesCS6D01G302000 chr3A 93.020 2550 120 21 1069 3578 33572335 33569804 0.000000e+00 3670.0
14 TraesCS6D01G302000 chr3A 91.471 938 65 11 3575 4510 33569749 33568825 0.000000e+00 1275.0
15 TraesCS6D01G302000 chr3A 96.223 556 18 1 456 1008 33573662 33573107 0.000000e+00 907.0
16 TraesCS6D01G302000 chr3A 86.084 309 22 6 4573 4863 33568823 33568518 4.120000e-81 313.0
17 TraesCS6D01G302000 chr3A 80.247 243 37 9 439 680 33287689 33287921 7.300000e-39 172.0
18 TraesCS6D01G302000 chr3A 95.283 106 4 1 355 460 33578852 33578748 3.400000e-37 167.0
19 TraesCS6D01G302000 chr3A 77.778 270 48 9 420 686 38321373 38321113 7.360000e-34 156.0
20 TraesCS6D01G302000 chr3A 92.453 106 7 1 2242 2347 33570285 33570181 3.420000e-32 150.0
21 TraesCS6D01G302000 chr3A 91.176 102 8 1 3101 3201 33571152 33571051 2.660000e-28 137.0
22 TraesCS6D01G302000 chr3A 93.846 65 4 0 2178 2242 33571054 33570990 1.260000e-16 99.0
23 TraesCS6D01G302000 chr3A 70.709 536 133 19 1059 1579 193602460 193601934 1.260000e-16 99.0
24 TraesCS6D01G302000 chr3A 70.336 536 135 20 1059 1579 33426690 33426164 2.720000e-13 87.9
25 TraesCS6D01G302000 chr3A 100.000 28 0 0 5297 5324 597267263 597267290 1.000000e-02 52.8
26 TraesCS6D01G302000 chr3D 92.813 1948 75 19 341 2242 24095398 24093470 0.000000e+00 2761.0
27 TraesCS6D01G302000 chr3D 93.873 1224 59 7 2363 3578 24093492 24092277 0.000000e+00 1831.0
28 TraesCS6D01G302000 chr3D 91.852 945 52 15 3575 4517 24092225 24091304 0.000000e+00 1295.0
29 TraesCS6D01G302000 chr3D 94.538 238 11 2 93 329 537045415 537045179 3.120000e-97 366.0
30 TraesCS6D01G302000 chr3D 89.691 291 14 5 4574 4863 24091297 24091022 1.880000e-94 357.0
31 TraesCS6D01G302000 chr3D 92.017 238 17 2 93 329 588971321 588971085 3.170000e-87 333.0
32 TraesCS6D01G302000 chr3D 81.778 225 29 8 521 743 29161883 29161669 1.570000e-40 178.0
33 TraesCS6D01G302000 chr3D 91.589 107 8 1 2242 2348 24092760 24092655 4.430000e-31 147.0
34 TraesCS6D01G302000 chr3D 100.000 28 0 0 5297 5324 455011847 455011874 1.000000e-02 52.8
35 TraesCS6D01G302000 chr3B 90.119 921 64 15 3946 4863 41318347 41317451 0.000000e+00 1171.0
36 TraesCS6D01G302000 chr3B 94.752 686 33 3 2835 3518 41328517 41327833 0.000000e+00 1064.0
37 TraesCS6D01G302000 chr3B 92.893 605 41 2 1717 2320 41331863 41331260 0.000000e+00 878.0
38 TraesCS6D01G302000 chr3B 91.455 433 24 4 2363 2791 41329198 41328775 2.850000e-162 582.0
39 TraesCS6D01G302000 chr3B 91.711 374 25 5 3575 3948 41327735 41327368 1.050000e-141 514.0
40 TraesCS6D01G302000 chr3B 89.189 259 25 3 72 329 572228006 572227750 2.460000e-83 320.0
41 TraesCS6D01G302000 chr3B 96.503 143 5 0 1577 1719 41334404 41334262 2.550000e-58 237.0
42 TraesCS6D01G302000 chr3B 92.453 106 7 1 2242 2347 41328254 41328150 3.420000e-32 150.0
43 TraesCS6D01G302000 chr3B 81.395 129 21 1 4371 4496 41191184 41191056 9.720000e-18 102.0
44 TraesCS6D01G302000 chr3B 91.781 73 5 1 3101 3172 41331334 41331262 3.500000e-17 100.0
45 TraesCS6D01G302000 chr3B 93.182 44 3 0 1057 1100 41252022 41252065 1.280000e-06 65.8
46 TraesCS6D01G302000 chr3B 100.000 30 0 0 5295 5324 598111589 598111618 7.670000e-04 56.5
47 TraesCS6D01G302000 chr1B 93.416 243 13 2 89 329 629296520 629296279 1.880000e-94 357.0
48 TraesCS6D01G302000 chr5A 92.562 242 15 3 89 329 693843158 693843397 1.460000e-90 344.0
49 TraesCS6D01G302000 chr7D 92.437 238 16 2 93 329 58401661 58401425 6.800000e-89 339.0
50 TraesCS6D01G302000 chr2D 92.437 238 16 2 93 329 459018324 459018088 6.800000e-89 339.0
51 TraesCS6D01G302000 chr2D 78.221 326 59 11 522 847 26931406 26931719 1.200000e-46 198.0
52 TraesCS6D01G302000 chr7B 92.405 237 17 1 93 329 512995111 512994876 2.450000e-88 337.0
53 TraesCS6D01G302000 chr1D 91.736 242 17 3 89 329 24009176 24008937 3.170000e-87 333.0
54 TraesCS6D01G302000 chr1D 80.169 237 47 0 512 748 453961652 453961888 1.570000e-40 178.0
55 TraesCS6D01G302000 chr2B 81.071 280 47 5 522 801 42176384 42176657 9.250000e-53 219.0
56 TraesCS6D01G302000 chr2A 82.379 227 37 2 522 748 29149314 29149537 1.560000e-45 195.0
57 TraesCS6D01G302000 chr2A 81.938 227 38 2 522 748 29218357 29218134 7.250000e-44 189.0
58 TraesCS6D01G302000 chr6B 85.294 68 10 0 5179 5246 136365827 136365894 2.740000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G302000 chr6D 411488053 411493536 5483 True 3465.333333 10128 93.082000 1 5484 3 chr6D.!!$R1 5483
1 TraesCS6D01G302000 chr6A 556086109 556095408 9299 True 864.900000 5184 93.466500 1 5446 10 chr6A.!!$R1 5445
2 TraesCS6D01G302000 chr3A 33568518 33573662 5144 True 935.857143 3670 92.039000 456 4863 7 chr3A.!!$R5 4407
3 TraesCS6D01G302000 chr3D 24091022 24095398 4376 True 1278.200000 2761 91.963600 341 4863 5 chr3D.!!$R4 4522
4 TraesCS6D01G302000 chr3B 41317451 41318347 896 True 1171.000000 1171 90.119000 3946 4863 1 chr3B.!!$R2 917
5 TraesCS6D01G302000 chr3B 41327368 41334404 7036 True 503.571429 1064 93.078286 1577 3948 7 chr3B.!!$R4 2371

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 180 0.515127 TTATTGCGTTGCACCACTCG 59.485 50.0 0.00 0.00 38.71 4.18 F
1118 2674 0.249489 ATCTCACGCGGCATTACTCC 60.249 55.0 12.47 0.00 0.00 3.85 F
2533 9668 0.390492 TGGCAGACTGTCACTGTCAG 59.610 55.0 16.38 9.87 43.52 3.51 F
2534 9669 0.390860 GGCAGACTGTCACTGTCAGT 59.609 55.0 16.38 8.46 46.86 3.41 F
4140 11569 1.106285 CCCAGGAGCATACAAAAGGC 58.894 55.0 0.00 0.00 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 2902 0.879090 CTTACGCCAACTTCCCCAAC 59.121 55.000 0.00 0.0 0.00 3.77 R
3024 10383 3.282021 GAAGCACTCATCCTGGCAATAA 58.718 45.455 0.00 0.0 0.00 1.40 R
4349 11778 0.747283 TTCTCCCCGCGAGTCTCTAC 60.747 60.000 8.23 0.0 39.84 2.59 R
4429 11861 2.356553 GCGACCGCTACCAACACA 60.357 61.111 7.19 0.0 38.26 3.72 R
5286 14883 0.103208 GCAGTATCACAGACCTCGGG 59.897 60.000 0.00 0.0 0.00 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.201145 TCAGAGAGTACTTTGTAACAGTGAAC 58.799 38.462 0.00 0.00 31.39 3.18
41 42 3.827008 ACAGTGAACGGAGATGCATAT 57.173 42.857 0.00 0.00 0.00 1.78
70 75 6.423604 GCTGCCTAAAATTGTAAAGAAAAGCA 59.576 34.615 0.00 0.00 0.00 3.91
94 99 7.042658 GCATTTACCACACTGAGCTTATAGTAC 60.043 40.741 0.00 0.00 0.00 2.73
95 100 7.713734 TTTACCACACTGAGCTTATAGTACT 57.286 36.000 0.00 0.00 0.00 2.73
96 101 5.838531 ACCACACTGAGCTTATAGTACTC 57.161 43.478 0.00 0.00 0.00 2.59
97 102 4.645588 ACCACACTGAGCTTATAGTACTCC 59.354 45.833 0.00 0.00 0.00 3.85
98 103 4.038162 CCACACTGAGCTTATAGTACTCCC 59.962 50.000 0.00 0.00 0.00 4.30
99 104 4.890581 CACACTGAGCTTATAGTACTCCCT 59.109 45.833 0.00 0.00 0.00 4.20
100 105 5.009210 CACACTGAGCTTATAGTACTCCCTC 59.991 48.000 0.00 0.19 0.00 4.30
101 106 5.103855 ACACTGAGCTTATAGTACTCCCTCT 60.104 44.000 0.00 0.00 0.00 3.69
102 107 5.240623 CACTGAGCTTATAGTACTCCCTCTG 59.759 48.000 0.00 6.17 0.00 3.35
103 108 5.103855 ACTGAGCTTATAGTACTCCCTCTGT 60.104 44.000 0.00 6.74 0.00 3.41
104 109 5.767670 TGAGCTTATAGTACTCCCTCTGTT 58.232 41.667 0.00 0.00 0.00 3.16
105 110 5.828859 TGAGCTTATAGTACTCCCTCTGTTC 59.171 44.000 0.00 0.00 0.00 3.18
106 111 5.141910 AGCTTATAGTACTCCCTCTGTTCC 58.858 45.833 0.00 0.00 0.00 3.62
107 112 5.103430 AGCTTATAGTACTCCCTCTGTTCCT 60.103 44.000 0.00 0.00 0.00 3.36
108 113 5.599242 GCTTATAGTACTCCCTCTGTTCCTT 59.401 44.000 0.00 0.00 0.00 3.36
109 114 6.461788 GCTTATAGTACTCCCTCTGTTCCTTG 60.462 46.154 0.00 0.00 0.00 3.61
110 115 2.541466 AGTACTCCCTCTGTTCCTTGG 58.459 52.381 0.00 0.00 0.00 3.61
111 116 2.158143 AGTACTCCCTCTGTTCCTTGGT 60.158 50.000 0.00 0.00 0.00 3.67
112 117 2.715763 ACTCCCTCTGTTCCTTGGTA 57.284 50.000 0.00 0.00 0.00 3.25
113 118 3.207044 ACTCCCTCTGTTCCTTGGTAT 57.793 47.619 0.00 0.00 0.00 2.73
114 119 4.348020 ACTCCCTCTGTTCCTTGGTATA 57.652 45.455 0.00 0.00 0.00 1.47
115 120 4.695606 ACTCCCTCTGTTCCTTGGTATAA 58.304 43.478 0.00 0.00 0.00 0.98
116 121 4.717280 ACTCCCTCTGTTCCTTGGTATAAG 59.283 45.833 0.00 0.00 0.00 1.73
117 122 4.037927 TCCCTCTGTTCCTTGGTATAAGG 58.962 47.826 0.00 0.00 38.78 2.69
118 123 3.780850 CCCTCTGTTCCTTGGTATAAGGT 59.219 47.826 5.67 0.00 38.55 3.50
119 124 4.384208 CCCTCTGTTCCTTGGTATAAGGTG 60.384 50.000 5.67 0.00 38.55 4.00
120 125 4.225267 CCTCTGTTCCTTGGTATAAGGTGT 59.775 45.833 5.67 0.00 38.55 4.16
121 126 5.424252 CCTCTGTTCCTTGGTATAAGGTGTA 59.576 44.000 5.67 0.00 38.55 2.90
122 127 6.099845 CCTCTGTTCCTTGGTATAAGGTGTAT 59.900 42.308 5.67 0.00 38.55 2.29
123 128 7.289317 CCTCTGTTCCTTGGTATAAGGTGTATA 59.711 40.741 5.67 0.00 38.55 1.47
124 129 8.246430 TCTGTTCCTTGGTATAAGGTGTATAG 57.754 38.462 5.67 2.20 38.55 1.31
125 130 8.063153 TCTGTTCCTTGGTATAAGGTGTATAGA 58.937 37.037 5.67 4.06 38.55 1.98
126 131 8.792830 TGTTCCTTGGTATAAGGTGTATAGAT 57.207 34.615 5.67 0.00 38.55 1.98
127 132 9.220906 TGTTCCTTGGTATAAGGTGTATAGATT 57.779 33.333 5.67 0.00 38.55 2.40
163 168 7.851822 AATGCGAAATATAAGGTTTATTGCG 57.148 32.000 0.00 0.50 39.86 4.85
164 169 6.366315 TGCGAAATATAAGGTTTATTGCGT 57.634 33.333 5.88 0.00 39.33 5.24
165 170 6.787225 TGCGAAATATAAGGTTTATTGCGTT 58.213 32.000 5.88 0.00 39.33 4.84
166 171 6.689241 TGCGAAATATAAGGTTTATTGCGTTG 59.311 34.615 5.88 0.00 39.33 4.10
167 172 6.344702 GCGAAATATAAGGTTTATTGCGTTGC 60.345 38.462 5.88 0.00 39.33 4.17
168 173 6.689241 CGAAATATAAGGTTTATTGCGTTGCA 59.311 34.615 0.00 0.00 34.69 4.08
169 174 7.305190 CGAAATATAAGGTTTATTGCGTTGCAC 60.305 37.037 0.00 0.00 38.71 4.57
170 175 2.432206 AAGGTTTATTGCGTTGCACC 57.568 45.000 0.00 0.00 38.71 5.01
171 176 1.323412 AGGTTTATTGCGTTGCACCA 58.677 45.000 0.00 0.00 38.71 4.17
172 177 1.000717 AGGTTTATTGCGTTGCACCAC 60.001 47.619 0.00 0.00 38.71 4.16
173 178 1.000717 GGTTTATTGCGTTGCACCACT 60.001 47.619 0.00 0.00 38.71 4.00
174 179 2.315901 GTTTATTGCGTTGCACCACTC 58.684 47.619 0.00 0.00 38.71 3.51
175 180 0.515127 TTATTGCGTTGCACCACTCG 59.485 50.000 0.00 0.00 38.71 4.18
176 181 0.601576 TATTGCGTTGCACCACTCGT 60.602 50.000 0.00 0.00 38.71 4.18
177 182 1.444119 ATTGCGTTGCACCACTCGTT 61.444 50.000 0.00 0.00 38.71 3.85
178 183 1.649390 TTGCGTTGCACCACTCGTTT 61.649 50.000 0.00 0.00 38.71 3.60
179 184 1.654137 GCGTTGCACCACTCGTTTG 60.654 57.895 0.00 0.00 0.00 2.93
180 185 1.010125 CGTTGCACCACTCGTTTGG 60.010 57.895 3.82 3.82 43.04 3.28
181 186 1.433053 CGTTGCACCACTCGTTTGGA 61.433 55.000 11.38 0.00 39.24 3.53
182 187 0.951558 GTTGCACCACTCGTTTGGAT 59.048 50.000 11.38 0.00 39.24 3.41
183 188 2.147958 GTTGCACCACTCGTTTGGATA 58.852 47.619 11.38 0.00 39.24 2.59
184 189 2.747446 GTTGCACCACTCGTTTGGATAT 59.253 45.455 11.38 0.00 39.24 1.63
185 190 3.066291 TGCACCACTCGTTTGGATATT 57.934 42.857 11.38 0.00 39.24 1.28
186 191 3.417101 TGCACCACTCGTTTGGATATTT 58.583 40.909 11.38 0.00 39.24 1.40
187 192 3.823873 TGCACCACTCGTTTGGATATTTT 59.176 39.130 11.38 0.00 39.24 1.82
188 193 4.279671 TGCACCACTCGTTTGGATATTTTT 59.720 37.500 11.38 0.00 39.24 1.94
224 229 9.739276 TGATTACATTTCCTTATATAGGGCAAG 57.261 33.333 6.02 0.07 44.86 4.01
225 230 7.996098 TTACATTTCCTTATATAGGGCAAGC 57.004 36.000 6.02 0.00 44.86 4.01
226 231 6.206180 ACATTTCCTTATATAGGGCAAGCT 57.794 37.500 6.02 0.00 44.86 3.74
227 232 6.241645 ACATTTCCTTATATAGGGCAAGCTC 58.758 40.000 6.02 0.00 44.86 4.09
228 233 4.910458 TTCCTTATATAGGGCAAGCTCC 57.090 45.455 6.02 0.00 44.86 4.70
229 234 4.147667 TCCTTATATAGGGCAAGCTCCT 57.852 45.455 6.02 7.16 44.86 3.69
230 235 4.097418 TCCTTATATAGGGCAAGCTCCTC 58.903 47.826 6.02 0.00 44.86 3.71
231 236 4.100373 CCTTATATAGGGCAAGCTCCTCT 58.900 47.826 0.00 0.00 40.67 3.69
232 237 5.016352 TCCTTATATAGGGCAAGCTCCTCTA 59.984 44.000 6.02 0.00 44.86 2.43
233 238 5.902431 CCTTATATAGGGCAAGCTCCTCTAT 59.098 44.000 10.55 10.55 40.67 1.98
234 239 6.385467 CCTTATATAGGGCAAGCTCCTCTATT 59.615 42.308 10.88 4.22 40.67 1.73
235 240 7.092668 CCTTATATAGGGCAAGCTCCTCTATTT 60.093 40.741 10.88 7.07 40.67 1.40
236 241 6.710499 ATATAGGGCAAGCTCCTCTATTTT 57.290 37.500 10.88 0.08 35.92 1.82
237 242 3.289407 AGGGCAAGCTCCTCTATTTTC 57.711 47.619 0.00 0.00 0.00 2.29
238 243 2.849318 AGGGCAAGCTCCTCTATTTTCT 59.151 45.455 0.00 0.00 0.00 2.52
239 244 3.118075 AGGGCAAGCTCCTCTATTTTCTC 60.118 47.826 0.00 0.00 0.00 2.87
240 245 3.370953 GGGCAAGCTCCTCTATTTTCTCA 60.371 47.826 0.00 0.00 0.00 3.27
241 246 4.459330 GGCAAGCTCCTCTATTTTCTCAT 58.541 43.478 0.00 0.00 0.00 2.90
242 247 4.275443 GGCAAGCTCCTCTATTTTCTCATG 59.725 45.833 0.00 0.00 0.00 3.07
243 248 4.880696 GCAAGCTCCTCTATTTTCTCATGT 59.119 41.667 0.00 0.00 0.00 3.21
244 249 5.007528 GCAAGCTCCTCTATTTTCTCATGTC 59.992 44.000 0.00 0.00 0.00 3.06
245 250 5.946942 AGCTCCTCTATTTTCTCATGTCA 57.053 39.130 0.00 0.00 0.00 3.58
246 251 6.305272 AGCTCCTCTATTTTCTCATGTCAA 57.695 37.500 0.00 0.00 0.00 3.18
247 252 6.897986 AGCTCCTCTATTTTCTCATGTCAAT 58.102 36.000 0.00 0.00 0.00 2.57
248 253 7.344913 AGCTCCTCTATTTTCTCATGTCAATT 58.655 34.615 0.00 0.00 0.00 2.32
249 254 8.489489 AGCTCCTCTATTTTCTCATGTCAATTA 58.511 33.333 0.00 0.00 0.00 1.40
250 255 8.772705 GCTCCTCTATTTTCTCATGTCAATTAG 58.227 37.037 0.00 0.00 0.00 1.73
251 256 9.829507 CTCCTCTATTTTCTCATGTCAATTAGT 57.170 33.333 0.00 0.00 0.00 2.24
252 257 9.823647 TCCTCTATTTTCTCATGTCAATTAGTC 57.176 33.333 0.00 0.00 0.00 2.59
253 258 9.605275 CCTCTATTTTCTCATGTCAATTAGTCA 57.395 33.333 0.00 0.00 0.00 3.41
255 260 9.605275 TCTATTTTCTCATGTCAATTAGTCAGG 57.395 33.333 0.00 0.00 0.00 3.86
256 261 9.388506 CTATTTTCTCATGTCAATTAGTCAGGT 57.611 33.333 0.00 0.00 0.00 4.00
257 262 7.439157 TTTTCTCATGTCAATTAGTCAGGTG 57.561 36.000 0.00 0.00 0.00 4.00
258 263 4.507710 TCTCATGTCAATTAGTCAGGTGC 58.492 43.478 0.00 0.00 0.00 5.01
259 264 4.020307 TCTCATGTCAATTAGTCAGGTGCA 60.020 41.667 0.00 0.00 0.00 4.57
260 265 4.650734 TCATGTCAATTAGTCAGGTGCAA 58.349 39.130 0.00 0.00 0.00 4.08
261 266 5.255687 TCATGTCAATTAGTCAGGTGCAAT 58.744 37.500 0.00 0.00 0.00 3.56
262 267 5.355071 TCATGTCAATTAGTCAGGTGCAATC 59.645 40.000 0.00 0.00 0.00 2.67
263 268 4.910195 TGTCAATTAGTCAGGTGCAATCT 58.090 39.130 0.00 0.00 0.00 2.40
264 269 4.937620 TGTCAATTAGTCAGGTGCAATCTC 59.062 41.667 0.00 0.00 0.00 2.75
265 270 5.181748 GTCAATTAGTCAGGTGCAATCTCT 58.818 41.667 0.00 0.00 0.00 3.10
266 271 5.645497 GTCAATTAGTCAGGTGCAATCTCTT 59.355 40.000 0.00 0.00 0.00 2.85
267 272 6.150140 GTCAATTAGTCAGGTGCAATCTCTTT 59.850 38.462 0.00 0.00 0.00 2.52
268 273 6.372659 TCAATTAGTCAGGTGCAATCTCTTTC 59.627 38.462 0.00 0.00 0.00 2.62
269 274 3.777106 AGTCAGGTGCAATCTCTTTCA 57.223 42.857 0.00 0.00 0.00 2.69
270 275 4.090761 AGTCAGGTGCAATCTCTTTCAA 57.909 40.909 0.00 0.00 0.00 2.69
271 276 4.464008 AGTCAGGTGCAATCTCTTTCAAA 58.536 39.130 0.00 0.00 0.00 2.69
272 277 4.889409 AGTCAGGTGCAATCTCTTTCAAAA 59.111 37.500 0.00 0.00 0.00 2.44
273 278 5.537674 AGTCAGGTGCAATCTCTTTCAAAAT 59.462 36.000 0.00 0.00 0.00 1.82
274 279 6.041296 AGTCAGGTGCAATCTCTTTCAAAATT 59.959 34.615 0.00 0.00 0.00 1.82
275 280 6.703165 GTCAGGTGCAATCTCTTTCAAAATTT 59.297 34.615 0.00 0.00 0.00 1.82
276 281 6.702723 TCAGGTGCAATCTCTTTCAAAATTTG 59.297 34.615 0.00 0.00 0.00 2.32
277 282 6.480981 CAGGTGCAATCTCTTTCAAAATTTGT 59.519 34.615 5.56 0.00 0.00 2.83
278 283 6.480981 AGGTGCAATCTCTTTCAAAATTTGTG 59.519 34.615 5.56 0.00 0.00 3.33
279 284 6.479660 GGTGCAATCTCTTTCAAAATTTGTGA 59.520 34.615 5.56 2.87 0.00 3.58
280 285 7.011295 GGTGCAATCTCTTTCAAAATTTGTGAA 59.989 33.333 5.56 0.00 33.21 3.18
281 286 8.389603 GTGCAATCTCTTTCAAAATTTGTGAAA 58.610 29.630 12.93 12.93 41.50 2.69
282 287 9.111613 TGCAATCTCTTTCAAAATTTGTGAAAT 57.888 25.926 13.76 0.00 42.49 2.17
283 288 9.940166 GCAATCTCTTTCAAAATTTGTGAAATT 57.060 25.926 13.76 4.54 42.49 1.82
297 302 8.735692 ATTTGTGAAATTTTCTTTCCACATGT 57.264 26.923 10.33 0.00 0.00 3.21
298 303 7.536895 TTGTGAAATTTTCTTTCCACATGTG 57.463 32.000 19.31 19.31 0.00 3.21
299 304 6.638610 TGTGAAATTTTCTTTCCACATGTGT 58.361 32.000 23.79 0.87 0.00 3.72
300 305 7.102346 TGTGAAATTTTCTTTCCACATGTGTT 58.898 30.769 23.79 7.81 0.00 3.32
301 306 7.277539 TGTGAAATTTTCTTTCCACATGTGTTC 59.722 33.333 23.79 15.97 0.00 3.18
302 307 7.492344 GTGAAATTTTCTTTCCACATGTGTTCT 59.508 33.333 23.79 1.01 0.00 3.01
303 308 8.040132 TGAAATTTTCTTTCCACATGTGTTCTT 58.960 29.630 23.79 3.28 0.00 2.52
304 309 8.791327 AAATTTTCTTTCCACATGTGTTCTTT 57.209 26.923 23.79 7.75 0.00 2.52
305 310 9.883142 AAATTTTCTTTCCACATGTGTTCTTTA 57.117 25.926 23.79 3.23 0.00 1.85
306 311 9.883142 AATTTTCTTTCCACATGTGTTCTTTAA 57.117 25.926 23.79 10.21 0.00 1.52
308 313 9.883142 TTTTCTTTCCACATGTGTTCTTTAATT 57.117 25.926 23.79 0.00 0.00 1.40
309 314 9.883142 TTTCTTTCCACATGTGTTCTTTAATTT 57.117 25.926 23.79 0.00 0.00 1.82
310 315 9.528018 TTCTTTCCACATGTGTTCTTTAATTTC 57.472 29.630 23.79 0.00 0.00 2.17
311 316 8.141268 TCTTTCCACATGTGTTCTTTAATTTCC 58.859 33.333 23.79 0.00 0.00 3.13
312 317 6.007936 TCCACATGTGTTCTTTAATTTCCG 57.992 37.500 23.79 4.06 0.00 4.30
313 318 5.533154 TCCACATGTGTTCTTTAATTTCCGT 59.467 36.000 23.79 0.00 0.00 4.69
314 319 6.711194 TCCACATGTGTTCTTTAATTTCCGTA 59.289 34.615 23.79 0.00 0.00 4.02
315 320 6.799925 CCACATGTGTTCTTTAATTTCCGTAC 59.200 38.462 23.79 0.00 0.00 3.67
316 321 6.799925 CACATGTGTTCTTTAATTTCCGTACC 59.200 38.462 18.03 0.00 0.00 3.34
317 322 6.487331 ACATGTGTTCTTTAATTTCCGTACCA 59.513 34.615 0.00 0.00 0.00 3.25
318 323 6.939132 TGTGTTCTTTAATTTCCGTACCAA 57.061 33.333 0.00 0.00 0.00 3.67
319 324 7.330900 TGTGTTCTTTAATTTCCGTACCAAA 57.669 32.000 0.00 0.00 0.00 3.28
320 325 7.769220 TGTGTTCTTTAATTTCCGTACCAAAA 58.231 30.769 0.00 0.00 0.00 2.44
321 326 8.248945 TGTGTTCTTTAATTTCCGTACCAAAAA 58.751 29.630 0.00 0.00 0.00 1.94
322 327 8.533965 GTGTTCTTTAATTTCCGTACCAAAAAC 58.466 33.333 0.00 0.00 0.00 2.43
323 328 8.468399 TGTTCTTTAATTTCCGTACCAAAAACT 58.532 29.630 0.00 0.00 0.00 2.66
324 329 9.949174 GTTCTTTAATTTCCGTACCAAAAACTA 57.051 29.630 0.00 0.00 0.00 2.24
331 336 6.464895 TTCCGTACCAAAAACTATACAACG 57.535 37.500 0.00 0.00 0.00 4.10
332 337 4.928615 TCCGTACCAAAAACTATACAACGG 59.071 41.667 3.80 3.80 46.50 4.44
334 339 6.086319 CGTACCAAAAACTATACAACGGAG 57.914 41.667 0.00 0.00 0.00 4.63
335 340 5.062558 CGTACCAAAAACTATACAACGGAGG 59.937 44.000 0.00 0.00 0.00 4.30
336 341 4.329392 ACCAAAAACTATACAACGGAGGG 58.671 43.478 0.00 0.00 0.00 4.30
337 342 4.041938 ACCAAAAACTATACAACGGAGGGA 59.958 41.667 0.00 0.00 0.00 4.20
338 343 4.634443 CCAAAAACTATACAACGGAGGGAG 59.366 45.833 0.00 0.00 0.00 4.30
339 344 5.243207 CAAAAACTATACAACGGAGGGAGT 58.757 41.667 0.00 0.00 0.00 3.85
340 345 6.400568 CAAAAACTATACAACGGAGGGAGTA 58.599 40.000 0.00 0.00 0.00 2.59
341 346 5.848833 AAACTATACAACGGAGGGAGTAG 57.151 43.478 0.00 0.00 0.00 2.57
342 347 4.785346 ACTATACAACGGAGGGAGTAGA 57.215 45.455 0.00 0.00 0.00 2.59
343 348 5.121380 ACTATACAACGGAGGGAGTAGAA 57.879 43.478 0.00 0.00 0.00 2.10
344 349 5.513233 ACTATACAACGGAGGGAGTAGAAA 58.487 41.667 0.00 0.00 0.00 2.52
345 350 5.954150 ACTATACAACGGAGGGAGTAGAAAA 59.046 40.000 0.00 0.00 0.00 2.29
346 351 3.679824 ACAACGGAGGGAGTAGAAAAG 57.320 47.619 0.00 0.00 0.00 2.27
347 352 3.236896 ACAACGGAGGGAGTAGAAAAGA 58.763 45.455 0.00 0.00 0.00 2.52
348 353 3.258622 ACAACGGAGGGAGTAGAAAAGAG 59.741 47.826 0.00 0.00 0.00 2.85
349 354 3.453059 ACGGAGGGAGTAGAAAAGAGA 57.547 47.619 0.00 0.00 0.00 3.10
350 355 3.358118 ACGGAGGGAGTAGAAAAGAGAG 58.642 50.000 0.00 0.00 0.00 3.20
558 1374 4.214383 CAAGACGGCGCGCATCTG 62.214 66.667 34.42 21.97 0.00 2.90
1118 2674 0.249489 ATCTCACGCGGCATTACTCC 60.249 55.000 12.47 0.00 0.00 3.85
1315 2871 3.295973 TGCATGATAAAGGGTAAAGGCC 58.704 45.455 0.00 0.00 0.00 5.19
1346 2902 4.095932 CACCACATGGATCAGAAACATCTG 59.904 45.833 4.53 0.00 38.94 2.90
1362 2918 1.528309 CTGTTGGGGAAGTTGGCGT 60.528 57.895 0.00 0.00 0.00 5.68
1401 2957 2.165641 TGTCGCTAACATCTCGGTTGAT 59.834 45.455 0.00 0.00 31.20 2.57
2086 7198 3.084786 GTTCCTCAAATCAACCAGGGAG 58.915 50.000 0.00 0.00 0.00 4.30
2533 9668 0.390492 TGGCAGACTGTCACTGTCAG 59.610 55.000 16.38 9.87 43.52 3.51
2534 9669 0.390860 GGCAGACTGTCACTGTCAGT 59.609 55.000 16.38 8.46 46.86 3.41
3122 10482 5.825593 TTGATAAGTCCACTCCTGAACTT 57.174 39.130 0.00 0.00 36.09 2.66
3798 11224 5.304614 AGATTCCTGCTTACGGTATGTATGT 59.695 40.000 3.40 0.00 31.81 2.29
3799 11225 6.492429 AGATTCCTGCTTACGGTATGTATGTA 59.508 38.462 3.40 0.00 31.81 2.29
3807 11233 7.140705 GCTTACGGTATGTATGTATGTGTGTA 58.859 38.462 3.40 0.00 31.81 2.90
4140 11569 1.106285 CCCAGGAGCATACAAAAGGC 58.894 55.000 0.00 0.00 0.00 4.35
4163 11592 3.119708 GCTTGTAGATGTTTGCCTGGAAG 60.120 47.826 0.00 0.00 0.00 3.46
4327 11756 3.632643 TCTGATGAATGGCAGCAAGTA 57.367 42.857 0.00 0.00 43.23 2.24
4429 11861 2.315176 TGGCTGTATTTTGTTGGCTGT 58.685 42.857 0.00 0.00 0.00 4.40
4432 11864 3.052036 GCTGTATTTTGTTGGCTGTGTG 58.948 45.455 0.00 0.00 0.00 3.82
4513 11945 4.377839 TCTTGTTATTCTCTCTCTGCCG 57.622 45.455 0.00 0.00 0.00 5.69
4528 11960 3.728845 TCTGCCGGAAGAGTAATTATGC 58.271 45.455 8.55 0.00 0.00 3.14
4611 12053 4.909305 CGTGCATGTAAAAAGGTAGTGTTG 59.091 41.667 0.00 0.00 0.00 3.33
4626 12069 5.235831 GGTAGTGTTGTGGAAACTAGTGTTC 59.764 44.000 0.00 2.84 34.96 3.18
4690 12151 0.746063 CTGGTGCCAGCTTTTGTTCA 59.254 50.000 5.19 0.00 37.24 3.18
4696 12157 2.694628 TGCCAGCTTTTGTTCATGTTCT 59.305 40.909 0.00 0.00 0.00 3.01
4756 12218 2.146342 ACATCTGCGGCTATATGTTGC 58.854 47.619 0.00 0.00 0.00 4.17
4836 12301 2.997485 GCTGTTGAGCAAGTTAAGGG 57.003 50.000 0.00 0.00 45.46 3.95
4842 12307 5.197451 TGTTGAGCAAGTTAAGGGAAAAGA 58.803 37.500 0.00 0.00 0.00 2.52
4868 12333 7.849322 AAAACAATGGTTGGGAGTAGTATTT 57.151 32.000 0.00 0.00 37.30 1.40
4876 14382 7.170277 TGGTTGGGAGTAGTATTTTCTTAACC 58.830 38.462 0.00 0.00 34.72 2.85
4882 14388 7.277319 GGGAGTAGTATTTTCTTAACCAAGTCG 59.723 40.741 0.00 0.00 33.20 4.18
4951 14457 2.939640 GCAAGCTGAAGATCCCGGTTTA 60.940 50.000 0.00 0.00 0.00 2.01
4967 14473 2.312390 GTTTAAGGTTTGGTGAGCCCA 58.688 47.619 0.00 0.00 43.27 5.36
4974 14480 3.811702 TGGTGAGCCCAAGAGGAG 58.188 61.111 0.00 0.00 41.50 3.69
4975 14481 1.920325 TGGTGAGCCCAAGAGGAGG 60.920 63.158 0.00 0.00 41.50 4.30
4976 14482 1.613630 GGTGAGCCCAAGAGGAGGA 60.614 63.158 0.00 0.00 38.24 3.71
4977 14483 1.201429 GGTGAGCCCAAGAGGAGGAA 61.201 60.000 0.00 0.00 38.24 3.36
4978 14484 0.251634 GTGAGCCCAAGAGGAGGAAG 59.748 60.000 0.00 0.00 38.24 3.46
4979 14485 0.117140 TGAGCCCAAGAGGAGGAAGA 59.883 55.000 0.00 0.00 38.24 2.87
4980 14486 1.280457 GAGCCCAAGAGGAGGAAGAA 58.720 55.000 0.00 0.00 38.24 2.52
4981 14487 1.209261 GAGCCCAAGAGGAGGAAGAAG 59.791 57.143 0.00 0.00 38.24 2.85
4982 14488 0.254462 GCCCAAGAGGAGGAAGAAGG 59.746 60.000 0.00 0.00 38.24 3.46
4983 14489 0.254462 CCCAAGAGGAGGAAGAAGGC 59.746 60.000 0.00 0.00 38.24 4.35
4984 14490 0.254462 CCAAGAGGAGGAAGAAGGCC 59.746 60.000 0.00 0.00 36.89 5.19
4985 14491 1.284313 CAAGAGGAGGAAGAAGGCCT 58.716 55.000 0.00 0.00 38.81 5.19
4986 14492 1.632920 CAAGAGGAGGAAGAAGGCCTT 59.367 52.381 20.65 20.65 35.44 4.35
4987 14493 1.284313 AGAGGAGGAAGAAGGCCTTG 58.716 55.000 26.25 0.00 35.44 3.61
4988 14494 0.393673 GAGGAGGAAGAAGGCCTTGC 60.394 60.000 26.25 14.60 42.74 4.01
5012 14518 3.818787 CCGACGTTCCGGTCCGAT 61.819 66.667 14.39 6.46 44.23 4.18
5013 14519 2.277756 CGACGTTCCGGTCCGATC 60.278 66.667 14.39 12.61 33.30 3.69
5016 14522 0.594284 GACGTTCCGGTCCGATCATC 60.594 60.000 14.39 0.00 0.00 2.92
5041 14547 0.447801 CGACGCCAGGAAAATCAAGG 59.552 55.000 0.00 0.00 0.00 3.61
5093 14599 1.547372 TGTCGACCTTACCAAGTAGCC 59.453 52.381 14.12 0.00 0.00 3.93
5095 14601 0.177373 CGACCTTACCAAGTAGCCCC 59.823 60.000 0.00 0.00 0.00 5.80
5105 14611 3.518003 GTAGCCCCAATGCTGCTG 58.482 61.111 0.00 0.00 42.77 4.41
5106 14612 2.440796 TAGCCCCAATGCTGCTGC 60.441 61.111 8.89 8.89 42.77 5.25
5112 14618 4.824166 CAATGCTGCTGCCGCGAC 62.824 66.667 8.23 0.00 39.65 5.19
5151 14657 2.687200 AGTGCTCCGTGGGGCATA 60.687 61.111 17.89 0.00 40.66 3.14
5152 14658 2.513897 GTGCTCCGTGGGGCATAC 60.514 66.667 17.89 0.56 40.66 2.39
5153 14659 4.155733 TGCTCCGTGGGGCATACG 62.156 66.667 9.97 5.88 40.98 3.06
5195 14792 4.219999 GGCGGCCTCTCTGCTCTC 62.220 72.222 12.87 0.00 46.32 3.20
5229 14826 3.187414 GCTGCTGCGCTGAGACTC 61.187 66.667 19.32 0.00 0.00 3.36
5291 14888 4.760047 CAACACCCCGAGCCCGAG 62.760 72.222 0.00 0.00 38.22 4.63
5359 14977 5.976458 ACTTTCAGATCTCAGAGTTCCATC 58.024 41.667 5.04 0.00 0.00 3.51
5364 14982 3.573538 AGATCTCAGAGTTCCATCCATCG 59.426 47.826 5.04 0.00 0.00 3.84
5446 15088 1.542375 ACAAGGGCTGGATGGGACT 60.542 57.895 0.00 0.00 0.00 3.85
5447 15089 1.142688 ACAAGGGCTGGATGGGACTT 61.143 55.000 0.00 0.00 0.00 3.01
5448 15090 0.394899 CAAGGGCTGGATGGGACTTC 60.395 60.000 0.00 0.00 0.00 3.01
5449 15091 1.575447 AAGGGCTGGATGGGACTTCC 61.575 60.000 0.00 0.00 0.00 3.46
5466 15108 3.787001 CCCCCGGAGAGCAAGGAC 61.787 72.222 0.73 0.00 0.00 3.85
5467 15109 2.685380 CCCCGGAGAGCAAGGACT 60.685 66.667 0.73 0.00 0.00 3.85
5468 15110 2.581354 CCCGGAGAGCAAGGACTG 59.419 66.667 0.73 0.00 0.00 3.51
5469 15111 1.984570 CCCGGAGAGCAAGGACTGA 60.985 63.158 0.73 0.00 0.00 3.41
5470 15112 1.216710 CCGGAGAGCAAGGACTGAC 59.783 63.158 0.00 0.00 0.00 3.51
5471 15113 1.254284 CCGGAGAGCAAGGACTGACT 61.254 60.000 0.00 0.00 0.00 3.41
5472 15114 0.108898 CGGAGAGCAAGGACTGACTG 60.109 60.000 0.00 0.00 0.00 3.51
5473 15115 0.390998 GGAGAGCAAGGACTGACTGC 60.391 60.000 0.00 0.00 0.00 4.40
5474 15116 0.319728 GAGAGCAAGGACTGACTGCA 59.680 55.000 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.723942 TTTCTTTACAATTTTAGGCAGCAAAA 57.276 26.923 0.00 0.00 0.00 2.44
70 75 8.307582 AGTACTATAAGCTCAGTGTGGTAAAT 57.692 34.615 0.00 0.00 0.00 1.40
94 99 4.101741 CCTTATACCAAGGAACAGAGGGAG 59.898 50.000 0.00 0.00 39.81 4.30
95 100 4.037927 CCTTATACCAAGGAACAGAGGGA 58.962 47.826 0.00 0.00 39.81 4.20
96 101 3.780850 ACCTTATACCAAGGAACAGAGGG 59.219 47.826 9.96 0.00 39.81 4.30
97 102 4.225267 ACACCTTATACCAAGGAACAGAGG 59.775 45.833 9.96 0.00 39.81 3.69
98 103 5.422214 ACACCTTATACCAAGGAACAGAG 57.578 43.478 9.96 0.00 39.81 3.35
99 104 8.063153 TCTATACACCTTATACCAAGGAACAGA 58.937 37.037 9.96 2.87 39.81 3.41
100 105 8.246430 TCTATACACCTTATACCAAGGAACAG 57.754 38.462 9.96 0.40 39.81 3.16
101 106 8.792830 ATCTATACACCTTATACCAAGGAACA 57.207 34.615 9.96 0.00 39.81 3.18
137 142 8.751335 CGCAATAAACCTTATATTTCGCATTTT 58.249 29.630 0.00 0.00 0.00 1.82
138 143 7.918562 ACGCAATAAACCTTATATTTCGCATTT 59.081 29.630 0.00 0.00 34.30 2.32
139 144 7.422399 ACGCAATAAACCTTATATTTCGCATT 58.578 30.769 0.00 0.00 34.30 3.56
140 145 6.966021 ACGCAATAAACCTTATATTTCGCAT 58.034 32.000 0.00 0.00 34.30 4.73
141 146 6.366315 ACGCAATAAACCTTATATTTCGCA 57.634 33.333 0.00 0.00 34.30 5.10
142 147 6.344702 GCAACGCAATAAACCTTATATTTCGC 60.345 38.462 0.00 0.00 34.30 4.70
143 148 6.689241 TGCAACGCAATAAACCTTATATTTCG 59.311 34.615 0.00 0.00 36.12 3.46
144 149 7.043656 GGTGCAACGCAATAAACCTTATATTTC 60.044 37.037 0.00 0.00 41.47 2.17
145 150 6.754675 GGTGCAACGCAATAAACCTTATATTT 59.245 34.615 0.00 0.00 41.47 1.40
146 151 6.127591 TGGTGCAACGCAATAAACCTTATATT 60.128 34.615 0.00 0.00 41.47 1.28
147 152 5.358442 TGGTGCAACGCAATAAACCTTATAT 59.642 36.000 0.00 0.00 41.47 0.86
148 153 4.700692 TGGTGCAACGCAATAAACCTTATA 59.299 37.500 0.00 0.00 41.47 0.98
149 154 3.508012 TGGTGCAACGCAATAAACCTTAT 59.492 39.130 0.00 0.00 41.47 1.73
150 155 2.885266 TGGTGCAACGCAATAAACCTTA 59.115 40.909 0.00 0.00 41.47 2.69
151 156 1.683917 TGGTGCAACGCAATAAACCTT 59.316 42.857 0.00 0.00 41.47 3.50
152 157 1.000717 GTGGTGCAACGCAATAAACCT 60.001 47.619 11.22 0.00 41.47 3.50
153 158 1.000717 AGTGGTGCAACGCAATAAACC 60.001 47.619 19.16 0.00 41.47 3.27
154 159 2.315901 GAGTGGTGCAACGCAATAAAC 58.684 47.619 19.16 0.00 41.47 2.01
155 160 1.069568 CGAGTGGTGCAACGCAATAAA 60.070 47.619 19.16 0.00 41.47 1.40
156 161 0.515127 CGAGTGGTGCAACGCAATAA 59.485 50.000 19.16 0.00 41.47 1.40
157 162 0.601576 ACGAGTGGTGCAACGCAATA 60.602 50.000 19.16 0.00 41.47 1.90
158 163 1.444119 AACGAGTGGTGCAACGCAAT 61.444 50.000 19.16 0.00 41.47 3.56
159 164 1.649390 AAACGAGTGGTGCAACGCAA 61.649 50.000 19.16 0.00 41.47 4.85
160 165 2.109739 AAACGAGTGGTGCAACGCA 61.110 52.632 19.16 0.00 38.12 5.24
161 166 1.654137 CAAACGAGTGGTGCAACGC 60.654 57.895 7.36 7.36 38.12 4.84
162 167 1.010125 CCAAACGAGTGGTGCAACG 60.010 57.895 0.00 0.00 38.12 4.10
163 168 0.951558 ATCCAAACGAGTGGTGCAAC 59.048 50.000 0.00 0.00 39.88 4.17
164 169 2.552599 TATCCAAACGAGTGGTGCAA 57.447 45.000 8.62 0.00 39.88 4.08
165 170 2.779755 ATATCCAAACGAGTGGTGCA 57.220 45.000 8.62 0.00 39.88 4.57
166 171 4.434713 AAAATATCCAAACGAGTGGTGC 57.565 40.909 8.62 0.00 39.88 5.01
209 214 4.100373 AGAGGAGCTTGCCCTATATAAGG 58.900 47.826 0.00 0.00 46.09 2.69
210 215 7.430760 AATAGAGGAGCTTGCCCTATATAAG 57.569 40.000 7.35 0.00 37.26 1.73
211 216 7.814693 AAATAGAGGAGCTTGCCCTATATAA 57.185 36.000 7.35 0.00 37.26 0.98
212 217 7.680310 AGAAAATAGAGGAGCTTGCCCTATATA 59.320 37.037 7.35 0.00 37.26 0.86
213 218 6.503570 AGAAAATAGAGGAGCTTGCCCTATAT 59.496 38.462 2.09 2.09 39.22 0.86
214 219 5.846714 AGAAAATAGAGGAGCTTGCCCTATA 59.153 40.000 0.00 0.00 33.36 1.31
215 220 4.662650 AGAAAATAGAGGAGCTTGCCCTAT 59.337 41.667 0.00 0.00 33.36 2.57
216 221 4.040755 AGAAAATAGAGGAGCTTGCCCTA 58.959 43.478 0.00 0.00 33.36 3.53
217 222 2.849318 AGAAAATAGAGGAGCTTGCCCT 59.151 45.455 0.00 0.00 36.57 5.19
218 223 3.210227 GAGAAAATAGAGGAGCTTGCCC 58.790 50.000 0.00 0.00 0.00 5.36
219 224 3.878778 TGAGAAAATAGAGGAGCTTGCC 58.121 45.455 0.00 0.00 0.00 4.52
220 225 4.880696 ACATGAGAAAATAGAGGAGCTTGC 59.119 41.667 0.00 0.00 0.00 4.01
221 226 6.111382 TGACATGAGAAAATAGAGGAGCTTG 58.889 40.000 0.00 0.00 0.00 4.01
222 227 6.305272 TGACATGAGAAAATAGAGGAGCTT 57.695 37.500 0.00 0.00 0.00 3.74
223 228 5.946942 TGACATGAGAAAATAGAGGAGCT 57.053 39.130 0.00 0.00 0.00 4.09
224 229 7.565323 AATTGACATGAGAAAATAGAGGAGC 57.435 36.000 0.00 0.00 0.00 4.70
225 230 9.829507 ACTAATTGACATGAGAAAATAGAGGAG 57.170 33.333 0.00 0.00 0.00 3.69
226 231 9.823647 GACTAATTGACATGAGAAAATAGAGGA 57.176 33.333 0.00 0.00 0.00 3.71
227 232 9.605275 TGACTAATTGACATGAGAAAATAGAGG 57.395 33.333 0.00 0.00 0.00 3.69
229 234 9.605275 CCTGACTAATTGACATGAGAAAATAGA 57.395 33.333 0.00 0.00 0.00 1.98
230 235 9.388506 ACCTGACTAATTGACATGAGAAAATAG 57.611 33.333 0.00 0.49 0.00 1.73
231 236 9.166173 CACCTGACTAATTGACATGAGAAAATA 57.834 33.333 0.00 0.00 0.00 1.40
232 237 7.362401 GCACCTGACTAATTGACATGAGAAAAT 60.362 37.037 0.00 0.00 0.00 1.82
233 238 6.072508 GCACCTGACTAATTGACATGAGAAAA 60.073 38.462 0.00 0.00 0.00 2.29
234 239 5.412594 GCACCTGACTAATTGACATGAGAAA 59.587 40.000 0.00 0.00 0.00 2.52
235 240 4.937620 GCACCTGACTAATTGACATGAGAA 59.062 41.667 0.00 0.00 0.00 2.87
236 241 4.020307 TGCACCTGACTAATTGACATGAGA 60.020 41.667 0.00 0.00 0.00 3.27
237 242 4.256110 TGCACCTGACTAATTGACATGAG 58.744 43.478 0.00 0.00 0.00 2.90
238 243 4.284829 TGCACCTGACTAATTGACATGA 57.715 40.909 0.00 0.00 0.00 3.07
239 244 5.356190 AGATTGCACCTGACTAATTGACATG 59.644 40.000 0.00 0.00 0.00 3.21
240 245 5.503927 AGATTGCACCTGACTAATTGACAT 58.496 37.500 0.00 0.00 0.00 3.06
241 246 4.910195 AGATTGCACCTGACTAATTGACA 58.090 39.130 0.00 0.00 0.00 3.58
242 247 5.181748 AGAGATTGCACCTGACTAATTGAC 58.818 41.667 0.00 0.00 0.00 3.18
243 248 5.426689 AGAGATTGCACCTGACTAATTGA 57.573 39.130 0.00 0.00 0.00 2.57
244 249 6.149973 TGAAAGAGATTGCACCTGACTAATTG 59.850 38.462 0.00 0.00 0.00 2.32
245 250 6.240894 TGAAAGAGATTGCACCTGACTAATT 58.759 36.000 0.00 0.00 0.00 1.40
246 251 5.809001 TGAAAGAGATTGCACCTGACTAAT 58.191 37.500 0.00 0.00 0.00 1.73
247 252 5.227569 TGAAAGAGATTGCACCTGACTAA 57.772 39.130 0.00 0.00 0.00 2.24
248 253 4.890158 TGAAAGAGATTGCACCTGACTA 57.110 40.909 0.00 0.00 0.00 2.59
249 254 3.777106 TGAAAGAGATTGCACCTGACT 57.223 42.857 0.00 0.00 0.00 3.41
250 255 4.836125 TTTGAAAGAGATTGCACCTGAC 57.164 40.909 0.00 0.00 0.00 3.51
251 256 6.409524 AATTTTGAAAGAGATTGCACCTGA 57.590 33.333 0.00 0.00 0.00 3.86
252 257 6.480981 ACAAATTTTGAAAGAGATTGCACCTG 59.519 34.615 15.81 0.00 0.00 4.00
253 258 6.480981 CACAAATTTTGAAAGAGATTGCACCT 59.519 34.615 15.81 0.00 0.00 4.00
254 259 6.479660 TCACAAATTTTGAAAGAGATTGCACC 59.520 34.615 15.81 0.00 0.00 5.01
255 260 7.467557 TCACAAATTTTGAAAGAGATTGCAC 57.532 32.000 15.81 0.00 0.00 4.57
256 261 8.489990 TTTCACAAATTTTGAAAGAGATTGCA 57.510 26.923 15.81 0.00 37.91 4.08
257 262 9.940166 AATTTCACAAATTTTGAAAGAGATTGC 57.060 25.926 21.76 0.00 44.17 3.56
271 276 9.176460 ACATGTGGAAAGAAAATTTCACAAATT 57.824 25.926 8.55 0.00 42.62 1.82
272 277 8.614346 CACATGTGGAAAGAAAATTTCACAAAT 58.386 29.630 18.51 0.10 0.00 2.32
273 278 7.605691 ACACATGTGGAAAGAAAATTTCACAAA 59.394 29.630 28.64 0.00 34.19 2.83
274 279 7.102346 ACACATGTGGAAAGAAAATTTCACAA 58.898 30.769 28.64 0.00 34.19 3.33
275 280 6.638610 ACACATGTGGAAAGAAAATTTCACA 58.361 32.000 28.64 9.69 34.19 3.58
276 281 7.492344 AGAACACATGTGGAAAGAAAATTTCAC 59.508 33.333 28.64 0.00 34.19 3.18
277 282 7.555087 AGAACACATGTGGAAAGAAAATTTCA 58.445 30.769 28.64 0.00 34.19 2.69
278 283 8.424274 AAGAACACATGTGGAAAGAAAATTTC 57.576 30.769 28.64 17.83 34.19 2.17
279 284 8.791327 AAAGAACACATGTGGAAAGAAAATTT 57.209 26.923 28.64 10.43 34.19 1.82
280 285 9.883142 TTAAAGAACACATGTGGAAAGAAAATT 57.117 25.926 28.64 11.15 34.19 1.82
282 287 9.883142 AATTAAAGAACACATGTGGAAAGAAAA 57.117 25.926 28.64 14.61 34.19 2.29
283 288 9.883142 AAATTAAAGAACACATGTGGAAAGAAA 57.117 25.926 28.64 15.96 34.19 2.52
284 289 9.528018 GAAATTAAAGAACACATGTGGAAAGAA 57.472 29.630 28.64 15.36 34.19 2.52
285 290 8.141268 GGAAATTAAAGAACACATGTGGAAAGA 58.859 33.333 28.64 9.49 34.19 2.52
286 291 7.114811 CGGAAATTAAAGAACACATGTGGAAAG 59.885 37.037 28.64 4.63 34.19 2.62
287 292 6.920758 CGGAAATTAAAGAACACATGTGGAAA 59.079 34.615 28.64 13.40 34.19 3.13
288 293 6.039941 ACGGAAATTAAAGAACACATGTGGAA 59.960 34.615 28.64 12.94 34.19 3.53
289 294 5.533154 ACGGAAATTAAAGAACACATGTGGA 59.467 36.000 28.64 6.83 34.19 4.02
290 295 5.768317 ACGGAAATTAAAGAACACATGTGG 58.232 37.500 28.64 11.73 34.19 4.17
291 296 6.799925 GGTACGGAAATTAAAGAACACATGTG 59.200 38.462 24.25 24.25 0.00 3.21
292 297 6.487331 TGGTACGGAAATTAAAGAACACATGT 59.513 34.615 0.00 0.00 0.00 3.21
293 298 6.904498 TGGTACGGAAATTAAAGAACACATG 58.096 36.000 0.00 0.00 0.00 3.21
294 299 7.513371 TTGGTACGGAAATTAAAGAACACAT 57.487 32.000 0.00 0.00 0.00 3.21
295 300 6.939132 TTGGTACGGAAATTAAAGAACACA 57.061 33.333 0.00 0.00 0.00 3.72
296 301 8.533965 GTTTTTGGTACGGAAATTAAAGAACAC 58.466 33.333 0.00 0.00 0.00 3.32
297 302 8.468399 AGTTTTTGGTACGGAAATTAAAGAACA 58.532 29.630 0.00 0.00 0.00 3.18
298 303 8.861033 AGTTTTTGGTACGGAAATTAAAGAAC 57.139 30.769 0.00 0.00 0.00 3.01
305 310 8.016801 CGTTGTATAGTTTTTGGTACGGAAATT 58.983 33.333 0.00 0.00 0.00 1.82
306 311 7.361116 CCGTTGTATAGTTTTTGGTACGGAAAT 60.361 37.037 0.00 0.00 46.44 2.17
307 312 6.073331 CCGTTGTATAGTTTTTGGTACGGAAA 60.073 38.462 0.00 0.00 46.44 3.13
308 313 5.407995 CCGTTGTATAGTTTTTGGTACGGAA 59.592 40.000 0.00 0.00 46.44 4.30
309 314 4.928615 CCGTTGTATAGTTTTTGGTACGGA 59.071 41.667 0.00 0.00 46.44 4.69
310 315 4.928615 TCCGTTGTATAGTTTTTGGTACGG 59.071 41.667 0.00 0.00 45.28 4.02
311 316 5.062558 CCTCCGTTGTATAGTTTTTGGTACG 59.937 44.000 0.00 0.00 0.00 3.67
312 317 5.352293 CCCTCCGTTGTATAGTTTTTGGTAC 59.648 44.000 0.00 0.00 0.00 3.34
313 318 5.248020 TCCCTCCGTTGTATAGTTTTTGGTA 59.752 40.000 0.00 0.00 0.00 3.25
314 319 4.041938 TCCCTCCGTTGTATAGTTTTTGGT 59.958 41.667 0.00 0.00 0.00 3.67
315 320 4.581868 TCCCTCCGTTGTATAGTTTTTGG 58.418 43.478 0.00 0.00 0.00 3.28
316 321 5.243207 ACTCCCTCCGTTGTATAGTTTTTG 58.757 41.667 0.00 0.00 0.00 2.44
317 322 5.494390 ACTCCCTCCGTTGTATAGTTTTT 57.506 39.130 0.00 0.00 0.00 1.94
318 323 5.954150 TCTACTCCCTCCGTTGTATAGTTTT 59.046 40.000 0.00 0.00 0.00 2.43
319 324 5.513233 TCTACTCCCTCCGTTGTATAGTTT 58.487 41.667 0.00 0.00 0.00 2.66
320 325 5.121380 TCTACTCCCTCCGTTGTATAGTT 57.879 43.478 0.00 0.00 0.00 2.24
321 326 4.785346 TCTACTCCCTCCGTTGTATAGT 57.215 45.455 0.00 0.00 0.00 2.12
322 327 6.320672 TCTTTTCTACTCCCTCCGTTGTATAG 59.679 42.308 0.00 0.00 0.00 1.31
323 328 6.189859 TCTTTTCTACTCCCTCCGTTGTATA 58.810 40.000 0.00 0.00 0.00 1.47
324 329 5.021458 TCTTTTCTACTCCCTCCGTTGTAT 58.979 41.667 0.00 0.00 0.00 2.29
325 330 4.410099 TCTTTTCTACTCCCTCCGTTGTA 58.590 43.478 0.00 0.00 0.00 2.41
326 331 3.236896 TCTTTTCTACTCCCTCCGTTGT 58.763 45.455 0.00 0.00 0.00 3.32
327 332 3.510360 TCTCTTTTCTACTCCCTCCGTTG 59.490 47.826 0.00 0.00 0.00 4.10
328 333 3.764972 CTCTCTTTTCTACTCCCTCCGTT 59.235 47.826 0.00 0.00 0.00 4.44
329 334 3.010361 TCTCTCTTTTCTACTCCCTCCGT 59.990 47.826 0.00 0.00 0.00 4.69
330 335 3.622630 TCTCTCTTTTCTACTCCCTCCG 58.377 50.000 0.00 0.00 0.00 4.63
331 336 4.862371 TCTCTCTCTTTTCTACTCCCTCC 58.138 47.826 0.00 0.00 0.00 4.30
332 337 5.751586 TCTCTCTCTCTTTTCTACTCCCTC 58.248 45.833 0.00 0.00 0.00 4.30
333 338 5.491078 TCTCTCTCTCTCTTTTCTACTCCCT 59.509 44.000 0.00 0.00 0.00 4.20
334 339 5.751586 TCTCTCTCTCTCTTTTCTACTCCC 58.248 45.833 0.00 0.00 0.00 4.30
335 340 7.148069 CCTTTCTCTCTCTCTCTTTTCTACTCC 60.148 44.444 0.00 0.00 0.00 3.85
336 341 7.628580 GCCTTTCTCTCTCTCTCTTTTCTACTC 60.629 44.444 0.00 0.00 0.00 2.59
337 342 6.152831 GCCTTTCTCTCTCTCTCTTTTCTACT 59.847 42.308 0.00 0.00 0.00 2.57
338 343 6.071616 TGCCTTTCTCTCTCTCTCTTTTCTAC 60.072 42.308 0.00 0.00 0.00 2.59
339 344 6.013379 TGCCTTTCTCTCTCTCTCTTTTCTA 58.987 40.000 0.00 0.00 0.00 2.10
340 345 4.837860 TGCCTTTCTCTCTCTCTCTTTTCT 59.162 41.667 0.00 0.00 0.00 2.52
341 346 5.146010 TGCCTTTCTCTCTCTCTCTTTTC 57.854 43.478 0.00 0.00 0.00 2.29
342 347 5.559148 TTGCCTTTCTCTCTCTCTCTTTT 57.441 39.130 0.00 0.00 0.00 2.27
343 348 5.338300 GGATTGCCTTTCTCTCTCTCTCTTT 60.338 44.000 0.00 0.00 0.00 2.52
344 349 4.162131 GGATTGCCTTTCTCTCTCTCTCTT 59.838 45.833 0.00 0.00 0.00 2.85
345 350 3.706086 GGATTGCCTTTCTCTCTCTCTCT 59.294 47.826 0.00 0.00 0.00 3.10
346 351 3.450457 TGGATTGCCTTTCTCTCTCTCTC 59.550 47.826 0.00 0.00 34.31 3.20
347 352 3.448934 TGGATTGCCTTTCTCTCTCTCT 58.551 45.455 0.00 0.00 34.31 3.10
348 353 3.902881 TGGATTGCCTTTCTCTCTCTC 57.097 47.619 0.00 0.00 34.31 3.20
349 354 4.858965 ATTGGATTGCCTTTCTCTCTCT 57.141 40.909 0.00 0.00 34.31 3.10
350 355 4.337836 GGAATTGGATTGCCTTTCTCTCTC 59.662 45.833 0.00 0.00 34.31 3.20
821 1637 3.426568 GAGTTGCAGTGAGGGCGC 61.427 66.667 0.00 0.00 0.00 6.53
1118 2674 2.125912 CGAACAGGTCGCAGAGGG 60.126 66.667 0.00 0.00 44.14 4.30
1315 2871 2.124983 CCATGTGGTGGCTCTCCG 60.125 66.667 0.00 0.00 42.12 4.63
1346 2902 0.879090 CTTACGCCAACTTCCCCAAC 59.121 55.000 0.00 0.00 0.00 3.77
1362 2918 3.769739 ACATCAACTCTGGTGTGCTTA 57.230 42.857 0.00 0.00 45.49 3.09
1401 2957 4.194640 GCAACAGAGCAGAATATCTTGGA 58.805 43.478 0.00 0.00 0.00 3.53
1690 3253 6.319048 TGAGGAGAAAGAAGGCAGAATAAT 57.681 37.500 0.00 0.00 0.00 1.28
2086 7198 8.020861 TGCAATTCAGAGTAAAATGCAAATTC 57.979 30.769 0.00 0.00 0.00 2.17
2468 9603 4.038642 TGCAAACTAAAATGTGTTCTCCCC 59.961 41.667 0.00 0.00 0.00 4.81
3024 10383 3.282021 GAAGCACTCATCCTGGCAATAA 58.718 45.455 0.00 0.00 0.00 1.40
4140 11569 1.131126 CCAGGCAAACATCTACAAGCG 59.869 52.381 0.00 0.00 0.00 4.68
4349 11778 0.747283 TTCTCCCCGCGAGTCTCTAC 60.747 60.000 8.23 0.00 39.84 2.59
4429 11861 2.356553 GCGACCGCTACCAACACA 60.357 61.111 7.19 0.00 38.26 3.72
4544 11976 7.053498 AGAATATGCTCTCTCTTTTCTTTCCC 58.947 38.462 0.00 0.00 0.00 3.97
4546 11978 8.764287 GCTAGAATATGCTCTCTCTTTTCTTTC 58.236 37.037 0.00 0.00 0.00 2.62
4611 12053 5.531287 ACCTTCATTGAACACTAGTTTCCAC 59.469 40.000 12.35 0.00 38.30 4.02
4626 12069 7.060421 ACCACCACCTATATAAACCTTCATTG 58.940 38.462 0.00 0.00 0.00 2.82
4690 12151 7.338710 TCTATCGGATTCAGGAAAAAGAACAT 58.661 34.615 0.00 0.00 0.00 2.71
4696 12157 6.603201 AGCAAATCTATCGGATTCAGGAAAAA 59.397 34.615 0.00 0.00 43.17 1.94
4756 12218 0.540454 TGAGAGCCCAGAAGCAGATG 59.460 55.000 0.00 0.00 34.23 2.90
4864 12329 6.536447 AGGTTCCGACTTGGTTAAGAAAATA 58.464 36.000 0.00 0.00 39.52 1.40
4865 12330 5.382616 AGGTTCCGACTTGGTTAAGAAAAT 58.617 37.500 0.00 0.00 39.52 1.82
4866 12331 4.784177 AGGTTCCGACTTGGTTAAGAAAA 58.216 39.130 0.00 0.00 39.52 2.29
4868 12333 3.388676 TGAGGTTCCGACTTGGTTAAGAA 59.611 43.478 0.00 0.00 39.52 2.52
4876 14382 0.679505 TCAGGTGAGGTTCCGACTTG 59.320 55.000 0.00 0.00 0.00 3.16
4929 14435 1.222936 CCGGGATCTTCAGCTTGCT 59.777 57.895 0.00 0.00 0.00 3.91
4930 14436 0.678048 AACCGGGATCTTCAGCTTGC 60.678 55.000 6.32 0.00 0.00 4.01
4967 14473 1.632920 CAAGGCCTTCTTCCTCCTCTT 59.367 52.381 17.29 0.00 32.41 2.85
4968 14474 1.284313 CAAGGCCTTCTTCCTCCTCT 58.716 55.000 17.29 0.00 32.41 3.69
4969 14475 0.393673 GCAAGGCCTTCTTCCTCCTC 60.394 60.000 17.29 0.00 32.41 3.71
4971 14477 1.379176 GGCAAGGCCTTCTTCCTCC 60.379 63.158 17.29 6.36 46.69 4.30
5000 14506 1.299926 CGGATGATCGGACCGGAAC 60.300 63.158 15.25 6.50 42.48 3.62
5001 14507 0.826256 ATCGGATGATCGGACCGGAA 60.826 55.000 15.25 0.00 45.61 4.30
5002 14508 0.826256 AATCGGATGATCGGACCGGA 60.826 55.000 15.25 1.20 45.61 5.14
5003 14509 0.388649 GAATCGGATGATCGGACCGG 60.389 60.000 15.25 0.00 45.61 5.28
5004 14510 0.729478 CGAATCGGATGATCGGACCG 60.729 60.000 7.84 7.84 46.71 4.79
5005 14511 0.596577 TCGAATCGGATGATCGGACC 59.403 55.000 4.76 0.39 32.24 4.46
5006 14512 1.687628 GTCGAATCGGATGATCGGAC 58.312 55.000 4.76 5.88 32.24 4.79
5007 14513 0.237498 CGTCGAATCGGATGATCGGA 59.763 55.000 1.76 5.14 32.24 4.55
5008 14514 1.337817 GCGTCGAATCGGATGATCGG 61.338 60.000 1.76 0.00 32.24 4.18
5009 14515 1.337817 GGCGTCGAATCGGATGATCG 61.338 60.000 1.76 5.87 32.24 3.69
5010 14516 0.318699 TGGCGTCGAATCGGATGATC 60.319 55.000 1.76 0.00 32.24 2.92
5011 14517 0.319040 CTGGCGTCGAATCGGATGAT 60.319 55.000 1.76 0.00 35.98 2.45
5012 14518 1.065764 CTGGCGTCGAATCGGATGA 59.934 57.895 1.76 0.00 0.00 2.92
5013 14519 1.951130 CCTGGCGTCGAATCGGATG 60.951 63.158 1.76 0.00 0.00 3.51
5016 14522 1.017177 TTTTCCTGGCGTCGAATCGG 61.017 55.000 1.76 0.00 0.00 4.18
5041 14547 1.569479 GCTCTCCGCACACCTTTGAC 61.569 60.000 0.00 0.00 38.92 3.18
5095 14601 4.824166 GTCGCGGCAGCAGCATTG 62.824 66.667 18.13 1.39 45.49 2.82
5160 14666 2.361610 GTACGTCCCCGACCCAGA 60.362 66.667 0.00 0.00 37.88 3.86
5161 14667 3.818787 CGTACGTCCCCGACCCAG 61.819 72.222 7.22 0.00 37.88 4.45
5229 14826 1.071471 AGCCAGACCGGTTGACAAG 59.929 57.895 9.42 0.00 36.97 3.16
5286 14883 0.103208 GCAGTATCACAGACCTCGGG 59.897 60.000 0.00 0.00 0.00 5.14
5288 14885 1.800655 GCTGCAGTATCACAGACCTCG 60.801 57.143 16.64 0.00 35.90 4.63
5289 14886 1.472376 GGCTGCAGTATCACAGACCTC 60.472 57.143 16.64 0.00 35.80 3.85
5290 14887 0.539051 GGCTGCAGTATCACAGACCT 59.461 55.000 16.64 0.00 35.80 3.85
5291 14888 3.071580 GGCTGCAGTATCACAGACC 57.928 57.895 16.64 0.04 35.80 3.85
5359 14977 1.236616 TTCAGGTTGTGCAGCGATGG 61.237 55.000 1.46 0.00 0.00 3.51
5364 14982 3.057315 ACACATTATTCAGGTTGTGCAGC 60.057 43.478 2.06 0.00 42.45 5.25
5449 15091 3.787001 GTCCTTGCTCTCCGGGGG 61.787 72.222 0.00 0.00 0.00 5.40
5450 15092 2.685380 AGTCCTTGCTCTCCGGGG 60.685 66.667 0.00 0.00 0.00 5.73
5451 15093 1.984570 TCAGTCCTTGCTCTCCGGG 60.985 63.158 0.00 0.00 0.00 5.73
5452 15094 1.216710 GTCAGTCCTTGCTCTCCGG 59.783 63.158 0.00 0.00 0.00 5.14
5453 15095 0.108898 CAGTCAGTCCTTGCTCTCCG 60.109 60.000 0.00 0.00 0.00 4.63
5454 15096 0.390998 GCAGTCAGTCCTTGCTCTCC 60.391 60.000 0.00 0.00 35.05 3.71
5455 15097 0.319728 TGCAGTCAGTCCTTGCTCTC 59.680 55.000 0.00 0.00 38.60 3.20
5456 15098 0.321021 CTGCAGTCAGTCCTTGCTCT 59.679 55.000 5.25 0.00 38.60 4.09
5457 15099 2.838286 CTGCAGTCAGTCCTTGCTC 58.162 57.895 5.25 0.00 38.60 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.