Multiple sequence alignment - TraesCS6D01G301800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G301800 chr6D 100.000 2486 0 0 1 2486 411466405 411468890 0.000000e+00 4591.0
1 TraesCS6D01G301800 chr6D 84.375 128 11 3 2081 2208 411487558 411487676 1.560000e-22 117.0
2 TraesCS6D01G301800 chr6A 89.017 1566 63 45 394 1894 556033659 556035180 0.000000e+00 1838.0
3 TraesCS6D01G301800 chr6A 92.965 199 8 2 2244 2438 556035622 556035818 4.050000e-73 285.0
4 TraesCS6D01G301800 chr6A 88.750 240 9 6 1883 2122 556035267 556035488 6.770000e-71 278.0
5 TraesCS6D01G301800 chr6B 92.037 967 47 19 621 1565 618666356 618667314 0.000000e+00 1332.0
6 TraesCS6D01G301800 chr6B 86.424 523 32 15 1602 2121 618667323 618667809 1.010000e-148 536.0
7 TraesCS6D01G301800 chr6B 92.276 246 13 4 2244 2486 618667946 618668188 6.580000e-91 344.0
8 TraesCS6D01G301800 chr6B 95.000 80 3 1 2320 2399 618859079 618859157 9.340000e-25 124.0
9 TraesCS6D01G301800 chr3D 88.988 336 15 4 1 314 55531516 55531851 1.790000e-106 396.0
10 TraesCS6D01G301800 chr7B 88.197 305 29 2 1 299 570063994 570063691 8.460000e-95 357.0
11 TraesCS6D01G301800 chr7B 88.672 256 19 7 1 248 130600271 130600524 1.120000e-78 303.0
12 TraesCS6D01G301800 chr7B 100.000 30 0 0 1568 1597 382751374 382751345 3.450000e-04 56.5
13 TraesCS6D01G301800 chr7D 86.420 324 28 8 1 315 59559289 59559605 8.520000e-90 340.0
14 TraesCS6D01G301800 chr7A 87.541 305 19 3 1 299 625531407 625531698 3.960000e-88 335.0
15 TraesCS6D01G301800 chrUn 90.157 254 18 2 1 248 57437390 57437642 8.580000e-85 324.0
16 TraesCS6D01G301800 chr1D 88.214 280 22 8 17 287 479061430 479061153 8.580000e-85 324.0
17 TraesCS6D01G301800 chr1D 100.000 30 0 0 1568 1597 19408009 19407980 3.450000e-04 56.5
18 TraesCS6D01G301800 chr4B 85.804 317 26 6 1 299 539944307 539943992 3.990000e-83 318.0
19 TraesCS6D01G301800 chr4B 100.000 29 0 0 1568 1596 119340178 119340150 1.000000e-03 54.7
20 TraesCS6D01G301800 chr5B 84.877 324 23 7 1 299 369164843 369164521 1.120000e-78 303.0
21 TraesCS6D01G301800 chr5B 100.000 30 0 0 1568 1597 21150842 21150871 3.450000e-04 56.5
22 TraesCS6D01G301800 chr5B 100.000 30 0 0 1568 1597 37056764 37056793 3.450000e-04 56.5
23 TraesCS6D01G301800 chr4A 88.627 255 20 5 1 247 740385914 740385661 4.020000e-78 302.0
24 TraesCS6D01G301800 chr2B 83.036 336 33 12 1 313 747102584 747102250 1.460000e-72 283.0
25 TraesCS6D01G301800 chr3B 83.051 295 22 12 41 311 532671366 532671076 2.470000e-60 243.0
26 TraesCS6D01G301800 chr3B 85.185 162 16 3 17 171 755996140 755995980 2.560000e-35 159.0
27 TraesCS6D01G301800 chr4D 100.000 33 0 0 1568 1600 473981984 473981952 7.420000e-06 62.1
28 TraesCS6D01G301800 chr2A 92.105 38 3 0 1558 1595 54956455 54956418 1.000000e-03 54.7
29 TraesCS6D01G301800 chr1A 100.000 29 0 0 1568 1596 203818672 203818700 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G301800 chr6D 411466405 411468890 2485 False 4591.000000 4591 100.000000 1 2486 1 chr6D.!!$F1 2485
1 TraesCS6D01G301800 chr6A 556033659 556035818 2159 False 800.333333 1838 90.244000 394 2438 3 chr6A.!!$F1 2044
2 TraesCS6D01G301800 chr6B 618666356 618668188 1832 False 737.333333 1332 90.245667 621 2486 3 chr6B.!!$F2 1865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 176 0.033504 CCTCCCCACGTTCGGATATG 59.966 60.0 0.89 0.0 0.0 1.78 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2158 2335 1.116308 TCCACGTTCTTCACTGGTCA 58.884 50.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.323843 CGACTCCCCCGTATCGCG 62.324 72.222 0.00 0.00 40.95 5.87
18 19 4.642542 GACTCCCCCGTATCGCGC 62.643 72.222 0.00 0.00 39.71 6.86
25 26 4.858433 CCGTATCGCGCCCGTTCA 62.858 66.667 0.00 0.00 39.71 3.18
26 27 3.320078 CGTATCGCGCCCGTTCAG 61.320 66.667 0.00 0.00 35.54 3.02
27 28 2.202703 GTATCGCGCCCGTTCAGT 60.203 61.111 0.00 0.00 35.54 3.41
28 29 2.202690 TATCGCGCCCGTTCAGTG 60.203 61.111 0.00 0.00 35.54 3.66
29 30 3.709880 TATCGCGCCCGTTCAGTGG 62.710 63.158 0.00 0.00 35.54 4.00
32 33 4.373116 GCGCCCGTTCAGTGGAGA 62.373 66.667 0.00 0.00 0.00 3.71
33 34 2.125912 CGCCCGTTCAGTGGAGAG 60.126 66.667 0.00 0.00 0.00 3.20
34 35 2.266055 GCCCGTTCAGTGGAGAGG 59.734 66.667 0.00 0.00 0.00 3.69
35 36 2.266055 CCCGTTCAGTGGAGAGGC 59.734 66.667 0.00 0.00 0.00 4.70
36 37 2.286523 CCCGTTCAGTGGAGAGGCT 61.287 63.158 0.00 0.00 0.00 4.58
37 38 1.079543 CCGTTCAGTGGAGAGGCTG 60.080 63.158 0.00 0.00 0.00 4.85
38 39 1.079543 CGTTCAGTGGAGAGGCTGG 60.080 63.158 0.00 0.00 33.81 4.85
39 40 1.821061 CGTTCAGTGGAGAGGCTGGT 61.821 60.000 0.00 0.00 33.81 4.00
40 41 0.321122 GTTCAGTGGAGAGGCTGGTG 60.321 60.000 0.00 0.00 33.81 4.17
41 42 0.471780 TTCAGTGGAGAGGCTGGTGA 60.472 55.000 0.00 0.00 33.81 4.02
42 43 0.902048 TCAGTGGAGAGGCTGGTGAG 60.902 60.000 0.00 0.00 33.81 3.51
43 44 1.611851 AGTGGAGAGGCTGGTGAGG 60.612 63.158 0.00 0.00 0.00 3.86
44 45 1.610673 GTGGAGAGGCTGGTGAGGA 60.611 63.158 0.00 0.00 0.00 3.71
45 46 1.610673 TGGAGAGGCTGGTGAGGAC 60.611 63.158 0.00 0.00 0.00 3.85
46 47 2.716017 GGAGAGGCTGGTGAGGACG 61.716 68.421 0.00 0.00 0.00 4.79
47 48 1.679305 GAGAGGCTGGTGAGGACGA 60.679 63.158 0.00 0.00 0.00 4.20
48 49 1.228894 AGAGGCTGGTGAGGACGAA 60.229 57.895 0.00 0.00 0.00 3.85
49 50 1.216710 GAGGCTGGTGAGGACGAAG 59.783 63.158 0.00 0.00 0.00 3.79
50 51 1.228894 AGGCTGGTGAGGACGAAGA 60.229 57.895 0.00 0.00 0.00 2.87
51 52 1.079750 GGCTGGTGAGGACGAAGAC 60.080 63.158 0.00 0.00 0.00 3.01
52 53 1.444553 GCTGGTGAGGACGAAGACG 60.445 63.158 0.00 0.00 45.75 4.18
53 54 1.863662 GCTGGTGAGGACGAAGACGA 61.864 60.000 0.00 0.00 42.66 4.20
54 55 0.596577 CTGGTGAGGACGAAGACGAA 59.403 55.000 0.00 0.00 42.66 3.85
55 56 0.596577 TGGTGAGGACGAAGACGAAG 59.403 55.000 0.00 0.00 42.66 3.79
56 57 0.879765 GGTGAGGACGAAGACGAAGA 59.120 55.000 0.00 0.00 42.66 2.87
57 58 1.473278 GGTGAGGACGAAGACGAAGAT 59.527 52.381 0.00 0.00 42.66 2.40
58 59 2.520979 GTGAGGACGAAGACGAAGATG 58.479 52.381 0.00 0.00 42.66 2.90
59 60 1.472878 TGAGGACGAAGACGAAGATGG 59.527 52.381 0.00 0.00 42.66 3.51
60 61 1.743958 GAGGACGAAGACGAAGATGGA 59.256 52.381 0.00 0.00 42.66 3.41
61 62 2.163815 GAGGACGAAGACGAAGATGGAA 59.836 50.000 0.00 0.00 42.66 3.53
62 63 2.761208 AGGACGAAGACGAAGATGGAAT 59.239 45.455 0.00 0.00 42.66 3.01
63 64 2.860735 GGACGAAGACGAAGATGGAATG 59.139 50.000 0.00 0.00 42.66 2.67
64 65 2.860735 GACGAAGACGAAGATGGAATGG 59.139 50.000 0.00 0.00 42.66 3.16
65 66 2.205074 CGAAGACGAAGATGGAATGGG 58.795 52.381 0.00 0.00 42.66 4.00
66 67 2.565841 GAAGACGAAGATGGAATGGGG 58.434 52.381 0.00 0.00 0.00 4.96
67 68 1.879575 AGACGAAGATGGAATGGGGA 58.120 50.000 0.00 0.00 0.00 4.81
68 69 1.765314 AGACGAAGATGGAATGGGGAG 59.235 52.381 0.00 0.00 0.00 4.30
69 70 1.762957 GACGAAGATGGAATGGGGAGA 59.237 52.381 0.00 0.00 0.00 3.71
70 71 1.765314 ACGAAGATGGAATGGGGAGAG 59.235 52.381 0.00 0.00 0.00 3.20
71 72 2.042464 CGAAGATGGAATGGGGAGAGA 58.958 52.381 0.00 0.00 0.00 3.10
72 73 2.036992 CGAAGATGGAATGGGGAGAGAG 59.963 54.545 0.00 0.00 0.00 3.20
73 74 1.433121 AGATGGAATGGGGAGAGAGC 58.567 55.000 0.00 0.00 0.00 4.09
74 75 1.135094 GATGGAATGGGGAGAGAGCA 58.865 55.000 0.00 0.00 0.00 4.26
75 76 0.842635 ATGGAATGGGGAGAGAGCAC 59.157 55.000 0.00 0.00 0.00 4.40
76 77 1.274703 TGGAATGGGGAGAGAGCACC 61.275 60.000 0.00 0.00 0.00 5.01
77 78 1.144936 GAATGGGGAGAGAGCACCG 59.855 63.158 0.00 0.00 0.00 4.94
78 79 2.932130 GAATGGGGAGAGAGCACCGC 62.932 65.000 0.00 0.00 38.04 5.68
79 80 3.991924 ATGGGGAGAGAGCACCGCT 62.992 63.158 0.00 0.00 43.88 5.52
80 81 4.154347 GGGGAGAGAGCACCGCTG 62.154 72.222 0.00 0.00 39.88 5.18
81 82 3.386237 GGGAGAGAGCACCGCTGT 61.386 66.667 0.00 0.00 39.88 4.40
82 83 2.125753 GGAGAGAGCACCGCTGTG 60.126 66.667 3.57 3.57 45.65 3.66
83 84 2.125753 GAGAGAGCACCGCTGTGG 60.126 66.667 10.45 5.54 42.99 4.17
84 85 3.655810 GAGAGAGCACCGCTGTGGG 62.656 68.421 12.58 1.87 44.64 4.61
94 95 2.044946 GCTGTGGGCGAGGGATTT 60.045 61.111 0.00 0.00 0.00 2.17
95 96 2.115291 GCTGTGGGCGAGGGATTTC 61.115 63.158 0.00 0.00 0.00 2.17
96 97 1.299648 CTGTGGGCGAGGGATTTCA 59.700 57.895 0.00 0.00 0.00 2.69
97 98 0.745845 CTGTGGGCGAGGGATTTCAG 60.746 60.000 0.00 0.00 0.00 3.02
98 99 1.452108 GTGGGCGAGGGATTTCAGG 60.452 63.158 0.00 0.00 0.00 3.86
99 100 2.517166 GGGCGAGGGATTTCAGGC 60.517 66.667 0.00 0.00 0.00 4.85
100 101 2.272146 GGCGAGGGATTTCAGGCA 59.728 61.111 0.00 0.00 0.00 4.75
101 102 2.115291 GGCGAGGGATTTCAGGCAC 61.115 63.158 0.00 0.00 0.00 5.01
102 103 1.377202 GCGAGGGATTTCAGGCACA 60.377 57.895 0.00 0.00 0.00 4.57
103 104 1.372087 GCGAGGGATTTCAGGCACAG 61.372 60.000 0.00 0.00 0.00 3.66
104 105 0.250234 CGAGGGATTTCAGGCACAGA 59.750 55.000 0.00 0.00 0.00 3.41
105 106 1.134280 CGAGGGATTTCAGGCACAGAT 60.134 52.381 0.00 0.00 0.00 2.90
106 107 2.681976 CGAGGGATTTCAGGCACAGATT 60.682 50.000 0.00 0.00 0.00 2.40
107 108 3.359950 GAGGGATTTCAGGCACAGATTT 58.640 45.455 0.00 0.00 0.00 2.17
108 109 3.359950 AGGGATTTCAGGCACAGATTTC 58.640 45.455 0.00 0.00 0.00 2.17
109 110 2.098117 GGGATTTCAGGCACAGATTTCG 59.902 50.000 0.00 0.00 0.00 3.46
110 111 3.009723 GGATTTCAGGCACAGATTTCGA 58.990 45.455 0.00 0.00 0.00 3.71
111 112 3.440173 GGATTTCAGGCACAGATTTCGAA 59.560 43.478 0.00 0.00 0.00 3.71
112 113 4.082787 GGATTTCAGGCACAGATTTCGAAA 60.083 41.667 13.91 13.91 0.00 3.46
113 114 3.896648 TTCAGGCACAGATTTCGAAAC 57.103 42.857 13.81 7.50 0.00 2.78
114 115 2.151202 TCAGGCACAGATTTCGAAACC 58.849 47.619 13.81 2.58 0.00 3.27
115 116 1.135972 CAGGCACAGATTTCGAAACCG 60.136 52.381 13.81 7.09 0.00 4.44
116 117 0.454452 GGCACAGATTTCGAAACCGC 60.454 55.000 13.81 10.93 0.00 5.68
117 118 0.454452 GCACAGATTTCGAAACCGCC 60.454 55.000 13.81 3.19 0.00 6.13
118 119 0.179225 CACAGATTTCGAAACCGCCG 60.179 55.000 13.81 0.07 0.00 6.46
119 120 0.320073 ACAGATTTCGAAACCGCCGA 60.320 50.000 13.81 0.00 0.00 5.54
120 121 0.094730 CAGATTTCGAAACCGCCGAC 59.905 55.000 13.81 0.00 35.61 4.79
121 122 1.017701 AGATTTCGAAACCGCCGACC 61.018 55.000 13.81 0.00 35.61 4.79
122 123 1.974249 GATTTCGAAACCGCCGACCC 61.974 60.000 13.81 0.00 35.61 4.46
123 124 4.685467 TTCGAAACCGCCGACCCC 62.685 66.667 0.00 0.00 35.61 4.95
134 135 4.400251 CGACCCCCACTCCTCCCT 62.400 72.222 0.00 0.00 0.00 4.20
135 136 2.365768 GACCCCCACTCCTCCCTC 60.366 72.222 0.00 0.00 0.00 4.30
136 137 4.026357 ACCCCCACTCCTCCCTCC 62.026 72.222 0.00 0.00 0.00 4.30
137 138 3.700350 CCCCCACTCCTCCCTCCT 61.700 72.222 0.00 0.00 0.00 3.69
138 139 2.041405 CCCCACTCCTCCCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
139 140 2.641746 CCCCACTCCTCCCTCCTCT 61.642 68.421 0.00 0.00 0.00 3.69
140 141 1.297409 CCCCACTCCTCCCTCCTCTA 61.297 65.000 0.00 0.00 0.00 2.43
141 142 0.105913 CCCACTCCTCCCTCCTCTAC 60.106 65.000 0.00 0.00 0.00 2.59
142 143 0.466555 CCACTCCTCCCTCCTCTACG 60.467 65.000 0.00 0.00 0.00 3.51
143 144 0.466555 CACTCCTCCCTCCTCTACGG 60.467 65.000 0.00 0.00 0.00 4.02
144 145 1.529713 CTCCTCCCTCCTCTACGGC 60.530 68.421 0.00 0.00 0.00 5.68
145 146 2.002018 CTCCTCCCTCCTCTACGGCT 62.002 65.000 0.00 0.00 0.00 5.52
146 147 1.075896 CCTCCCTCCTCTACGGCTT 60.076 63.158 0.00 0.00 0.00 4.35
147 148 0.185416 CCTCCCTCCTCTACGGCTTA 59.815 60.000 0.00 0.00 0.00 3.09
148 149 1.320507 CTCCCTCCTCTACGGCTTAC 58.679 60.000 0.00 0.00 0.00 2.34
149 150 0.627451 TCCCTCCTCTACGGCTTACA 59.373 55.000 0.00 0.00 0.00 2.41
150 151 1.217183 TCCCTCCTCTACGGCTTACAT 59.783 52.381 0.00 0.00 0.00 2.29
151 152 1.341531 CCCTCCTCTACGGCTTACATG 59.658 57.143 0.00 0.00 0.00 3.21
152 153 2.032620 CCTCCTCTACGGCTTACATGT 58.967 52.381 2.69 2.69 0.00 3.21
153 154 2.223829 CCTCCTCTACGGCTTACATGTG 60.224 54.545 9.11 0.00 0.00 3.21
154 155 1.754803 TCCTCTACGGCTTACATGTGG 59.245 52.381 9.11 2.29 0.00 4.17
155 156 1.202533 CCTCTACGGCTTACATGTGGG 60.203 57.143 9.11 1.90 0.00 4.61
156 157 0.177141 TCTACGGCTTACATGTGGGC 59.823 55.000 9.11 12.14 0.00 5.36
157 158 0.814010 CTACGGCTTACATGTGGGCC 60.814 60.000 24.77 24.77 41.02 5.80
158 159 1.268992 TACGGCTTACATGTGGGCCT 61.269 55.000 28.58 21.26 42.13 5.19
159 160 1.819632 CGGCTTACATGTGGGCCTC 60.820 63.158 28.58 0.49 42.13 4.70
160 161 1.453928 GGCTTACATGTGGGCCTCC 60.454 63.158 26.31 9.94 41.20 4.30
161 162 1.453928 GCTTACATGTGGGCCTCCC 60.454 63.158 9.11 0.00 45.71 4.30
172 173 3.782443 GCCTCCCCACGTTCGGAT 61.782 66.667 0.89 0.00 0.00 4.18
173 174 2.428925 GCCTCCCCACGTTCGGATA 61.429 63.158 0.89 0.00 0.00 2.59
174 175 1.755393 GCCTCCCCACGTTCGGATAT 61.755 60.000 0.89 0.00 0.00 1.63
175 176 0.033504 CCTCCCCACGTTCGGATATG 59.966 60.000 0.89 0.00 0.00 1.78
176 177 0.033504 CTCCCCACGTTCGGATATGG 59.966 60.000 0.89 0.00 0.00 2.74
177 178 0.397394 TCCCCACGTTCGGATATGGA 60.397 55.000 0.00 0.00 33.80 3.41
178 179 0.249741 CCCCACGTTCGGATATGGAC 60.250 60.000 0.00 0.00 33.80 4.02
179 180 0.462375 CCCACGTTCGGATATGGACA 59.538 55.000 0.00 0.00 33.80 4.02
180 181 1.134640 CCCACGTTCGGATATGGACAA 60.135 52.381 0.00 0.00 33.80 3.18
181 182 2.623535 CCACGTTCGGATATGGACAAA 58.376 47.619 0.00 0.00 33.80 2.83
182 183 2.350498 CCACGTTCGGATATGGACAAAC 59.650 50.000 0.00 0.00 33.80 2.93
183 184 2.350498 CACGTTCGGATATGGACAAACC 59.650 50.000 0.00 0.00 39.54 3.27
184 185 1.591158 CGTTCGGATATGGACAAACCG 59.409 52.381 0.00 0.00 44.09 4.44
185 186 1.329599 GTTCGGATATGGACAAACCGC 59.670 52.381 0.00 0.00 42.73 5.68
186 187 0.179067 TCGGATATGGACAAACCGCC 60.179 55.000 0.00 0.00 42.73 6.13
187 188 1.164041 CGGATATGGACAAACCGCCC 61.164 60.000 0.00 0.00 42.61 6.13
188 189 0.822121 GGATATGGACAAACCGCCCC 60.822 60.000 0.00 0.00 42.61 5.80
189 190 0.822121 GATATGGACAAACCGCCCCC 60.822 60.000 0.00 0.00 42.61 5.40
190 191 1.576368 ATATGGACAAACCGCCCCCA 61.576 55.000 0.00 0.00 42.61 4.96
191 192 1.790635 TATGGACAAACCGCCCCCAA 61.791 55.000 0.00 0.00 42.61 4.12
192 193 3.299977 GGACAAACCGCCCCCAAC 61.300 66.667 0.00 0.00 0.00 3.77
193 194 3.299977 GACAAACCGCCCCCAACC 61.300 66.667 0.00 0.00 0.00 3.77
217 218 4.856801 CGGGGCCAATCCAGACCG 62.857 72.222 4.39 0.79 36.21 4.79
218 219 4.506255 GGGGCCAATCCAGACCGG 62.506 72.222 4.39 0.00 36.21 5.28
219 220 4.506255 GGGCCAATCCAGACCGGG 62.506 72.222 6.32 0.00 36.21 5.73
220 221 3.728373 GGCCAATCCAGACCGGGT 61.728 66.667 6.32 0.00 34.36 5.28
221 222 2.438434 GCCAATCCAGACCGGGTG 60.438 66.667 3.30 2.07 34.36 4.61
222 223 2.272146 CCAATCCAGACCGGGTGG 59.728 66.667 17.19 17.19 42.84 4.61
223 224 2.438434 CAATCCAGACCGGGTGGC 60.438 66.667 18.24 0.00 39.70 5.01
224 225 2.933287 AATCCAGACCGGGTGGCA 60.933 61.111 18.24 9.26 39.70 4.92
225 226 3.268103 AATCCAGACCGGGTGGCAC 62.268 63.158 18.24 9.70 39.70 5.01
228 229 4.704833 CAGACCGGGTGGCACCTG 62.705 72.222 34.09 34.09 44.36 4.00
259 260 4.812476 CGATCGTGCGGCCAGGAA 62.812 66.667 7.03 0.00 39.10 3.36
260 261 2.892425 GATCGTGCGGCCAGGAAG 60.892 66.667 2.24 0.00 39.10 3.46
281 282 3.762247 CCGCCCGGTTCGGTTAGA 61.762 66.667 20.45 0.00 46.80 2.10
282 283 2.497770 CGCCCGGTTCGGTTAGAT 59.502 61.111 0.00 0.00 46.80 1.98
283 284 1.735360 CGCCCGGTTCGGTTAGATA 59.265 57.895 0.00 0.00 46.80 1.98
284 285 0.318445 CGCCCGGTTCGGTTAGATAG 60.318 60.000 0.00 0.00 46.80 2.08
285 286 0.749049 GCCCGGTTCGGTTAGATAGT 59.251 55.000 0.00 0.00 46.80 2.12
286 287 1.537562 GCCCGGTTCGGTTAGATAGTG 60.538 57.143 0.00 0.00 46.80 2.74
287 288 1.537562 CCCGGTTCGGTTAGATAGTGC 60.538 57.143 0.00 0.00 46.80 4.40
288 289 1.474017 CGGTTCGGTTAGATAGTGCG 58.526 55.000 0.00 0.00 0.00 5.34
289 290 1.206523 GGTTCGGTTAGATAGTGCGC 58.793 55.000 0.00 0.00 0.00 6.09
290 291 0.844503 GTTCGGTTAGATAGTGCGCG 59.155 55.000 0.00 0.00 0.00 6.86
291 292 0.452987 TTCGGTTAGATAGTGCGCGT 59.547 50.000 8.43 0.00 0.00 6.01
292 293 0.248336 TCGGTTAGATAGTGCGCGTG 60.248 55.000 8.43 0.00 0.00 5.34
293 294 1.808234 CGGTTAGATAGTGCGCGTGC 61.808 60.000 15.48 15.48 43.20 5.34
303 304 2.255252 GCGCGTGCACTTTGGATT 59.745 55.556 17.66 0.00 42.15 3.01
304 305 1.371635 GCGCGTGCACTTTGGATTT 60.372 52.632 17.66 0.00 42.15 2.17
305 306 0.109964 GCGCGTGCACTTTGGATTTA 60.110 50.000 17.66 0.00 42.15 1.40
306 307 1.882198 CGCGTGCACTTTGGATTTAG 58.118 50.000 16.19 0.00 0.00 1.85
307 308 1.465689 CGCGTGCACTTTGGATTTAGG 60.466 52.381 16.19 0.00 0.00 2.69
308 309 1.810151 GCGTGCACTTTGGATTTAGGA 59.190 47.619 16.19 0.00 0.00 2.94
309 310 2.227865 GCGTGCACTTTGGATTTAGGAA 59.772 45.455 16.19 0.00 0.00 3.36
310 311 3.305064 GCGTGCACTTTGGATTTAGGAAA 60.305 43.478 16.19 0.00 0.00 3.13
311 312 4.794655 GCGTGCACTTTGGATTTAGGAAAA 60.795 41.667 16.19 0.00 0.00 2.29
312 313 5.285651 CGTGCACTTTGGATTTAGGAAAAA 58.714 37.500 16.19 0.00 0.00 1.94
313 314 5.925969 CGTGCACTTTGGATTTAGGAAAAAT 59.074 36.000 16.19 0.00 0.00 1.82
314 315 7.087639 CGTGCACTTTGGATTTAGGAAAAATA 58.912 34.615 16.19 0.00 0.00 1.40
315 316 7.759433 CGTGCACTTTGGATTTAGGAAAAATAT 59.241 33.333 16.19 0.00 0.00 1.28
339 340 6.135819 ACTACCAGTTATTTTGCTAAGGGT 57.864 37.500 0.00 0.00 0.00 4.34
340 341 6.178324 ACTACCAGTTATTTTGCTAAGGGTC 58.822 40.000 0.00 0.00 0.00 4.46
341 342 4.993028 ACCAGTTATTTTGCTAAGGGTCA 58.007 39.130 0.00 0.00 0.00 4.02
342 343 4.765339 ACCAGTTATTTTGCTAAGGGTCAC 59.235 41.667 0.00 0.00 0.00 3.67
343 344 5.010282 CCAGTTATTTTGCTAAGGGTCACT 58.990 41.667 0.00 0.00 0.00 3.41
344 345 5.106157 CCAGTTATTTTGCTAAGGGTCACTG 60.106 44.000 0.00 0.00 0.00 3.66
345 346 5.473504 CAGTTATTTTGCTAAGGGTCACTGT 59.526 40.000 0.00 0.00 0.00 3.55
346 347 5.705905 AGTTATTTTGCTAAGGGTCACTGTC 59.294 40.000 0.00 0.00 0.00 3.51
347 348 3.857157 TTTTGCTAAGGGTCACTGTCT 57.143 42.857 0.00 0.00 0.00 3.41
348 349 2.839486 TTGCTAAGGGTCACTGTCTG 57.161 50.000 0.00 0.00 0.00 3.51
349 350 0.321671 TGCTAAGGGTCACTGTCTGC 59.678 55.000 0.00 0.00 0.00 4.26
350 351 0.321671 GCTAAGGGTCACTGTCTGCA 59.678 55.000 0.00 0.00 0.00 4.41
351 352 1.065854 GCTAAGGGTCACTGTCTGCAT 60.066 52.381 0.00 0.00 0.00 3.96
352 353 2.625737 CTAAGGGTCACTGTCTGCATG 58.374 52.381 0.00 0.00 0.00 4.06
353 354 0.037303 AAGGGTCACTGTCTGCATGG 59.963 55.000 0.00 0.00 0.00 3.66
354 355 0.837691 AGGGTCACTGTCTGCATGGA 60.838 55.000 0.00 0.00 0.00 3.41
355 356 0.254178 GGGTCACTGTCTGCATGGAT 59.746 55.000 0.00 0.00 0.00 3.41
356 357 1.376543 GGTCACTGTCTGCATGGATG 58.623 55.000 0.00 0.00 0.00 3.51
357 358 1.339438 GGTCACTGTCTGCATGGATGT 60.339 52.381 0.00 0.00 0.00 3.06
358 359 2.430465 GTCACTGTCTGCATGGATGTT 58.570 47.619 0.00 0.00 0.00 2.71
359 360 2.417933 GTCACTGTCTGCATGGATGTTC 59.582 50.000 0.00 0.00 0.00 3.18
360 361 2.038820 TCACTGTCTGCATGGATGTTCA 59.961 45.455 0.00 0.00 0.00 3.18
361 362 3.014623 CACTGTCTGCATGGATGTTCAT 58.985 45.455 0.00 0.00 0.00 2.57
362 363 3.442625 CACTGTCTGCATGGATGTTCATT 59.557 43.478 0.00 0.00 0.00 2.57
363 364 4.082408 CACTGTCTGCATGGATGTTCATTT 60.082 41.667 0.00 0.00 0.00 2.32
364 365 4.525487 ACTGTCTGCATGGATGTTCATTTT 59.475 37.500 0.00 0.00 0.00 1.82
365 366 5.011329 ACTGTCTGCATGGATGTTCATTTTT 59.989 36.000 0.00 0.00 0.00 1.94
383 384 1.324383 TTTTTCCCTTGGACCTTCGC 58.676 50.000 0.00 0.00 0.00 4.70
384 385 0.183971 TTTTCCCTTGGACCTTCGCA 59.816 50.000 0.00 0.00 0.00 5.10
385 386 0.404040 TTTCCCTTGGACCTTCGCAT 59.596 50.000 0.00 0.00 0.00 4.73
386 387 0.322456 TTCCCTTGGACCTTCGCATG 60.322 55.000 0.00 0.00 0.00 4.06
387 388 1.002134 CCCTTGGACCTTCGCATGT 60.002 57.895 0.00 0.00 0.00 3.21
388 389 1.308069 CCCTTGGACCTTCGCATGTG 61.308 60.000 0.00 0.00 0.00 3.21
389 390 1.503542 CTTGGACCTTCGCATGTGC 59.496 57.895 0.00 0.00 37.78 4.57
390 391 0.957395 CTTGGACCTTCGCATGTGCT 60.957 55.000 0.00 0.00 39.32 4.40
391 392 0.537143 TTGGACCTTCGCATGTGCTT 60.537 50.000 0.00 0.00 39.32 3.91
392 393 0.537143 TGGACCTTCGCATGTGCTTT 60.537 50.000 0.00 0.00 39.32 3.51
426 427 1.517694 CCTTCGCATGTGCATTGGC 60.518 57.895 0.00 0.00 42.21 4.52
456 462 8.912614 ATCCCCTCTATACTTATCCGTATTTT 57.087 34.615 0.00 0.00 32.63 1.82
457 463 8.731591 TCCCCTCTATACTTATCCGTATTTTT 57.268 34.615 0.00 0.00 32.63 1.94
510 516 6.875972 TGAAGTTTTAGAGAGAATAGGGCT 57.124 37.500 0.00 0.00 0.00 5.19
513 519 4.342665 AGTTTTAGAGAGAATAGGGCTCGG 59.657 45.833 0.00 0.00 37.46 4.63
598 607 0.821517 ACGGTGCATAACGATCTCCA 59.178 50.000 14.00 0.00 0.00 3.86
854 863 1.022903 AGTCTCCCTCCCTCTCCATT 58.977 55.000 0.00 0.00 0.00 3.16
863 872 3.007398 CCTCCCTCTCCATTATTCCTTCG 59.993 52.174 0.00 0.00 0.00 3.79
934 960 2.049433 ACGTCGAGGAAACAGCCG 60.049 61.111 12.85 0.00 0.00 5.52
936 962 2.357034 GTCGAGGAAACAGCCGCA 60.357 61.111 0.00 0.00 0.00 5.69
985 1018 1.912110 GTAGAGTTCATGTGACGCGAC 59.088 52.381 15.93 7.62 0.00 5.19
986 1019 0.729478 AGAGTTCATGTGACGCGACG 60.729 55.000 15.93 0.00 0.00 5.12
987 1020 2.093983 GTTCATGTGACGCGACGC 59.906 61.111 15.93 15.40 0.00 5.19
1300 1354 2.733671 TACTCGTCGTCGTCGCTGG 61.734 63.158 7.01 3.09 38.33 4.85
1301 1355 3.785499 CTCGTCGTCGTCGCTGGA 61.785 66.667 7.01 0.00 38.33 3.86
1440 1494 1.686052 CTGCTCATCTCCTACCAGTCC 59.314 57.143 0.00 0.00 0.00 3.85
1464 1518 2.298661 CCAGTACTGGTGGTCCCCC 61.299 68.421 30.57 0.00 45.53 5.40
1529 1597 1.846541 CGCAGCTAGAAGCCTAGAAC 58.153 55.000 0.00 0.00 43.77 3.01
1530 1598 1.407258 CGCAGCTAGAAGCCTAGAACT 59.593 52.381 0.00 0.00 43.77 3.01
1531 1599 2.619177 CGCAGCTAGAAGCCTAGAACTA 59.381 50.000 0.00 0.00 43.77 2.24
1532 1600 3.304391 CGCAGCTAGAAGCCTAGAACTAG 60.304 52.174 0.00 0.00 43.77 2.57
1533 1601 3.634910 GCAGCTAGAAGCCTAGAACTAGT 59.365 47.826 0.00 0.00 43.77 2.57
1534 1602 4.822896 GCAGCTAGAAGCCTAGAACTAGTA 59.177 45.833 0.00 0.00 43.77 1.82
1535 1603 5.475564 GCAGCTAGAAGCCTAGAACTAGTAT 59.524 44.000 0.00 0.00 43.77 2.12
1557 1625 0.951525 CATTTGGTCACGTACGGGCA 60.952 55.000 21.06 7.00 0.00 5.36
1565 1633 1.520787 ACGTACGGGCAATGCTAGC 60.521 57.895 21.06 8.10 0.00 3.42
1566 1634 1.227263 CGTACGGGCAATGCTAGCT 60.227 57.895 17.23 0.00 0.00 3.32
1567 1635 1.215655 CGTACGGGCAATGCTAGCTC 61.216 60.000 17.23 2.43 0.00 4.09
1568 1636 0.105039 GTACGGGCAATGCTAGCTCT 59.895 55.000 17.23 0.00 0.00 4.09
1569 1637 0.389391 TACGGGCAATGCTAGCTCTC 59.611 55.000 17.23 1.62 0.00 3.20
1583 1651 9.487790 AATGCTAGCTCTCTTATATTTCTTCAC 57.512 33.333 17.23 0.00 0.00 3.18
1586 1654 8.356657 GCTAGCTCTCTTATATTTCTTCACAGA 58.643 37.037 7.70 0.00 0.00 3.41
1588 1656 7.725251 AGCTCTCTTATATTTCTTCACAGAGG 58.275 38.462 0.00 0.00 0.00 3.69
1590 1658 7.201956 GCTCTCTTATATTTCTTCACAGAGGGA 60.202 40.741 0.00 0.00 30.12 4.20
1591 1659 8.243961 TCTCTTATATTTCTTCACAGAGGGAG 57.756 38.462 0.00 0.00 0.00 4.30
1592 1660 7.841729 TCTCTTATATTTCTTCACAGAGGGAGT 59.158 37.037 0.00 0.00 0.00 3.85
1593 1661 9.137459 CTCTTATATTTCTTCACAGAGGGAGTA 57.863 37.037 0.00 0.00 0.00 2.59
1594 1662 8.915036 TCTTATATTTCTTCACAGAGGGAGTAC 58.085 37.037 0.00 0.00 0.00 2.73
1595 1663 8.840200 TTATATTTCTTCACAGAGGGAGTACT 57.160 34.615 0.00 0.00 0.00 2.73
1596 1664 9.931698 TTATATTTCTTCACAGAGGGAGTACTA 57.068 33.333 0.00 0.00 0.00 1.82
1597 1665 5.979288 TTTCTTCACAGAGGGAGTACTAC 57.021 43.478 0.00 0.00 0.00 2.73
1598 1666 4.931027 TCTTCACAGAGGGAGTACTACT 57.069 45.455 4.77 1.85 0.00 2.57
1599 1667 4.590918 TCTTCACAGAGGGAGTACTACTG 58.409 47.826 4.77 10.44 35.14 2.74
1655 1723 3.255642 GCAGGATTTTGCTGTCTAAACCA 59.744 43.478 0.00 0.00 38.17 3.67
1658 1726 5.183713 CAGGATTTTGCTGTCTAAACCATCA 59.816 40.000 0.00 0.00 30.66 3.07
1659 1727 5.416952 AGGATTTTGCTGTCTAAACCATCAG 59.583 40.000 0.00 0.00 0.00 2.90
1768 1848 8.922058 AATAAAGAGCAGTATTCTTGCATTTG 57.078 30.769 0.00 0.00 35.20 2.32
1819 1899 1.879380 TGACAAATTGCTCTCCAACCG 59.121 47.619 0.00 0.00 35.99 4.44
1851 1931 7.551974 ACACTACTCGTACTGTACTGTATCATT 59.448 37.037 14.73 4.67 0.00 2.57
1853 1933 8.396390 ACTACTCGTACTGTACTGTATCATTTG 58.604 37.037 14.73 8.05 0.00 2.32
1907 2084 4.223923 CCCTCCTTCTCTGAACATACACTT 59.776 45.833 0.00 0.00 0.00 3.16
1929 2106 8.557029 CACTTAGTCTTTTAAAACCACGAATCT 58.443 33.333 0.00 0.00 0.00 2.40
1956 2133 5.515270 GCAAAGAATATAAGAACCAAACCGC 59.485 40.000 0.00 0.00 0.00 5.68
1974 2151 5.982890 ACCGCTTAACCAAAGTACTACTA 57.017 39.130 0.00 0.00 37.53 1.82
1975 2152 5.714047 ACCGCTTAACCAAAGTACTACTAC 58.286 41.667 0.00 0.00 37.53 2.73
1976 2153 5.478332 ACCGCTTAACCAAAGTACTACTACT 59.522 40.000 0.00 0.00 37.53 2.57
1977 2154 6.015095 ACCGCTTAACCAAAGTACTACTACTT 60.015 38.462 0.00 0.00 43.87 2.24
1979 2156 7.062722 CCGCTTAACCAAAGTACTACTACTTTC 59.937 40.741 0.00 0.00 46.16 2.62
1981 2158 9.433153 GCTTAACCAAAGTACTACTACTTTCAT 57.567 33.333 0.00 0.00 46.16 2.57
1985 2162 8.191534 ACCAAAGTACTACTACTTTCATCAGT 57.808 34.615 0.00 0.00 46.16 3.41
1986 2163 9.305555 ACCAAAGTACTACTACTTTCATCAGTA 57.694 33.333 0.00 0.00 46.16 2.74
1987 2164 9.570488 CCAAAGTACTACTACTTTCATCAGTAC 57.430 37.037 0.00 0.00 46.16 2.73
2087 2264 1.067212 CCGATCACGCCTAGCTTTAGT 59.933 52.381 0.00 0.00 38.29 2.24
2122 2299 6.622896 GCTGCCAGTTAACTAATCGAAATTGT 60.623 38.462 8.04 0.00 0.00 2.71
2123 2300 6.607689 TGCCAGTTAACTAATCGAAATTGTG 58.392 36.000 8.04 0.00 0.00 3.33
2126 2303 5.732647 CAGTTAACTAATCGAAATTGTGCCG 59.267 40.000 8.04 0.00 0.00 5.69
2127 2304 2.825086 ACTAATCGAAATTGTGCCGC 57.175 45.000 0.00 0.00 0.00 6.53
2128 2305 2.080693 ACTAATCGAAATTGTGCCGCA 58.919 42.857 0.00 0.00 0.00 5.69
2129 2306 2.486203 ACTAATCGAAATTGTGCCGCAA 59.514 40.909 0.00 0.00 41.89 4.85
2130 2307 2.430546 AATCGAAATTGTGCCGCAAA 57.569 40.000 0.00 0.00 40.91 3.68
2131 2308 1.981254 ATCGAAATTGTGCCGCAAAG 58.019 45.000 0.00 0.00 40.91 2.77
2132 2309 0.947960 TCGAAATTGTGCCGCAAAGA 59.052 45.000 0.00 0.00 40.91 2.52
2133 2310 1.335182 TCGAAATTGTGCCGCAAAGAA 59.665 42.857 0.00 0.00 40.91 2.52
2134 2311 2.123342 CGAAATTGTGCCGCAAAGAAA 58.877 42.857 0.00 0.00 40.91 2.52
2135 2312 2.537625 CGAAATTGTGCCGCAAAGAAAA 59.462 40.909 0.00 0.00 40.91 2.29
2136 2313 3.000724 CGAAATTGTGCCGCAAAGAAAAA 59.999 39.130 0.00 0.00 40.91 1.94
2187 2364 1.092921 AGAACGTGGAAACGCTGCAA 61.093 50.000 0.00 0.00 39.21 4.08
2201 2378 3.627577 ACGCTGCAAGAAAGAAAGAAAGA 59.372 39.130 0.00 0.00 34.07 2.52
2204 2381 5.172771 CGCTGCAAGAAAGAAAGAAAGAAAG 59.827 40.000 0.00 0.00 34.07 2.62
2205 2382 6.268566 GCTGCAAGAAAGAAAGAAAGAAAGA 58.731 36.000 0.00 0.00 34.07 2.52
2206 2383 6.753744 GCTGCAAGAAAGAAAGAAAGAAAGAA 59.246 34.615 0.00 0.00 34.07 2.52
2207 2384 7.276438 GCTGCAAGAAAGAAAGAAAGAAAGAAA 59.724 33.333 0.00 0.00 34.07 2.52
2208 2385 8.693542 TGCAAGAAAGAAAGAAAGAAAGAAAG 57.306 30.769 0.00 0.00 0.00 2.62
2209 2386 8.522830 TGCAAGAAAGAAAGAAAGAAAGAAAGA 58.477 29.630 0.00 0.00 0.00 2.52
2210 2387 9.358872 GCAAGAAAGAAAGAAAGAAAGAAAGAA 57.641 29.630 0.00 0.00 0.00 2.52
2212 2389 9.561270 AAGAAAGAAAGAAAGAAAGAAAGAACG 57.439 29.630 0.00 0.00 0.00 3.95
2213 2390 8.947115 AGAAAGAAAGAAAGAAAGAAAGAACGA 58.053 29.630 0.00 0.00 0.00 3.85
2214 2391 9.556030 GAAAGAAAGAAAGAAAGAAAGAACGAA 57.444 29.630 0.00 0.00 0.00 3.85
2215 2392 8.897457 AAGAAAGAAAGAAAGAAAGAACGAAC 57.103 30.769 0.00 0.00 0.00 3.95
2219 2396 6.476051 AGAAAGAAAGAAAGAACGAACGAAC 58.524 36.000 0.14 0.00 0.00 3.95
2241 2425 5.003804 ACGAAAGAGAAATGCAATACAGGT 58.996 37.500 0.00 0.00 0.00 4.00
2242 2426 6.170506 ACGAAAGAGAAATGCAATACAGGTA 58.829 36.000 0.00 0.00 0.00 3.08
2401 2647 2.110721 ACATTTCTTGGCTTCCCTTCCT 59.889 45.455 0.00 0.00 0.00 3.36
2402 2648 3.333680 ACATTTCTTGGCTTCCCTTCCTA 59.666 43.478 0.00 0.00 0.00 2.94
2403 2649 3.721087 TTTCTTGGCTTCCCTTCCTAG 57.279 47.619 0.00 0.00 0.00 3.02
2405 2651 0.462759 CTTGGCTTCCCTTCCTAGCG 60.463 60.000 0.00 0.00 35.77 4.26
2406 2652 0.907704 TTGGCTTCCCTTCCTAGCGA 60.908 55.000 0.00 0.00 35.77 4.93
2407 2653 1.330655 TGGCTTCCCTTCCTAGCGAG 61.331 60.000 0.00 0.00 35.77 5.03
2436 2682 1.137282 GGAATCTCACGGAGGAGTTCC 59.863 57.143 13.69 13.69 43.04 3.62
2450 2696 2.970324 TTCCTGTTGGCGTCGCAC 60.970 61.111 20.50 10.20 0.00 5.34
2471 2720 1.405661 GGGCTCGATTTCTCGGAGTTT 60.406 52.381 4.69 0.00 45.10 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.323843 CGCGATACGGGGGAGTCG 62.324 72.222 0.00 0.00 38.44 4.18
1 2 4.642542 GCGCGATACGGGGGAGTC 62.643 72.222 12.10 0.00 43.93 3.36
8 9 4.858433 TGAACGGGCGCGATACGG 62.858 66.667 30.98 6.07 43.93 4.02
10 11 2.202703 ACTGAACGGGCGCGATAC 60.203 61.111 30.98 18.81 0.00 2.24
11 12 2.202690 CACTGAACGGGCGCGATA 60.203 61.111 30.98 13.65 0.00 2.92
15 16 4.373116 TCTCCACTGAACGGGCGC 62.373 66.667 0.00 0.00 0.00 6.53
16 17 2.125912 CTCTCCACTGAACGGGCG 60.126 66.667 0.00 0.00 0.00 6.13
17 18 2.266055 CCTCTCCACTGAACGGGC 59.734 66.667 0.00 0.00 0.00 6.13
18 19 2.266055 GCCTCTCCACTGAACGGG 59.734 66.667 0.00 0.00 0.00 5.28
19 20 1.079543 CAGCCTCTCCACTGAACGG 60.080 63.158 0.00 0.00 35.90 4.44
20 21 1.079543 CCAGCCTCTCCACTGAACG 60.080 63.158 0.00 0.00 35.90 3.95
21 22 0.321122 CACCAGCCTCTCCACTGAAC 60.321 60.000 0.00 0.00 35.90 3.18
22 23 0.471780 TCACCAGCCTCTCCACTGAA 60.472 55.000 0.00 0.00 35.90 3.02
23 24 0.902048 CTCACCAGCCTCTCCACTGA 60.902 60.000 0.00 0.00 35.90 3.41
24 25 1.595882 CTCACCAGCCTCTCCACTG 59.404 63.158 0.00 0.00 0.00 3.66
25 26 1.611851 CCTCACCAGCCTCTCCACT 60.612 63.158 0.00 0.00 0.00 4.00
26 27 1.610673 TCCTCACCAGCCTCTCCAC 60.611 63.158 0.00 0.00 0.00 4.02
27 28 1.610673 GTCCTCACCAGCCTCTCCA 60.611 63.158 0.00 0.00 0.00 3.86
28 29 2.716017 CGTCCTCACCAGCCTCTCC 61.716 68.421 0.00 0.00 0.00 3.71
29 30 1.251527 TTCGTCCTCACCAGCCTCTC 61.252 60.000 0.00 0.00 0.00 3.20
30 31 1.228894 TTCGTCCTCACCAGCCTCT 60.229 57.895 0.00 0.00 0.00 3.69
31 32 1.216710 CTTCGTCCTCACCAGCCTC 59.783 63.158 0.00 0.00 0.00 4.70
32 33 1.228894 TCTTCGTCCTCACCAGCCT 60.229 57.895 0.00 0.00 0.00 4.58
33 34 1.079750 GTCTTCGTCCTCACCAGCC 60.080 63.158 0.00 0.00 0.00 4.85
34 35 1.444553 CGTCTTCGTCCTCACCAGC 60.445 63.158 0.00 0.00 0.00 4.85
35 36 0.596577 TTCGTCTTCGTCCTCACCAG 59.403 55.000 0.00 0.00 38.33 4.00
36 37 0.596577 CTTCGTCTTCGTCCTCACCA 59.403 55.000 0.00 0.00 38.33 4.17
37 38 0.879765 TCTTCGTCTTCGTCCTCACC 59.120 55.000 0.00 0.00 38.33 4.02
38 39 2.520979 CATCTTCGTCTTCGTCCTCAC 58.479 52.381 0.00 0.00 38.33 3.51
39 40 1.472878 CCATCTTCGTCTTCGTCCTCA 59.527 52.381 0.00 0.00 38.33 3.86
40 41 1.743958 TCCATCTTCGTCTTCGTCCTC 59.256 52.381 0.00 0.00 38.33 3.71
41 42 1.835494 TCCATCTTCGTCTTCGTCCT 58.165 50.000 0.00 0.00 38.33 3.85
42 43 2.649331 TTCCATCTTCGTCTTCGTCC 57.351 50.000 0.00 0.00 38.33 4.79
43 44 2.860735 CCATTCCATCTTCGTCTTCGTC 59.139 50.000 0.00 0.00 38.33 4.20
44 45 2.418746 CCCATTCCATCTTCGTCTTCGT 60.419 50.000 0.00 0.00 38.33 3.85
45 46 2.205074 CCCATTCCATCTTCGTCTTCG 58.795 52.381 0.00 0.00 38.55 3.79
46 47 2.170607 TCCCCATTCCATCTTCGTCTTC 59.829 50.000 0.00 0.00 0.00 2.87
47 48 2.171448 CTCCCCATTCCATCTTCGTCTT 59.829 50.000 0.00 0.00 0.00 3.01
48 49 1.765314 CTCCCCATTCCATCTTCGTCT 59.235 52.381 0.00 0.00 0.00 4.18
49 50 1.762957 TCTCCCCATTCCATCTTCGTC 59.237 52.381 0.00 0.00 0.00 4.20
50 51 1.765314 CTCTCCCCATTCCATCTTCGT 59.235 52.381 0.00 0.00 0.00 3.85
51 52 2.036992 CTCTCTCCCCATTCCATCTTCG 59.963 54.545 0.00 0.00 0.00 3.79
52 53 2.224499 GCTCTCTCCCCATTCCATCTTC 60.224 54.545 0.00 0.00 0.00 2.87
53 54 1.773653 GCTCTCTCCCCATTCCATCTT 59.226 52.381 0.00 0.00 0.00 2.40
54 55 1.344803 TGCTCTCTCCCCATTCCATCT 60.345 52.381 0.00 0.00 0.00 2.90
55 56 1.135094 TGCTCTCTCCCCATTCCATC 58.865 55.000 0.00 0.00 0.00 3.51
56 57 0.842635 GTGCTCTCTCCCCATTCCAT 59.157 55.000 0.00 0.00 0.00 3.41
57 58 1.274703 GGTGCTCTCTCCCCATTCCA 61.275 60.000 0.00 0.00 0.00 3.53
58 59 1.529309 GGTGCTCTCTCCCCATTCC 59.471 63.158 0.00 0.00 0.00 3.01
59 60 1.144936 CGGTGCTCTCTCCCCATTC 59.855 63.158 0.00 0.00 0.00 2.67
60 61 3.036429 GCGGTGCTCTCTCCCCATT 62.036 63.158 0.00 0.00 0.00 3.16
61 62 3.474570 GCGGTGCTCTCTCCCCAT 61.475 66.667 0.00 0.00 0.00 4.00
62 63 4.704103 AGCGGTGCTCTCTCCCCA 62.704 66.667 0.00 0.00 30.62 4.96
63 64 4.154347 CAGCGGTGCTCTCTCCCC 62.154 72.222 0.00 0.00 36.40 4.81
64 65 3.386237 ACAGCGGTGCTCTCTCCC 61.386 66.667 15.82 0.00 36.40 4.30
65 66 2.125753 CACAGCGGTGCTCTCTCC 60.126 66.667 15.82 0.00 36.40 3.71
66 67 2.125753 CCACAGCGGTGCTCTCTC 60.126 66.667 15.82 0.00 43.88 3.20
67 68 3.699894 CCCACAGCGGTGCTCTCT 61.700 66.667 15.82 0.00 43.88 3.10
77 78 2.044946 AAATCCCTCGCCCACAGC 60.045 61.111 0.00 0.00 38.52 4.40
78 79 0.745845 CTGAAATCCCTCGCCCACAG 60.746 60.000 0.00 0.00 0.00 3.66
79 80 1.299648 CTGAAATCCCTCGCCCACA 59.700 57.895 0.00 0.00 0.00 4.17
80 81 1.452108 CCTGAAATCCCTCGCCCAC 60.452 63.158 0.00 0.00 0.00 4.61
81 82 2.998097 CCTGAAATCCCTCGCCCA 59.002 61.111 0.00 0.00 0.00 5.36
82 83 2.517166 GCCTGAAATCCCTCGCCC 60.517 66.667 0.00 0.00 0.00 6.13
83 84 2.115291 GTGCCTGAAATCCCTCGCC 61.115 63.158 0.00 0.00 0.00 5.54
84 85 1.372087 CTGTGCCTGAAATCCCTCGC 61.372 60.000 0.00 0.00 0.00 5.03
85 86 0.250234 TCTGTGCCTGAAATCCCTCG 59.750 55.000 0.00 0.00 0.00 4.63
86 87 2.725221 ATCTGTGCCTGAAATCCCTC 57.275 50.000 0.00 0.00 0.00 4.30
87 88 3.359950 GAAATCTGTGCCTGAAATCCCT 58.640 45.455 0.00 0.00 0.00 4.20
88 89 2.098117 CGAAATCTGTGCCTGAAATCCC 59.902 50.000 0.00 0.00 0.00 3.85
89 90 3.009723 TCGAAATCTGTGCCTGAAATCC 58.990 45.455 0.00 0.00 0.00 3.01
90 91 4.685169 TTCGAAATCTGTGCCTGAAATC 57.315 40.909 0.00 0.00 0.00 2.17
91 92 4.321230 GGTTTCGAAATCTGTGCCTGAAAT 60.321 41.667 14.69 0.00 0.00 2.17
92 93 3.004315 GGTTTCGAAATCTGTGCCTGAAA 59.996 43.478 14.69 0.00 0.00 2.69
93 94 2.552315 GGTTTCGAAATCTGTGCCTGAA 59.448 45.455 14.69 0.00 0.00 3.02
94 95 2.151202 GGTTTCGAAATCTGTGCCTGA 58.849 47.619 14.69 0.00 0.00 3.86
95 96 1.135972 CGGTTTCGAAATCTGTGCCTG 60.136 52.381 18.49 3.51 39.00 4.85
96 97 1.156736 CGGTTTCGAAATCTGTGCCT 58.843 50.000 18.49 0.00 39.00 4.75
97 98 0.454452 GCGGTTTCGAAATCTGTGCC 60.454 55.000 18.49 10.66 39.00 5.01
98 99 0.454452 GGCGGTTTCGAAATCTGTGC 60.454 55.000 18.49 13.98 39.00 4.57
99 100 0.179225 CGGCGGTTTCGAAATCTGTG 60.179 55.000 18.49 5.01 39.00 3.66
100 101 0.320073 TCGGCGGTTTCGAAATCTGT 60.320 50.000 18.49 0.00 39.00 3.41
101 102 0.094730 GTCGGCGGTTTCGAAATCTG 59.905 55.000 18.49 14.92 38.42 2.90
102 103 1.017701 GGTCGGCGGTTTCGAAATCT 61.018 55.000 18.49 0.00 38.42 2.40
103 104 1.422662 GGTCGGCGGTTTCGAAATC 59.577 57.895 14.69 12.91 38.42 2.17
104 105 2.036571 GGGTCGGCGGTTTCGAAAT 61.037 57.895 14.69 0.00 38.42 2.17
105 106 2.665854 GGGTCGGCGGTTTCGAAA 60.666 61.111 6.47 6.47 38.42 3.46
106 107 4.685467 GGGGTCGGCGGTTTCGAA 62.685 66.667 7.21 0.00 38.42 3.71
117 118 4.400251 AGGGAGGAGTGGGGGTCG 62.400 72.222 0.00 0.00 0.00 4.79
118 119 2.365768 GAGGGAGGAGTGGGGGTC 60.366 72.222 0.00 0.00 0.00 4.46
119 120 4.026357 GGAGGGAGGAGTGGGGGT 62.026 72.222 0.00 0.00 0.00 4.95
120 121 3.700350 AGGAGGGAGGAGTGGGGG 61.700 72.222 0.00 0.00 0.00 5.40
121 122 1.297409 TAGAGGAGGGAGGAGTGGGG 61.297 65.000 0.00 0.00 0.00 4.96
122 123 0.105913 GTAGAGGAGGGAGGAGTGGG 60.106 65.000 0.00 0.00 0.00 4.61
123 124 0.466555 CGTAGAGGAGGGAGGAGTGG 60.467 65.000 0.00 0.00 0.00 4.00
124 125 0.466555 CCGTAGAGGAGGGAGGAGTG 60.467 65.000 0.00 0.00 45.00 3.51
125 126 1.924352 CCGTAGAGGAGGGAGGAGT 59.076 63.158 0.00 0.00 45.00 3.85
126 127 1.529713 GCCGTAGAGGAGGGAGGAG 60.530 68.421 0.00 0.00 45.00 3.69
127 128 1.581923 AAGCCGTAGAGGAGGGAGGA 61.582 60.000 0.00 0.00 45.00 3.71
128 129 0.185416 TAAGCCGTAGAGGAGGGAGG 59.815 60.000 0.00 0.00 45.00 4.30
129 130 1.320507 GTAAGCCGTAGAGGAGGGAG 58.679 60.000 0.00 0.00 45.00 4.30
130 131 0.627451 TGTAAGCCGTAGAGGAGGGA 59.373 55.000 0.00 0.00 45.00 4.20
131 132 1.341531 CATGTAAGCCGTAGAGGAGGG 59.658 57.143 0.00 0.00 45.00 4.30
132 133 2.032620 ACATGTAAGCCGTAGAGGAGG 58.967 52.381 0.00 0.00 45.00 4.30
133 134 2.223829 CCACATGTAAGCCGTAGAGGAG 60.224 54.545 0.00 0.00 45.00 3.69
134 135 1.754803 CCACATGTAAGCCGTAGAGGA 59.245 52.381 0.00 0.00 45.00 3.71
135 136 1.202533 CCCACATGTAAGCCGTAGAGG 60.203 57.143 0.00 0.00 44.97 3.69
136 137 1.806623 GCCCACATGTAAGCCGTAGAG 60.807 57.143 0.00 0.00 0.00 2.43
137 138 0.177141 GCCCACATGTAAGCCGTAGA 59.823 55.000 0.00 0.00 0.00 2.59
138 139 0.814010 GGCCCACATGTAAGCCGTAG 60.814 60.000 19.35 0.00 35.30 3.51
139 140 1.222387 GGCCCACATGTAAGCCGTA 59.778 57.895 19.35 0.00 35.30 4.02
140 141 2.045340 GGCCCACATGTAAGCCGT 60.045 61.111 19.35 0.00 35.30 5.68
142 143 1.453928 GGAGGCCCACATGTAAGCC 60.454 63.158 24.26 24.26 46.13 4.35
143 144 1.453928 GGGAGGCCCACATGTAAGC 60.454 63.158 0.00 10.13 44.65 3.09
144 145 4.986467 GGGAGGCCCACATGTAAG 57.014 61.111 0.00 0.00 44.65 2.34
155 156 1.755393 ATATCCGAACGTGGGGAGGC 61.755 60.000 12.71 0.00 35.40 4.70
156 157 0.033504 CATATCCGAACGTGGGGAGG 59.966 60.000 12.71 2.03 35.40 4.30
157 158 0.033504 CCATATCCGAACGTGGGGAG 59.966 60.000 12.71 1.15 35.40 4.30
158 159 0.397394 TCCATATCCGAACGTGGGGA 60.397 55.000 9.97 9.97 36.61 4.81
159 160 0.249741 GTCCATATCCGAACGTGGGG 60.250 60.000 6.11 2.59 32.58 4.96
160 161 0.462375 TGTCCATATCCGAACGTGGG 59.538 55.000 0.00 0.00 32.58 4.61
161 162 2.303163 TTGTCCATATCCGAACGTGG 57.697 50.000 0.00 0.00 0.00 4.94
162 163 2.350498 GGTTTGTCCATATCCGAACGTG 59.650 50.000 0.00 0.00 35.97 4.49
163 164 2.624636 GGTTTGTCCATATCCGAACGT 58.375 47.619 0.00 0.00 35.97 3.99
164 165 1.591158 CGGTTTGTCCATATCCGAACG 59.409 52.381 0.00 0.00 43.22 3.95
165 166 1.329599 GCGGTTTGTCCATATCCGAAC 59.670 52.381 6.09 0.00 43.22 3.95
166 167 1.658994 GCGGTTTGTCCATATCCGAA 58.341 50.000 6.09 0.00 43.22 4.30
167 168 0.179067 GGCGGTTTGTCCATATCCGA 60.179 55.000 6.09 0.00 43.22 4.55
168 169 1.164041 GGGCGGTTTGTCCATATCCG 61.164 60.000 0.00 0.00 44.04 4.18
169 170 2.715536 GGGCGGTTTGTCCATATCC 58.284 57.895 0.00 0.00 44.04 2.59
175 176 3.299977 GTTGGGGGCGGTTTGTCC 61.300 66.667 0.00 0.00 43.80 4.02
176 177 3.299977 GGTTGGGGGCGGTTTGTC 61.300 66.667 0.00 0.00 0.00 3.18
200 201 4.856801 CGGTCTGGATTGGCCCCG 62.857 72.222 0.00 0.00 33.62 5.73
201 202 4.506255 CCGGTCTGGATTGGCCCC 62.506 72.222 0.00 0.00 42.00 5.80
202 203 4.506255 CCCGGTCTGGATTGGCCC 62.506 72.222 0.00 0.00 42.00 5.80
203 204 3.728373 ACCCGGTCTGGATTGGCC 61.728 66.667 0.00 0.00 42.00 5.36
204 205 2.438434 CACCCGGTCTGGATTGGC 60.438 66.667 0.00 0.00 42.00 4.52
205 206 2.272146 CCACCCGGTCTGGATTGG 59.728 66.667 9.43 1.44 42.00 3.16
206 207 2.438434 GCCACCCGGTCTGGATTG 60.438 66.667 17.75 0.00 42.00 2.67
207 208 2.933287 TGCCACCCGGTCTGGATT 60.933 61.111 17.75 0.00 42.00 3.01
208 209 3.717294 GTGCCACCCGGTCTGGAT 61.717 66.667 17.75 0.00 42.00 3.41
211 212 4.704833 CAGGTGCCACCCGGTCTG 62.705 72.222 11.06 0.00 39.75 3.51
242 243 4.812476 TTCCTGGCCGCACGATCG 62.812 66.667 14.88 14.88 0.00 3.69
243 244 2.892425 CTTCCTGGCCGCACGATC 60.892 66.667 0.00 0.00 0.00 3.69
269 270 1.474017 CGCACTATCTAACCGAACCG 58.526 55.000 0.00 0.00 0.00 4.44
270 271 1.206523 GCGCACTATCTAACCGAACC 58.793 55.000 0.30 0.00 0.00 3.62
271 272 0.844503 CGCGCACTATCTAACCGAAC 59.155 55.000 8.75 0.00 0.00 3.95
272 273 0.452987 ACGCGCACTATCTAACCGAA 59.547 50.000 5.73 0.00 0.00 4.30
273 274 0.248336 CACGCGCACTATCTAACCGA 60.248 55.000 5.73 0.00 0.00 4.69
274 275 1.808234 GCACGCGCACTATCTAACCG 61.808 60.000 5.73 0.00 38.36 4.44
275 276 0.804544 TGCACGCGCACTATCTAACC 60.805 55.000 5.73 0.00 45.36 2.85
276 277 2.660944 TGCACGCGCACTATCTAAC 58.339 52.632 5.73 0.00 45.36 2.34
286 287 0.109964 TAAATCCAAAGTGCACGCGC 60.110 50.000 12.01 0.00 39.24 6.86
287 288 1.465689 CCTAAATCCAAAGTGCACGCG 60.466 52.381 12.01 3.53 0.00 6.01
288 289 1.810151 TCCTAAATCCAAAGTGCACGC 59.190 47.619 12.01 0.00 0.00 5.34
289 290 4.497473 TTTCCTAAATCCAAAGTGCACG 57.503 40.909 12.01 0.00 0.00 5.34
313 314 8.995577 ACCCTTAGCAAAATAACTGGTAGTATA 58.004 33.333 0.00 0.00 0.00 1.47
314 315 7.868974 ACCCTTAGCAAAATAACTGGTAGTAT 58.131 34.615 0.00 0.00 0.00 2.12
315 316 7.038160 TGACCCTTAGCAAAATAACTGGTAGTA 60.038 37.037 0.00 0.00 0.00 1.82
316 317 6.135819 ACCCTTAGCAAAATAACTGGTAGT 57.864 37.500 0.00 0.00 0.00 2.73
317 318 6.093633 GTGACCCTTAGCAAAATAACTGGTAG 59.906 42.308 0.00 0.00 0.00 3.18
318 319 5.941647 GTGACCCTTAGCAAAATAACTGGTA 59.058 40.000 0.00 0.00 0.00 3.25
319 320 4.765339 GTGACCCTTAGCAAAATAACTGGT 59.235 41.667 0.00 0.00 0.00 4.00
320 321 5.010282 AGTGACCCTTAGCAAAATAACTGG 58.990 41.667 0.00 0.00 0.00 4.00
321 322 5.473504 ACAGTGACCCTTAGCAAAATAACTG 59.526 40.000 0.00 0.00 37.80 3.16
322 323 5.631119 ACAGTGACCCTTAGCAAAATAACT 58.369 37.500 0.00 0.00 0.00 2.24
323 324 5.705905 AGACAGTGACCCTTAGCAAAATAAC 59.294 40.000 0.00 0.00 0.00 1.89
324 325 5.705441 CAGACAGTGACCCTTAGCAAAATAA 59.295 40.000 0.00 0.00 0.00 1.40
325 326 5.245531 CAGACAGTGACCCTTAGCAAAATA 58.754 41.667 0.00 0.00 0.00 1.40
326 327 4.074970 CAGACAGTGACCCTTAGCAAAAT 58.925 43.478 0.00 0.00 0.00 1.82
327 328 3.476552 CAGACAGTGACCCTTAGCAAAA 58.523 45.455 0.00 0.00 0.00 2.44
328 329 2.810400 GCAGACAGTGACCCTTAGCAAA 60.810 50.000 0.00 0.00 0.00 3.68
329 330 1.270839 GCAGACAGTGACCCTTAGCAA 60.271 52.381 0.00 0.00 0.00 3.91
330 331 0.321671 GCAGACAGTGACCCTTAGCA 59.678 55.000 0.00 0.00 0.00 3.49
331 332 0.321671 TGCAGACAGTGACCCTTAGC 59.678 55.000 0.00 0.00 0.00 3.09
332 333 2.625737 CATGCAGACAGTGACCCTTAG 58.374 52.381 0.00 0.00 0.00 2.18
333 334 1.278985 CCATGCAGACAGTGACCCTTA 59.721 52.381 0.00 0.00 0.00 2.69
334 335 0.037303 CCATGCAGACAGTGACCCTT 59.963 55.000 0.00 0.00 0.00 3.95
335 336 0.837691 TCCATGCAGACAGTGACCCT 60.838 55.000 0.00 0.00 0.00 4.34
336 337 0.254178 ATCCATGCAGACAGTGACCC 59.746 55.000 0.00 0.00 0.00 4.46
337 338 1.339438 ACATCCATGCAGACAGTGACC 60.339 52.381 0.00 0.00 0.00 4.02
338 339 2.105006 ACATCCATGCAGACAGTGAC 57.895 50.000 0.00 0.00 0.00 3.67
339 340 2.038820 TGAACATCCATGCAGACAGTGA 59.961 45.455 0.00 0.00 0.00 3.41
340 341 2.429478 TGAACATCCATGCAGACAGTG 58.571 47.619 0.00 0.00 0.00 3.66
341 342 2.865119 TGAACATCCATGCAGACAGT 57.135 45.000 0.00 0.00 0.00 3.55
342 343 4.713824 AAATGAACATCCATGCAGACAG 57.286 40.909 0.00 0.00 0.00 3.51
343 344 5.471556 AAAAATGAACATCCATGCAGACA 57.528 34.783 0.00 0.00 0.00 3.41
364 365 1.324383 GCGAAGGTCCAAGGGAAAAA 58.676 50.000 0.00 0.00 31.38 1.94
365 366 0.183971 TGCGAAGGTCCAAGGGAAAA 59.816 50.000 0.00 0.00 31.38 2.29
366 367 0.404040 ATGCGAAGGTCCAAGGGAAA 59.596 50.000 0.00 0.00 31.38 3.13
367 368 0.322456 CATGCGAAGGTCCAAGGGAA 60.322 55.000 0.00 0.00 31.38 3.97
368 369 1.299648 CATGCGAAGGTCCAAGGGA 59.700 57.895 0.00 0.00 0.00 4.20
369 370 1.002134 ACATGCGAAGGTCCAAGGG 60.002 57.895 0.00 0.00 0.00 3.95
370 371 1.926511 GCACATGCGAAGGTCCAAGG 61.927 60.000 0.00 0.00 0.00 3.61
371 372 1.503542 GCACATGCGAAGGTCCAAG 59.496 57.895 0.00 0.00 0.00 3.61
372 373 3.667087 GCACATGCGAAGGTCCAA 58.333 55.556 0.00 0.00 0.00 3.53
401 402 0.799534 GCACATGCGAAGGTTCATGC 60.800 55.000 0.00 0.00 42.72 4.06
403 404 1.466856 ATGCACATGCGAAGGTTCAT 58.533 45.000 0.00 0.00 45.83 2.57
406 407 0.244450 CCAATGCACATGCGAAGGTT 59.756 50.000 0.00 0.00 45.83 3.50
414 415 0.311790 GATACCCGCCAATGCACATG 59.688 55.000 0.00 0.00 37.32 3.21
497 503 1.338655 GTGTCCGAGCCCTATTCTCTC 59.661 57.143 0.00 0.00 0.00 3.20
504 510 1.476845 TTTGCTGTGTCCGAGCCCTA 61.477 55.000 0.00 0.00 35.43 3.53
506 512 1.452145 TTTTTGCTGTGTCCGAGCCC 61.452 55.000 0.00 0.00 35.43 5.19
510 516 3.680490 TGGATATTTTTGCTGTGTCCGA 58.320 40.909 0.00 0.00 0.00 4.55
513 519 4.168760 GCACTGGATATTTTTGCTGTGTC 58.831 43.478 0.00 0.00 38.53 3.67
737 746 2.204090 GAGGGGGTGAAGGTGGGA 60.204 66.667 0.00 0.00 0.00 4.37
854 863 2.005370 ATAGACGGGGCGAAGGAATA 57.995 50.000 0.00 0.00 0.00 1.75
863 872 2.361438 CGGAGGATTATATAGACGGGGC 59.639 54.545 0.00 0.00 0.00 5.80
990 1023 3.401411 CTCGCCATGCTCGATCGC 61.401 66.667 11.09 0.00 35.25 4.58
991 1024 3.401411 GCTCGCCATGCTCGATCG 61.401 66.667 9.36 9.36 35.25 3.69
992 1025 3.401411 CGCTCGCCATGCTCGATC 61.401 66.667 8.40 4.58 35.25 3.69
993 1026 4.957684 CCGCTCGCCATGCTCGAT 62.958 66.667 8.40 0.00 35.25 3.59
1023 1056 2.484062 CCGGTCGCCGTGGTAGTAT 61.484 63.158 15.38 0.00 46.80 2.12
1142 1184 1.502190 CAGTGCGAGTAGAGCGACA 59.498 57.895 0.00 0.00 37.44 4.35
1171 1213 2.486042 GTCGACGAGGCTCTCCAC 59.514 66.667 13.50 4.67 33.74 4.02
1280 1322 2.639856 GCGACGACGACGAGTACG 60.640 66.667 22.94 13.78 42.66 3.67
1281 1323 1.577117 CAGCGACGACGACGAGTAC 60.577 63.158 22.94 5.51 42.66 2.73
1283 1325 4.086178 CCAGCGACGACGACGAGT 62.086 66.667 22.94 6.55 42.66 4.18
1284 1326 3.785499 TCCAGCGACGACGACGAG 61.785 66.667 22.94 13.52 42.66 4.18
1503 1557 2.202743 TTCTAGCTGCGCGCGAAT 60.203 55.556 37.18 12.53 45.59 3.34
1521 1589 6.760291 ACCAAATGCTATACTAGTTCTAGGC 58.240 40.000 0.00 0.00 0.00 3.93
1522 1590 7.868415 GTGACCAAATGCTATACTAGTTCTAGG 59.132 40.741 0.00 0.00 0.00 3.02
1523 1591 7.591795 CGTGACCAAATGCTATACTAGTTCTAG 59.408 40.741 0.00 4.30 0.00 2.43
1524 1592 7.067859 ACGTGACCAAATGCTATACTAGTTCTA 59.932 37.037 0.00 0.00 0.00 2.10
1525 1593 6.127423 ACGTGACCAAATGCTATACTAGTTCT 60.127 38.462 0.00 0.00 0.00 3.01
1526 1594 6.040878 ACGTGACCAAATGCTATACTAGTTC 58.959 40.000 0.00 0.00 0.00 3.01
1528 1596 5.593679 ACGTGACCAAATGCTATACTAGT 57.406 39.130 0.00 0.00 0.00 2.57
1529 1597 5.624081 CGTACGTGACCAAATGCTATACTAG 59.376 44.000 7.22 0.00 0.00 2.57
1530 1598 5.506151 CCGTACGTGACCAAATGCTATACTA 60.506 44.000 15.21 0.00 0.00 1.82
1531 1599 4.357142 CGTACGTGACCAAATGCTATACT 58.643 43.478 7.22 0.00 0.00 2.12
1532 1600 3.488310 CCGTACGTGACCAAATGCTATAC 59.512 47.826 15.21 0.00 0.00 1.47
1533 1601 3.491276 CCCGTACGTGACCAAATGCTATA 60.491 47.826 15.21 0.00 0.00 1.31
1534 1602 2.546778 CCGTACGTGACCAAATGCTAT 58.453 47.619 15.21 0.00 0.00 2.97
1535 1603 1.404449 CCCGTACGTGACCAAATGCTA 60.404 52.381 15.21 0.00 0.00 3.49
1557 1625 9.487790 GTGAAGAAATATAAGAGAGCTAGCATT 57.512 33.333 18.83 3.79 0.00 3.56
1565 1633 8.243961 TCCCTCTGTGAAGAAATATAAGAGAG 57.756 38.462 0.00 0.00 33.14 3.20
1566 1634 7.841729 ACTCCCTCTGTGAAGAAATATAAGAGA 59.158 37.037 0.00 0.00 33.14 3.10
1567 1635 8.017418 ACTCCCTCTGTGAAGAAATATAAGAG 57.983 38.462 0.00 0.00 0.00 2.85
1568 1636 7.979786 ACTCCCTCTGTGAAGAAATATAAGA 57.020 36.000 0.00 0.00 0.00 2.10
1569 1637 8.919145 AGTACTCCCTCTGTGAAGAAATATAAG 58.081 37.037 0.00 0.00 0.00 1.73
1593 1661 9.819267 GATAATTTTCTTGCCTAGTACAGTAGT 57.181 33.333 0.00 0.00 0.00 2.73
1594 1662 8.969267 CGATAATTTTCTTGCCTAGTACAGTAG 58.031 37.037 0.00 0.00 0.00 2.57
1595 1663 7.924412 CCGATAATTTTCTTGCCTAGTACAGTA 59.076 37.037 0.00 0.00 0.00 2.74
1596 1664 6.761714 CCGATAATTTTCTTGCCTAGTACAGT 59.238 38.462 0.00 0.00 0.00 3.55
1597 1665 6.292919 GCCGATAATTTTCTTGCCTAGTACAG 60.293 42.308 0.00 0.00 0.00 2.74
1598 1666 5.526111 GCCGATAATTTTCTTGCCTAGTACA 59.474 40.000 0.00 0.00 0.00 2.90
1599 1667 5.526111 TGCCGATAATTTTCTTGCCTAGTAC 59.474 40.000 0.00 0.00 0.00 2.73
1655 1723 3.291584 TGACGGCTAAGACATCTCTGAT 58.708 45.455 0.00 0.00 0.00 2.90
1658 1726 3.006112 TCTGACGGCTAAGACATCTCT 57.994 47.619 0.00 0.00 0.00 3.10
1659 1727 3.784701 TTCTGACGGCTAAGACATCTC 57.215 47.619 0.00 0.00 0.00 2.75
1768 1848 7.027778 AGACCGAAATAATTTGATAACTGCC 57.972 36.000 0.00 0.00 0.00 4.85
1819 1899 6.796072 CAGTACAGTACGAGTAGTGTTTCTTC 59.204 42.308 23.54 12.29 44.75 2.87
1907 2084 7.858879 GCAAAGATTCGTGGTTTTAAAAGACTA 59.141 33.333 0.00 0.00 0.00 2.59
1929 2106 7.596995 CGGTTTGGTTCTTATATTCTTTGCAAA 59.403 33.333 12.14 12.14 0.00 3.68
1991 2168 9.858247 GCATTCAAAGATTCGTCGTTTAATATA 57.142 29.630 0.00 0.00 0.00 0.86
1992 2169 8.394877 TGCATTCAAAGATTCGTCGTTTAATAT 58.605 29.630 0.00 0.00 0.00 1.28
1993 2170 7.744059 TGCATTCAAAGATTCGTCGTTTAATA 58.256 30.769 0.00 0.00 0.00 0.98
1994 2171 6.607689 TGCATTCAAAGATTCGTCGTTTAAT 58.392 32.000 0.00 0.00 0.00 1.40
2087 2264 5.669477 AGTTAACTGGCAGCAAAATCAAAA 58.331 33.333 15.89 0.00 0.00 2.44
2138 2315 9.893305 CTGGTCAATTTCGATTAGTTAACTTTT 57.107 29.630 14.49 1.30 0.00 2.27
2139 2316 9.063615 ACTGGTCAATTTCGATTAGTTAACTTT 57.936 29.630 14.49 1.69 0.00 2.66
2140 2317 8.504005 CACTGGTCAATTTCGATTAGTTAACTT 58.496 33.333 14.49 0.00 0.00 2.66
2141 2318 7.876068 TCACTGGTCAATTTCGATTAGTTAACT 59.124 33.333 13.68 13.68 0.00 2.24
2142 2319 8.025243 TCACTGGTCAATTTCGATTAGTTAAC 57.975 34.615 0.00 0.00 0.00 2.01
2143 2320 8.610248 TTCACTGGTCAATTTCGATTAGTTAA 57.390 30.769 0.00 0.00 0.00 2.01
2144 2321 8.092068 TCTTCACTGGTCAATTTCGATTAGTTA 58.908 33.333 0.00 0.00 0.00 2.24
2145 2322 6.934645 TCTTCACTGGTCAATTTCGATTAGTT 59.065 34.615 0.00 0.00 0.00 2.24
2146 2323 6.464222 TCTTCACTGGTCAATTTCGATTAGT 58.536 36.000 0.00 0.00 0.00 2.24
2147 2324 6.968131 TCTTCACTGGTCAATTTCGATTAG 57.032 37.500 0.00 0.00 0.00 1.73
2148 2325 6.128661 CGTTCTTCACTGGTCAATTTCGATTA 60.129 38.462 0.00 0.00 0.00 1.75
2149 2326 5.334105 CGTTCTTCACTGGTCAATTTCGATT 60.334 40.000 0.00 0.00 0.00 3.34
2150 2327 4.152402 CGTTCTTCACTGGTCAATTTCGAT 59.848 41.667 0.00 0.00 0.00 3.59
2151 2328 3.493129 CGTTCTTCACTGGTCAATTTCGA 59.507 43.478 0.00 0.00 0.00 3.71
2152 2329 3.247648 ACGTTCTTCACTGGTCAATTTCG 59.752 43.478 0.00 0.00 0.00 3.46
2153 2330 4.527564 CACGTTCTTCACTGGTCAATTTC 58.472 43.478 0.00 0.00 0.00 2.17
2154 2331 3.315191 CCACGTTCTTCACTGGTCAATTT 59.685 43.478 0.00 0.00 0.00 1.82
2155 2332 2.878406 CCACGTTCTTCACTGGTCAATT 59.122 45.455 0.00 0.00 0.00 2.32
2156 2333 2.104111 TCCACGTTCTTCACTGGTCAAT 59.896 45.455 0.00 0.00 0.00 2.57
2157 2334 1.483004 TCCACGTTCTTCACTGGTCAA 59.517 47.619 0.00 0.00 0.00 3.18
2158 2335 1.116308 TCCACGTTCTTCACTGGTCA 58.884 50.000 0.00 0.00 0.00 4.02
2159 2336 2.234300 TTCCACGTTCTTCACTGGTC 57.766 50.000 0.00 0.00 0.00 4.02
2160 2337 2.285977 GTTTCCACGTTCTTCACTGGT 58.714 47.619 0.00 0.00 0.00 4.00
2161 2338 1.260561 CGTTTCCACGTTCTTCACTGG 59.739 52.381 0.00 0.00 41.84 4.00
2162 2339 2.645628 CGTTTCCACGTTCTTCACTG 57.354 50.000 0.00 0.00 41.84 3.66
2187 2364 8.947115 TCGTTCTTTCTTTCTTTCTTTCTTTCT 58.053 29.630 0.00 0.00 0.00 2.52
2201 2378 4.845621 TTCGTTCGTTCGTTCTTTCTTT 57.154 36.364 2.67 0.00 0.00 2.52
2204 2381 4.205792 TCTCTTTCGTTCGTTCGTTCTTTC 59.794 41.667 2.67 0.00 0.00 2.62
2205 2382 4.107622 TCTCTTTCGTTCGTTCGTTCTTT 58.892 39.130 2.67 0.00 0.00 2.52
2206 2383 3.699067 TCTCTTTCGTTCGTTCGTTCTT 58.301 40.909 2.67 0.00 0.00 2.52
2207 2384 3.344904 TCTCTTTCGTTCGTTCGTTCT 57.655 42.857 2.67 0.00 0.00 3.01
2208 2385 4.427438 TTTCTCTTTCGTTCGTTCGTTC 57.573 40.909 2.67 0.00 0.00 3.95
2209 2386 4.758561 CATTTCTCTTTCGTTCGTTCGTT 58.241 39.130 2.67 0.00 0.00 3.85
2210 2387 3.362693 GCATTTCTCTTTCGTTCGTTCGT 60.363 43.478 2.67 0.00 0.00 3.85
2211 2388 3.146250 GCATTTCTCTTTCGTTCGTTCG 58.854 45.455 0.00 0.00 0.00 3.95
2212 2389 4.128554 TGCATTTCTCTTTCGTTCGTTC 57.871 40.909 0.00 0.00 0.00 3.95
2213 2390 4.545823 TTGCATTTCTCTTTCGTTCGTT 57.454 36.364 0.00 0.00 0.00 3.85
2214 2391 4.749245 ATTGCATTTCTCTTTCGTTCGT 57.251 36.364 0.00 0.00 0.00 3.85
2215 2392 5.617609 TGTATTGCATTTCTCTTTCGTTCG 58.382 37.500 0.00 0.00 0.00 3.95
2219 2396 5.551760 ACCTGTATTGCATTTCTCTTTCG 57.448 39.130 0.00 0.00 0.00 3.46
2241 2425 3.430374 CCGGCCGAAAGAGAAGAAAGATA 60.430 47.826 30.73 0.00 0.00 1.98
2242 2426 2.622436 CGGCCGAAAGAGAAGAAAGAT 58.378 47.619 24.07 0.00 0.00 2.40
2401 2647 0.816825 ATTCCGGTCGCTACTCGCTA 60.817 55.000 0.00 0.00 38.27 4.26
2402 2648 2.061182 GATTCCGGTCGCTACTCGCT 62.061 60.000 0.00 0.00 38.27 4.93
2403 2649 1.657794 GATTCCGGTCGCTACTCGC 60.658 63.158 0.00 0.00 38.27 5.03
2405 2651 1.022735 TGAGATTCCGGTCGCTACTC 58.977 55.000 0.00 4.32 0.00 2.59
2406 2652 0.739561 GTGAGATTCCGGTCGCTACT 59.260 55.000 0.00 0.00 0.00 2.57
2407 2653 0.591741 CGTGAGATTCCGGTCGCTAC 60.592 60.000 0.00 0.00 0.00 3.58
2430 2676 2.668280 GCGACGCCAACAGGAACTC 61.668 63.158 9.14 0.00 34.60 3.01
2450 2696 1.299468 CTCCGAGAAATCGAGCCCG 60.299 63.158 0.00 0.00 34.64 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.