Multiple sequence alignment - TraesCS6D01G300700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G300700 chr6D 100.000 2818 0 0 1 2818 410174379 410171562 0.000000e+00 5204.0
1 TraesCS6D01G300700 chr6D 94.531 128 3 1 2317 2444 80260613 80260736 7.970000e-46 195.0
2 TraesCS6D01G300700 chr6D 94.531 128 3 1 2317 2444 181640759 181640882 7.970000e-46 195.0
3 TraesCS6D01G300700 chr6D 94.531 128 3 1 2317 2444 304476314 304476437 7.970000e-46 195.0
4 TraesCS6D01G300700 chr6D 93.893 131 4 1 2317 2447 422418267 422418141 7.970000e-46 195.0
5 TraesCS6D01G300700 chr6D 93.333 60 4 0 2443 2502 309741620 309741561 3.870000e-14 89.8
6 TraesCS6D01G300700 chr6B 90.547 1280 70 19 903 2159 617113412 617112161 0.000000e+00 1646.0
7 TraesCS6D01G300700 chr6B 95.312 384 11 5 185 563 617114144 617113763 1.120000e-168 603.0
8 TraesCS6D01G300700 chr6B 94.382 178 8 2 9 185 617114528 617114352 3.580000e-69 272.0
9 TraesCS6D01G300700 chr6B 89.855 207 21 0 2500 2706 617112161 617111955 1.660000e-67 267.0
10 TraesCS6D01G300700 chr6B 94.175 103 6 0 2716 2818 617110461 617110359 1.050000e-34 158.0
11 TraesCS6D01G300700 chr6B 81.517 211 19 14 646 839 617113644 617113437 3.760000e-34 156.0
12 TraesCS6D01G300700 chr6A 93.673 569 26 6 1 563 555672025 555671461 0.000000e+00 843.0
13 TraesCS6D01G300700 chr6A 96.725 458 12 2 1443 1899 555669985 555669530 0.000000e+00 760.0
14 TraesCS6D01G300700 chr6A 89.811 530 22 13 891 1419 555671096 555670598 0.000000e+00 651.0
15 TraesCS6D01G300700 chr4A 97.076 171 4 1 2149 2319 527180371 527180202 1.280000e-73 287.0
16 TraesCS6D01G300700 chr2D 96.512 172 4 2 2149 2319 370984094 370984264 1.650000e-72 283.0
17 TraesCS6D01G300700 chr2D 94.886 176 7 2 2149 2323 156198182 156198008 9.950000e-70 274.0
18 TraesCS6D01G300700 chr2D 93.333 60 4 0 2443 2502 371014416 371014475 3.870000e-14 89.8
19 TraesCS6D01G300700 chr5D 95.930 172 5 2 2149 2319 375639505 375639335 7.690000e-71 278.0
20 TraesCS6D01G300700 chr5D 97.516 161 4 0 2159 2319 383118134 383117974 2.770000e-70 276.0
21 TraesCS6D01G300700 chr5D 92.063 63 5 0 2443 2505 305658219 305658281 3.870000e-14 89.8
22 TraesCS6D01G300700 chr7A 97.516 161 4 0 2159 2319 119242060 119241900 2.770000e-70 276.0
23 TraesCS6D01G300700 chr1D 97.516 161 4 0 2159 2319 31623612 31623772 2.770000e-70 276.0
24 TraesCS6D01G300700 chr1D 94.615 130 3 1 2317 2446 31623694 31623819 6.160000e-47 198.0
25 TraesCS6D01G300700 chr1D 93.443 61 4 0 2443 2503 169064567 169064507 1.080000e-14 91.6
26 TraesCS6D01G300700 chr1D 92.063 63 5 0 2443 2505 336019473 336019411 3.870000e-14 89.8
27 TraesCS6D01G300700 chr7D 95.349 172 6 2 2149 2319 406497906 406498076 3.580000e-69 272.0
28 TraesCS6D01G300700 chr7D 93.333 60 4 0 2443 2502 345798184 345798243 3.870000e-14 89.8
29 TraesCS6D01G300700 chr7D 91.935 62 5 0 2443 2504 222663856 222663917 1.390000e-13 87.9
30 TraesCS6D01G300700 chr4D 95.349 172 6 2 2149 2319 324843498 324843668 3.580000e-69 272.0
31 TraesCS6D01G300700 chr4D 93.893 131 4 1 2317 2447 205580615 205580489 7.970000e-46 195.0
32 TraesCS6D01G300700 chr4D 93.893 131 4 1 2317 2447 287304792 287304666 7.970000e-46 195.0
33 TraesCS6D01G300700 chr4D 94.531 128 3 1 2317 2444 350975895 350976018 7.970000e-46 195.0
34 TraesCS6D01G300700 chr4D 94.531 128 3 1 2317 2444 427874974 427875097 7.970000e-46 195.0
35 TraesCS6D01G300700 chr2B 94.915 59 3 0 2442 2500 65145064 65145006 2.990000e-15 93.5
36 TraesCS6D01G300700 chr1B 93.333 60 4 0 2443 2502 629966753 629966694 3.870000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G300700 chr6D 410171562 410174379 2817 True 5204.000000 5204 100.000000 1 2818 1 chr6D.!!$R2 2817
1 TraesCS6D01G300700 chr6B 617110359 617114528 4169 True 517.000000 1646 90.964667 9 2818 6 chr6B.!!$R1 2809
2 TraesCS6D01G300700 chr6A 555669530 555672025 2495 True 751.333333 843 93.403000 1 1899 3 chr6A.!!$R1 1898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 1090 0.038159 GACACTGGAAGACTGGTCGG 60.038 60.0 0.0 0.0 37.43 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2166 3126 0.033642 CATTGCAACACATGGGCACA 59.966 50.0 0.0 0.0 37.26 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
263 476 0.879090 TCTTCGAGACAAGTAGCGCA 59.121 50.000 11.47 0.00 0.00 6.09
330 543 2.433318 GCTGTCACCTCGTCTGGC 60.433 66.667 0.00 0.00 0.00 4.85
420 635 2.808244 ACTTTTGTTGCATGGTTCGTG 58.192 42.857 0.00 0.00 0.00 4.35
495 710 6.659824 ACCAAGACTCACTTTTCTCCTTTTA 58.340 36.000 0.00 0.00 36.61 1.52
510 725 6.331061 TCTCCTTTTACTTTATCTGCGAGTC 58.669 40.000 0.00 0.00 0.00 3.36
556 774 9.682465 TCAGTAGTATGATCTTTACACTGTACT 57.318 33.333 21.08 13.22 34.26 2.73
576 818 5.762179 ACTATCTGAATGTGTTCTTCCCA 57.238 39.130 0.00 0.00 35.33 4.37
577 819 5.491982 ACTATCTGAATGTGTTCTTCCCAC 58.508 41.667 0.00 0.00 35.33 4.61
578 820 4.647564 ATCTGAATGTGTTCTTCCCACT 57.352 40.909 0.00 0.00 35.33 4.00
581 823 5.551233 TCTGAATGTGTTCTTCCCACTAAG 58.449 41.667 0.00 0.00 35.33 2.18
582 824 5.306937 TCTGAATGTGTTCTTCCCACTAAGA 59.693 40.000 0.00 0.00 35.33 2.10
583 825 5.935945 TGAATGTGTTCTTCCCACTAAGAA 58.064 37.500 0.00 0.00 41.90 2.52
584 826 5.997746 TGAATGTGTTCTTCCCACTAAGAAG 59.002 40.000 0.00 0.00 44.09 2.85
585 827 5.825593 ATGTGTTCTTCCCACTAAGAAGA 57.174 39.130 0.00 0.00 46.11 2.87
590 832 4.974645 TCTTCCCACTAAGAAGAAAGCA 57.025 40.909 0.86 0.00 45.11 3.91
605 847 8.635877 AGAAGAAAGCACGAGTATTACTTATG 57.364 34.615 0.00 1.45 0.00 1.90
606 848 8.251721 AGAAGAAAGCACGAGTATTACTTATGT 58.748 33.333 0.00 0.00 0.00 2.29
607 849 7.988904 AGAAAGCACGAGTATTACTTATGTC 57.011 36.000 0.00 0.00 0.00 3.06
608 850 6.979238 AGAAAGCACGAGTATTACTTATGTCC 59.021 38.462 0.00 0.00 0.00 4.02
610 852 6.216801 AGCACGAGTATTACTTATGTCCAA 57.783 37.500 0.00 0.00 0.00 3.53
612 854 6.096423 AGCACGAGTATTACTTATGTCCAAGA 59.904 38.462 0.00 0.00 0.00 3.02
613 855 6.198591 GCACGAGTATTACTTATGTCCAAGAC 59.801 42.308 0.00 0.00 0.00 3.01
614 856 7.255569 CACGAGTATTACTTATGTCCAAGACA 58.744 38.462 0.00 0.00 46.90 3.41
615 857 7.220300 CACGAGTATTACTTATGTCCAAGACAC 59.780 40.741 0.00 0.00 45.65 3.67
616 858 7.094075 ACGAGTATTACTTATGTCCAAGACACA 60.094 37.037 0.00 0.00 45.65 3.72
617 859 7.758076 CGAGTATTACTTATGTCCAAGACACAA 59.242 37.037 0.00 0.00 45.65 3.33
621 863 2.489938 TATGTCCAAGACACAAGGGC 57.510 50.000 0.00 0.00 45.65 5.19
622 864 0.478072 ATGTCCAAGACACAAGGGCA 59.522 50.000 0.00 0.00 45.65 5.36
623 865 0.478072 TGTCCAAGACACAAGGGCAT 59.522 50.000 0.00 0.00 37.67 4.40
624 866 0.883833 GTCCAAGACACAAGGGCATG 59.116 55.000 0.00 0.00 32.09 4.06
625 867 0.251297 TCCAAGACACAAGGGCATGG 60.251 55.000 0.00 0.00 0.00 3.66
626 868 1.588082 CAAGACACAAGGGCATGGC 59.412 57.895 11.56 11.56 0.00 4.40
627 869 1.973281 AAGACACAAGGGCATGGCG 60.973 57.895 13.76 1.88 0.00 5.69
628 870 2.359850 GACACAAGGGCATGGCGA 60.360 61.111 13.76 0.00 0.00 5.54
629 871 2.672996 ACACAAGGGCATGGCGAC 60.673 61.111 13.76 0.00 0.00 5.19
631 873 2.045926 ACAAGGGCATGGCGACTC 60.046 61.111 13.76 0.00 0.00 3.36
635 877 0.962356 AAGGGCATGGCGACTCAAAG 60.962 55.000 13.76 0.00 0.00 2.77
636 878 2.409870 GGGCATGGCGACTCAAAGG 61.410 63.158 13.76 0.00 0.00 3.11
637 879 1.377202 GGCATGGCGACTCAAAGGA 60.377 57.895 2.41 0.00 0.00 3.36
640 882 1.269448 GCATGGCGACTCAAAGGAAAA 59.731 47.619 0.00 0.00 0.00 2.29
665 948 2.469274 AGACACAAGAGCATGGACAG 57.531 50.000 0.00 0.00 0.00 3.51
667 950 2.028294 AGACACAAGAGCATGGACAGAG 60.028 50.000 0.00 0.00 0.00 3.35
668 951 1.085091 CACAAGAGCATGGACAGAGC 58.915 55.000 0.00 0.00 0.00 4.09
689 980 0.523968 GCACAGTGCACACAACAGTG 60.524 55.000 21.22 16.67 44.26 3.66
692 983 1.378382 AGTGCACACAACAGTGGCA 60.378 52.632 21.04 7.39 39.87 4.92
697 988 1.067516 GCACACAACAGTGGCATCTTT 59.932 47.619 0.00 0.00 39.87 2.52
744 1038 6.017605 GCATCCAAGATATTTACTCACAGTGG 60.018 42.308 0.00 0.00 0.00 4.00
755 1049 3.820557 ACTCACAGTGGTGCACTATTTT 58.179 40.909 17.98 0.00 43.43 1.82
758 1052 2.294233 CACAGTGGTGCACTATTTTGCT 59.706 45.455 17.98 0.05 43.43 3.91
759 1053 3.501828 CACAGTGGTGCACTATTTTGCTA 59.498 43.478 17.98 0.00 43.43 3.49
762 1056 2.482721 GTGGTGCACTATTTTGCTACGT 59.517 45.455 17.98 0.00 43.41 3.57
773 1076 2.148916 TTGCTACGTGACACTGGAAG 57.851 50.000 0.00 1.89 42.29 3.46
781 1089 0.673985 TGACACTGGAAGACTGGTCG 59.326 55.000 0.00 0.00 37.43 4.79
782 1090 0.038159 GACACTGGAAGACTGGTCGG 60.038 60.000 0.00 0.00 37.43 4.79
783 1091 1.293498 CACTGGAAGACTGGTCGGG 59.707 63.158 0.00 0.00 37.43 5.14
849 1167 9.747898 AACTGGTTGTTACAAAGATATATTGGA 57.252 29.630 0.00 0.00 37.07 3.53
850 1168 9.920946 ACTGGTTGTTACAAAGATATATTGGAT 57.079 29.630 0.00 0.00 32.02 3.41
879 1197 9.753674 ATTGAGGTAAAAGAAAGATGTAATGGA 57.246 29.630 0.00 0.00 0.00 3.41
880 1198 8.792830 TGAGGTAAAAGAAAGATGTAATGGAG 57.207 34.615 0.00 0.00 0.00 3.86
881 1199 8.602424 TGAGGTAAAAGAAAGATGTAATGGAGA 58.398 33.333 0.00 0.00 0.00 3.71
882 1200 9.449719 GAGGTAAAAGAAAGATGTAATGGAGAA 57.550 33.333 0.00 0.00 0.00 2.87
883 1201 9.807921 AGGTAAAAGAAAGATGTAATGGAGAAA 57.192 29.630 0.00 0.00 0.00 2.52
977 1299 3.131046 GGCTTTAGCACAGGCATAAACAT 59.869 43.478 3.88 0.00 44.61 2.71
978 1300 4.338118 GGCTTTAGCACAGGCATAAACATA 59.662 41.667 3.88 0.00 44.61 2.29
981 1303 3.287867 AGCACAGGCATAAACATAGCT 57.712 42.857 0.00 0.00 44.61 3.32
984 1306 3.198068 CACAGGCATAAACATAGCTCGT 58.802 45.455 0.00 0.00 0.00 4.18
987 1309 2.700897 AGGCATAAACATAGCTCGTCCT 59.299 45.455 0.00 0.00 0.00 3.85
989 1311 3.248602 GGCATAAACATAGCTCGTCCTTG 59.751 47.826 0.00 0.00 0.00 3.61
990 1312 3.303395 GCATAAACATAGCTCGTCCTTGC 60.303 47.826 0.00 0.00 0.00 4.01
1047 1369 1.300620 CGACAGGTTCAGCAACGGA 60.301 57.895 0.00 0.00 32.68 4.69
1217 1566 0.689623 CTGTTCCCCTCTTGCTCAGT 59.310 55.000 0.00 0.00 0.00 3.41
1218 1567 1.072965 CTGTTCCCCTCTTGCTCAGTT 59.927 52.381 0.00 0.00 0.00 3.16
1219 1568 1.072331 TGTTCCCCTCTTGCTCAGTTC 59.928 52.381 0.00 0.00 0.00 3.01
1220 1569 1.072331 GTTCCCCTCTTGCTCAGTTCA 59.928 52.381 0.00 0.00 0.00 3.18
1221 1570 0.979665 TCCCCTCTTGCTCAGTTCAG 59.020 55.000 0.00 0.00 0.00 3.02
1222 1571 0.979665 CCCCTCTTGCTCAGTTCAGA 59.020 55.000 0.00 0.00 0.00 3.27
1223 1572 1.066286 CCCCTCTTGCTCAGTTCAGAG 60.066 57.143 0.00 0.00 38.68 3.35
1224 1573 1.622811 CCCTCTTGCTCAGTTCAGAGT 59.377 52.381 0.00 0.00 37.94 3.24
1225 1574 2.038295 CCCTCTTGCTCAGTTCAGAGTT 59.962 50.000 0.00 0.00 37.94 3.01
1226 1575 3.495806 CCCTCTTGCTCAGTTCAGAGTTT 60.496 47.826 0.00 0.00 37.94 2.66
1227 1576 3.745458 CCTCTTGCTCAGTTCAGAGTTTC 59.255 47.826 0.00 0.00 37.94 2.78
1228 1577 4.375272 CTCTTGCTCAGTTCAGAGTTTCA 58.625 43.478 0.00 0.00 37.94 2.69
1229 1578 4.375272 TCTTGCTCAGTTCAGAGTTTCAG 58.625 43.478 0.00 0.00 37.94 3.02
1230 1579 4.100035 TCTTGCTCAGTTCAGAGTTTCAGA 59.900 41.667 0.00 0.00 37.94 3.27
1231 1580 3.722147 TGCTCAGTTCAGAGTTTCAGAC 58.278 45.455 0.00 0.00 37.94 3.51
1232 1581 3.386078 TGCTCAGTTCAGAGTTTCAGACT 59.614 43.478 0.00 0.00 42.70 3.24
1233 1582 4.141846 TGCTCAGTTCAGAGTTTCAGACTT 60.142 41.667 0.00 0.00 39.19 3.01
1234 1583 4.447389 GCTCAGTTCAGAGTTTCAGACTTC 59.553 45.833 0.00 0.00 39.19 3.01
1235 1584 5.595885 CTCAGTTCAGAGTTTCAGACTTCA 58.404 41.667 0.00 0.00 39.19 3.02
1236 1585 5.595885 TCAGTTCAGAGTTTCAGACTTCAG 58.404 41.667 0.00 0.00 39.19 3.02
1262 1611 4.562757 CCGAGAGCTAGAGTGCTAGATAGT 60.563 50.000 4.23 0.00 43.03 2.12
1263 1612 4.994852 CGAGAGCTAGAGTGCTAGATAGTT 59.005 45.833 4.23 0.00 43.03 2.24
1264 1613 5.120208 CGAGAGCTAGAGTGCTAGATAGTTC 59.880 48.000 4.23 0.00 43.03 3.01
1265 1614 6.187727 AGAGCTAGAGTGCTAGATAGTTCT 57.812 41.667 4.23 0.00 43.03 3.01
1266 1615 6.601332 AGAGCTAGAGTGCTAGATAGTTCTT 58.399 40.000 4.23 0.00 43.03 2.52
1267 1616 7.741785 AGAGCTAGAGTGCTAGATAGTTCTTA 58.258 38.462 4.23 0.00 43.03 2.10
1268 1617 7.878127 AGAGCTAGAGTGCTAGATAGTTCTTAG 59.122 40.741 4.23 0.00 43.03 2.18
1301 1650 1.376424 CATGGCCGCTCAGTTGAGT 60.376 57.895 10.57 0.00 43.85 3.41
1369 1718 3.760035 ACGTTCGGGCAGATCGCT 61.760 61.111 16.16 3.47 43.69 4.93
1443 2390 5.890419 CCCCATTTATTCAGCTTCTTCTTCT 59.110 40.000 0.00 0.00 0.00 2.85
1444 2391 6.379417 CCCCATTTATTCAGCTTCTTCTTCTT 59.621 38.462 0.00 0.00 0.00 2.52
1445 2392 7.416101 CCCCATTTATTCAGCTTCTTCTTCTTC 60.416 40.741 0.00 0.00 0.00 2.87
1817 2764 0.104120 CCGTCGGCATGATGAGGTAA 59.896 55.000 0.00 0.00 35.48 2.85
1819 2766 2.483876 CGTCGGCATGATGAGGTAAAT 58.516 47.619 0.00 0.00 35.48 1.40
1823 2770 3.646162 TCGGCATGATGAGGTAAATAGGT 59.354 43.478 0.00 0.00 0.00 3.08
1824 2771 3.748048 CGGCATGATGAGGTAAATAGGTG 59.252 47.826 0.00 0.00 0.00 4.00
1853 2800 3.727970 GCGAAATCTCCGGTGATTTTCAC 60.728 47.826 33.46 24.52 43.97 3.18
1865 2812 0.447801 ATTTTCACGCGTCATGCTCC 59.552 50.000 9.86 0.00 43.27 4.70
1866 2813 1.573829 TTTTCACGCGTCATGCTCCC 61.574 55.000 9.86 0.00 43.27 4.30
1899 2847 2.361757 TGTGCCATTTCTCCTTGTGTTG 59.638 45.455 0.00 0.00 0.00 3.33
1906 2854 1.967319 TCTCCTTGTGTTGTTCTGGC 58.033 50.000 0.00 0.00 0.00 4.85
1923 2871 2.028876 TGGCTTGGAGATCGTTCGATA 58.971 47.619 7.69 0.00 0.00 2.92
1924 2872 2.223735 TGGCTTGGAGATCGTTCGATAC 60.224 50.000 7.69 5.70 0.00 2.24
1925 2873 2.034812 GGCTTGGAGATCGTTCGATACT 59.965 50.000 7.69 7.15 0.00 2.12
1926 2874 3.491104 GGCTTGGAGATCGTTCGATACTT 60.491 47.826 7.69 0.00 0.00 2.24
1927 2875 3.731717 GCTTGGAGATCGTTCGATACTTC 59.268 47.826 7.69 6.79 0.00 3.01
1928 2876 3.604065 TGGAGATCGTTCGATACTTCG 57.396 47.619 7.69 0.00 46.87 3.79
1946 2894 6.229561 ACTTCGATTGACTGTTTTTCTAGC 57.770 37.500 0.00 0.00 0.00 3.42
1947 2895 4.903638 TCGATTGACTGTTTTTCTAGCG 57.096 40.909 0.00 0.00 0.00 4.26
1953 2901 0.865769 CTGTTTTTCTAGCGGCGTGT 59.134 50.000 9.37 0.00 0.00 4.49
1955 2903 0.584876 GTTTTTCTAGCGGCGTGTGT 59.415 50.000 9.37 0.00 0.00 3.72
1980 2931 9.582431 GTATTGTCTACTAGTTTGCTTGATGTA 57.418 33.333 0.00 0.00 0.00 2.29
2044 3004 2.009774 GACTTATGCAAGCGGTGATGT 58.990 47.619 0.00 0.00 34.94 3.06
2060 3020 5.237996 CGGTGATGTATTTGATGATTGCTCT 59.762 40.000 0.00 0.00 0.00 4.09
2064 3024 9.049523 GTGATGTATTTGATGATTGCTCTAGAA 57.950 33.333 0.00 0.00 0.00 2.10
2069 3029 9.973450 GTATTTGATGATTGCTCTAGAAGTAGA 57.027 33.333 0.00 0.00 33.96 2.59
2078 3038 8.950208 ATTGCTCTAGAAGTAGATAAACAACC 57.050 34.615 0.00 0.00 34.63 3.77
2081 3041 9.251440 TGCTCTAGAAGTAGATAAACAACCTAA 57.749 33.333 0.00 0.00 34.63 2.69
2084 3044 9.765295 TCTAGAAGTAGATAAACAACCTAAGGT 57.235 33.333 0.00 0.00 31.01 3.50
2085 3045 9.804758 CTAGAAGTAGATAAACAACCTAAGGTG 57.195 37.037 0.00 0.00 35.34 4.00
2086 3046 8.431910 AGAAGTAGATAAACAACCTAAGGTGA 57.568 34.615 0.00 0.00 35.34 4.02
2087 3047 9.047947 AGAAGTAGATAAACAACCTAAGGTGAT 57.952 33.333 0.00 0.00 35.34 3.06
2088 3048 9.668497 GAAGTAGATAAACAACCTAAGGTGATT 57.332 33.333 0.00 0.00 35.34 2.57
2116 3076 3.713826 ACCGCATTTCCTTTCCTCTTA 57.286 42.857 0.00 0.00 0.00 2.10
2118 3078 2.683362 CCGCATTTCCTTTCCTCTTACC 59.317 50.000 0.00 0.00 0.00 2.85
2122 3082 4.396478 GCATTTCCTTTCCTCTTACCTGTC 59.604 45.833 0.00 0.00 0.00 3.51
2143 3103 1.795286 GAGACGACCTCTTGTGCAAAG 59.205 52.381 0.00 0.00 38.86 2.77
2159 3119 5.468746 TGTGCAAAGGTCTTATTGACTACAC 59.531 40.000 0.00 0.00 44.74 2.90
2160 3120 5.701290 GTGCAAAGGTCTTATTGACTACACT 59.299 40.000 0.00 0.00 44.74 3.55
2161 3121 6.872020 GTGCAAAGGTCTTATTGACTACACTA 59.128 38.462 0.00 0.00 44.74 2.74
2166 3126 7.425224 AGGTCTTATTGACTACACTAGCAAT 57.575 36.000 0.00 0.00 44.74 3.56
2167 3127 7.268586 AGGTCTTATTGACTACACTAGCAATG 58.731 38.462 0.00 0.00 44.74 2.82
2168 3128 7.042335 GGTCTTATTGACTACACTAGCAATGT 58.958 38.462 0.00 0.00 44.74 2.71
2169 3129 7.010552 GGTCTTATTGACTACACTAGCAATGTG 59.989 40.741 0.00 2.87 44.74 3.21
2170 3130 6.535150 TCTTATTGACTACACTAGCAATGTGC 59.465 38.462 0.00 0.00 45.46 4.57
2171 3131 2.972625 TGACTACACTAGCAATGTGCC 58.027 47.619 0.00 0.00 46.52 5.01
2172 3132 2.280628 GACTACACTAGCAATGTGCCC 58.719 52.381 0.00 0.00 46.52 5.36
2173 3133 1.628340 ACTACACTAGCAATGTGCCCA 59.372 47.619 0.00 0.00 46.52 5.36
2174 3134 2.239654 ACTACACTAGCAATGTGCCCAT 59.760 45.455 0.00 0.00 46.52 4.00
2175 3135 1.466856 ACACTAGCAATGTGCCCATG 58.533 50.000 0.00 0.00 46.52 3.66
2176 3136 1.272092 ACACTAGCAATGTGCCCATGT 60.272 47.619 0.00 0.00 46.52 3.21
2177 3137 1.133598 CACTAGCAATGTGCCCATGTG 59.866 52.381 0.00 0.00 46.52 3.21
2178 3138 1.272092 ACTAGCAATGTGCCCATGTGT 60.272 47.619 0.00 0.00 46.52 3.72
2179 3139 1.820519 CTAGCAATGTGCCCATGTGTT 59.179 47.619 0.00 0.00 46.52 3.32
2180 3140 0.319083 AGCAATGTGCCCATGTGTTG 59.681 50.000 0.00 0.00 46.52 3.33
2181 3141 1.293267 GCAATGTGCCCATGTGTTGC 61.293 55.000 0.00 0.00 37.42 4.17
2182 3142 0.033642 CAATGTGCCCATGTGTTGCA 59.966 50.000 0.00 0.00 0.00 4.08
2183 3143 0.757512 AATGTGCCCATGTGTTGCAA 59.242 45.000 0.00 0.00 36.65 4.08
2184 3144 0.978151 ATGTGCCCATGTGTTGCAAT 59.022 45.000 0.59 0.00 36.65 3.56
2185 3145 0.033642 TGTGCCCATGTGTTGCAATG 59.966 50.000 0.59 0.00 36.65 2.82
2186 3146 0.671163 GTGCCCATGTGTTGCAATGG 60.671 55.000 0.59 6.07 36.65 3.16
2187 3147 0.830866 TGCCCATGTGTTGCAATGGA 60.831 50.000 16.72 0.00 36.31 3.41
2188 3148 0.538118 GCCCATGTGTTGCAATGGAT 59.462 50.000 16.72 0.38 36.31 3.41
2189 3149 1.472026 GCCCATGTGTTGCAATGGATC 60.472 52.381 16.72 5.98 36.31 3.36
2190 3150 1.137479 CCCATGTGTTGCAATGGATCC 59.863 52.381 16.72 4.20 36.31 3.36
2191 3151 1.826096 CCATGTGTTGCAATGGATCCA 59.174 47.619 18.88 18.88 36.31 3.41
2192 3152 2.234168 CCATGTGTTGCAATGGATCCAA 59.766 45.455 20.67 0.00 36.31 3.53
2193 3153 3.306849 CCATGTGTTGCAATGGATCCAAA 60.307 43.478 20.67 5.39 36.31 3.28
2194 3154 4.316645 CATGTGTTGCAATGGATCCAAAA 58.683 39.130 20.67 8.42 0.00 2.44
2195 3155 4.620589 TGTGTTGCAATGGATCCAAAAT 57.379 36.364 20.67 5.30 0.00 1.82
2196 3156 5.735285 TGTGTTGCAATGGATCCAAAATA 57.265 34.783 20.67 6.84 0.00 1.40
2197 3157 5.722263 TGTGTTGCAATGGATCCAAAATAG 58.278 37.500 20.67 8.13 0.00 1.73
2198 3158 5.479724 TGTGTTGCAATGGATCCAAAATAGA 59.520 36.000 20.67 5.55 0.00 1.98
2199 3159 6.014755 TGTGTTGCAATGGATCCAAAATAGAA 60.015 34.615 20.67 4.42 0.00 2.10
2200 3160 7.043565 GTGTTGCAATGGATCCAAAATAGAAT 58.956 34.615 20.67 0.00 0.00 2.40
2201 3161 8.196771 GTGTTGCAATGGATCCAAAATAGAATA 58.803 33.333 20.67 3.00 0.00 1.75
2202 3162 8.756927 TGTTGCAATGGATCCAAAATAGAATAA 58.243 29.630 20.67 2.28 0.00 1.40
2203 3163 9.768662 GTTGCAATGGATCCAAAATAGAATAAT 57.231 29.630 20.67 0.00 0.00 1.28
2227 3187 9.868277 AATACATGTTCACAAACTTGAAAGAAA 57.132 25.926 2.30 0.00 40.97 2.52
2228 3188 9.868277 ATACATGTTCACAAACTTGAAAGAAAA 57.132 25.926 2.30 0.00 40.97 2.29
2229 3189 8.600449 ACATGTTCACAAACTTGAAAGAAAAA 57.400 26.923 10.12 0.00 40.97 1.94
2230 3190 8.495148 ACATGTTCACAAACTTGAAAGAAAAAC 58.505 29.630 10.12 0.00 40.97 2.43
2231 3191 8.494347 CATGTTCACAAACTTGAAAGAAAAACA 58.506 29.630 0.00 0.00 40.97 2.83
2232 3192 7.846485 TGTTCACAAACTTGAAAGAAAAACAC 58.154 30.769 0.00 0.00 37.24 3.32
2233 3193 7.708752 TGTTCACAAACTTGAAAGAAAAACACT 59.291 29.630 0.00 0.00 37.24 3.55
2234 3194 7.867445 TCACAAACTTGAAAGAAAAACACTC 57.133 32.000 0.00 0.00 0.00 3.51
2235 3195 7.657336 TCACAAACTTGAAAGAAAAACACTCT 58.343 30.769 0.00 0.00 0.00 3.24
2236 3196 8.788806 TCACAAACTTGAAAGAAAAACACTCTA 58.211 29.630 0.00 0.00 0.00 2.43
2237 3197 9.065871 CACAAACTTGAAAGAAAAACACTCTAG 57.934 33.333 0.00 0.00 0.00 2.43
2238 3198 8.793592 ACAAACTTGAAAGAAAAACACTCTAGT 58.206 29.630 0.00 0.00 0.00 2.57
2239 3199 9.626045 CAAACTTGAAAGAAAAACACTCTAGTT 57.374 29.630 0.00 0.00 34.86 2.24
2241 3201 9.626045 AACTTGAAAGAAAAACACTCTAGTTTG 57.374 29.630 0.00 0.00 40.60 2.93
2242 3202 8.244113 ACTTGAAAGAAAAACACTCTAGTTTGG 58.756 33.333 0.00 0.00 40.60 3.28
2243 3203 6.560711 TGAAAGAAAAACACTCTAGTTTGGC 58.439 36.000 0.00 0.00 40.60 4.52
2244 3204 4.813296 AGAAAAACACTCTAGTTTGGCG 57.187 40.909 0.00 0.00 40.60 5.69
2245 3205 4.196971 AGAAAAACACTCTAGTTTGGCGT 58.803 39.130 0.00 0.00 40.60 5.68
2246 3206 5.362263 AGAAAAACACTCTAGTTTGGCGTA 58.638 37.500 0.00 0.00 40.60 4.42
2247 3207 5.995897 AGAAAAACACTCTAGTTTGGCGTAT 59.004 36.000 0.00 0.00 40.60 3.06
2248 3208 7.156673 AGAAAAACACTCTAGTTTGGCGTATA 58.843 34.615 0.00 0.00 40.60 1.47
2249 3209 7.822822 AGAAAAACACTCTAGTTTGGCGTATAT 59.177 33.333 0.00 0.00 40.60 0.86
2250 3210 9.090692 GAAAAACACTCTAGTTTGGCGTATATA 57.909 33.333 0.00 0.00 40.60 0.86
2251 3211 9.609346 AAAAACACTCTAGTTTGGCGTATATAT 57.391 29.630 0.00 0.00 40.60 0.86
2252 3212 8.813643 AAACACTCTAGTTTGGCGTATATATC 57.186 34.615 0.00 0.00 40.03 1.63
2253 3213 7.520451 ACACTCTAGTTTGGCGTATATATCA 57.480 36.000 0.00 0.00 0.00 2.15
2254 3214 7.368833 ACACTCTAGTTTGGCGTATATATCAC 58.631 38.462 0.00 0.00 0.00 3.06
2255 3215 7.230913 ACACTCTAGTTTGGCGTATATATCACT 59.769 37.037 0.00 0.00 0.00 3.41
2256 3216 8.727910 CACTCTAGTTTGGCGTATATATCACTA 58.272 37.037 0.00 0.00 0.00 2.74
2257 3217 9.293404 ACTCTAGTTTGGCGTATATATCACTAA 57.707 33.333 0.00 0.00 0.00 2.24
2288 3248 9.886132 ATACTCGTATTAGGTTTCACTCAAAAT 57.114 29.630 0.00 0.00 0.00 1.82
2290 3250 9.886132 ACTCGTATTAGGTTTCACTCAAAATAT 57.114 29.630 0.00 0.00 0.00 1.28
2299 3259 9.533831 AGGTTTCACTCAAAATATATTCCTTGT 57.466 29.630 0.00 0.00 0.00 3.16
2300 3260 9.573133 GGTTTCACTCAAAATATATTCCTTGTG 57.427 33.333 0.00 4.75 0.00 3.33
2301 3261 9.573133 GTTTCACTCAAAATATATTCCTTGTGG 57.427 33.333 12.90 8.88 0.00 4.17
2302 3262 7.333528 TCACTCAAAATATATTCCTTGTGGC 57.666 36.000 12.90 0.00 0.00 5.01
2303 3263 7.118723 TCACTCAAAATATATTCCTTGTGGCT 58.881 34.615 12.90 0.00 0.00 4.75
2304 3264 7.067372 TCACTCAAAATATATTCCTTGTGGCTG 59.933 37.037 12.90 6.58 0.00 4.85
2305 3265 6.891908 ACTCAAAATATATTCCTTGTGGCTGT 59.108 34.615 12.90 4.60 0.00 4.40
2306 3266 7.397192 ACTCAAAATATATTCCTTGTGGCTGTT 59.603 33.333 12.90 0.00 0.00 3.16
2307 3267 8.133024 TCAAAATATATTCCTTGTGGCTGTTT 57.867 30.769 0.00 0.00 0.00 2.83
2308 3268 8.034215 TCAAAATATATTCCTTGTGGCTGTTTG 58.966 33.333 0.00 0.00 0.00 2.93
2309 3269 6.469782 AATATATTCCTTGTGGCTGTTTGG 57.530 37.500 0.00 0.00 0.00 3.28
2310 3270 2.380064 ATTCCTTGTGGCTGTTTGGA 57.620 45.000 0.00 0.00 0.00 3.53
2311 3271 2.380064 TTCCTTGTGGCTGTTTGGAT 57.620 45.000 0.00 0.00 0.00 3.41
2312 3272 1.619654 TCCTTGTGGCTGTTTGGATG 58.380 50.000 0.00 0.00 0.00 3.51
2313 3273 1.144708 TCCTTGTGGCTGTTTGGATGA 59.855 47.619 0.00 0.00 0.00 2.92
2314 3274 1.542915 CCTTGTGGCTGTTTGGATGAG 59.457 52.381 0.00 0.00 0.00 2.90
2315 3275 1.542915 CTTGTGGCTGTTTGGATGAGG 59.457 52.381 0.00 0.00 0.00 3.86
2316 3276 0.478072 TGTGGCTGTTTGGATGAGGT 59.522 50.000 0.00 0.00 0.00 3.85
2317 3277 0.883833 GTGGCTGTTTGGATGAGGTG 59.116 55.000 0.00 0.00 0.00 4.00
2318 3278 0.251297 TGGCTGTTTGGATGAGGTGG 60.251 55.000 0.00 0.00 0.00 4.61
2319 3279 1.598701 GGCTGTTTGGATGAGGTGGC 61.599 60.000 0.00 0.00 0.00 5.01
2320 3280 1.926511 GCTGTTTGGATGAGGTGGCG 61.927 60.000 0.00 0.00 0.00 5.69
2321 3281 0.606401 CTGTTTGGATGAGGTGGCGT 60.606 55.000 0.00 0.00 0.00 5.68
2322 3282 0.687920 TGTTTGGATGAGGTGGCGTA 59.312 50.000 0.00 0.00 0.00 4.42
2323 3283 1.280710 TGTTTGGATGAGGTGGCGTAT 59.719 47.619 0.00 0.00 0.00 3.06
2324 3284 2.502130 TGTTTGGATGAGGTGGCGTATA 59.498 45.455 0.00 0.00 0.00 1.47
2325 3285 3.135712 TGTTTGGATGAGGTGGCGTATAT 59.864 43.478 0.00 0.00 0.00 0.86
2326 3286 4.345547 TGTTTGGATGAGGTGGCGTATATA 59.654 41.667 0.00 0.00 0.00 0.86
2327 3287 5.012664 TGTTTGGATGAGGTGGCGTATATAT 59.987 40.000 0.00 0.00 0.00 0.86
2328 3288 5.339008 TTGGATGAGGTGGCGTATATATC 57.661 43.478 0.00 0.00 0.00 1.63
2329 3289 4.349365 TGGATGAGGTGGCGTATATATCA 58.651 43.478 0.00 0.00 0.00 2.15
2330 3290 4.159693 TGGATGAGGTGGCGTATATATCAC 59.840 45.833 0.00 0.00 0.00 3.06
2331 3291 4.402793 GGATGAGGTGGCGTATATATCACT 59.597 45.833 11.15 0.00 0.00 3.41
2332 3292 5.593095 GGATGAGGTGGCGTATATATCACTA 59.407 44.000 11.15 3.30 0.00 2.74
2333 3293 6.096423 GGATGAGGTGGCGTATATATCACTAA 59.904 42.308 11.15 2.55 0.00 2.24
2334 3294 6.904463 TGAGGTGGCGTATATATCACTAAA 57.096 37.500 11.15 0.20 0.00 1.85
2335 3295 7.292713 TGAGGTGGCGTATATATCACTAAAA 57.707 36.000 11.15 0.00 0.00 1.52
2336 3296 7.728148 TGAGGTGGCGTATATATCACTAAAAA 58.272 34.615 11.15 0.00 0.00 1.94
2337 3297 8.372459 TGAGGTGGCGTATATATCACTAAAAAT 58.628 33.333 11.15 0.00 0.00 1.82
2338 3298 9.865321 GAGGTGGCGTATATATCACTAAAAATA 57.135 33.333 11.15 0.00 0.00 1.40
2364 3324 9.886132 ATACTCGTATTAGGTTTCACTCAAAAT 57.114 29.630 0.00 0.00 0.00 1.82
2366 3326 9.886132 ACTCGTATTAGGTTTCACTCAAAATAT 57.114 29.630 0.00 0.00 0.00 1.28
2378 3338 9.638239 TTTCACTCAAAATATATTTCTTGTGGC 57.362 29.630 22.67 0.00 0.00 5.01
2379 3339 8.579850 TCACTCAAAATATATTTCTTGTGGCT 57.420 30.769 22.67 4.28 0.00 4.75
2380 3340 8.461222 TCACTCAAAATATATTTCTTGTGGCTG 58.539 33.333 22.67 12.88 0.00 4.85
2381 3341 8.246180 CACTCAAAATATATTTCTTGTGGCTGT 58.754 33.333 11.08 4.40 0.00 4.40
2382 3342 8.806146 ACTCAAAATATATTTCTTGTGGCTGTT 58.194 29.630 11.08 0.00 0.00 3.16
2383 3343 9.643693 CTCAAAATATATTTCTTGTGGCTGTTT 57.356 29.630 11.08 0.00 0.00 2.83
2384 3344 9.421806 TCAAAATATATTTCTTGTGGCTGTTTG 57.578 29.630 11.08 2.03 0.00 2.93
2385 3345 8.658609 CAAAATATATTTCTTGTGGCTGTTTGG 58.341 33.333 11.08 0.00 0.00 3.28
2386 3346 7.716799 AATATATTTCTTGTGGCTGTTTGGA 57.283 32.000 0.00 0.00 0.00 3.53
2387 3347 7.902920 ATATATTTCTTGTGGCTGTTTGGAT 57.097 32.000 0.00 0.00 0.00 3.41
2388 3348 3.731652 TTTCTTGTGGCTGTTTGGATG 57.268 42.857 0.00 0.00 0.00 3.51
2389 3349 2.655090 TCTTGTGGCTGTTTGGATGA 57.345 45.000 0.00 0.00 0.00 2.92
2390 3350 2.507484 TCTTGTGGCTGTTTGGATGAG 58.493 47.619 0.00 0.00 0.00 2.90
2391 3351 1.542915 CTTGTGGCTGTTTGGATGAGG 59.457 52.381 0.00 0.00 0.00 3.86
2392 3352 0.478072 TGTGGCTGTTTGGATGAGGT 59.522 50.000 0.00 0.00 0.00 3.85
2393 3353 0.883833 GTGGCTGTTTGGATGAGGTG 59.116 55.000 0.00 0.00 0.00 4.00
2394 3354 0.251297 TGGCTGTTTGGATGAGGTGG 60.251 55.000 0.00 0.00 0.00 4.61
2395 3355 0.967380 GGCTGTTTGGATGAGGTGGG 60.967 60.000 0.00 0.00 0.00 4.61
2396 3356 0.967380 GCTGTTTGGATGAGGTGGGG 60.967 60.000 0.00 0.00 0.00 4.96
2397 3357 0.323725 CTGTTTGGATGAGGTGGGGG 60.324 60.000 0.00 0.00 0.00 5.40
2398 3358 0.774096 TGTTTGGATGAGGTGGGGGA 60.774 55.000 0.00 0.00 0.00 4.81
2399 3359 0.034089 GTTTGGATGAGGTGGGGGAG 60.034 60.000 0.00 0.00 0.00 4.30
2400 3360 1.214305 TTTGGATGAGGTGGGGGAGG 61.214 60.000 0.00 0.00 0.00 4.30
2401 3361 2.774351 GGATGAGGTGGGGGAGGG 60.774 72.222 0.00 0.00 0.00 4.30
2402 3362 2.372688 GATGAGGTGGGGGAGGGA 59.627 66.667 0.00 0.00 0.00 4.20
2403 3363 1.073397 GATGAGGTGGGGGAGGGAT 60.073 63.158 0.00 0.00 0.00 3.85
2404 3364 1.386485 ATGAGGTGGGGGAGGGATG 60.386 63.158 0.00 0.00 0.00 3.51
2405 3365 2.042930 GAGGTGGGGGAGGGATGT 59.957 66.667 0.00 0.00 0.00 3.06
2406 3366 2.286425 AGGTGGGGGAGGGATGTG 60.286 66.667 0.00 0.00 0.00 3.21
2407 3367 3.420482 GGTGGGGGAGGGATGTGG 61.420 72.222 0.00 0.00 0.00 4.17
2408 3368 2.614013 GTGGGGGAGGGATGTGGT 60.614 66.667 0.00 0.00 0.00 4.16
2409 3369 2.212761 TGGGGGAGGGATGTGGTT 59.787 61.111 0.00 0.00 0.00 3.67
2410 3370 2.237965 TGGGGGAGGGATGTGGTTG 61.238 63.158 0.00 0.00 0.00 3.77
2411 3371 1.928567 GGGGGAGGGATGTGGTTGA 60.929 63.158 0.00 0.00 0.00 3.18
2412 3372 1.289244 GGGGGAGGGATGTGGTTGAT 61.289 60.000 0.00 0.00 0.00 2.57
2413 3373 0.631212 GGGGAGGGATGTGGTTGATT 59.369 55.000 0.00 0.00 0.00 2.57
2414 3374 1.686115 GGGGAGGGATGTGGTTGATTG 60.686 57.143 0.00 0.00 0.00 2.67
2415 3375 1.686115 GGGAGGGATGTGGTTGATTGG 60.686 57.143 0.00 0.00 0.00 3.16
2416 3376 1.005924 GGAGGGATGTGGTTGATTGGT 59.994 52.381 0.00 0.00 0.00 3.67
2417 3377 2.557452 GGAGGGATGTGGTTGATTGGTT 60.557 50.000 0.00 0.00 0.00 3.67
2418 3378 3.165071 GAGGGATGTGGTTGATTGGTTT 58.835 45.455 0.00 0.00 0.00 3.27
2419 3379 3.165071 AGGGATGTGGTTGATTGGTTTC 58.835 45.455 0.00 0.00 0.00 2.78
2420 3380 2.896685 GGGATGTGGTTGATTGGTTTCA 59.103 45.455 0.00 0.00 0.00 2.69
2421 3381 3.323403 GGGATGTGGTTGATTGGTTTCAA 59.677 43.478 0.00 0.00 37.28 2.69
2422 3382 4.559153 GGATGTGGTTGATTGGTTTCAAG 58.441 43.478 0.00 0.00 36.34 3.02
2423 3383 4.280677 GGATGTGGTTGATTGGTTTCAAGA 59.719 41.667 0.00 0.00 36.34 3.02
2424 3384 5.047092 GGATGTGGTTGATTGGTTTCAAGAT 60.047 40.000 0.00 0.00 36.34 2.40
2425 3385 6.152661 GGATGTGGTTGATTGGTTTCAAGATA 59.847 38.462 0.00 0.00 36.34 1.98
2426 3386 6.325919 TGTGGTTGATTGGTTTCAAGATAC 57.674 37.500 0.00 0.00 36.34 2.24
2427 3387 6.068010 TGTGGTTGATTGGTTTCAAGATACT 58.932 36.000 0.00 0.00 36.34 2.12
2428 3388 7.227873 TGTGGTTGATTGGTTTCAAGATACTA 58.772 34.615 0.00 0.00 36.34 1.82
2429 3389 7.721842 TGTGGTTGATTGGTTTCAAGATACTAA 59.278 33.333 0.00 0.00 36.34 2.24
2430 3390 8.237267 GTGGTTGATTGGTTTCAAGATACTAAG 58.763 37.037 0.00 0.00 36.34 2.18
2431 3391 7.393234 TGGTTGATTGGTTTCAAGATACTAAGG 59.607 37.037 0.00 0.00 36.34 2.69
2432 3392 7.148069 GGTTGATTGGTTTCAAGATACTAAGGG 60.148 40.741 0.00 0.00 36.34 3.95
2433 3393 6.423182 TGATTGGTTTCAAGATACTAAGGGG 58.577 40.000 0.00 0.00 36.19 4.79
2434 3394 5.853572 TTGGTTTCAAGATACTAAGGGGT 57.146 39.130 0.00 0.00 0.00 4.95
2435 3395 5.853572 TGGTTTCAAGATACTAAGGGGTT 57.146 39.130 0.00 0.00 0.00 4.11
2436 3396 6.208840 TGGTTTCAAGATACTAAGGGGTTT 57.791 37.500 0.00 0.00 0.00 3.27
2437 3397 6.243148 TGGTTTCAAGATACTAAGGGGTTTC 58.757 40.000 0.00 0.00 0.00 2.78
2438 3398 6.045106 TGGTTTCAAGATACTAAGGGGTTTCT 59.955 38.462 0.00 0.00 0.00 2.52
2439 3399 6.374613 GGTTTCAAGATACTAAGGGGTTTCTG 59.625 42.308 0.00 0.00 30.31 3.02
2440 3400 5.099042 TCAAGATACTAAGGGGTTTCTGC 57.901 43.478 0.00 0.00 30.31 4.26
2441 3401 4.534500 TCAAGATACTAAGGGGTTTCTGCA 59.466 41.667 0.00 0.00 30.31 4.41
2442 3402 5.013704 TCAAGATACTAAGGGGTTTCTGCAA 59.986 40.000 0.00 0.00 30.31 4.08
2443 3403 5.514500 AGATACTAAGGGGTTTCTGCAAA 57.486 39.130 0.00 0.00 0.00 3.68
2444 3404 5.887754 AGATACTAAGGGGTTTCTGCAAAA 58.112 37.500 0.00 0.00 0.00 2.44
2445 3405 6.494059 AGATACTAAGGGGTTTCTGCAAAAT 58.506 36.000 0.00 0.00 0.00 1.82
2446 3406 4.871933 ACTAAGGGGTTTCTGCAAAATG 57.128 40.909 0.00 0.00 0.00 2.32
2447 3407 4.479158 ACTAAGGGGTTTCTGCAAAATGA 58.521 39.130 0.00 0.00 0.00 2.57
2448 3408 3.751479 AAGGGGTTTCTGCAAAATGAC 57.249 42.857 0.00 0.00 0.00 3.06
2449 3409 1.613437 AGGGGTTTCTGCAAAATGACG 59.387 47.619 0.00 0.00 0.00 4.35
2450 3410 1.611491 GGGGTTTCTGCAAAATGACGA 59.389 47.619 0.00 0.00 0.00 4.20
2451 3411 2.035321 GGGGTTTCTGCAAAATGACGAA 59.965 45.455 0.00 0.00 0.00 3.85
2452 3412 3.306019 GGGGTTTCTGCAAAATGACGAAT 60.306 43.478 0.00 0.00 0.00 3.34
2453 3413 3.674753 GGGTTTCTGCAAAATGACGAATG 59.325 43.478 0.00 0.00 0.00 2.67
2454 3414 4.545610 GGTTTCTGCAAAATGACGAATGA 58.454 39.130 0.00 0.00 0.00 2.57
2455 3415 5.163513 GGTTTCTGCAAAATGACGAATGAT 58.836 37.500 0.00 0.00 0.00 2.45
2456 3416 6.321717 GGTTTCTGCAAAATGACGAATGATA 58.678 36.000 0.00 0.00 0.00 2.15
2457 3417 6.470235 GGTTTCTGCAAAATGACGAATGATAG 59.530 38.462 0.00 0.00 0.00 2.08
2458 3418 6.983474 TTCTGCAAAATGACGAATGATAGA 57.017 33.333 0.00 0.00 0.00 1.98
2459 3419 6.349973 TCTGCAAAATGACGAATGATAGAC 57.650 37.500 0.00 0.00 0.00 2.59
2460 3420 5.005682 TCTGCAAAATGACGAATGATAGACG 59.994 40.000 0.00 0.00 0.00 4.18
2461 3421 3.962481 GCAAAATGACGAATGATAGACGC 59.038 43.478 0.00 0.00 0.00 5.19
2462 3422 4.494035 GCAAAATGACGAATGATAGACGCA 60.494 41.667 0.00 0.00 0.00 5.24
2463 3423 4.778842 AAATGACGAATGATAGACGCAC 57.221 40.909 0.00 0.00 0.00 5.34
2464 3424 2.203800 TGACGAATGATAGACGCACC 57.796 50.000 0.00 0.00 0.00 5.01
2465 3425 1.474879 TGACGAATGATAGACGCACCA 59.525 47.619 0.00 0.00 0.00 4.17
2466 3426 2.100749 TGACGAATGATAGACGCACCAT 59.899 45.455 0.00 0.00 0.00 3.55
2467 3427 2.726760 GACGAATGATAGACGCACCATC 59.273 50.000 0.00 0.00 0.00 3.51
2468 3428 2.100749 ACGAATGATAGACGCACCATCA 59.899 45.455 0.00 0.00 33.47 3.07
2469 3429 3.243873 ACGAATGATAGACGCACCATCAT 60.244 43.478 0.00 0.00 40.31 2.45
2470 3430 3.366121 CGAATGATAGACGCACCATCATC 59.634 47.826 5.09 0.00 38.21 2.92
2471 3431 4.309933 GAATGATAGACGCACCATCATCA 58.690 43.478 5.09 0.00 38.21 3.07
2472 3432 4.548451 ATGATAGACGCACCATCATCAT 57.452 40.909 0.00 0.00 35.03 2.45
2473 3433 3.917988 TGATAGACGCACCATCATCATC 58.082 45.455 0.00 0.00 0.00 2.92
2474 3434 3.321682 TGATAGACGCACCATCATCATCA 59.678 43.478 0.00 0.00 0.00 3.07
2475 3435 2.696989 AGACGCACCATCATCATCAA 57.303 45.000 0.00 0.00 0.00 2.57
2476 3436 2.283298 AGACGCACCATCATCATCAAC 58.717 47.619 0.00 0.00 0.00 3.18
2477 3437 2.093288 AGACGCACCATCATCATCAACT 60.093 45.455 0.00 0.00 0.00 3.16
2478 3438 2.011947 ACGCACCATCATCATCAACTG 58.988 47.619 0.00 0.00 0.00 3.16
2479 3439 2.282407 CGCACCATCATCATCAACTGA 58.718 47.619 0.00 0.00 38.53 3.41
2480 3440 2.287103 CGCACCATCATCATCAACTGAG 59.713 50.000 0.00 0.00 37.28 3.35
2481 3441 3.276857 GCACCATCATCATCAACTGAGT 58.723 45.455 0.00 0.00 37.28 3.41
2482 3442 3.311871 GCACCATCATCATCAACTGAGTC 59.688 47.826 0.00 0.00 37.28 3.36
2483 3443 4.767478 CACCATCATCATCAACTGAGTCT 58.233 43.478 0.00 0.00 37.28 3.24
2484 3444 5.183969 CACCATCATCATCAACTGAGTCTT 58.816 41.667 0.00 0.00 37.28 3.01
2485 3445 5.646793 CACCATCATCATCAACTGAGTCTTT 59.353 40.000 0.00 0.00 37.28 2.52
2486 3446 6.150641 CACCATCATCATCAACTGAGTCTTTT 59.849 38.462 0.00 0.00 37.28 2.27
2487 3447 7.335171 CACCATCATCATCAACTGAGTCTTTTA 59.665 37.037 0.00 0.00 37.28 1.52
2488 3448 8.051535 ACCATCATCATCAACTGAGTCTTTTAT 58.948 33.333 0.00 0.00 37.28 1.40
2489 3449 9.551734 CCATCATCATCAACTGAGTCTTTTATA 57.448 33.333 0.00 0.00 37.28 0.98
2491 3451 9.775854 ATCATCATCAACTGAGTCTTTTATAGG 57.224 33.333 0.00 0.00 37.28 2.57
2492 3452 8.981659 TCATCATCAACTGAGTCTTTTATAGGA 58.018 33.333 0.00 0.00 37.28 2.94
2493 3453 9.258826 CATCATCAACTGAGTCTTTTATAGGAG 57.741 37.037 0.00 0.00 37.28 3.69
2494 3454 8.367660 TCATCAACTGAGTCTTTTATAGGAGT 57.632 34.615 0.00 0.00 0.00 3.85
2495 3455 9.475620 TCATCAACTGAGTCTTTTATAGGAGTA 57.524 33.333 0.00 0.00 0.00 2.59
2496 3456 9.743057 CATCAACTGAGTCTTTTATAGGAGTAG 57.257 37.037 0.00 0.00 0.00 2.57
2497 3457 9.702253 ATCAACTGAGTCTTTTATAGGAGTAGA 57.298 33.333 0.00 0.00 0.00 2.59
2498 3458 9.179909 TCAACTGAGTCTTTTATAGGAGTAGAG 57.820 37.037 0.00 0.00 0.00 2.43
2499 3459 9.179909 CAACTGAGTCTTTTATAGGAGTAGAGA 57.820 37.037 0.00 0.00 0.00 3.10
2500 3460 9.756571 AACTGAGTCTTTTATAGGAGTAGAGAA 57.243 33.333 0.00 0.00 0.00 2.87
2501 3461 9.756571 ACTGAGTCTTTTATAGGAGTAGAGAAA 57.243 33.333 0.00 0.00 0.00 2.52
2504 3464 9.471084 GAGTCTTTTATAGGAGTAGAGAAATGC 57.529 37.037 0.00 0.00 0.00 3.56
2505 3465 8.982723 AGTCTTTTATAGGAGTAGAGAAATGCA 58.017 33.333 0.00 0.00 0.00 3.96
2506 3466 9.601217 GTCTTTTATAGGAGTAGAGAAATGCAA 57.399 33.333 0.00 0.00 0.00 4.08
2546 3506 0.869730 TTTTAGCGAAACACCGAGCC 59.130 50.000 0.00 0.00 0.00 4.70
2561 3521 4.445699 GCCCAATAGAGAGGCACG 57.554 61.111 0.00 0.00 46.34 5.34
2562 3522 1.889573 GCCCAATAGAGAGGCACGC 60.890 63.158 0.00 0.00 46.34 5.34
2564 3524 0.107703 CCCAATAGAGAGGCACGCAA 60.108 55.000 0.00 0.00 0.00 4.85
2566 3526 2.292267 CCAATAGAGAGGCACGCAAAT 58.708 47.619 0.00 0.00 0.00 2.32
2569 3529 1.725641 TAGAGAGGCACGCAAATGTG 58.274 50.000 0.00 0.00 42.81 3.21
2594 3554 3.382832 ACCGCGCAGAAGGCTAGT 61.383 61.111 8.75 0.00 41.67 2.57
2609 3569 2.311124 CTAGTTGAGCTTAACCCCGG 57.689 55.000 17.03 0.00 0.00 5.73
2615 3575 1.910671 TGAGCTTAACCCCGGTGTATT 59.089 47.619 0.00 0.00 0.00 1.89
2628 3588 3.253677 CCGGTGTATTAGAGGTGCTCTAG 59.746 52.174 0.00 0.00 42.92 2.43
2631 3591 4.038162 GGTGTATTAGAGGTGCTCTAGTGG 59.962 50.000 0.00 0.00 42.92 4.00
2638 3598 3.055530 AGAGGTGCTCTAGTGGTCAATTG 60.056 47.826 0.00 0.00 39.28 2.32
2643 3603 3.077359 GCTCTAGTGGTCAATTGCTTGT 58.923 45.455 0.00 0.00 33.87 3.16
2648 3608 1.080569 GGTCAATTGCTTGTGCCCG 60.081 57.895 0.00 0.00 38.71 6.13
2706 3666 4.988540 GCAAAACCCATTCCAAGTCTTAAC 59.011 41.667 0.00 0.00 0.00 2.01
2708 3668 5.784578 AAACCCATTCCAAGTCTTAACAC 57.215 39.130 0.00 0.00 0.00 3.32
2709 3669 4.724279 ACCCATTCCAAGTCTTAACACT 57.276 40.909 0.00 0.00 0.00 3.55
2711 3671 6.195600 ACCCATTCCAAGTCTTAACACTAA 57.804 37.500 0.00 0.00 0.00 2.24
2713 3673 5.414765 CCCATTCCAAGTCTTAACACTAACC 59.585 44.000 0.00 0.00 0.00 2.85
2745 5189 4.913376 AGACATGCGCACATTCTAAAATC 58.087 39.130 14.90 0.00 32.87 2.17
2774 5218 1.369625 AATTAAGGACGAAGCAGGCG 58.630 50.000 0.00 0.00 0.00 5.52
2777 5221 2.501223 TAAGGACGAAGCAGGCGGTG 62.501 60.000 0.00 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 2.418368 ATATCCAACAGCAGCGGAAA 57.582 45.000 0.00 0.00 31.18 3.13
147 149 9.924650 TCTCTAATCTTGTTTAGTCTAACAACC 57.075 33.333 0.00 0.00 41.65 3.77
263 476 9.869757 GATATAGTAGTTTTTGCCATTGGTTTT 57.130 29.630 4.26 0.00 0.00 2.43
330 543 9.720769 TTAGGTTTCAAAACTATTCAGGTCTAG 57.279 33.333 0.00 0.00 38.89 2.43
336 549 8.166422 AGTGGTTAGGTTTCAAAACTATTCAG 57.834 34.615 0.00 0.00 38.89 3.02
338 551 9.811995 AAAAGTGGTTAGGTTTCAAAACTATTC 57.188 29.630 0.00 0.00 38.89 1.75
420 635 2.489938 TCCATACTGCCAACTTGTCC 57.510 50.000 0.00 0.00 0.00 4.02
495 710 0.818296 AGCCGACTCGCAGATAAAGT 59.182 50.000 0.00 0.00 33.89 2.66
510 725 0.247736 AGTCTTGGTCTTGCTAGCCG 59.752 55.000 13.29 3.30 0.00 5.52
554 772 5.249393 AGTGGGAAGAACACATTCAGATAGT 59.751 40.000 0.00 0.00 41.21 2.12
556 774 5.762179 AGTGGGAAGAACACATTCAGATA 57.238 39.130 0.00 0.00 41.21 1.98
557 775 4.647564 AGTGGGAAGAACACATTCAGAT 57.352 40.909 0.00 0.00 41.21 2.90
558 776 5.306937 TCTTAGTGGGAAGAACACATTCAGA 59.693 40.000 0.00 0.00 41.21 3.27
559 777 5.551233 TCTTAGTGGGAAGAACACATTCAG 58.449 41.667 0.00 0.00 41.21 3.02
560 778 5.560722 TCTTAGTGGGAAGAACACATTCA 57.439 39.130 0.00 0.00 41.21 2.57
561 779 6.231211 TCTTCTTAGTGGGAAGAACACATTC 58.769 40.000 4.02 0.00 43.90 2.67
562 780 6.187727 TCTTCTTAGTGGGAAGAACACATT 57.812 37.500 4.02 0.00 43.90 2.71
576 818 7.828712 AGTAATACTCGTGCTTTCTTCTTAGT 58.171 34.615 0.00 0.00 0.00 2.24
577 819 8.690680 AAGTAATACTCGTGCTTTCTTCTTAG 57.309 34.615 0.00 0.00 0.00 2.18
581 823 8.408743 ACATAAGTAATACTCGTGCTTTCTTC 57.591 34.615 0.00 0.00 0.00 2.87
582 824 7.491696 GGACATAAGTAATACTCGTGCTTTCTT 59.508 37.037 0.00 0.00 0.00 2.52
583 825 6.979238 GGACATAAGTAATACTCGTGCTTTCT 59.021 38.462 0.00 0.00 0.00 2.52
584 826 6.755141 TGGACATAAGTAATACTCGTGCTTTC 59.245 38.462 0.00 0.00 0.00 2.62
585 827 6.636705 TGGACATAAGTAATACTCGTGCTTT 58.363 36.000 0.00 0.00 0.00 3.51
587 829 5.847111 TGGACATAAGTAATACTCGTGCT 57.153 39.130 0.00 0.00 0.00 4.40
588 830 6.198591 GTCTTGGACATAAGTAATACTCGTGC 59.801 42.308 0.00 0.00 32.09 5.34
590 832 7.094075 TGTGTCTTGGACATAAGTAATACTCGT 60.094 37.037 3.67 0.00 44.63 4.18
605 847 0.883833 CATGCCCTTGTGTCTTGGAC 59.116 55.000 0.00 0.00 0.00 4.02
606 848 0.251297 CCATGCCCTTGTGTCTTGGA 60.251 55.000 0.00 0.00 0.00 3.53
607 849 1.880819 GCCATGCCCTTGTGTCTTGG 61.881 60.000 0.00 0.00 0.00 3.61
608 850 1.588082 GCCATGCCCTTGTGTCTTG 59.412 57.895 0.00 0.00 0.00 3.02
610 852 2.360350 CGCCATGCCCTTGTGTCT 60.360 61.111 0.00 0.00 0.00 3.41
612 854 2.672996 GTCGCCATGCCCTTGTGT 60.673 61.111 0.00 0.00 0.00 3.72
613 855 2.360350 AGTCGCCATGCCCTTGTG 60.360 61.111 0.00 0.00 0.00 3.33
614 856 2.045926 GAGTCGCCATGCCCTTGT 60.046 61.111 0.00 0.00 0.00 3.16
615 857 1.243342 TTTGAGTCGCCATGCCCTTG 61.243 55.000 0.00 0.00 0.00 3.61
616 858 0.962356 CTTTGAGTCGCCATGCCCTT 60.962 55.000 0.00 0.00 0.00 3.95
617 859 1.377725 CTTTGAGTCGCCATGCCCT 60.378 57.895 0.00 0.00 0.00 5.19
618 860 2.409870 CCTTTGAGTCGCCATGCCC 61.410 63.158 0.00 0.00 0.00 5.36
619 861 0.960364 TTCCTTTGAGTCGCCATGCC 60.960 55.000 0.00 0.00 0.00 4.40
620 862 0.881118 TTTCCTTTGAGTCGCCATGC 59.119 50.000 0.00 0.00 0.00 4.06
621 863 3.641437 TTTTTCCTTTGAGTCGCCATG 57.359 42.857 0.00 0.00 0.00 3.66
692 983 5.106157 CGTACATTTGGAGGAAGCAAAAGAT 60.106 40.000 0.00 0.00 0.00 2.40
697 988 3.410631 TCGTACATTTGGAGGAAGCAA 57.589 42.857 0.00 0.00 0.00 3.91
703 994 2.614057 GGATGCTTCGTACATTTGGAGG 59.386 50.000 0.00 0.00 0.00 4.30
710 1001 8.150945 AGTAAATATCTTGGATGCTTCGTACAT 58.849 33.333 0.00 0.00 0.00 2.29
711 1002 7.497595 AGTAAATATCTTGGATGCTTCGTACA 58.502 34.615 0.00 0.00 0.00 2.90
755 1049 1.000607 GTCTTCCAGTGTCACGTAGCA 60.001 52.381 0.00 0.00 0.00 3.49
758 1052 1.611977 CCAGTCTTCCAGTGTCACGTA 59.388 52.381 0.00 0.00 0.00 3.57
759 1053 0.389391 CCAGTCTTCCAGTGTCACGT 59.611 55.000 0.00 0.00 0.00 4.49
762 1056 0.673985 CGACCAGTCTTCCAGTGTCA 59.326 55.000 0.00 0.00 0.00 3.58
853 1171 9.753674 TCCATTACATCTTTCTTTTACCTCAAT 57.246 29.630 0.00 0.00 0.00 2.57
854 1172 9.231297 CTCCATTACATCTTTCTTTTACCTCAA 57.769 33.333 0.00 0.00 0.00 3.02
855 1173 8.602424 TCTCCATTACATCTTTCTTTTACCTCA 58.398 33.333 0.00 0.00 0.00 3.86
856 1174 9.449719 TTCTCCATTACATCTTTCTTTTACCTC 57.550 33.333 0.00 0.00 0.00 3.85
857 1175 9.807921 TTTCTCCATTACATCTTTCTTTTACCT 57.192 29.630 0.00 0.00 0.00 3.08
882 1200 9.203421 CCCGCAAGTCTTTTCTTTATTATTTTT 57.797 29.630 0.00 0.00 0.00 1.94
883 1201 8.581578 TCCCGCAAGTCTTTTCTTTATTATTTT 58.418 29.630 0.00 0.00 0.00 1.82
884 1202 8.117813 TCCCGCAAGTCTTTTCTTTATTATTT 57.882 30.769 0.00 0.00 0.00 1.40
885 1203 7.610305 TCTCCCGCAAGTCTTTTCTTTATTATT 59.390 33.333 0.00 0.00 0.00 1.40
886 1204 7.065923 GTCTCCCGCAAGTCTTTTCTTTATTAT 59.934 37.037 0.00 0.00 0.00 1.28
887 1205 6.370718 GTCTCCCGCAAGTCTTTTCTTTATTA 59.629 38.462 0.00 0.00 0.00 0.98
888 1206 5.181433 GTCTCCCGCAAGTCTTTTCTTTATT 59.819 40.000 0.00 0.00 0.00 1.40
889 1207 4.695928 GTCTCCCGCAAGTCTTTTCTTTAT 59.304 41.667 0.00 0.00 0.00 1.40
907 1227 2.303175 AGGAATCACTAGCGAGTCTCC 58.697 52.381 8.01 3.99 31.73 3.71
942 1263 2.095212 GCTAAAGCCAAAGAAAGGACCG 60.095 50.000 0.00 0.00 34.31 4.79
977 1299 0.902984 TTGGGAGCAAGGACGAGCTA 60.903 55.000 0.00 0.00 42.04 3.32
978 1300 2.177594 CTTGGGAGCAAGGACGAGCT 62.178 60.000 0.00 0.00 45.25 4.09
989 1311 1.322442 GGGATACATTGCTTGGGAGC 58.678 55.000 0.00 0.00 44.70 4.70
990 1312 2.301346 GTGGGATACATTGCTTGGGAG 58.699 52.381 0.00 0.00 39.74 4.30
1195 1517 0.251634 GAGCAAGAGGGGAACAGAGG 59.748 60.000 0.00 0.00 0.00 3.69
1217 1566 4.502259 GGCTCTGAAGTCTGAAACTCTGAA 60.502 45.833 0.00 0.00 37.17 3.02
1218 1567 3.006323 GGCTCTGAAGTCTGAAACTCTGA 59.994 47.826 0.00 0.00 37.17 3.27
1219 1568 3.324993 GGCTCTGAAGTCTGAAACTCTG 58.675 50.000 0.00 0.00 37.17 3.35
1220 1569 2.029470 CGGCTCTGAAGTCTGAAACTCT 60.029 50.000 0.00 0.00 37.17 3.24
1221 1570 2.029828 TCGGCTCTGAAGTCTGAAACTC 60.030 50.000 0.00 0.00 37.17 3.01
1222 1571 1.964223 TCGGCTCTGAAGTCTGAAACT 59.036 47.619 0.00 0.00 41.10 2.66
1223 1572 2.029828 TCTCGGCTCTGAAGTCTGAAAC 60.030 50.000 0.00 0.00 0.00 2.78
1224 1573 2.230025 CTCTCGGCTCTGAAGTCTGAAA 59.770 50.000 0.00 0.00 0.00 2.69
1225 1574 1.815613 CTCTCGGCTCTGAAGTCTGAA 59.184 52.381 0.00 0.00 0.00 3.02
1226 1575 1.458398 CTCTCGGCTCTGAAGTCTGA 58.542 55.000 0.00 0.00 0.00 3.27
1227 1576 0.179140 GCTCTCGGCTCTGAAGTCTG 60.179 60.000 0.00 0.00 38.06 3.51
1228 1577 2.188912 GCTCTCGGCTCTGAAGTCT 58.811 57.895 0.00 0.00 38.06 3.24
1229 1578 4.804496 GCTCTCGGCTCTGAAGTC 57.196 61.111 0.00 0.00 38.06 3.01
1249 1598 7.499321 TGCTACTAAGAACTATCTAGCACTC 57.501 40.000 0.00 0.00 38.18 3.51
1250 1599 7.883391 TTGCTACTAAGAACTATCTAGCACT 57.117 36.000 0.00 0.00 41.13 4.40
1251 1600 7.596995 CCATTGCTACTAAGAACTATCTAGCAC 59.403 40.741 0.00 0.00 41.13 4.40
1252 1601 7.287927 ACCATTGCTACTAAGAACTATCTAGCA 59.712 37.037 0.00 0.00 40.21 3.49
1253 1602 7.662897 ACCATTGCTACTAAGAACTATCTAGC 58.337 38.462 0.00 0.00 35.17 3.42
1262 1611 2.901249 GGCGACCATTGCTACTAAGAA 58.099 47.619 0.00 0.00 0.00 2.52
1263 1612 2.596904 GGCGACCATTGCTACTAAGA 57.403 50.000 0.00 0.00 0.00 2.10
1301 1650 3.991773 CCTTCACGAAAGACACGGATAAA 59.008 43.478 0.00 0.00 37.12 1.40
1369 1718 1.272490 GTTCCTCTGTCCACGATGTCA 59.728 52.381 0.00 0.00 0.00 3.58
1443 2390 5.498393 TCTACCGAGCTAGAAGAAGAAGAA 58.502 41.667 0.00 0.00 0.00 2.52
1444 2391 5.100344 TCTACCGAGCTAGAAGAAGAAGA 57.900 43.478 0.00 0.00 0.00 2.87
1445 2392 5.048991 GGATCTACCGAGCTAGAAGAAGAAG 60.049 48.000 0.00 0.00 0.00 2.85
1817 2764 2.510064 TTTCGCGGGCGTCACCTATT 62.510 55.000 13.21 0.00 40.74 1.73
1819 2766 2.894240 GATTTCGCGGGCGTCACCTA 62.894 60.000 13.21 0.00 40.74 3.08
1823 2770 2.508439 GAGATTTCGCGGGCGTCA 60.508 61.111 13.21 1.23 40.74 4.35
1824 2771 3.262686 GGAGATTTCGCGGGCGTC 61.263 66.667 13.21 3.55 40.74 5.19
1865 2812 3.813724 GCACAGGGGATGGGAGGG 61.814 72.222 0.00 0.00 32.10 4.30
1866 2813 3.813724 GGCACAGGGGATGGGAGG 61.814 72.222 0.00 0.00 32.10 4.30
1899 2847 2.003301 GAACGATCTCCAAGCCAGAAC 58.997 52.381 0.00 0.00 0.00 3.01
1923 2871 5.107453 CGCTAGAAAAACAGTCAATCGAAGT 60.107 40.000 0.00 0.00 0.00 3.01
1924 2872 5.308927 CGCTAGAAAAACAGTCAATCGAAG 58.691 41.667 0.00 0.00 0.00 3.79
1925 2873 4.151689 CCGCTAGAAAAACAGTCAATCGAA 59.848 41.667 0.00 0.00 0.00 3.71
1926 2874 3.678072 CCGCTAGAAAAACAGTCAATCGA 59.322 43.478 0.00 0.00 0.00 3.59
1927 2875 3.725010 GCCGCTAGAAAAACAGTCAATCG 60.725 47.826 0.00 0.00 0.00 3.34
1928 2876 3.725010 CGCCGCTAGAAAAACAGTCAATC 60.725 47.826 0.00 0.00 0.00 2.67
1929 2877 2.159627 CGCCGCTAGAAAAACAGTCAAT 59.840 45.455 0.00 0.00 0.00 2.57
1930 2878 1.529438 CGCCGCTAGAAAAACAGTCAA 59.471 47.619 0.00 0.00 0.00 3.18
1946 2894 2.273370 AGTAGACAATACACACGCCG 57.727 50.000 0.00 0.00 0.00 6.46
1947 2895 4.367386 ACTAGTAGACAATACACACGCC 57.633 45.455 3.59 0.00 0.00 5.68
1953 2901 8.094548 ACATCAAGCAAACTAGTAGACAATACA 58.905 33.333 3.59 0.00 0.00 2.29
1955 2903 9.582431 GTACATCAAGCAAACTAGTAGACAATA 57.418 33.333 3.59 0.00 0.00 1.90
1980 2931 8.786826 TTTACATAGAATCAACAGAATTCGGT 57.213 30.769 5.32 5.32 38.02 4.69
2060 3020 9.537852 TCACCTTAGGTTGTTTATCTACTTCTA 57.462 33.333 0.00 0.00 31.02 2.10
2089 3049 5.919755 AGGAAAGGAAATGCGGTTTAAAAA 58.080 33.333 0.00 0.00 0.00 1.94
2091 3051 4.830600 AGAGGAAAGGAAATGCGGTTTAAA 59.169 37.500 0.00 0.00 0.00 1.52
2095 3055 2.586648 AGAGGAAAGGAAATGCGGTT 57.413 45.000 0.00 0.00 0.00 4.44
2096 3056 2.586648 AAGAGGAAAGGAAATGCGGT 57.413 45.000 0.00 0.00 0.00 5.68
2099 3059 4.336280 ACAGGTAAGAGGAAAGGAAATGC 58.664 43.478 0.00 0.00 0.00 3.56
2122 3082 0.318699 TTGCACAAGAGGTCGTCTCG 60.319 55.000 0.00 0.00 46.82 4.04
2143 3103 7.010552 CACATTGCTAGTGTAGTCAATAAGACC 59.989 40.741 0.00 0.00 38.82 3.85
2159 3119 1.466856 ACACATGGGCACATTGCTAG 58.533 50.000 0.00 0.00 44.28 3.42
2160 3120 1.545136 CAACACATGGGCACATTGCTA 59.455 47.619 0.00 0.00 44.28 3.49
2161 3121 0.319083 CAACACATGGGCACATTGCT 59.681 50.000 0.00 0.00 44.28 3.91
2166 3126 0.033642 CATTGCAACACATGGGCACA 59.966 50.000 0.00 0.00 37.26 4.57
2167 3127 0.671163 CCATTGCAACACATGGGCAC 60.671 55.000 0.00 0.00 37.26 5.01
2168 3128 0.830866 TCCATTGCAACACATGGGCA 60.831 50.000 15.16 0.00 35.03 5.36
2169 3129 0.538118 ATCCATTGCAACACATGGGC 59.462 50.000 15.16 0.00 35.03 5.36
2170 3130 1.137479 GGATCCATTGCAACACATGGG 59.863 52.381 15.16 0.00 35.03 4.00
2171 3131 1.826096 TGGATCCATTGCAACACATGG 59.174 47.619 11.44 10.06 35.58 3.66
2172 3132 3.596310 TTGGATCCATTGCAACACATG 57.404 42.857 17.06 0.00 29.72 3.21
2173 3133 4.620589 TTTTGGATCCATTGCAACACAT 57.379 36.364 17.06 0.00 35.14 3.21
2174 3134 4.620589 ATTTTGGATCCATTGCAACACA 57.379 36.364 17.06 0.00 35.14 3.72
2175 3135 5.964758 TCTATTTTGGATCCATTGCAACAC 58.035 37.500 17.06 0.00 35.14 3.32
2176 3136 6.602410 TTCTATTTTGGATCCATTGCAACA 57.398 33.333 17.06 0.00 35.14 3.33
2177 3137 9.768662 ATTATTCTATTTTGGATCCATTGCAAC 57.231 29.630 17.06 0.00 35.14 4.17
2201 3161 9.868277 TTTCTTTCAAGTTTGTGAACATGTATT 57.132 25.926 0.00 0.00 37.24 1.89
2202 3162 9.868277 TTTTCTTTCAAGTTTGTGAACATGTAT 57.132 25.926 0.00 0.00 37.24 2.29
2203 3163 9.698309 TTTTTCTTTCAAGTTTGTGAACATGTA 57.302 25.926 0.00 0.00 37.24 2.29
2204 3164 8.495148 GTTTTTCTTTCAAGTTTGTGAACATGT 58.505 29.630 0.00 0.00 37.24 3.21
2205 3165 8.494347 TGTTTTTCTTTCAAGTTTGTGAACATG 58.506 29.630 0.00 0.00 37.24 3.21
2206 3166 8.495148 GTGTTTTTCTTTCAAGTTTGTGAACAT 58.505 29.630 0.00 0.00 37.24 2.71
2207 3167 7.708752 AGTGTTTTTCTTTCAAGTTTGTGAACA 59.291 29.630 0.00 0.00 37.24 3.18
2208 3168 8.072238 AGTGTTTTTCTTTCAAGTTTGTGAAC 57.928 30.769 0.00 0.00 37.24 3.18
2209 3169 8.141268 AGAGTGTTTTTCTTTCAAGTTTGTGAA 58.859 29.630 0.00 0.00 35.72 3.18
2210 3170 7.657336 AGAGTGTTTTTCTTTCAAGTTTGTGA 58.343 30.769 0.00 0.00 0.00 3.58
2211 3171 7.873739 AGAGTGTTTTTCTTTCAAGTTTGTG 57.126 32.000 0.00 0.00 0.00 3.33
2212 3172 8.793592 ACTAGAGTGTTTTTCTTTCAAGTTTGT 58.206 29.630 0.00 0.00 0.00 2.83
2213 3173 9.626045 AACTAGAGTGTTTTTCTTTCAAGTTTG 57.374 29.630 0.00 0.00 0.00 2.93
2215 3175 9.626045 CAAACTAGAGTGTTTTTCTTTCAAGTT 57.374 29.630 0.00 0.00 37.98 2.66
2216 3176 8.244113 CCAAACTAGAGTGTTTTTCTTTCAAGT 58.756 33.333 0.00 0.00 37.98 3.16
2217 3177 7.220875 GCCAAACTAGAGTGTTTTTCTTTCAAG 59.779 37.037 0.00 0.00 37.98 3.02
2218 3178 7.033185 GCCAAACTAGAGTGTTTTTCTTTCAA 58.967 34.615 0.00 0.00 37.98 2.69
2219 3179 6.560711 GCCAAACTAGAGTGTTTTTCTTTCA 58.439 36.000 0.00 0.00 37.98 2.69
2220 3180 5.681543 CGCCAAACTAGAGTGTTTTTCTTTC 59.318 40.000 0.00 0.00 37.98 2.62
2221 3181 5.124936 ACGCCAAACTAGAGTGTTTTTCTTT 59.875 36.000 0.00 0.00 37.98 2.52
2222 3182 4.638865 ACGCCAAACTAGAGTGTTTTTCTT 59.361 37.500 0.00 0.00 37.98 2.52
2223 3183 4.196971 ACGCCAAACTAGAGTGTTTTTCT 58.803 39.130 0.00 0.00 37.98 2.52
2224 3184 4.547406 ACGCCAAACTAGAGTGTTTTTC 57.453 40.909 0.00 0.00 37.98 2.29
2225 3185 7.916914 ATATACGCCAAACTAGAGTGTTTTT 57.083 32.000 0.00 0.00 37.98 1.94
2226 3186 9.257651 GATATATACGCCAAACTAGAGTGTTTT 57.742 33.333 0.00 0.00 37.98 2.43
2227 3187 8.418662 TGATATATACGCCAAACTAGAGTGTTT 58.581 33.333 0.00 0.00 40.34 2.83
2228 3188 7.866393 GTGATATATACGCCAAACTAGAGTGTT 59.134 37.037 0.00 0.00 0.00 3.32
2229 3189 7.230913 AGTGATATATACGCCAAACTAGAGTGT 59.769 37.037 0.00 0.00 0.00 3.55
2230 3190 7.594714 AGTGATATATACGCCAAACTAGAGTG 58.405 38.462 0.00 0.00 0.00 3.51
2231 3191 7.762588 AGTGATATATACGCCAAACTAGAGT 57.237 36.000 0.00 0.00 0.00 3.24
2262 3222 9.886132 ATTTTGAGTGAAACCTAATACGAGTAT 57.114 29.630 0.00 0.00 37.80 2.12
2264 3224 9.886132 ATATTTTGAGTGAAACCTAATACGAGT 57.114 29.630 0.00 0.00 37.80 4.18
2273 3233 9.533831 ACAAGGAATATATTTTGAGTGAAACCT 57.466 29.630 14.15 3.81 37.80 3.50
2274 3234 9.573133 CACAAGGAATATATTTTGAGTGAAACC 57.427 33.333 14.15 1.85 37.80 3.27
2275 3235 9.573133 CCACAAGGAATATATTTTGAGTGAAAC 57.427 33.333 14.15 0.00 36.89 2.78
2276 3236 8.250332 GCCACAAGGAATATATTTTGAGTGAAA 58.750 33.333 14.15 0.00 36.89 2.69
2277 3237 7.615365 AGCCACAAGGAATATATTTTGAGTGAA 59.385 33.333 14.15 0.00 36.89 3.18
2278 3238 7.067372 CAGCCACAAGGAATATATTTTGAGTGA 59.933 37.037 14.15 0.00 36.89 3.41
2279 3239 7.148018 ACAGCCACAAGGAATATATTTTGAGTG 60.148 37.037 14.15 12.86 36.89 3.51
2280 3240 6.891908 ACAGCCACAAGGAATATATTTTGAGT 59.108 34.615 14.15 3.73 36.89 3.41
2281 3241 7.338800 ACAGCCACAAGGAATATATTTTGAG 57.661 36.000 14.15 8.05 36.89 3.02
2282 3242 7.716799 AACAGCCACAAGGAATATATTTTGA 57.283 32.000 14.15 0.00 36.89 2.69
2283 3243 7.278424 CCAAACAGCCACAAGGAATATATTTTG 59.722 37.037 0.00 4.10 36.89 2.44
2284 3244 7.180051 TCCAAACAGCCACAAGGAATATATTTT 59.820 33.333 0.00 0.00 36.89 1.82
2285 3245 6.667414 TCCAAACAGCCACAAGGAATATATTT 59.333 34.615 0.00 0.00 36.89 1.40
2286 3246 6.194235 TCCAAACAGCCACAAGGAATATATT 58.806 36.000 0.00 0.00 36.89 1.28
2287 3247 5.765510 TCCAAACAGCCACAAGGAATATAT 58.234 37.500 0.00 0.00 36.89 0.86
2288 3248 5.186256 TCCAAACAGCCACAAGGAATATA 57.814 39.130 0.00 0.00 36.89 0.86
2289 3249 4.046286 TCCAAACAGCCACAAGGAATAT 57.954 40.909 0.00 0.00 36.89 1.28
2290 3250 3.517296 TCCAAACAGCCACAAGGAATA 57.483 42.857 0.00 0.00 36.89 1.75
2291 3251 2.380064 TCCAAACAGCCACAAGGAAT 57.620 45.000 0.00 0.00 36.89 3.01
2292 3252 1.962807 CATCCAAACAGCCACAAGGAA 59.037 47.619 0.00 0.00 36.89 3.36
2293 3253 1.144708 TCATCCAAACAGCCACAAGGA 59.855 47.619 0.00 0.00 36.89 3.36
2294 3254 1.542915 CTCATCCAAACAGCCACAAGG 59.457 52.381 0.00 0.00 38.23 3.61
2295 3255 1.542915 CCTCATCCAAACAGCCACAAG 59.457 52.381 0.00 0.00 0.00 3.16
2296 3256 1.133513 ACCTCATCCAAACAGCCACAA 60.134 47.619 0.00 0.00 0.00 3.33
2297 3257 0.478072 ACCTCATCCAAACAGCCACA 59.522 50.000 0.00 0.00 0.00 4.17
2298 3258 0.883833 CACCTCATCCAAACAGCCAC 59.116 55.000 0.00 0.00 0.00 5.01
2299 3259 0.251297 CCACCTCATCCAAACAGCCA 60.251 55.000 0.00 0.00 0.00 4.75
2300 3260 1.598701 GCCACCTCATCCAAACAGCC 61.599 60.000 0.00 0.00 0.00 4.85
2301 3261 1.885871 GCCACCTCATCCAAACAGC 59.114 57.895 0.00 0.00 0.00 4.40
2302 3262 0.606401 ACGCCACCTCATCCAAACAG 60.606 55.000 0.00 0.00 0.00 3.16
2303 3263 0.687920 TACGCCACCTCATCCAAACA 59.312 50.000 0.00 0.00 0.00 2.83
2304 3264 2.038387 ATACGCCACCTCATCCAAAC 57.962 50.000 0.00 0.00 0.00 2.93
2305 3265 5.247337 TGATATATACGCCACCTCATCCAAA 59.753 40.000 0.00 0.00 0.00 3.28
2306 3266 4.775253 TGATATATACGCCACCTCATCCAA 59.225 41.667 0.00 0.00 0.00 3.53
2307 3267 4.159693 GTGATATATACGCCACCTCATCCA 59.840 45.833 0.00 0.00 0.00 3.41
2308 3268 4.402793 AGTGATATATACGCCACCTCATCC 59.597 45.833 7.66 0.00 0.00 3.51
2309 3269 5.584253 AGTGATATATACGCCACCTCATC 57.416 43.478 7.66 0.00 0.00 2.92
2310 3270 7.476540 TTTAGTGATATATACGCCACCTCAT 57.523 36.000 7.66 0.00 0.00 2.90
2311 3271 6.904463 TTTAGTGATATATACGCCACCTCA 57.096 37.500 7.66 0.00 0.00 3.86
2312 3272 8.773404 ATTTTTAGTGATATATACGCCACCTC 57.227 34.615 7.66 0.00 0.00 3.85
2338 3298 9.886132 ATTTTGAGTGAAACCTAATACGAGTAT 57.114 29.630 0.00 0.00 37.80 2.12
2340 3300 9.886132 ATATTTTGAGTGAAACCTAATACGAGT 57.114 29.630 0.00 0.00 37.80 4.18
2352 3312 9.638239 GCCACAAGAAATATATTTTGAGTGAAA 57.362 29.630 24.33 0.00 32.06 2.69
2353 3313 9.023962 AGCCACAAGAAATATATTTTGAGTGAA 57.976 29.630 24.33 0.00 32.06 3.18
2354 3314 8.461222 CAGCCACAAGAAATATATTTTGAGTGA 58.539 33.333 24.33 0.00 32.06 3.41
2355 3315 8.246180 ACAGCCACAAGAAATATATTTTGAGTG 58.754 33.333 19.95 19.95 0.00 3.51
2356 3316 8.353423 ACAGCCACAAGAAATATATTTTGAGT 57.647 30.769 11.92 8.00 0.00 3.41
2357 3317 9.643693 AAACAGCCACAAGAAATATATTTTGAG 57.356 29.630 11.92 6.31 0.00 3.02
2358 3318 9.421806 CAAACAGCCACAAGAAATATATTTTGA 57.578 29.630 11.92 0.00 0.00 2.69
2359 3319 8.658609 CCAAACAGCCACAAGAAATATATTTTG 58.341 33.333 11.92 9.67 0.00 2.44
2360 3320 8.592809 TCCAAACAGCCACAAGAAATATATTTT 58.407 29.630 11.92 0.54 0.00 1.82
2361 3321 8.133024 TCCAAACAGCCACAAGAAATATATTT 57.867 30.769 10.51 10.51 0.00 1.40
2362 3322 7.716799 TCCAAACAGCCACAAGAAATATATT 57.283 32.000 0.00 0.00 0.00 1.28
2363 3323 7.560991 TCATCCAAACAGCCACAAGAAATATAT 59.439 33.333 0.00 0.00 0.00 0.86
2364 3324 6.889177 TCATCCAAACAGCCACAAGAAATATA 59.111 34.615 0.00 0.00 0.00 0.86
2365 3325 5.716228 TCATCCAAACAGCCACAAGAAATAT 59.284 36.000 0.00 0.00 0.00 1.28
2366 3326 5.076182 TCATCCAAACAGCCACAAGAAATA 58.924 37.500 0.00 0.00 0.00 1.40
2367 3327 3.896888 TCATCCAAACAGCCACAAGAAAT 59.103 39.130 0.00 0.00 0.00 2.17
2368 3328 3.295093 TCATCCAAACAGCCACAAGAAA 58.705 40.909 0.00 0.00 0.00 2.52
2369 3329 2.886523 CTCATCCAAACAGCCACAAGAA 59.113 45.455 0.00 0.00 0.00 2.52
2370 3330 2.507484 CTCATCCAAACAGCCACAAGA 58.493 47.619 0.00 0.00 0.00 3.02
2371 3331 1.542915 CCTCATCCAAACAGCCACAAG 59.457 52.381 0.00 0.00 0.00 3.16
2372 3332 1.133513 ACCTCATCCAAACAGCCACAA 60.134 47.619 0.00 0.00 0.00 3.33
2373 3333 0.478072 ACCTCATCCAAACAGCCACA 59.522 50.000 0.00 0.00 0.00 4.17
2374 3334 0.883833 CACCTCATCCAAACAGCCAC 59.116 55.000 0.00 0.00 0.00 5.01
2375 3335 0.251297 CCACCTCATCCAAACAGCCA 60.251 55.000 0.00 0.00 0.00 4.75
2376 3336 0.967380 CCCACCTCATCCAAACAGCC 60.967 60.000 0.00 0.00 0.00 4.85
2377 3337 0.967380 CCCCACCTCATCCAAACAGC 60.967 60.000 0.00 0.00 0.00 4.40
2378 3338 0.323725 CCCCCACCTCATCCAAACAG 60.324 60.000 0.00 0.00 0.00 3.16
2379 3339 0.774096 TCCCCCACCTCATCCAAACA 60.774 55.000 0.00 0.00 0.00 2.83
2380 3340 0.034089 CTCCCCCACCTCATCCAAAC 60.034 60.000 0.00 0.00 0.00 2.93
2381 3341 1.214305 CCTCCCCCACCTCATCCAAA 61.214 60.000 0.00 0.00 0.00 3.28
2382 3342 1.619363 CCTCCCCCACCTCATCCAA 60.619 63.158 0.00 0.00 0.00 3.53
2383 3343 2.042762 CCTCCCCCACCTCATCCA 59.957 66.667 0.00 0.00 0.00 3.41
2384 3344 2.644628 ATCCCTCCCCCACCTCATCC 62.645 65.000 0.00 0.00 0.00 3.51
2385 3345 1.073397 ATCCCTCCCCCACCTCATC 60.073 63.158 0.00 0.00 0.00 2.92
2386 3346 1.386485 CATCCCTCCCCCACCTCAT 60.386 63.158 0.00 0.00 0.00 2.90
2387 3347 2.042762 CATCCCTCCCCCACCTCA 59.957 66.667 0.00 0.00 0.00 3.86
2388 3348 2.042930 ACATCCCTCCCCCACCTC 59.957 66.667 0.00 0.00 0.00 3.85
2389 3349 2.286425 CACATCCCTCCCCCACCT 60.286 66.667 0.00 0.00 0.00 4.00
2390 3350 3.420482 CCACATCCCTCCCCCACC 61.420 72.222 0.00 0.00 0.00 4.61
2391 3351 2.238701 AACCACATCCCTCCCCCAC 61.239 63.158 0.00 0.00 0.00 4.61
2392 3352 2.212761 AACCACATCCCTCCCCCA 59.787 61.111 0.00 0.00 0.00 4.96
2393 3353 1.289244 ATCAACCACATCCCTCCCCC 61.289 60.000 0.00 0.00 0.00 5.40
2394 3354 0.631212 AATCAACCACATCCCTCCCC 59.369 55.000 0.00 0.00 0.00 4.81
2395 3355 1.686115 CCAATCAACCACATCCCTCCC 60.686 57.143 0.00 0.00 0.00 4.30
2396 3356 1.005924 ACCAATCAACCACATCCCTCC 59.994 52.381 0.00 0.00 0.00 4.30
2397 3357 2.514458 ACCAATCAACCACATCCCTC 57.486 50.000 0.00 0.00 0.00 4.30
2398 3358 2.999185 AACCAATCAACCACATCCCT 57.001 45.000 0.00 0.00 0.00 4.20
2399 3359 2.896685 TGAAACCAATCAACCACATCCC 59.103 45.455 0.00 0.00 0.00 3.85
2400 3360 4.280677 TCTTGAAACCAATCAACCACATCC 59.719 41.667 0.00 0.00 35.55 3.51
2401 3361 5.452078 TCTTGAAACCAATCAACCACATC 57.548 39.130 0.00 0.00 35.55 3.06
2402 3362 6.721208 AGTATCTTGAAACCAATCAACCACAT 59.279 34.615 0.00 0.00 35.55 3.21
2403 3363 6.068010 AGTATCTTGAAACCAATCAACCACA 58.932 36.000 0.00 0.00 35.55 4.17
2404 3364 6.575162 AGTATCTTGAAACCAATCAACCAC 57.425 37.500 0.00 0.00 35.55 4.16
2405 3365 7.393234 CCTTAGTATCTTGAAACCAATCAACCA 59.607 37.037 0.00 0.00 35.55 3.67
2406 3366 7.148069 CCCTTAGTATCTTGAAACCAATCAACC 60.148 40.741 0.00 0.00 35.55 3.77
2407 3367 7.148069 CCCCTTAGTATCTTGAAACCAATCAAC 60.148 40.741 0.00 0.00 35.55 3.18
2408 3368 6.889722 CCCCTTAGTATCTTGAAACCAATCAA 59.110 38.462 0.00 0.00 37.70 2.57
2409 3369 6.011981 ACCCCTTAGTATCTTGAAACCAATCA 60.012 38.462 0.00 0.00 0.00 2.57
2410 3370 6.424032 ACCCCTTAGTATCTTGAAACCAATC 58.576 40.000 0.00 0.00 0.00 2.67
2411 3371 6.402981 ACCCCTTAGTATCTTGAAACCAAT 57.597 37.500 0.00 0.00 0.00 3.16
2412 3372 5.853572 ACCCCTTAGTATCTTGAAACCAA 57.146 39.130 0.00 0.00 0.00 3.67
2413 3373 5.853572 AACCCCTTAGTATCTTGAAACCA 57.146 39.130 0.00 0.00 0.00 3.67
2414 3374 6.374613 CAGAAACCCCTTAGTATCTTGAAACC 59.625 42.308 0.00 0.00 0.00 3.27
2415 3375 6.127980 GCAGAAACCCCTTAGTATCTTGAAAC 60.128 42.308 0.00 0.00 0.00 2.78
2416 3376 5.944007 GCAGAAACCCCTTAGTATCTTGAAA 59.056 40.000 0.00 0.00 0.00 2.69
2417 3377 5.013704 TGCAGAAACCCCTTAGTATCTTGAA 59.986 40.000 0.00 0.00 0.00 2.69
2418 3378 4.534500 TGCAGAAACCCCTTAGTATCTTGA 59.466 41.667 0.00 0.00 0.00 3.02
2419 3379 4.843728 TGCAGAAACCCCTTAGTATCTTG 58.156 43.478 0.00 0.00 0.00 3.02
2420 3380 5.514500 TTGCAGAAACCCCTTAGTATCTT 57.486 39.130 0.00 0.00 0.00 2.40
2421 3381 5.514500 TTTGCAGAAACCCCTTAGTATCT 57.486 39.130 0.00 0.00 0.00 1.98
2422 3382 6.377146 TCATTTTGCAGAAACCCCTTAGTATC 59.623 38.462 0.00 0.00 0.00 2.24
2423 3383 6.152831 GTCATTTTGCAGAAACCCCTTAGTAT 59.847 38.462 0.00 0.00 0.00 2.12
2424 3384 5.475564 GTCATTTTGCAGAAACCCCTTAGTA 59.524 40.000 0.00 0.00 0.00 1.82
2425 3385 4.280929 GTCATTTTGCAGAAACCCCTTAGT 59.719 41.667 0.00 0.00 0.00 2.24
2426 3386 4.615912 CGTCATTTTGCAGAAACCCCTTAG 60.616 45.833 0.00 0.00 0.00 2.18
2427 3387 3.254657 CGTCATTTTGCAGAAACCCCTTA 59.745 43.478 0.00 0.00 0.00 2.69
2428 3388 2.035832 CGTCATTTTGCAGAAACCCCTT 59.964 45.455 0.00 0.00 0.00 3.95
2429 3389 1.613437 CGTCATTTTGCAGAAACCCCT 59.387 47.619 0.00 0.00 0.00 4.79
2430 3390 1.611491 TCGTCATTTTGCAGAAACCCC 59.389 47.619 0.00 0.00 0.00 4.95
2431 3391 3.363341 TTCGTCATTTTGCAGAAACCC 57.637 42.857 0.00 0.00 0.00 4.11
2432 3392 4.545610 TCATTCGTCATTTTGCAGAAACC 58.454 39.130 0.00 0.00 0.00 3.27
2433 3393 7.217070 GTCTATCATTCGTCATTTTGCAGAAAC 59.783 37.037 0.00 0.00 0.00 2.78
2434 3394 7.243487 GTCTATCATTCGTCATTTTGCAGAAA 58.757 34.615 0.00 0.00 0.00 2.52
2435 3395 6.455513 CGTCTATCATTCGTCATTTTGCAGAA 60.456 38.462 0.00 0.00 0.00 3.02
2436 3396 5.005682 CGTCTATCATTCGTCATTTTGCAGA 59.994 40.000 0.00 0.00 0.00 4.26
2437 3397 5.193216 CGTCTATCATTCGTCATTTTGCAG 58.807 41.667 0.00 0.00 0.00 4.41
2438 3398 4.494035 GCGTCTATCATTCGTCATTTTGCA 60.494 41.667 0.00 0.00 0.00 4.08
2439 3399 3.962481 GCGTCTATCATTCGTCATTTTGC 59.038 43.478 0.00 0.00 0.00 3.68
2440 3400 4.957967 GTGCGTCTATCATTCGTCATTTTG 59.042 41.667 0.00 0.00 0.00 2.44
2441 3401 4.034048 GGTGCGTCTATCATTCGTCATTTT 59.966 41.667 0.00 0.00 0.00 1.82
2442 3402 3.555956 GGTGCGTCTATCATTCGTCATTT 59.444 43.478 0.00 0.00 0.00 2.32
2443 3403 3.123804 GGTGCGTCTATCATTCGTCATT 58.876 45.455 0.00 0.00 0.00 2.57
2444 3404 2.100749 TGGTGCGTCTATCATTCGTCAT 59.899 45.455 0.00 0.00 0.00 3.06
2445 3405 1.474879 TGGTGCGTCTATCATTCGTCA 59.525 47.619 0.00 0.00 0.00 4.35
2446 3406 2.203800 TGGTGCGTCTATCATTCGTC 57.796 50.000 0.00 0.00 0.00 4.20
2447 3407 2.100749 TGATGGTGCGTCTATCATTCGT 59.899 45.455 4.23 0.00 38.73 3.85
2448 3408 2.742774 TGATGGTGCGTCTATCATTCG 58.257 47.619 4.23 0.00 38.73 3.34
2452 3412 3.321682 TGATGATGATGGTGCGTCTATCA 59.678 43.478 9.37 9.37 45.46 2.15
2453 3413 3.917988 TGATGATGATGGTGCGTCTATC 58.082 45.455 0.00 0.00 35.10 2.08
2454 3414 4.060900 GTTGATGATGATGGTGCGTCTAT 58.939 43.478 0.00 0.00 0.00 1.98
2455 3415 3.132824 AGTTGATGATGATGGTGCGTCTA 59.867 43.478 0.00 0.00 0.00 2.59
2456 3416 2.093288 AGTTGATGATGATGGTGCGTCT 60.093 45.455 0.00 0.00 0.00 4.18
2457 3417 2.031314 CAGTTGATGATGATGGTGCGTC 59.969 50.000 0.00 0.00 0.00 5.19
2458 3418 2.011947 CAGTTGATGATGATGGTGCGT 58.988 47.619 0.00 0.00 0.00 5.24
2459 3419 2.282407 TCAGTTGATGATGATGGTGCG 58.718 47.619 0.00 0.00 31.12 5.34
2460 3420 3.276857 ACTCAGTTGATGATGATGGTGC 58.723 45.455 0.00 0.00 37.28 5.01
2461 3421 4.767478 AGACTCAGTTGATGATGATGGTG 58.233 43.478 0.00 0.00 37.28 4.17
2462 3422 5.432680 AAGACTCAGTTGATGATGATGGT 57.567 39.130 0.00 0.00 37.28 3.55
2463 3423 6.754702 AAAAGACTCAGTTGATGATGATGG 57.245 37.500 0.00 0.00 37.28 3.51
2465 3425 9.775854 CCTATAAAAGACTCAGTTGATGATGAT 57.224 33.333 0.00 0.00 37.28 2.45
2466 3426 8.981659 TCCTATAAAAGACTCAGTTGATGATGA 58.018 33.333 0.00 0.00 37.28 2.92
2467 3427 9.258826 CTCCTATAAAAGACTCAGTTGATGATG 57.741 37.037 0.00 0.00 37.28 3.07
2468 3428 8.986991 ACTCCTATAAAAGACTCAGTTGATGAT 58.013 33.333 0.00 0.00 37.28 2.45
2469 3429 8.367660 ACTCCTATAAAAGACTCAGTTGATGA 57.632 34.615 0.00 0.00 36.21 2.92
2470 3430 9.743057 CTACTCCTATAAAAGACTCAGTTGATG 57.257 37.037 0.00 0.00 0.00 3.07
2471 3431 9.702253 TCTACTCCTATAAAAGACTCAGTTGAT 57.298 33.333 0.00 0.00 0.00 2.57
2472 3432 9.179909 CTCTACTCCTATAAAAGACTCAGTTGA 57.820 37.037 0.00 0.00 0.00 3.18
2473 3433 9.179909 TCTCTACTCCTATAAAAGACTCAGTTG 57.820 37.037 0.00 0.00 0.00 3.16
2474 3434 9.756571 TTCTCTACTCCTATAAAAGACTCAGTT 57.243 33.333 0.00 0.00 0.00 3.16
2475 3435 9.756571 TTTCTCTACTCCTATAAAAGACTCAGT 57.243 33.333 0.00 0.00 0.00 3.41
2478 3438 9.471084 GCATTTCTCTACTCCTATAAAAGACTC 57.529 37.037 0.00 0.00 0.00 3.36
2479 3439 8.982723 TGCATTTCTCTACTCCTATAAAAGACT 58.017 33.333 0.00 0.00 0.00 3.24
2480 3440 9.601217 TTGCATTTCTCTACTCCTATAAAAGAC 57.399 33.333 0.00 0.00 0.00 3.01
2483 3443 9.905713 ACATTGCATTTCTCTACTCCTATAAAA 57.094 29.630 0.00 0.00 0.00 1.52
2484 3444 9.547753 GACATTGCATTTCTCTACTCCTATAAA 57.452 33.333 0.00 0.00 0.00 1.40
2485 3445 8.704668 TGACATTGCATTTCTCTACTCCTATAA 58.295 33.333 0.00 0.00 0.00 0.98
2486 3446 8.250143 TGACATTGCATTTCTCTACTCCTATA 57.750 34.615 0.00 0.00 0.00 1.31
2487 3447 7.129457 TGACATTGCATTTCTCTACTCCTAT 57.871 36.000 0.00 0.00 0.00 2.57
2488 3448 6.544928 TGACATTGCATTTCTCTACTCCTA 57.455 37.500 0.00 0.00 0.00 2.94
2489 3449 5.426689 TGACATTGCATTTCTCTACTCCT 57.573 39.130 0.00 0.00 0.00 3.69
2490 3450 6.493116 CATTGACATTGCATTTCTCTACTCC 58.507 40.000 0.00 0.00 0.00 3.85
2491 3451 5.970023 GCATTGACATTGCATTTCTCTACTC 59.030 40.000 15.64 0.00 39.90 2.59
2492 3452 5.651139 AGCATTGACATTGCATTTCTCTACT 59.349 36.000 20.99 0.00 42.62 2.57
2493 3453 5.888105 AGCATTGACATTGCATTTCTCTAC 58.112 37.500 20.99 0.00 42.62 2.59
2494 3454 7.628769 TTAGCATTGACATTGCATTTCTCTA 57.371 32.000 20.99 3.82 42.62 2.43
2495 3455 6.519679 TTAGCATTGACATTGCATTTCTCT 57.480 33.333 20.99 4.65 42.62 3.10
2496 3456 6.810182 ACTTTAGCATTGACATTGCATTTCTC 59.190 34.615 20.99 0.00 42.62 2.87
2497 3457 6.694447 ACTTTAGCATTGACATTGCATTTCT 58.306 32.000 20.99 5.86 42.62 2.52
2498 3458 6.956299 ACTTTAGCATTGACATTGCATTTC 57.044 33.333 20.99 0.00 42.62 2.17
2499 3459 7.733402 AAACTTTAGCATTGACATTGCATTT 57.267 28.000 20.99 11.54 42.62 2.32
2500 3460 7.733402 AAAACTTTAGCATTGACATTGCATT 57.267 28.000 20.99 7.08 42.62 3.56
2501 3461 7.658575 AGAAAAACTTTAGCATTGACATTGCAT 59.341 29.630 20.99 10.75 42.62 3.96
2502 3462 6.985645 AGAAAAACTTTAGCATTGACATTGCA 59.014 30.769 20.99 7.47 42.62 4.08
2503 3463 7.412137 AGAAAAACTTTAGCATTGACATTGC 57.588 32.000 13.25 13.25 40.45 3.56
2507 3467 9.030301 GCTAAAAGAAAAACTTTAGCATTGACA 57.970 29.630 17.38 0.00 46.55 3.58
2546 3506 1.737838 TTTGCGTGCCTCTCTATTGG 58.262 50.000 0.00 0.00 0.00 3.16
2561 3521 2.734346 GTGGTGGCGCACATTTGC 60.734 61.111 10.83 0.00 46.21 3.68
2562 3522 2.049248 GGTGGTGGCGCACATTTG 60.049 61.111 10.83 0.00 35.86 2.32
2594 3554 1.350071 TACACCGGGGTTAAGCTCAA 58.650 50.000 18.35 0.00 0.00 3.02
2609 3569 4.645588 ACCACTAGAGCACCTCTAATACAC 59.354 45.833 0.00 0.00 41.74 2.90
2615 3575 3.451402 TTGACCACTAGAGCACCTCTA 57.549 47.619 0.00 2.34 41.50 2.43
2628 3588 0.319813 GGGCACAAGCAATTGACCAC 60.320 55.000 10.34 0.00 44.61 4.16
2631 3591 0.313672 TTCGGGCACAAGCAATTGAC 59.686 50.000 10.34 0.30 44.61 3.18
2661 3621 3.791973 CTGGTAGAGTTCAGCAGTAGG 57.208 52.381 0.00 0.00 36.88 3.18
2670 3630 1.197036 GGTTTTGCGCTGGTAGAGTTC 59.803 52.381 9.73 0.00 0.00 3.01
2673 3633 0.605319 TGGGTTTTGCGCTGGTAGAG 60.605 55.000 9.73 0.00 0.00 2.43
2706 3666 0.400213 TCTTGGTGCAGGGGTTAGTG 59.600 55.000 0.00 0.00 0.00 2.74
2708 3668 0.400213 TGTCTTGGTGCAGGGGTTAG 59.600 55.000 0.00 0.00 0.00 2.34
2709 3669 1.072266 ATGTCTTGGTGCAGGGGTTA 58.928 50.000 0.00 0.00 0.00 2.85
2711 3671 1.075482 CATGTCTTGGTGCAGGGGT 59.925 57.895 0.00 0.00 0.00 4.95
2713 3673 2.693762 CGCATGTCTTGGTGCAGGG 61.694 63.158 0.00 0.00 41.32 4.45
2745 5189 2.669434 TCGTCCTTAATTTCGCCTTTCG 59.331 45.455 0.00 0.00 40.15 3.46
2774 5218 4.857509 TTAACCTTTAACCATGCACACC 57.142 40.909 0.00 0.00 0.00 4.16
2777 5221 9.869757 AGAATAAATTAACCTTTAACCATGCAC 57.130 29.630 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.