Multiple sequence alignment - TraesCS6D01G299900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G299900 chr6D 100.000 2528 0 0 1 2528 410055891 410053364 0.000000e+00 4669
1 TraesCS6D01G299900 chr6D 89.989 1818 158 12 723 2526 409882596 409884403 0.000000e+00 2327
2 TraesCS6D01G299900 chr6D 91.613 1085 89 2 723 1807 409872547 409873629 0.000000e+00 1498
3 TraesCS6D01G299900 chr6D 91.781 438 35 1 2089 2526 111340961 111341397 2.150000e-170 608
4 TraesCS6D01G299900 chr6D 95.942 345 11 1 1 342 385620591 385620935 7.900000e-155 556
5 TraesCS6D01G299900 chr6D 95.942 345 11 1 1 342 455469364 455469020 7.900000e-155 556
6 TraesCS6D01G299900 chr6D 95.018 281 14 0 343 623 409872206 409872486 2.310000e-120 442
7 TraesCS6D01G299900 chr6D 94.872 117 6 0 1723 1839 410042561 410042445 1.540000e-42 183
8 TraesCS6D01G299900 chr6B 91.036 1506 96 20 343 1840 616430774 616429300 0.000000e+00 1997
9 TraesCS6D01G299900 chr6B 90.088 1473 121 17 343 1800 616380927 616382389 0.000000e+00 1888
10 TraesCS6D01G299900 chr6A 90.728 1154 86 7 677 1811 555323491 555324642 0.000000e+00 1519
11 TraesCS6D01G299900 chr6A 96.127 284 11 0 340 623 555323209 555323492 4.930000e-127 464
12 TraesCS6D01G299900 chr5D 91.781 438 35 1 2089 2526 328479133 328478697 2.150000e-170 608
13 TraesCS6D01G299900 chr5D 96.522 345 9 1 1 342 50753087 50753431 3.650000e-158 568
14 TraesCS6D01G299900 chr5D 96.232 345 10 1 1 342 484552402 484552058 1.700000e-156 562
15 TraesCS6D01G299900 chr5D 95.665 346 12 1 1 343 100803024 100802679 1.020000e-153 553
16 TraesCS6D01G299900 chr5B 91.781 438 35 1 2089 2526 521200913 521200477 2.150000e-170 608
17 TraesCS6D01G299900 chr4D 91.781 438 35 1 2089 2526 423859481 423859917 2.150000e-170 608
18 TraesCS6D01G299900 chr3D 91.781 438 35 1 2089 2526 609980997 609981433 2.150000e-170 608
19 TraesCS6D01G299900 chr3D 95.115 348 13 2 1 345 132849765 132850111 1.710000e-151 545
20 TraesCS6D01G299900 chr3D 95.072 345 14 1 1 342 606980403 606980747 7.960000e-150 540
21 TraesCS6D01G299900 chr2D 91.781 438 35 1 2089 2526 192243556 192243120 2.150000e-170 608
22 TraesCS6D01G299900 chr2D 91.781 438 35 1 2089 2526 369456377 369455941 2.150000e-170 608
23 TraesCS6D01G299900 chr2D 78.426 394 63 18 993 1369 90309259 90308871 1.170000e-58 237
24 TraesCS6D01G299900 chr1D 91.781 438 35 1 2089 2526 204467403 204467839 2.150000e-170 608
25 TraesCS6D01G299900 chrUn 95.652 345 12 1 1 342 68068261 68068605 3.680000e-153 551
26 TraesCS6D01G299900 chr7D 95.362 345 13 1 1 342 136210858 136210514 1.710000e-151 545
27 TraesCS6D01G299900 chr2B 76.949 603 105 26 343 933 147830022 147830602 1.890000e-81 313
28 TraesCS6D01G299900 chr2B 76.949 603 105 26 343 933 147869775 147870355 1.890000e-81 313
29 TraesCS6D01G299900 chr2B 85.068 221 31 2 993 1212 142945106 142944887 9.100000e-55 224
30 TraesCS6D01G299900 chr2B 79.125 297 46 11 343 636 148036684 148036967 9.230000e-45 191
31 TraesCS6D01G299900 chr2A 79.389 393 61 16 993 1369 90045394 90045006 2.490000e-65 259
32 TraesCS6D01G299900 chr2A 84.052 232 31 6 981 1209 95259981 95260209 4.230000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G299900 chr6D 410053364 410055891 2527 True 4669.0 4669 100.0000 1 2528 1 chr6D.!!$R2 2527
1 TraesCS6D01G299900 chr6D 409882596 409884403 1807 False 2327.0 2327 89.9890 723 2526 1 chr6D.!!$F3 1803
2 TraesCS6D01G299900 chr6D 409872206 409873629 1423 False 970.0 1498 93.3155 343 1807 2 chr6D.!!$F4 1464
3 TraesCS6D01G299900 chr6B 616429300 616430774 1474 True 1997.0 1997 91.0360 343 1840 1 chr6B.!!$R1 1497
4 TraesCS6D01G299900 chr6B 616380927 616382389 1462 False 1888.0 1888 90.0880 343 1800 1 chr6B.!!$F1 1457
5 TraesCS6D01G299900 chr6A 555323209 555324642 1433 False 991.5 1519 93.4275 340 1811 2 chr6A.!!$F1 1471
6 TraesCS6D01G299900 chr2B 147830022 147830602 580 False 313.0 313 76.9490 343 933 1 chr2B.!!$F1 590
7 TraesCS6D01G299900 chr2B 147869775 147870355 580 False 313.0 313 76.9490 343 933 1 chr2B.!!$F2 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 329 0.036164 TGTGCTTCACATTAGGCCGT 59.964 50.0 0.00 0.00 39.62 5.68 F
1221 1281 0.104986 ACCCCTCATCGATGGATCCA 60.105 55.0 24.61 18.88 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1288 1348 0.041238 TCCAGGTCATCGGGAGTCTT 59.959 55.0 0.0 0.0 34.79 3.01 R
2285 2353 0.464373 AGCATTGTGCCTCCATACCG 60.464 55.0 0.0 0.0 46.52 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.929697 CAAGTGCTTGTGATAGTTTGAGA 57.070 39.130 3.91 0.00 35.92 3.27
23 24 6.304356 CAAGTGCTTGTGATAGTTTGAGAA 57.696 37.500 3.91 0.00 35.92 2.87
24 25 6.369005 CAAGTGCTTGTGATAGTTTGAGAAG 58.631 40.000 3.91 0.00 35.92 2.85
25 26 5.615289 AGTGCTTGTGATAGTTTGAGAAGT 58.385 37.500 0.00 0.00 0.00 3.01
26 27 6.759272 AGTGCTTGTGATAGTTTGAGAAGTA 58.241 36.000 0.00 0.00 0.00 2.24
27 28 7.217200 AGTGCTTGTGATAGTTTGAGAAGTAA 58.783 34.615 0.00 0.00 0.00 2.24
28 29 7.171678 AGTGCTTGTGATAGTTTGAGAAGTAAC 59.828 37.037 0.00 0.00 0.00 2.50
29 30 6.989759 TGCTTGTGATAGTTTGAGAAGTAACA 59.010 34.615 0.00 0.00 0.00 2.41
30 31 7.661437 TGCTTGTGATAGTTTGAGAAGTAACAT 59.339 33.333 0.00 0.00 29.66 2.71
31 32 9.151471 GCTTGTGATAGTTTGAGAAGTAACATA 57.849 33.333 0.00 0.00 29.66 2.29
42 43 9.802039 TTTGAGAAGTAACATATTTAAGGTGGT 57.198 29.630 0.00 0.00 0.00 4.16
50 51 9.859427 GTAACATATTTAAGGTGGTAAAAACCC 57.141 33.333 0.00 0.00 38.57 4.11
51 52 8.730093 AACATATTTAAGGTGGTAAAAACCCT 57.270 30.769 0.00 0.00 38.57 4.34
52 53 8.129496 ACATATTTAAGGTGGTAAAAACCCTG 57.871 34.615 0.00 0.00 38.57 4.45
53 54 7.731235 ACATATTTAAGGTGGTAAAAACCCTGT 59.269 33.333 0.00 0.00 38.57 4.00
54 55 8.590204 CATATTTAAGGTGGTAAAAACCCTGTT 58.410 33.333 0.00 0.00 38.57 3.16
55 56 9.825706 ATATTTAAGGTGGTAAAAACCCTGTTA 57.174 29.630 0.00 0.00 38.57 2.41
56 57 7.585579 TTTAAGGTGGTAAAAACCCTGTTAG 57.414 36.000 0.00 0.00 38.57 2.34
57 58 3.493334 AGGTGGTAAAAACCCTGTTAGC 58.507 45.455 0.00 0.00 38.57 3.09
58 59 2.559668 GGTGGTAAAAACCCTGTTAGCC 59.440 50.000 0.00 0.00 0.00 3.93
59 60 2.227149 GTGGTAAAAACCCTGTTAGCCG 59.773 50.000 0.00 0.00 0.00 5.52
60 61 2.106166 TGGTAAAAACCCTGTTAGCCGA 59.894 45.455 0.00 0.00 0.00 5.54
61 62 2.745821 GGTAAAAACCCTGTTAGCCGAG 59.254 50.000 0.00 0.00 0.00 4.63
62 63 1.244816 AAAAACCCTGTTAGCCGAGC 58.755 50.000 0.00 0.00 0.00 5.03
63 64 0.953960 AAAACCCTGTTAGCCGAGCG 60.954 55.000 0.00 0.00 0.00 5.03
64 65 1.823169 AAACCCTGTTAGCCGAGCGA 61.823 55.000 0.00 0.00 0.00 4.93
65 66 2.105128 CCCTGTTAGCCGAGCGAG 59.895 66.667 0.00 0.00 0.00 5.03
66 67 2.105128 CCTGTTAGCCGAGCGAGG 59.895 66.667 0.00 0.00 0.00 4.63
67 68 2.711922 CCTGTTAGCCGAGCGAGGT 61.712 63.158 2.58 0.00 0.00 3.85
68 69 1.517257 CTGTTAGCCGAGCGAGGTG 60.517 63.158 2.58 0.00 0.00 4.00
69 70 2.202756 GTTAGCCGAGCGAGGTGG 60.203 66.667 2.58 0.00 0.00 4.61
70 71 3.458163 TTAGCCGAGCGAGGTGGG 61.458 66.667 0.00 0.00 0.00 4.61
71 72 3.949885 TTAGCCGAGCGAGGTGGGA 62.950 63.158 7.51 0.00 0.00 4.37
74 75 2.439701 CCGAGCGAGGTGGGACTA 60.440 66.667 0.00 0.00 0.00 2.59
75 76 2.050350 CCGAGCGAGGTGGGACTAA 61.050 63.158 0.00 0.00 0.00 2.24
76 77 1.601419 CCGAGCGAGGTGGGACTAAA 61.601 60.000 0.00 0.00 0.00 1.85
77 78 0.245539 CGAGCGAGGTGGGACTAAAA 59.754 55.000 0.00 0.00 0.00 1.52
78 79 1.337447 CGAGCGAGGTGGGACTAAAAA 60.337 52.381 0.00 0.00 0.00 1.94
98 99 5.400066 AAAACAACTGCAACTACAAACCT 57.600 34.783 0.00 0.00 0.00 3.50
99 100 4.632538 AACAACTGCAACTACAAACCTC 57.367 40.909 0.00 0.00 0.00 3.85
100 101 3.886123 ACAACTGCAACTACAAACCTCT 58.114 40.909 0.00 0.00 0.00 3.69
101 102 5.031066 ACAACTGCAACTACAAACCTCTA 57.969 39.130 0.00 0.00 0.00 2.43
102 103 5.057149 ACAACTGCAACTACAAACCTCTAG 58.943 41.667 0.00 0.00 0.00 2.43
103 104 4.957684 ACTGCAACTACAAACCTCTAGT 57.042 40.909 0.00 0.00 0.00 2.57
104 105 6.183360 ACAACTGCAACTACAAACCTCTAGTA 60.183 38.462 0.00 0.00 0.00 1.82
105 106 5.780984 ACTGCAACTACAAACCTCTAGTAC 58.219 41.667 0.00 0.00 0.00 2.73
106 107 5.143376 TGCAACTACAAACCTCTAGTACC 57.857 43.478 0.00 0.00 0.00 3.34
107 108 4.171754 GCAACTACAAACCTCTAGTACCG 58.828 47.826 0.00 0.00 0.00 4.02
108 109 4.741342 CAACTACAAACCTCTAGTACCGG 58.259 47.826 0.00 0.00 0.00 5.28
109 110 4.039603 ACTACAAACCTCTAGTACCGGT 57.960 45.455 13.98 13.98 0.00 5.28
110 111 4.411013 ACTACAAACCTCTAGTACCGGTT 58.589 43.478 15.04 0.00 42.52 4.44
114 115 3.672767 AACCTCTAGTACCGGTTTGTG 57.327 47.619 15.04 1.17 37.76 3.33
115 116 1.897802 ACCTCTAGTACCGGTTTGTGG 59.102 52.381 15.04 9.84 0.00 4.17
116 117 1.897802 CCTCTAGTACCGGTTTGTGGT 59.102 52.381 15.04 0.00 43.62 4.16
117 118 3.091545 CCTCTAGTACCGGTTTGTGGTA 58.908 50.000 15.04 0.00 40.96 3.25
118 119 3.129988 CCTCTAGTACCGGTTTGTGGTAG 59.870 52.174 15.04 5.37 42.44 3.18
119 120 3.091545 TCTAGTACCGGTTTGTGGTAGG 58.908 50.000 15.04 0.00 42.44 3.18
120 121 2.014010 AGTACCGGTTTGTGGTAGGA 57.986 50.000 15.04 0.00 42.44 2.94
121 122 2.328319 AGTACCGGTTTGTGGTAGGAA 58.672 47.619 15.04 0.00 42.44 3.36
122 123 2.037641 AGTACCGGTTTGTGGTAGGAAC 59.962 50.000 15.04 0.00 42.44 3.62
123 124 0.109153 ACCGGTTTGTGGTAGGAACC 59.891 55.000 0.00 0.00 46.98 3.62
134 135 3.808466 GGTAGGAACCGGTACTAAAGG 57.192 52.381 8.00 0.00 35.62 3.11
135 136 2.159043 GGTAGGAACCGGTACTAAAGGC 60.159 54.545 8.00 1.95 35.62 4.35
136 137 0.533951 AGGAACCGGTACTAAAGGCG 59.466 55.000 8.00 0.00 0.00 5.52
137 138 1.086067 GGAACCGGTACTAAAGGCGC 61.086 60.000 8.00 0.00 0.00 6.53
138 139 0.108472 GAACCGGTACTAAAGGCGCT 60.108 55.000 8.00 0.00 0.00 5.92
139 140 0.390735 AACCGGTACTAAAGGCGCTG 60.391 55.000 8.00 0.00 0.00 5.18
140 141 1.520787 CCGGTACTAAAGGCGCTGG 60.521 63.158 7.64 0.00 0.00 4.85
141 142 1.217244 CGGTACTAAAGGCGCTGGT 59.783 57.895 7.64 0.00 0.00 4.00
142 143 1.082117 CGGTACTAAAGGCGCTGGTG 61.082 60.000 7.64 0.00 0.00 4.17
143 144 0.743345 GGTACTAAAGGCGCTGGTGG 60.743 60.000 7.64 0.00 0.00 4.61
144 145 0.743345 GTACTAAAGGCGCTGGTGGG 60.743 60.000 7.64 0.00 0.00 4.61
145 146 1.906105 TACTAAAGGCGCTGGTGGGG 61.906 60.000 7.64 0.00 0.00 4.96
169 170 4.735132 CCGGACCGCGTGACACAT 62.735 66.667 8.86 0.00 0.00 3.21
170 171 3.179265 CGGACCGCGTGACACATC 61.179 66.667 4.92 0.00 0.00 3.06
171 172 2.813908 GGACCGCGTGACACATCC 60.814 66.667 4.92 3.16 0.00 3.51
172 173 2.261671 GACCGCGTGACACATCCT 59.738 61.111 4.92 0.00 0.00 3.24
173 174 1.805945 GACCGCGTGACACATCCTC 60.806 63.158 4.92 0.00 0.00 3.71
174 175 2.214181 GACCGCGTGACACATCCTCT 62.214 60.000 4.92 0.00 0.00 3.69
175 176 1.079819 CCGCGTGACACATCCTCTT 60.080 57.895 4.92 0.00 0.00 2.85
176 177 0.670546 CCGCGTGACACATCCTCTTT 60.671 55.000 4.92 0.00 0.00 2.52
177 178 1.403647 CCGCGTGACACATCCTCTTTA 60.404 52.381 4.92 0.00 0.00 1.85
178 179 1.920574 CGCGTGACACATCCTCTTTAG 59.079 52.381 6.37 0.00 0.00 1.85
179 180 2.671351 CGCGTGACACATCCTCTTTAGT 60.671 50.000 6.37 0.00 0.00 2.24
180 181 3.427098 CGCGTGACACATCCTCTTTAGTA 60.427 47.826 6.37 0.00 0.00 1.82
181 182 3.858238 GCGTGACACATCCTCTTTAGTAC 59.142 47.826 6.37 0.00 0.00 2.73
182 183 4.421948 CGTGACACATCCTCTTTAGTACC 58.578 47.826 6.37 0.00 0.00 3.34
183 184 4.421948 GTGACACATCCTCTTTAGTACCG 58.578 47.826 0.00 0.00 0.00 4.02
184 185 3.446161 TGACACATCCTCTTTAGTACCGG 59.554 47.826 0.00 0.00 0.00 5.28
185 186 3.438183 ACACATCCTCTTTAGTACCGGT 58.562 45.455 13.98 13.98 0.00 5.28
186 187 3.836562 ACACATCCTCTTTAGTACCGGTT 59.163 43.478 15.04 0.00 0.00 4.44
187 188 4.081807 ACACATCCTCTTTAGTACCGGTTC 60.082 45.833 15.04 8.12 0.00 3.62
188 189 3.129988 ACATCCTCTTTAGTACCGGTTCG 59.870 47.826 15.04 0.00 0.00 3.95
189 190 2.795329 TCCTCTTTAGTACCGGTTCGT 58.205 47.619 15.04 0.00 0.00 3.85
190 191 2.489329 TCCTCTTTAGTACCGGTTCGTG 59.511 50.000 15.04 0.80 0.00 4.35
191 192 2.257034 CTCTTTAGTACCGGTTCGTGC 58.743 52.381 15.04 0.00 0.00 5.34
192 193 1.067635 TCTTTAGTACCGGTTCGTGCC 60.068 52.381 15.04 0.00 0.00 5.01
193 194 0.678395 TTTAGTACCGGTTCGTGCCA 59.322 50.000 15.04 0.00 0.00 4.92
194 195 0.038343 TTAGTACCGGTTCGTGCCAC 60.038 55.000 15.04 1.99 0.00 5.01
195 196 2.198906 TAGTACCGGTTCGTGCCACG 62.199 60.000 15.04 11.80 44.19 4.94
204 205 3.107661 CGTGCCACGAACCGGTAC 61.108 66.667 12.85 0.00 46.05 3.34
205 206 2.341176 GTGCCACGAACCGGTACT 59.659 61.111 8.00 0.00 36.33 2.73
206 207 1.586028 GTGCCACGAACCGGTACTA 59.414 57.895 8.00 0.00 36.33 1.82
207 208 0.038343 GTGCCACGAACCGGTACTAA 60.038 55.000 8.00 0.00 36.33 2.24
208 209 0.678395 TGCCACGAACCGGTACTAAA 59.322 50.000 8.00 0.00 0.00 1.85
209 210 1.337074 TGCCACGAACCGGTACTAAAG 60.337 52.381 8.00 0.00 0.00 1.85
210 211 2.000429 CCACGAACCGGTACTAAAGG 58.000 55.000 8.00 1.40 0.00 3.11
211 212 1.273327 CCACGAACCGGTACTAAAGGT 59.727 52.381 8.00 0.00 40.50 3.50
216 217 2.934886 ACCGGTACTAAAGGTTTGCA 57.065 45.000 4.49 0.00 33.96 4.08
217 218 3.211718 ACCGGTACTAAAGGTTTGCAA 57.788 42.857 4.49 0.00 33.96 4.08
218 219 2.880268 ACCGGTACTAAAGGTTTGCAAC 59.120 45.455 4.49 0.00 33.96 4.17
219 220 2.096119 CCGGTACTAAAGGTTTGCAACG 60.096 50.000 0.00 0.00 0.00 4.10
220 221 2.801679 CGGTACTAAAGGTTTGCAACGA 59.198 45.455 0.00 0.00 0.00 3.85
221 222 3.248125 CGGTACTAAAGGTTTGCAACGAA 59.752 43.478 0.00 0.00 0.00 3.85
222 223 4.530388 GGTACTAAAGGTTTGCAACGAAC 58.470 43.478 0.00 0.00 0.00 3.95
223 224 3.703286 ACTAAAGGTTTGCAACGAACC 57.297 42.857 10.30 10.30 45.49 3.62
226 227 3.112842 GGTTTGCAACGAACCGGT 58.887 55.556 0.00 0.00 37.41 5.28
227 228 2.319219 GGTTTGCAACGAACCGGTA 58.681 52.632 8.00 0.00 37.41 4.02
228 229 0.041047 GGTTTGCAACGAACCGGTAC 60.041 55.000 8.00 0.00 37.41 3.34
229 230 0.939419 GTTTGCAACGAACCGGTACT 59.061 50.000 8.00 0.00 0.00 2.73
230 231 2.134346 GTTTGCAACGAACCGGTACTA 58.866 47.619 8.00 0.00 0.00 1.82
231 232 2.522836 TTGCAACGAACCGGTACTAA 57.477 45.000 8.00 0.00 0.00 2.24
232 233 2.747396 TGCAACGAACCGGTACTAAT 57.253 45.000 8.00 0.00 0.00 1.73
233 234 3.042871 TGCAACGAACCGGTACTAATT 57.957 42.857 8.00 0.00 0.00 1.40
234 235 4.185467 TGCAACGAACCGGTACTAATTA 57.815 40.909 8.00 0.00 0.00 1.40
235 236 4.175516 TGCAACGAACCGGTACTAATTAG 58.824 43.478 8.00 11.05 0.00 1.73
236 237 3.000623 GCAACGAACCGGTACTAATTAGC 59.999 47.826 8.00 1.06 0.00 3.09
237 238 4.427312 CAACGAACCGGTACTAATTAGCT 58.573 43.478 8.00 0.00 0.00 3.32
238 239 4.298744 ACGAACCGGTACTAATTAGCTC 57.701 45.455 8.00 5.77 0.00 4.09
239 240 3.067320 ACGAACCGGTACTAATTAGCTCC 59.933 47.826 8.00 13.06 0.00 4.70
240 241 3.636381 GAACCGGTACTAATTAGCTCCG 58.364 50.000 27.51 27.51 40.20 4.63
241 242 1.339291 ACCGGTACTAATTAGCTCCGC 59.661 52.381 28.37 11.33 39.64 5.54
242 243 1.336609 CCGGTACTAATTAGCTCCGCC 60.337 57.143 28.37 16.61 39.64 6.13
243 244 1.336609 CGGTACTAATTAGCTCCGCCC 60.337 57.143 25.15 11.76 36.59 6.13
244 245 1.336609 GGTACTAATTAGCTCCGCCCG 60.337 57.143 12.54 0.00 0.00 6.13
245 246 0.316204 TACTAATTAGCTCCGCCCGC 59.684 55.000 12.54 0.00 0.00 6.13
246 247 1.668151 CTAATTAGCTCCGCCCGCC 60.668 63.158 0.00 0.00 0.00 6.13
247 248 2.100879 CTAATTAGCTCCGCCCGCCT 62.101 60.000 0.00 0.00 0.00 5.52
248 249 0.828762 TAATTAGCTCCGCCCGCCTA 60.829 55.000 0.00 0.00 0.00 3.93
249 250 2.100879 AATTAGCTCCGCCCGCCTAG 62.101 60.000 0.00 0.00 0.00 3.02
258 259 4.137872 CCCGCCTAGCCGTTCGAA 62.138 66.667 0.00 0.00 0.00 3.71
259 260 2.884207 CCGCCTAGCCGTTCGAAC 60.884 66.667 18.47 18.47 0.00 3.95
260 261 2.884207 CGCCTAGCCGTTCGAACC 60.884 66.667 22.07 9.45 0.00 3.62
261 262 2.884207 GCCTAGCCGTTCGAACCG 60.884 66.667 22.07 16.66 0.00 4.44
267 268 2.259204 CCGTTCGAACCGGCACTA 59.741 61.111 22.07 0.00 38.85 2.74
268 269 1.373246 CCGTTCGAACCGGCACTAA 60.373 57.895 22.07 0.00 38.85 2.24
269 270 0.738412 CCGTTCGAACCGGCACTAAT 60.738 55.000 22.07 0.00 38.85 1.73
270 271 0.368907 CGTTCGAACCGGCACTAATG 59.631 55.000 22.07 0.54 0.00 1.90
271 272 0.725117 GTTCGAACCGGCACTAATGG 59.275 55.000 17.68 0.00 0.00 3.16
272 273 0.609151 TTCGAACCGGCACTAATGGA 59.391 50.000 0.00 0.00 0.00 3.41
273 274 0.108520 TCGAACCGGCACTAATGGAC 60.109 55.000 0.00 0.00 0.00 4.02
274 275 0.390603 CGAACCGGCACTAATGGACA 60.391 55.000 0.00 0.00 0.00 4.02
275 276 1.084289 GAACCGGCACTAATGGACAC 58.916 55.000 0.00 0.00 0.00 3.67
276 277 0.398696 AACCGGCACTAATGGACACA 59.601 50.000 0.00 0.00 0.00 3.72
277 278 0.618458 ACCGGCACTAATGGACACAT 59.382 50.000 0.00 0.00 39.54 3.21
279 280 1.401552 CCGGCACTAATGGACACATTG 59.598 52.381 3.39 0.00 46.37 2.82
280 281 1.401552 CGGCACTAATGGACACATTGG 59.598 52.381 3.39 3.09 46.37 3.16
291 292 2.897780 CACATTGGTGCCGGTTTTG 58.102 52.632 1.90 0.00 38.37 2.44
292 293 0.103937 CACATTGGTGCCGGTTTTGT 59.896 50.000 1.90 0.00 38.37 2.83
293 294 1.338337 CACATTGGTGCCGGTTTTGTA 59.662 47.619 1.90 0.00 38.37 2.41
294 295 2.032620 ACATTGGTGCCGGTTTTGTAA 58.967 42.857 1.90 0.00 0.00 2.41
295 296 2.223852 ACATTGGTGCCGGTTTTGTAAC 60.224 45.455 1.90 0.00 0.00 2.50
296 297 1.471119 TTGGTGCCGGTTTTGTAACA 58.529 45.000 1.90 0.00 35.92 2.41
297 298 1.471119 TGGTGCCGGTTTTGTAACAA 58.529 45.000 1.90 0.00 35.92 2.83
298 299 1.822990 TGGTGCCGGTTTTGTAACAAA 59.177 42.857 1.90 0.00 35.92 2.83
299 300 2.195096 GGTGCCGGTTTTGTAACAAAC 58.805 47.619 1.90 0.00 35.92 2.93
300 301 2.195096 GTGCCGGTTTTGTAACAAACC 58.805 47.619 1.90 4.75 43.72 3.27
306 307 4.898829 GGTTTTGTAACAAACCGGTACT 57.101 40.909 8.00 0.00 39.03 2.73
308 309 6.370433 GGTTTTGTAACAAACCGGTACTAA 57.630 37.500 8.00 1.87 39.03 2.24
309 310 6.969366 GGTTTTGTAACAAACCGGTACTAAT 58.031 36.000 8.00 0.00 39.03 1.73
310 311 6.857451 GGTTTTGTAACAAACCGGTACTAATG 59.143 38.462 8.00 5.07 39.03 1.90
311 312 7.416817 GTTTTGTAACAAACCGGTACTAATGT 58.583 34.615 8.00 5.77 34.31 2.71
312 313 6.542574 TTGTAACAAACCGGTACTAATGTG 57.457 37.500 8.00 0.06 0.00 3.21
313 314 4.451774 TGTAACAAACCGGTACTAATGTGC 59.548 41.667 8.00 6.43 0.00 4.57
314 315 3.412237 ACAAACCGGTACTAATGTGCT 57.588 42.857 8.00 0.00 0.00 4.40
315 316 3.746940 ACAAACCGGTACTAATGTGCTT 58.253 40.909 8.00 0.00 0.00 3.91
316 317 3.749609 ACAAACCGGTACTAATGTGCTTC 59.250 43.478 8.00 0.00 0.00 3.86
317 318 3.688694 AACCGGTACTAATGTGCTTCA 57.311 42.857 8.00 0.00 0.00 3.02
318 319 2.968675 ACCGGTACTAATGTGCTTCAC 58.031 47.619 4.49 0.00 34.56 3.18
327 328 2.853159 TGTGCTTCACATTAGGCCG 58.147 52.632 0.00 0.00 39.62 6.13
328 329 0.036164 TGTGCTTCACATTAGGCCGT 59.964 50.000 0.00 0.00 39.62 5.68
329 330 1.165270 GTGCTTCACATTAGGCCGTT 58.835 50.000 0.00 0.00 34.08 4.44
330 331 1.539827 GTGCTTCACATTAGGCCGTTT 59.460 47.619 0.00 0.00 34.08 3.60
331 332 2.030274 GTGCTTCACATTAGGCCGTTTT 60.030 45.455 0.00 0.00 34.08 2.43
332 333 2.625790 TGCTTCACATTAGGCCGTTTTT 59.374 40.909 0.00 0.00 0.00 1.94
333 334 3.242518 GCTTCACATTAGGCCGTTTTTC 58.757 45.455 0.00 0.00 0.00 2.29
334 335 3.057526 GCTTCACATTAGGCCGTTTTTCT 60.058 43.478 0.00 0.00 0.00 2.52
335 336 4.155280 GCTTCACATTAGGCCGTTTTTCTA 59.845 41.667 0.00 0.00 0.00 2.10
336 337 5.616488 TTCACATTAGGCCGTTTTTCTAC 57.384 39.130 0.00 0.00 0.00 2.59
337 338 4.901868 TCACATTAGGCCGTTTTTCTACT 58.098 39.130 0.00 0.00 0.00 2.57
338 339 6.040209 TCACATTAGGCCGTTTTTCTACTA 57.960 37.500 0.00 0.00 0.00 1.82
339 340 6.103997 TCACATTAGGCCGTTTTTCTACTAG 58.896 40.000 0.00 0.00 0.00 2.57
340 341 5.873164 CACATTAGGCCGTTTTTCTACTAGT 59.127 40.000 0.00 0.00 0.00 2.57
341 342 5.873164 ACATTAGGCCGTTTTTCTACTAGTG 59.127 40.000 5.39 0.00 0.00 2.74
354 355 0.322008 ACTAGTGAAGCTTGCTGCCC 60.322 55.000 2.10 0.00 44.23 5.36
488 491 1.112113 CAGTACTCACCGTGGGCTAT 58.888 55.000 0.00 0.00 0.00 2.97
616 619 1.268899 CGACTGTTTCGTCAGGGTACT 59.731 52.381 0.00 0.00 43.24 2.73
620 629 2.299297 CTGTTTCGTCAGGGTACTTCCT 59.701 50.000 0.00 0.00 37.71 3.36
621 630 3.499338 TGTTTCGTCAGGGTACTTCCTA 58.501 45.455 0.00 0.00 34.92 2.94
622 631 3.256631 TGTTTCGTCAGGGTACTTCCTAC 59.743 47.826 0.00 0.00 34.92 3.18
623 632 3.446442 TTCGTCAGGGTACTTCCTACT 57.554 47.619 0.00 0.00 34.92 2.57
624 633 4.574674 TTCGTCAGGGTACTTCCTACTA 57.425 45.455 0.00 0.00 34.92 1.82
625 634 3.878778 TCGTCAGGGTACTTCCTACTAC 58.121 50.000 0.00 0.00 34.92 2.73
653 671 9.797556 GTGTATATAATTCATGCTACGTCCATA 57.202 33.333 0.00 0.00 0.00 2.74
654 672 9.797556 TGTATATAATTCATGCTACGTCCATAC 57.202 33.333 0.00 0.00 0.00 2.39
655 673 9.797556 GTATATAATTCATGCTACGTCCATACA 57.202 33.333 0.00 0.00 0.00 2.29
657 675 5.929697 AATTCATGCTACGTCCATACATG 57.070 39.130 0.00 0.28 39.53 3.21
658 676 4.400529 TTCATGCTACGTCCATACATGT 57.599 40.909 2.69 2.69 39.27 3.21
659 677 3.716601 TCATGCTACGTCCATACATGTG 58.283 45.455 9.11 0.00 39.27 3.21
660 678 2.595124 TGCTACGTCCATACATGTGG 57.405 50.000 9.11 1.72 40.76 4.17
661 679 2.104170 TGCTACGTCCATACATGTGGA 58.896 47.619 9.11 4.58 45.78 4.02
725 770 2.907634 TGTTTGTGAGGCACTAACGAA 58.092 42.857 15.96 2.18 44.69 3.85
760 808 1.888436 TTGCGATGCCTCGGTTCTCT 61.888 55.000 13.37 0.00 45.15 3.10
773 821 2.878406 CGGTTCTCTTTGACAACACCAT 59.122 45.455 0.00 0.00 0.00 3.55
784 832 3.444818 AACACCATGGCCAACCCGT 62.445 57.895 10.96 1.79 35.87 5.28
873 921 2.301583 GGAGAAGCTTGAGAAGGAGTGT 59.698 50.000 2.10 0.00 0.00 3.55
892 940 4.988716 AGGGGGTCGTCTCGTGCA 62.989 66.667 0.00 0.00 0.00 4.57
913 961 3.667429 GACATCGTGGCCTTTGCGC 62.667 63.158 3.32 0.00 38.85 6.09
938 989 0.727398 GACGCCACCATCTTGCTAAC 59.273 55.000 0.00 0.00 0.00 2.34
941 992 0.392461 GCCACCATCTTGCTAACCGA 60.392 55.000 0.00 0.00 0.00 4.69
974 1025 1.409427 CGGCTTCCTCGACTTCCTATT 59.591 52.381 0.00 0.00 0.00 1.73
1008 1059 2.034879 CAACTTCGACATGCCGGCT 61.035 57.895 29.70 7.33 0.00 5.52
1072 1123 3.829311 AACCTGCCCCCTCCCTTCA 62.829 63.158 0.00 0.00 0.00 3.02
1074 1125 4.101448 CTGCCCCCTCCCTTCACG 62.101 72.222 0.00 0.00 0.00 4.35
1082 1133 1.676014 CCCTCCCTTCACGAACATCAC 60.676 57.143 0.00 0.00 0.00 3.06
1089 1140 3.393800 CTTCACGAACATCACTGTCCTT 58.606 45.455 0.00 0.00 33.36 3.36
1221 1281 0.104986 ACCCCTCATCGATGGATCCA 60.105 55.000 24.61 18.88 0.00 3.41
1230 1290 4.101585 TCATCGATGGATCCAACTTTAGCT 59.898 41.667 24.61 0.00 0.00 3.32
1345 1405 1.727467 GTGCAGAAACGCAAGGTGT 59.273 52.632 0.00 0.00 45.14 4.16
1380 1440 0.599466 CCGCGCTCATGTCATCTGAT 60.599 55.000 5.56 0.00 0.00 2.90
1511 1572 0.178068 GGGCAGATCCGAAAGCACTA 59.822 55.000 0.00 0.00 34.94 2.74
1514 1575 1.405526 GCAGATCCGAAAGCACTACCA 60.406 52.381 0.00 0.00 0.00 3.25
1589 1650 5.986501 ATCTTAAGTTCTTGACTCCTCGT 57.013 39.130 1.63 0.00 37.72 4.18
1614 1675 5.837437 ACCGAGAGTAATCAGAATAAGCTG 58.163 41.667 0.00 0.00 37.24 4.24
1643 1704 7.504924 TTTTGTGTGTGCTAGCTAAATTACT 57.495 32.000 17.23 0.00 0.00 2.24
1653 1714 5.220681 GCTAGCTAAATTACTGGTGCTGTTC 60.221 44.000 7.70 0.00 32.72 3.18
1759 1825 9.995003 GAGAGATGATATTGTCAAGGTATCTTT 57.005 33.333 7.41 2.86 40.97 2.52
1878 1944 8.074370 GTCCCAAAGTAAGAGTTGTTGATTTAC 58.926 37.037 0.00 0.00 0.00 2.01
1885 1951 9.837525 AGTAAGAGTTGTTGATTTACTACTACG 57.162 33.333 0.00 0.00 34.91 3.51
1954 2021 8.506168 TGCCAAAGAAGGTTATACTTAATCAG 57.494 34.615 0.00 0.00 0.00 2.90
1960 2027 6.979238 AGAAGGTTATACTTAATCAGCGACAC 59.021 38.462 0.00 0.00 0.00 3.67
1970 2037 8.094798 ACTTAATCAGCGACACTTATTTTGAA 57.905 30.769 0.00 0.00 0.00 2.69
1974 2041 5.747565 TCAGCGACACTTATTTTGAAACAG 58.252 37.500 0.00 0.00 0.00 3.16
1983 2050 7.996644 ACACTTATTTTGAAACAGAGGGAGTAA 59.003 33.333 0.00 0.00 0.00 2.24
2073 2141 3.347958 TTTCACGCAAAACTAGCAAGG 57.652 42.857 0.00 0.00 0.00 3.61
2074 2142 0.591170 TCACGCAAAACTAGCAAGGC 59.409 50.000 0.00 0.00 0.00 4.35
2105 2173 4.236935 CATTTTCACCTATGTGCACCAAC 58.763 43.478 15.69 0.00 42.46 3.77
2107 2175 2.647683 TCACCTATGTGCACCAACAA 57.352 45.000 15.69 0.00 42.46 2.83
2113 2181 5.645929 CACCTATGTGCACCAACAACTTATA 59.354 40.000 15.69 1.00 35.31 0.98
2189 2257 5.009631 TGGCTATCACAAAGTAAAGTGCAT 58.990 37.500 0.00 0.00 35.76 3.96
2203 2271 3.283259 AGTGCATAAGTAAAGGGCTCC 57.717 47.619 0.00 0.00 0.00 4.70
2206 2274 1.134189 GCATAAGTAAAGGGCTCCGGT 60.134 52.381 0.00 0.00 0.00 5.28
2217 2285 2.091222 AGGGCTCCGGTAAGAGATAACT 60.091 50.000 0.00 0.00 35.82 2.24
2225 2293 3.130516 CGGTAAGAGATAACTGAGGCACA 59.869 47.826 0.00 0.00 0.00 4.57
2257 2325 2.754946 TGTATCCCGAAGTTCACACC 57.245 50.000 3.32 0.00 0.00 4.16
2258 2326 1.276989 TGTATCCCGAAGTTCACACCC 59.723 52.381 3.32 0.00 0.00 4.61
2260 2328 1.064825 ATCCCGAAGTTCACACCCTT 58.935 50.000 3.32 0.00 0.00 3.95
2263 2331 0.817634 CCGAAGTTCACACCCTTGCA 60.818 55.000 3.32 0.00 0.00 4.08
2264 2332 0.588252 CGAAGTTCACACCCTTGCAG 59.412 55.000 3.32 0.00 0.00 4.41
2268 2336 1.143684 AGTTCACACCCTTGCAGATGT 59.856 47.619 0.00 0.00 0.00 3.06
2285 2353 3.689649 AGATGTTAATCACCGTTTGGAGC 59.310 43.478 0.00 0.00 39.21 4.70
2292 2360 3.808036 CCGTTTGGAGCGGTATGG 58.192 61.111 0.00 0.00 43.84 2.74
2303 2371 2.024918 CGGTATGGAGGCACAATGC 58.975 57.895 0.00 0.00 44.08 3.56
2315 2384 1.608801 GCACAATGCTCCCCAAAAAGG 60.609 52.381 0.00 0.00 40.96 3.11
2321 2390 1.177401 GCTCCCCAAAAAGGCACTAG 58.823 55.000 0.00 0.00 38.49 2.57
2371 2440 3.103738 GCAATGCAAGATGTCGTGATTC 58.896 45.455 0.00 0.00 0.00 2.52
2372 2441 3.688272 CAATGCAAGATGTCGTGATTCC 58.312 45.455 0.00 0.00 0.00 3.01
2415 2484 2.350498 GTCACCGAACCCATACAAATCG 59.650 50.000 0.00 0.00 0.00 3.34
2456 2525 1.950909 CGAACCCTTACACTTTGGCAA 59.049 47.619 0.00 0.00 0.00 4.52
2462 2531 2.035832 CCTTACACTTTGGCAACCCTTG 59.964 50.000 0.00 0.00 0.00 3.61
2491 2560 5.130643 TGGTTACCGATACCCATACAAATCA 59.869 40.000 0.00 0.00 34.66 2.57
2492 2561 6.183361 TGGTTACCGATACCCATACAAATCAT 60.183 38.462 0.00 0.00 34.66 2.45
2499 2568 1.613437 CCCATACAAATCATTCGGGGC 59.387 52.381 0.00 0.00 0.00 5.80
2505 2574 3.099141 ACAAATCATTCGGGGCAATCTT 58.901 40.909 0.00 0.00 0.00 2.40
2518 2587 5.124776 CGGGGCAATCTTCACAACTTAATTA 59.875 40.000 0.00 0.00 0.00 1.40
2526 2595 7.554959 TCTTCACAACTTAATTAGAGACCCT 57.445 36.000 2.84 0.00 0.00 4.34
2527 2596 7.386851 TCTTCACAACTTAATTAGAGACCCTG 58.613 38.462 2.84 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.929697 TCTCAAACTATCACAAGCACTTG 57.070 39.130 8.82 8.82 45.58 3.16
1 2 6.058183 ACTTCTCAAACTATCACAAGCACTT 58.942 36.000 0.00 0.00 0.00 3.16
2 3 5.615289 ACTTCTCAAACTATCACAAGCACT 58.385 37.500 0.00 0.00 0.00 4.40
3 4 5.931441 ACTTCTCAAACTATCACAAGCAC 57.069 39.130 0.00 0.00 0.00 4.40
4 5 6.989759 TGTTACTTCTCAAACTATCACAAGCA 59.010 34.615 0.00 0.00 0.00 3.91
5 6 7.421530 TGTTACTTCTCAAACTATCACAAGC 57.578 36.000 0.00 0.00 0.00 4.01
16 17 9.802039 ACCACCTTAAATATGTTACTTCTCAAA 57.198 29.630 0.00 0.00 0.00 2.69
24 25 9.859427 GGGTTTTTACCACCTTAAATATGTTAC 57.141 33.333 0.00 0.00 34.36 2.50
25 26 9.825706 AGGGTTTTTACCACCTTAAATATGTTA 57.174 29.630 0.00 0.00 34.36 2.41
26 27 8.590204 CAGGGTTTTTACCACCTTAAATATGTT 58.410 33.333 0.00 0.00 34.36 2.71
27 28 7.731235 ACAGGGTTTTTACCACCTTAAATATGT 59.269 33.333 0.00 0.00 34.36 2.29
28 29 8.129496 ACAGGGTTTTTACCACCTTAAATATG 57.871 34.615 0.00 0.00 34.36 1.78
29 30 8.730093 AACAGGGTTTTTACCACCTTAAATAT 57.270 30.769 0.00 0.00 34.36 1.28
30 31 9.299465 CTAACAGGGTTTTTACCACCTTAAATA 57.701 33.333 0.00 0.00 34.36 1.40
31 32 7.256048 GCTAACAGGGTTTTTACCACCTTAAAT 60.256 37.037 0.00 0.00 34.36 1.40
32 33 6.040729 GCTAACAGGGTTTTTACCACCTTAAA 59.959 38.462 0.00 0.00 34.36 1.52
33 34 5.535783 GCTAACAGGGTTTTTACCACCTTAA 59.464 40.000 0.00 0.00 34.36 1.85
34 35 5.072055 GCTAACAGGGTTTTTACCACCTTA 58.928 41.667 0.00 0.00 34.36 2.69
35 36 3.893200 GCTAACAGGGTTTTTACCACCTT 59.107 43.478 0.00 0.00 34.36 3.50
36 37 3.493334 GCTAACAGGGTTTTTACCACCT 58.507 45.455 0.00 0.00 34.36 4.00
37 38 2.559668 GGCTAACAGGGTTTTTACCACC 59.440 50.000 0.00 0.00 0.00 4.61
38 39 2.227149 CGGCTAACAGGGTTTTTACCAC 59.773 50.000 0.00 0.00 0.00 4.16
39 40 2.106166 TCGGCTAACAGGGTTTTTACCA 59.894 45.455 0.00 0.00 0.00 3.25
40 41 2.745821 CTCGGCTAACAGGGTTTTTACC 59.254 50.000 0.00 0.00 0.00 2.85
41 42 2.161012 GCTCGGCTAACAGGGTTTTTAC 59.839 50.000 0.00 0.00 0.00 2.01
42 43 2.429478 GCTCGGCTAACAGGGTTTTTA 58.571 47.619 0.00 0.00 0.00 1.52
43 44 1.244816 GCTCGGCTAACAGGGTTTTT 58.755 50.000 0.00 0.00 0.00 1.94
44 45 0.953960 CGCTCGGCTAACAGGGTTTT 60.954 55.000 0.00 0.00 0.00 2.43
45 46 1.375523 CGCTCGGCTAACAGGGTTT 60.376 57.895 0.00 0.00 0.00 3.27
46 47 2.227089 CTCGCTCGGCTAACAGGGTT 62.227 60.000 0.00 0.00 0.00 4.11
47 48 2.678934 TCGCTCGGCTAACAGGGT 60.679 61.111 0.00 0.00 0.00 4.34
48 49 2.105128 CTCGCTCGGCTAACAGGG 59.895 66.667 0.00 0.00 0.00 4.45
49 50 2.105128 CCTCGCTCGGCTAACAGG 59.895 66.667 0.00 0.00 0.00 4.00
50 51 1.517257 CACCTCGCTCGGCTAACAG 60.517 63.158 0.00 0.00 0.00 3.16
51 52 2.571757 CACCTCGCTCGGCTAACA 59.428 61.111 0.00 0.00 0.00 2.41
52 53 2.202756 CCACCTCGCTCGGCTAAC 60.203 66.667 0.00 0.00 0.00 2.34
53 54 3.458163 CCCACCTCGCTCGGCTAA 61.458 66.667 0.00 0.00 0.00 3.09
54 55 4.435970 TCCCACCTCGCTCGGCTA 62.436 66.667 0.00 0.00 0.00 3.93
57 58 1.601419 TTTAGTCCCACCTCGCTCGG 61.601 60.000 0.00 0.00 0.00 4.63
58 59 0.245539 TTTTAGTCCCACCTCGCTCG 59.754 55.000 0.00 0.00 0.00 5.03
59 60 2.467566 TTTTTAGTCCCACCTCGCTC 57.532 50.000 0.00 0.00 0.00 5.03
75 76 5.789521 AGGTTTGTAGTTGCAGTTGTTTTT 58.210 33.333 0.00 0.00 0.00 1.94
76 77 5.185056 AGAGGTTTGTAGTTGCAGTTGTTTT 59.815 36.000 0.00 0.00 0.00 2.43
77 78 4.705023 AGAGGTTTGTAGTTGCAGTTGTTT 59.295 37.500 0.00 0.00 0.00 2.83
78 79 4.270008 AGAGGTTTGTAGTTGCAGTTGTT 58.730 39.130 0.00 0.00 0.00 2.83
79 80 3.886123 AGAGGTTTGTAGTTGCAGTTGT 58.114 40.909 0.00 0.00 0.00 3.32
80 81 5.057149 ACTAGAGGTTTGTAGTTGCAGTTG 58.943 41.667 0.00 0.00 29.71 3.16
81 82 5.291905 ACTAGAGGTTTGTAGTTGCAGTT 57.708 39.130 0.00 0.00 29.71 3.16
82 83 4.957684 ACTAGAGGTTTGTAGTTGCAGT 57.042 40.909 0.00 0.00 29.71 4.40
83 84 5.169295 GGTACTAGAGGTTTGTAGTTGCAG 58.831 45.833 0.00 0.00 35.29 4.41
84 85 4.321452 CGGTACTAGAGGTTTGTAGTTGCA 60.321 45.833 0.00 0.00 35.29 4.08
85 86 4.171754 CGGTACTAGAGGTTTGTAGTTGC 58.828 47.826 0.00 0.00 35.29 4.17
86 87 4.219288 ACCGGTACTAGAGGTTTGTAGTTG 59.781 45.833 4.49 0.00 35.29 3.16
87 88 4.411013 ACCGGTACTAGAGGTTTGTAGTT 58.589 43.478 4.49 0.00 35.29 2.24
88 89 4.039603 ACCGGTACTAGAGGTTTGTAGT 57.960 45.455 4.49 0.00 37.23 2.73
95 96 1.897802 CCACAAACCGGTACTAGAGGT 59.102 52.381 8.00 0.00 40.50 3.85
96 97 1.897802 ACCACAAACCGGTACTAGAGG 59.102 52.381 8.00 8.40 34.02 3.69
97 98 3.129988 CCTACCACAAACCGGTACTAGAG 59.870 52.174 8.00 0.00 37.99 2.43
98 99 3.091545 CCTACCACAAACCGGTACTAGA 58.908 50.000 8.00 0.00 37.99 2.43
99 100 3.091545 TCCTACCACAAACCGGTACTAG 58.908 50.000 8.00 0.00 37.99 2.57
100 101 3.168035 TCCTACCACAAACCGGTACTA 57.832 47.619 8.00 0.00 37.99 1.82
101 102 2.014010 TCCTACCACAAACCGGTACT 57.986 50.000 8.00 0.00 37.99 2.73
102 103 2.416747 GTTCCTACCACAAACCGGTAC 58.583 52.381 8.00 0.00 37.99 3.34
103 104 1.347378 GGTTCCTACCACAAACCGGTA 59.653 52.381 8.00 0.00 44.36 4.02
104 105 0.109153 GGTTCCTACCACAAACCGGT 59.891 55.000 0.00 0.00 44.36 5.28
105 106 2.936928 GGTTCCTACCACAAACCGG 58.063 57.895 0.00 0.00 44.36 5.28
107 108 0.109153 ACCGGTTCCTACCACAAACC 59.891 55.000 0.00 0.00 45.31 3.27
108 109 2.037641 AGTACCGGTTCCTACCACAAAC 59.962 50.000 15.04 0.00 45.31 2.93
109 110 2.328319 AGTACCGGTTCCTACCACAAA 58.672 47.619 15.04 0.00 45.31 2.83
110 111 2.014010 AGTACCGGTTCCTACCACAA 57.986 50.000 15.04 0.00 45.31 3.33
111 112 2.897271 TAGTACCGGTTCCTACCACA 57.103 50.000 15.04 0.00 45.31 4.17
112 113 3.118992 CCTTTAGTACCGGTTCCTACCAC 60.119 52.174 15.04 1.99 45.31 4.16
113 114 3.099141 CCTTTAGTACCGGTTCCTACCA 58.901 50.000 15.04 2.44 45.31 3.25
114 115 2.159043 GCCTTTAGTACCGGTTCCTACC 60.159 54.545 15.04 0.00 41.33 3.18
115 116 2.480244 CGCCTTTAGTACCGGTTCCTAC 60.480 54.545 15.04 4.32 0.00 3.18
116 117 1.750778 CGCCTTTAGTACCGGTTCCTA 59.249 52.381 15.04 11.21 0.00 2.94
117 118 0.533951 CGCCTTTAGTACCGGTTCCT 59.466 55.000 15.04 12.37 0.00 3.36
118 119 1.086067 GCGCCTTTAGTACCGGTTCC 61.086 60.000 15.04 3.66 0.00 3.62
119 120 0.108472 AGCGCCTTTAGTACCGGTTC 60.108 55.000 15.04 8.12 0.00 3.62
120 121 0.390735 CAGCGCCTTTAGTACCGGTT 60.391 55.000 15.04 0.00 0.00 4.44
121 122 1.217244 CAGCGCCTTTAGTACCGGT 59.783 57.895 13.98 13.98 0.00 5.28
122 123 1.520787 CCAGCGCCTTTAGTACCGG 60.521 63.158 2.29 0.00 0.00 5.28
123 124 1.082117 CACCAGCGCCTTTAGTACCG 61.082 60.000 2.29 0.00 0.00 4.02
124 125 0.743345 CCACCAGCGCCTTTAGTACC 60.743 60.000 2.29 0.00 0.00 3.34
125 126 0.743345 CCCACCAGCGCCTTTAGTAC 60.743 60.000 2.29 0.00 0.00 2.73
126 127 1.600107 CCCACCAGCGCCTTTAGTA 59.400 57.895 2.29 0.00 0.00 1.82
127 128 2.351276 CCCACCAGCGCCTTTAGT 59.649 61.111 2.29 0.00 0.00 2.24
128 129 2.438434 CCCCACCAGCGCCTTTAG 60.438 66.667 2.29 0.00 0.00 1.85
129 130 4.733542 GCCCCACCAGCGCCTTTA 62.734 66.667 2.29 0.00 0.00 1.85
152 153 4.735132 ATGTGTCACGCGGTCCGG 62.735 66.667 14.38 5.79 42.52 5.14
153 154 3.179265 GATGTGTCACGCGGTCCG 61.179 66.667 12.47 6.99 44.21 4.79
154 155 2.813908 GGATGTGTCACGCGGTCC 60.814 66.667 12.47 2.23 0.00 4.46
155 156 1.805945 GAGGATGTGTCACGCGGTC 60.806 63.158 12.47 0.12 0.00 4.79
156 157 1.816863 AAGAGGATGTGTCACGCGGT 61.817 55.000 12.47 0.00 0.00 5.68
157 158 0.670546 AAAGAGGATGTGTCACGCGG 60.671 55.000 12.47 0.00 0.00 6.46
158 159 1.920574 CTAAAGAGGATGTGTCACGCG 59.079 52.381 3.53 3.53 0.00 6.01
159 160 2.960819 ACTAAAGAGGATGTGTCACGC 58.039 47.619 0.00 0.00 0.00 5.34
160 161 4.421948 GGTACTAAAGAGGATGTGTCACG 58.578 47.826 0.00 0.00 0.00 4.35
161 162 4.421948 CGGTACTAAAGAGGATGTGTCAC 58.578 47.826 0.00 0.00 0.00 3.67
162 163 3.446161 CCGGTACTAAAGAGGATGTGTCA 59.554 47.826 0.00 0.00 0.00 3.58
163 164 3.446516 ACCGGTACTAAAGAGGATGTGTC 59.553 47.826 4.49 0.00 0.00 3.67
164 165 3.438183 ACCGGTACTAAAGAGGATGTGT 58.562 45.455 4.49 0.00 0.00 3.72
165 166 4.430908 GAACCGGTACTAAAGAGGATGTG 58.569 47.826 8.00 0.00 0.00 3.21
166 167 3.129988 CGAACCGGTACTAAAGAGGATGT 59.870 47.826 8.00 0.00 0.00 3.06
167 168 3.129988 ACGAACCGGTACTAAAGAGGATG 59.870 47.826 8.00 0.00 0.00 3.51
168 169 3.129988 CACGAACCGGTACTAAAGAGGAT 59.870 47.826 8.00 0.00 0.00 3.24
169 170 2.489329 CACGAACCGGTACTAAAGAGGA 59.511 50.000 8.00 0.00 0.00 3.71
170 171 2.872370 CACGAACCGGTACTAAAGAGG 58.128 52.381 8.00 0.00 0.00 3.69
171 172 2.257034 GCACGAACCGGTACTAAAGAG 58.743 52.381 8.00 0.00 0.00 2.85
172 173 1.067635 GGCACGAACCGGTACTAAAGA 60.068 52.381 8.00 0.00 0.00 2.52
173 174 1.337074 TGGCACGAACCGGTACTAAAG 60.337 52.381 8.00 0.00 0.00 1.85
174 175 0.678395 TGGCACGAACCGGTACTAAA 59.322 50.000 8.00 0.00 0.00 1.85
175 176 0.038343 GTGGCACGAACCGGTACTAA 60.038 55.000 8.00 0.00 0.00 2.24
176 177 1.586028 GTGGCACGAACCGGTACTA 59.414 57.895 8.00 0.00 0.00 1.82
177 178 2.341176 GTGGCACGAACCGGTACT 59.659 61.111 8.00 0.00 0.00 2.73
178 179 3.107661 CGTGGCACGAACCGGTAC 61.108 66.667 34.85 0.00 46.05 3.34
187 188 2.198906 TAGTACCGGTTCGTGGCACG 62.199 60.000 32.75 32.75 44.19 5.34
188 189 0.038343 TTAGTACCGGTTCGTGGCAC 60.038 55.000 15.04 7.79 0.00 5.01
189 190 0.678395 TTTAGTACCGGTTCGTGGCA 59.322 50.000 15.04 0.00 0.00 4.92
190 191 1.353076 CTTTAGTACCGGTTCGTGGC 58.647 55.000 15.04 0.00 0.00 5.01
191 192 1.273327 ACCTTTAGTACCGGTTCGTGG 59.727 52.381 15.04 12.34 0.00 4.94
192 193 2.730550 ACCTTTAGTACCGGTTCGTG 57.269 50.000 15.04 0.51 0.00 4.35
193 194 3.392882 CAAACCTTTAGTACCGGTTCGT 58.607 45.455 15.04 0.00 39.97 3.85
194 195 2.158254 GCAAACCTTTAGTACCGGTTCG 59.842 50.000 15.04 0.00 39.97 3.95
195 196 3.140623 TGCAAACCTTTAGTACCGGTTC 58.859 45.455 15.04 8.12 39.97 3.62
196 197 3.211718 TGCAAACCTTTAGTACCGGTT 57.788 42.857 15.04 0.00 42.52 4.44
197 198 2.880268 GTTGCAAACCTTTAGTACCGGT 59.120 45.455 13.98 13.98 42.21 5.28
198 199 2.096119 CGTTGCAAACCTTTAGTACCGG 60.096 50.000 0.00 0.00 46.28 5.28
199 200 2.801679 TCGTTGCAAACCTTTAGTACCG 59.198 45.455 0.00 0.00 46.28 4.02
200 201 4.530388 GTTCGTTGCAAACCTTTAGTACC 58.470 43.478 0.00 0.00 46.28 3.34
201 202 4.530388 GGTTCGTTGCAAACCTTTAGTAC 58.470 43.478 10.91 0.00 46.28 2.73
202 203 3.248125 CGGTTCGTTGCAAACCTTTAGTA 59.752 43.478 15.12 0.00 46.28 1.82
203 204 2.032426 CGGTTCGTTGCAAACCTTTAGT 59.968 45.455 15.12 0.00 46.28 2.24
204 205 2.603652 CCGGTTCGTTGCAAACCTTTAG 60.604 50.000 15.12 1.92 46.28 1.85
205 206 1.334243 CCGGTTCGTTGCAAACCTTTA 59.666 47.619 15.12 0.00 46.28 1.85
206 207 0.101579 CCGGTTCGTTGCAAACCTTT 59.898 50.000 15.12 0.00 46.28 3.11
207 208 1.033202 ACCGGTTCGTTGCAAACCTT 61.033 50.000 15.12 1.61 46.28 3.50
208 209 0.179051 TACCGGTTCGTTGCAAACCT 60.179 50.000 15.04 2.35 46.28 3.50
209 210 0.041047 GTACCGGTTCGTTGCAAACC 60.041 55.000 15.04 4.47 46.28 3.27
210 211 0.939419 AGTACCGGTTCGTTGCAAAC 59.061 50.000 15.04 0.15 45.31 2.93
211 212 2.522836 TAGTACCGGTTCGTTGCAAA 57.477 45.000 15.04 0.00 0.00 3.68
212 213 2.522836 TTAGTACCGGTTCGTTGCAA 57.477 45.000 15.04 0.00 0.00 4.08
213 214 2.747396 ATTAGTACCGGTTCGTTGCA 57.253 45.000 15.04 0.00 0.00 4.08
214 215 3.000623 GCTAATTAGTACCGGTTCGTTGC 59.999 47.826 15.04 5.25 0.00 4.17
215 216 4.427312 AGCTAATTAGTACCGGTTCGTTG 58.573 43.478 15.04 0.00 0.00 4.10
216 217 4.440663 GGAGCTAATTAGTACCGGTTCGTT 60.441 45.833 15.04 8.52 0.00 3.85
217 218 3.067320 GGAGCTAATTAGTACCGGTTCGT 59.933 47.826 15.04 0.00 0.00 3.85
218 219 3.636381 GGAGCTAATTAGTACCGGTTCG 58.364 50.000 15.04 0.00 0.00 3.95
219 220 3.636381 CGGAGCTAATTAGTACCGGTTC 58.364 50.000 28.11 8.12 38.95 3.62
220 221 3.722728 CGGAGCTAATTAGTACCGGTT 57.277 47.619 28.11 0.00 38.95 4.44
241 242 4.137872 TTCGAACGGCTAGGCGGG 62.138 66.667 37.39 26.46 33.14 6.13
242 243 2.884207 GTTCGAACGGCTAGGCGG 60.884 66.667 37.39 22.58 35.02 6.13
243 244 2.884207 GGTTCGAACGGCTAGGCG 60.884 66.667 34.16 34.16 0.00 5.52
244 245 2.884207 CGGTTCGAACGGCTAGGC 60.884 66.667 21.34 6.15 0.00 3.93
245 246 2.202703 CCGGTTCGAACGGCTAGG 60.203 66.667 25.58 17.12 45.34 3.02
251 252 0.368907 CATTAGTGCCGGTTCGAACG 59.631 55.000 21.34 15.88 0.00 3.95
252 253 0.725117 CCATTAGTGCCGGTTCGAAC 59.275 55.000 20.14 20.14 0.00 3.95
253 254 0.609151 TCCATTAGTGCCGGTTCGAA 59.391 50.000 1.90 0.00 0.00 3.71
254 255 0.108520 GTCCATTAGTGCCGGTTCGA 60.109 55.000 1.90 0.00 0.00 3.71
255 256 0.390603 TGTCCATTAGTGCCGGTTCG 60.391 55.000 1.90 0.00 0.00 3.95
256 257 1.084289 GTGTCCATTAGTGCCGGTTC 58.916 55.000 1.90 0.00 0.00 3.62
257 258 0.398696 TGTGTCCATTAGTGCCGGTT 59.601 50.000 1.90 0.00 0.00 4.44
258 259 0.618458 ATGTGTCCATTAGTGCCGGT 59.382 50.000 1.90 0.00 0.00 5.28
259 260 1.401552 CAATGTGTCCATTAGTGCCGG 59.598 52.381 0.00 0.00 39.28 6.13
260 261 1.401552 CCAATGTGTCCATTAGTGCCG 59.598 52.381 0.00 0.00 39.28 5.69
261 262 2.164219 CACCAATGTGTCCATTAGTGCC 59.836 50.000 2.05 0.00 41.49 5.01
262 263 3.492421 CACCAATGTGTCCATTAGTGC 57.508 47.619 2.05 0.00 41.49 4.40
263 264 2.164219 GGCACCAATGTGTCCATTAGTG 59.836 50.000 8.87 8.87 46.77 2.74
264 265 2.446435 GGCACCAATGTGTCCATTAGT 58.554 47.619 0.00 0.00 44.65 2.24
265 266 1.401552 CGGCACCAATGTGTCCATTAG 59.598 52.381 0.00 0.00 44.39 1.73
266 267 1.458398 CGGCACCAATGTGTCCATTA 58.542 50.000 0.00 0.00 44.39 1.90
267 268 1.250154 CCGGCACCAATGTGTCCATT 61.250 55.000 0.00 0.00 44.39 3.16
268 269 1.678635 CCGGCACCAATGTGTCCAT 60.679 57.895 0.00 0.00 44.39 3.41
269 270 2.282110 CCGGCACCAATGTGTCCA 60.282 61.111 0.00 0.00 44.39 4.02
270 271 1.460273 AAACCGGCACCAATGTGTCC 61.460 55.000 0.00 0.00 44.39 4.02
271 272 0.387565 AAAACCGGCACCAATGTGTC 59.612 50.000 0.00 0.00 44.65 3.67
272 273 0.103937 CAAAACCGGCACCAATGTGT 59.896 50.000 0.00 0.00 44.65 3.72
273 274 0.103937 ACAAAACCGGCACCAATGTG 59.896 50.000 0.00 0.00 45.65 3.21
274 275 1.693627 TACAAAACCGGCACCAATGT 58.306 45.000 0.00 0.91 0.00 2.71
275 276 2.223829 TGTTACAAAACCGGCACCAATG 60.224 45.455 0.00 0.00 34.49 2.82
276 277 2.032620 TGTTACAAAACCGGCACCAAT 58.967 42.857 0.00 0.00 34.49 3.16
277 278 1.471119 TGTTACAAAACCGGCACCAA 58.529 45.000 0.00 0.00 34.49 3.67
278 279 1.471119 TTGTTACAAAACCGGCACCA 58.529 45.000 0.00 0.00 34.49 4.17
279 280 2.195096 GTTTGTTACAAAACCGGCACC 58.805 47.619 12.37 0.00 34.58 5.01
286 287 7.376601 CACATTAGTACCGGTTTGTTACAAAAC 59.623 37.037 15.04 15.18 38.96 2.43
287 288 7.416022 CACATTAGTACCGGTTTGTTACAAAA 58.584 34.615 15.04 3.52 0.00 2.44
288 289 6.513066 GCACATTAGTACCGGTTTGTTACAAA 60.513 38.462 15.04 6.41 0.00 2.83
289 290 5.049543 GCACATTAGTACCGGTTTGTTACAA 60.050 40.000 15.04 2.17 0.00 2.41
290 291 4.451774 GCACATTAGTACCGGTTTGTTACA 59.548 41.667 15.04 0.00 0.00 2.41
291 292 4.692155 AGCACATTAGTACCGGTTTGTTAC 59.308 41.667 15.04 3.84 0.00 2.50
292 293 4.897140 AGCACATTAGTACCGGTTTGTTA 58.103 39.130 15.04 0.00 0.00 2.41
293 294 3.746940 AGCACATTAGTACCGGTTTGTT 58.253 40.909 15.04 0.00 0.00 2.83
294 295 3.412237 AGCACATTAGTACCGGTTTGT 57.588 42.857 15.04 6.70 0.00 2.83
295 296 3.749088 TGAAGCACATTAGTACCGGTTTG 59.251 43.478 15.04 6.01 0.00 2.93
296 297 3.749609 GTGAAGCACATTAGTACCGGTTT 59.250 43.478 15.04 4.12 34.08 3.27
297 298 3.244284 TGTGAAGCACATTAGTACCGGTT 60.244 43.478 15.04 0.00 39.62 4.44
298 299 2.300723 TGTGAAGCACATTAGTACCGGT 59.699 45.455 13.98 13.98 39.62 5.28
299 300 2.967362 TGTGAAGCACATTAGTACCGG 58.033 47.619 0.00 0.00 39.62 5.28
310 311 1.165270 AACGGCCTAATGTGAAGCAC 58.835 50.000 0.00 0.00 34.56 4.40
311 312 1.904287 AAACGGCCTAATGTGAAGCA 58.096 45.000 0.00 0.00 0.00 3.91
312 313 3.057526 AGAAAAACGGCCTAATGTGAAGC 60.058 43.478 0.00 0.00 0.00 3.86
313 314 4.766404 AGAAAAACGGCCTAATGTGAAG 57.234 40.909 0.00 0.00 0.00 3.02
314 315 5.310451 AGTAGAAAAACGGCCTAATGTGAA 58.690 37.500 0.00 0.00 0.00 3.18
315 316 4.901868 AGTAGAAAAACGGCCTAATGTGA 58.098 39.130 0.00 0.00 0.00 3.58
316 317 5.873164 ACTAGTAGAAAAACGGCCTAATGTG 59.127 40.000 3.59 0.00 0.00 3.21
317 318 5.873164 CACTAGTAGAAAAACGGCCTAATGT 59.127 40.000 3.59 0.00 0.00 2.71
318 319 6.103997 TCACTAGTAGAAAAACGGCCTAATG 58.896 40.000 3.59 0.00 0.00 1.90
319 320 6.290294 TCACTAGTAGAAAAACGGCCTAAT 57.710 37.500 3.59 0.00 0.00 1.73
320 321 5.726980 TCACTAGTAGAAAAACGGCCTAA 57.273 39.130 3.59 0.00 0.00 2.69
321 322 5.717119 CTTCACTAGTAGAAAAACGGCCTA 58.283 41.667 3.59 0.00 0.00 3.93
322 323 4.566987 CTTCACTAGTAGAAAAACGGCCT 58.433 43.478 3.59 0.00 0.00 5.19
323 324 3.124806 GCTTCACTAGTAGAAAAACGGCC 59.875 47.826 3.59 0.00 0.00 6.13
324 325 3.995048 AGCTTCACTAGTAGAAAAACGGC 59.005 43.478 3.59 2.29 0.00 5.68
325 326 5.614887 GCAAGCTTCACTAGTAGAAAAACGG 60.615 44.000 3.59 0.00 0.00 4.44
326 327 5.177696 AGCAAGCTTCACTAGTAGAAAAACG 59.822 40.000 3.59 0.00 0.00 3.60
327 328 6.366630 CAGCAAGCTTCACTAGTAGAAAAAC 58.633 40.000 3.59 0.00 0.00 2.43
328 329 5.049405 GCAGCAAGCTTCACTAGTAGAAAAA 60.049 40.000 3.59 0.00 41.15 1.94
329 330 4.452455 GCAGCAAGCTTCACTAGTAGAAAA 59.548 41.667 3.59 0.00 41.15 2.29
330 331 3.997021 GCAGCAAGCTTCACTAGTAGAAA 59.003 43.478 3.59 0.00 41.15 2.52
331 332 3.589988 GCAGCAAGCTTCACTAGTAGAA 58.410 45.455 3.59 1.42 41.15 2.10
332 333 2.093973 GGCAGCAAGCTTCACTAGTAGA 60.094 50.000 3.59 0.00 44.79 2.59
333 334 2.275318 GGCAGCAAGCTTCACTAGTAG 58.725 52.381 0.00 0.00 44.79 2.57
334 335 1.066143 GGGCAGCAAGCTTCACTAGTA 60.066 52.381 0.00 0.00 44.79 1.82
335 336 0.322008 GGGCAGCAAGCTTCACTAGT 60.322 55.000 0.00 0.00 44.79 2.57
336 337 0.035630 AGGGCAGCAAGCTTCACTAG 60.036 55.000 0.00 0.00 44.79 2.57
337 338 0.321919 CAGGGCAGCAAGCTTCACTA 60.322 55.000 0.00 0.00 44.79 2.74
338 339 1.602888 CAGGGCAGCAAGCTTCACT 60.603 57.895 0.00 0.00 44.79 3.41
339 340 2.633509 CCAGGGCAGCAAGCTTCAC 61.634 63.158 0.00 0.00 44.79 3.18
340 341 2.282674 CCAGGGCAGCAAGCTTCA 60.283 61.111 0.00 0.00 44.79 3.02
341 342 1.871126 GAACCAGGGCAGCAAGCTTC 61.871 60.000 0.00 0.00 44.79 3.86
354 355 1.741706 CAGCAATGCTACCAGAACCAG 59.258 52.381 7.70 0.00 36.40 4.00
511 514 1.686428 CCTCCCTCACGATCTTCTCCA 60.686 57.143 0.00 0.00 0.00 3.86
621 630 9.841880 CGTAGCATGAATTATATACACTGTAGT 57.158 33.333 0.00 0.00 0.00 2.73
622 631 9.841880 ACGTAGCATGAATTATATACACTGTAG 57.158 33.333 0.00 0.00 0.00 2.74
623 632 9.836076 GACGTAGCATGAATTATATACACTGTA 57.164 33.333 0.00 0.00 0.00 2.74
624 633 7.813148 GGACGTAGCATGAATTATATACACTGT 59.187 37.037 0.00 0.00 0.00 3.55
625 634 7.812669 TGGACGTAGCATGAATTATATACACTG 59.187 37.037 0.00 0.00 0.00 3.66
666 684 9.544314 CGTAAATATCCACACGTTATTCAAAAA 57.456 29.630 0.00 0.00 0.00 1.94
667 685 7.693120 GCGTAAATATCCACACGTTATTCAAAA 59.307 33.333 0.00 0.00 36.78 2.44
668 686 7.181418 GCGTAAATATCCACACGTTATTCAAA 58.819 34.615 0.00 0.00 36.78 2.69
669 687 6.508246 CGCGTAAATATCCACACGTTATTCAA 60.508 38.462 0.00 0.00 36.78 2.69
670 688 5.051574 CGCGTAAATATCCACACGTTATTCA 60.052 40.000 0.00 0.00 36.78 2.57
671 689 5.051508 ACGCGTAAATATCCACACGTTATTC 60.052 40.000 11.67 0.00 36.78 1.75
672 690 4.805192 ACGCGTAAATATCCACACGTTATT 59.195 37.500 11.67 0.00 36.78 1.40
673 691 4.207635 CACGCGTAAATATCCACACGTTAT 59.792 41.667 13.44 0.00 31.63 1.89
674 692 3.547068 CACGCGTAAATATCCACACGTTA 59.453 43.478 13.44 0.00 31.63 3.18
675 693 2.346244 CACGCGTAAATATCCACACGTT 59.654 45.455 13.44 0.00 31.63 3.99
694 712 3.489738 GCCTCACAAACATATCCATGCAC 60.490 47.826 0.00 0.00 35.39 4.57
725 770 1.695114 GCAACCCTGGGCAAAAAGGT 61.695 55.000 14.08 0.00 0.00 3.50
760 808 1.137872 GTTGGCCATGGTGTTGTCAAA 59.862 47.619 14.67 0.00 0.00 2.69
873 921 2.675423 CACGAGACGACCCCCTCA 60.675 66.667 0.00 0.00 0.00 3.86
892 940 1.671054 CAAAGGCCACGATGTCGGT 60.671 57.895 5.01 0.00 44.95 4.69
918 966 0.323302 TTAGCAAGATGGTGGCGTCA 59.677 50.000 0.00 0.00 0.00 4.35
955 1006 2.483889 CCAATAGGAAGTCGAGGAAGCC 60.484 54.545 0.00 0.00 36.89 4.35
974 1025 5.328312 GAAGTTGGACTTCCTGTCACCCA 62.328 52.174 9.17 0.00 46.68 4.51
1072 1123 2.289072 CCTCAAGGACAGTGATGTTCGT 60.289 50.000 0.00 0.00 37.39 3.85
1074 1125 3.685139 TCCTCAAGGACAGTGATGTTC 57.315 47.619 0.00 0.00 39.78 3.18
1089 1140 3.455910 CCTTGACCCTGAACATATCCTCA 59.544 47.826 0.00 0.00 0.00 3.86
1221 1281 1.272092 TGCAGGGATGCAGCTAAAGTT 60.272 47.619 0.22 0.00 40.23 2.66
1262 1322 2.826702 GAACCACAGTGGGGTCGT 59.173 61.111 19.80 2.02 43.37 4.34
1288 1348 0.041238 TCCAGGTCATCGGGAGTCTT 59.959 55.000 0.00 0.00 34.79 3.01
1345 1405 0.874390 GCGGCATCTGACTTGAACAA 59.126 50.000 0.00 0.00 0.00 2.83
1380 1440 2.098607 GTCCACCAATCTCGATGTCGTA 59.901 50.000 2.04 0.00 40.80 3.43
1501 1562 2.869801 TGACAAACTGGTAGTGCTTTCG 59.130 45.455 0.00 0.00 0.00 3.46
1511 1572 4.215109 AGCTGGTTAATTGACAAACTGGT 58.785 39.130 2.50 0.00 0.00 4.00
1514 1575 4.024048 CGTGAGCTGGTTAATTGACAAACT 60.024 41.667 2.50 0.00 0.00 2.66
1589 1650 7.426410 CAGCTTATTCTGATTACTCTCGGTTA 58.574 38.462 0.00 0.00 36.19 2.85
1614 1675 1.600413 GCTAGCACACACAAAAGCACC 60.600 52.381 10.63 0.00 0.00 5.01
1643 1704 2.103432 TCGTAGGAAAAGAACAGCACCA 59.897 45.455 0.00 0.00 0.00 4.17
1759 1825 7.507616 TGCTGAAATTCCCCTTTTAGAAAACTA 59.492 33.333 0.00 0.00 0.00 2.24
1765 1831 4.998051 AGTGCTGAAATTCCCCTTTTAGA 58.002 39.130 0.00 0.00 0.00 2.10
1841 1907 5.425539 TCTTACTTTGGGACAGAGGGAATAG 59.574 44.000 0.00 0.00 45.63 1.73
1851 1917 5.105567 TCAACAACTCTTACTTTGGGACA 57.894 39.130 0.00 0.00 0.00 4.02
1929 1996 7.067008 GCTGATTAAGTATAACCTTCTTTGGCA 59.933 37.037 0.00 0.00 0.00 4.92
1930 1997 7.418408 GCTGATTAAGTATAACCTTCTTTGGC 58.582 38.462 0.00 0.00 0.00 4.52
1936 2003 6.979238 AGTGTCGCTGATTAAGTATAACCTTC 59.021 38.462 0.00 0.00 0.00 3.46
1939 2006 8.813643 ATAAGTGTCGCTGATTAAGTATAACC 57.186 34.615 0.00 0.00 0.00 2.85
1954 2021 5.147162 CCTCTGTTTCAAAATAAGTGTCGC 58.853 41.667 0.00 0.00 0.00 5.19
1970 2037 5.299782 CGAGCTAGTTATTACTCCCTCTGTT 59.700 44.000 0.00 0.00 35.78 3.16
1974 2041 5.771153 AACGAGCTAGTTATTACTCCCTC 57.229 43.478 10.78 0.00 35.78 4.30
2010 2077 2.422276 TGCATCGATCGTCATGGTAG 57.578 50.000 15.94 0.00 0.00 3.18
2011 2078 3.385193 AATGCATCGATCGTCATGGTA 57.615 42.857 15.94 1.60 0.00 3.25
2012 2079 2.245159 AATGCATCGATCGTCATGGT 57.755 45.000 15.94 1.35 0.00 3.55
2013 2080 2.912366 CAAATGCATCGATCGTCATGG 58.088 47.619 15.94 9.31 0.00 3.66
2054 2122 1.001815 GCCTTGCTAGTTTTGCGTGAA 60.002 47.619 0.00 0.00 0.00 3.18
2055 2123 0.591170 GCCTTGCTAGTTTTGCGTGA 59.409 50.000 0.00 0.00 0.00 4.35
2073 2141 6.959361 ACATAGGTGAAAATGTATCAATCGC 58.041 36.000 0.00 0.00 34.61 4.58
2189 2257 3.703052 CTCTTACCGGAGCCCTTTACTTA 59.297 47.826 9.46 0.00 0.00 2.24
2203 2271 3.130516 TGTGCCTCAGTTATCTCTTACCG 59.869 47.826 0.00 0.00 0.00 4.02
2206 2274 3.130516 CCGTGTGCCTCAGTTATCTCTTA 59.869 47.826 0.00 0.00 0.00 2.10
2217 2285 0.678684 TATCGTCTCCGTGTGCCTCA 60.679 55.000 0.00 0.00 35.01 3.86
2225 2293 2.486982 CGGGATACATTATCGTCTCCGT 59.513 50.000 0.00 0.00 33.92 4.69
2236 2304 3.606687 GGTGTGAACTTCGGGATACATT 58.393 45.455 0.00 0.00 39.74 2.71
2246 2314 1.967319 TCTGCAAGGGTGTGAACTTC 58.033 50.000 0.00 0.00 0.00 3.01
2257 2325 3.009723 ACGGTGATTAACATCTGCAAGG 58.990 45.455 0.00 0.00 0.00 3.61
2258 2326 4.685169 AACGGTGATTAACATCTGCAAG 57.315 40.909 0.00 0.00 0.00 4.01
2260 2328 3.190327 CCAAACGGTGATTAACATCTGCA 59.810 43.478 0.00 0.00 0.00 4.41
2263 2331 3.689649 GCTCCAAACGGTGATTAACATCT 59.310 43.478 0.00 0.00 0.00 2.90
2264 2332 3.485216 CGCTCCAAACGGTGATTAACATC 60.485 47.826 0.00 0.00 0.00 3.06
2268 2336 1.444836 CCGCTCCAAACGGTGATTAA 58.555 50.000 0.00 0.00 45.70 1.40
2285 2353 0.464373 AGCATTGTGCCTCCATACCG 60.464 55.000 0.00 0.00 46.52 4.02
2289 2357 1.076485 GGGAGCATTGTGCCTCCAT 60.076 57.895 16.56 0.00 46.52 3.41
2292 2360 0.899717 TTTGGGGAGCATTGTGCCTC 60.900 55.000 0.00 0.00 46.52 4.70
2303 2371 1.616994 CCCTAGTGCCTTTTTGGGGAG 60.617 57.143 0.00 0.00 34.71 4.30
2315 2384 3.604582 GAGATTATGATGGCCCTAGTGC 58.395 50.000 0.00 0.00 0.00 4.40
2321 2390 3.600388 CGTAAGGAGATTATGATGGCCC 58.400 50.000 0.00 0.00 32.89 5.80
2327 2396 2.557056 CGAGGGCGTAAGGAGATTATGA 59.443 50.000 0.00 0.00 32.89 2.15
2329 2398 1.272769 GCGAGGGCGTAAGGAGATTAT 59.727 52.381 0.00 0.00 40.36 1.28
2350 2419 2.838386 ATCACGACATCTTGCATTGC 57.162 45.000 0.46 0.46 0.00 3.56
2371 2440 0.912486 CCTCAAGGGTCCCTTAGTGG 59.088 60.000 23.37 20.42 42.67 4.00
2406 2475 2.099405 CCCAAGGGTTGCGATTTGTAT 58.901 47.619 0.00 0.00 0.00 2.29
2433 2502 1.877443 CCAAAGTGTAAGGGTTCGGTG 59.123 52.381 0.00 0.00 0.00 4.94
2443 2512 2.035632 CCAAGGGTTGCCAAAGTGTAA 58.964 47.619 0.00 0.00 0.00 2.41
2462 2531 1.699054 GGGTATCGGTAACCACCCCC 61.699 65.000 4.43 0.00 42.43 5.40
2471 2540 6.160684 CGAATGATTTGTATGGGTATCGGTA 58.839 40.000 0.00 0.00 0.00 4.02
2476 2545 4.662278 CCCCGAATGATTTGTATGGGTAT 58.338 43.478 0.00 0.00 33.17 2.73
2477 2546 3.749310 GCCCCGAATGATTTGTATGGGTA 60.749 47.826 6.97 0.00 34.18 3.69
2482 2551 4.473444 AGATTGCCCCGAATGATTTGTAT 58.527 39.130 0.00 0.00 0.00 2.29
2491 2560 1.818674 GTTGTGAAGATTGCCCCGAAT 59.181 47.619 0.00 0.00 0.00 3.34
2492 2561 1.202879 AGTTGTGAAGATTGCCCCGAA 60.203 47.619 0.00 0.00 0.00 4.30
2499 2568 8.669243 GGGTCTCTAATTAAGTTGTGAAGATTG 58.331 37.037 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.