Multiple sequence alignment - TraesCS6D01G299600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G299600 chr6D 100.000 5879 0 0 1 5879 409863522 409869400 0.000000e+00 10857.0
1 TraesCS6D01G299600 chr6D 90.813 2090 125 16 3056 5085 410073505 410071423 0.000000e+00 2734.0
2 TraesCS6D01G299600 chr6D 89.097 1174 82 25 1642 2797 410074649 410073504 0.000000e+00 1417.0
3 TraesCS6D01G299600 chr6D 89.565 345 27 5 1 344 407179302 407179638 4.210000e-116 429.0
4 TraesCS6D01G299600 chr6D 95.789 95 4 0 342 436 409861712 409861618 2.840000e-33 154.0
5 TraesCS6D01G299600 chr6D 93.878 49 2 1 5212 5259 63757596 63757548 8.170000e-09 73.1
6 TraesCS6D01G299600 chr6B 96.370 2121 55 8 2951 5064 616324743 616326848 0.000000e+00 3470.0
7 TraesCS6D01G299600 chr6B 90.799 1891 121 21 3157 5002 616434282 616432400 0.000000e+00 2479.0
8 TraesCS6D01G299600 chr6B 91.815 672 42 8 5219 5879 616327178 616327847 0.000000e+00 924.0
9 TraesCS6D01G299600 chr6B 88.275 742 37 25 608 1323 616323233 616323950 0.000000e+00 843.0
10 TraesCS6D01G299600 chr6B 88.328 574 37 14 2258 2803 616435796 616435225 0.000000e+00 662.0
11 TraesCS6D01G299600 chr6B 94.536 366 16 1 2041 2402 616323979 616324344 3.980000e-156 562.0
12 TraesCS6D01G299600 chr6B 92.063 378 21 5 2436 2804 616324346 616324723 1.880000e-144 523.0
13 TraesCS6D01G299600 chr6B 91.209 182 14 2 435 614 616322870 616323051 4.550000e-61 246.0
14 TraesCS6D01G299600 chr6B 96.875 128 4 0 1687 1814 616435922 616435795 1.280000e-51 215.0
15 TraesCS6D01G299600 chr6B 91.743 109 5 2 3057 3163 616435229 616435123 1.320000e-31 148.0
16 TraesCS6D01G299600 chr6A 96.363 1787 56 5 3303 5085 555317716 555319497 0.000000e+00 2931.0
17 TraesCS6D01G299600 chr6A 91.547 2082 131 17 3043 5085 555363748 555361673 0.000000e+00 2828.0
18 TraesCS6D01G299600 chr6A 94.832 832 34 5 1567 2389 555316778 555317609 0.000000e+00 1290.0
19 TraesCS6D01G299600 chr6A 89.899 990 31 24 510 1469 555313707 555314657 0.000000e+00 1210.0
20 TraesCS6D01G299600 chr6A 89.694 980 47 23 1610 2584 555367349 555366419 0.000000e+00 1201.0
21 TraesCS6D01G299600 chr6A 90.969 764 43 12 5140 5879 555319502 555320263 0.000000e+00 1005.0
22 TraesCS6D01G299600 chr6A 87.935 489 23 6 2534 3008 555366431 555365965 1.440000e-150 544.0
23 TraesCS6D01G299600 chr6A 94.595 111 6 0 3162 3272 555317608 555317718 7.830000e-39 172.0
24 TraesCS6D01G299600 chr6A 97.101 69 2 0 1498 1566 555314637 555314705 3.720000e-22 117.0
25 TraesCS6D01G299600 chr6A 93.878 49 2 1 5212 5259 81096778 81096730 8.170000e-09 73.1
26 TraesCS6D01G299600 chr7B 88.906 640 46 18 5256 5879 705330968 705331598 0.000000e+00 765.0
27 TraesCS6D01G299600 chr2B 87.634 655 45 24 5249 5879 728927519 728928161 0.000000e+00 728.0
28 TraesCS6D01G299600 chr4B 87.692 650 47 22 5255 5879 671651743 671651102 0.000000e+00 726.0
29 TraesCS6D01G299600 chr4B 86.420 648 49 23 5256 5879 567411007 567410375 0.000000e+00 673.0
30 TraesCS6D01G299600 chr5D 86.813 637 56 23 5260 5879 476756337 476755712 0.000000e+00 686.0
31 TraesCS6D01G299600 chr5D 83.951 324 23 3 122 423 428664949 428664633 3.470000e-72 283.0
32 TraesCS6D01G299600 chr5D 92.308 78 6 0 342 419 428667336 428667413 1.730000e-20 111.0
33 TraesCS6D01G299600 chr2D 86.677 638 61 14 5257 5879 642368182 642368810 0.000000e+00 686.0
34 TraesCS6D01G299600 chr3B 86.120 634 68 14 5256 5879 757522481 757521858 0.000000e+00 665.0
35 TraesCS6D01G299600 chr3B 85.926 135 17 2 1719 1851 9917840 9917706 6.140000e-30 143.0
36 TraesCS6D01G299600 chr3B 89.655 87 9 0 342 428 22883161 22883247 1.730000e-20 111.0
37 TraesCS6D01G299600 chr7D 92.197 346 26 1 1 345 572439309 572438964 6.850000e-134 488.0
38 TraesCS6D01G299600 chr7D 91.908 346 27 1 1 345 572414488 572414833 3.190000e-132 483.0
39 TraesCS6D01G299600 chr7D 89.213 343 30 4 1 343 17217905 17218240 7.040000e-114 422.0
40 TraesCS6D01G299600 chr3D 91.884 345 26 1 1 345 50401836 50401494 1.150000e-131 481.0
41 TraesCS6D01G299600 chr3D 89.049 347 32 4 1 343 379243741 379244085 5.450000e-115 425.0
42 TraesCS6D01G299600 chr3D 79.878 328 22 9 118 423 305871703 305872008 3.590000e-47 200.0
43 TraesCS6D01G299600 chr3D 93.506 77 5 0 342 418 50418305 50418381 1.340000e-21 115.0
44 TraesCS6D01G299600 chr3D 92.500 80 6 0 344 423 545351607 545351686 1.340000e-21 115.0
45 TraesCS6D01G299600 chr4D 91.837 343 27 1 4 345 13212362 13212020 1.480000e-130 477.0
46 TraesCS6D01G299600 chr4D 88.728 346 33 6 1 342 25585824 25585481 9.110000e-113 418.0
47 TraesCS6D01G299600 chr4D 92.683 82 5 1 342 423 13214150 13214230 3.720000e-22 117.0
48 TraesCS6D01G299600 chr1D 89.368 348 29 8 1 343 379578713 379579057 1.170000e-116 431.0
49 TraesCS6D01G299600 chr1D 75.836 269 34 16 180 423 379575144 379574882 2.240000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G299600 chr6D 409863522 409869400 5878 False 10857.000000 10857 100.000000 1 5879 1 chr6D.!!$F2 5878
1 TraesCS6D01G299600 chr6D 410071423 410074649 3226 True 2075.500000 2734 89.955000 1642 5085 2 chr6D.!!$R3 3443
2 TraesCS6D01G299600 chr6B 616322870 616327847 4977 False 1094.666667 3470 92.378000 435 5879 6 chr6B.!!$F1 5444
3 TraesCS6D01G299600 chr6B 616432400 616435922 3522 True 876.000000 2479 91.936250 1687 5002 4 chr6B.!!$R1 3315
4 TraesCS6D01G299600 chr6A 555361673 555367349 5676 True 1524.333333 2828 89.725333 1610 5085 3 chr6A.!!$R2 3475
5 TraesCS6D01G299600 chr6A 555313707 555320263 6556 False 1120.833333 2931 93.959833 510 5879 6 chr6A.!!$F1 5369
6 TraesCS6D01G299600 chr7B 705330968 705331598 630 False 765.000000 765 88.906000 5256 5879 1 chr7B.!!$F1 623
7 TraesCS6D01G299600 chr2B 728927519 728928161 642 False 728.000000 728 87.634000 5249 5879 1 chr2B.!!$F1 630
8 TraesCS6D01G299600 chr4B 671651102 671651743 641 True 726.000000 726 87.692000 5255 5879 1 chr4B.!!$R2 624
9 TraesCS6D01G299600 chr4B 567410375 567411007 632 True 673.000000 673 86.420000 5256 5879 1 chr4B.!!$R1 623
10 TraesCS6D01G299600 chr5D 476755712 476756337 625 True 686.000000 686 86.813000 5260 5879 1 chr5D.!!$R2 619
11 TraesCS6D01G299600 chr2D 642368182 642368810 628 False 686.000000 686 86.677000 5257 5879 1 chr2D.!!$F1 622
12 TraesCS6D01G299600 chr3B 757521858 757522481 623 True 665.000000 665 86.120000 5256 5879 1 chr3B.!!$R2 623

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
215 216 0.040058 TCTGGCGGTAGGGTTAGACA 59.960 55.000 0.00 0.00 0.00 3.41 F
1126 1353 0.035630 GGTGTGCTTCCTGCTGATCT 60.036 55.000 0.00 0.00 43.37 2.75 F
1374 1618 0.179100 CTCCTACATGTCGGCACCAG 60.179 60.000 11.53 0.32 0.00 4.00 F
1399 1643 1.136446 GCGCAATCAAGCAAGCAAAAG 60.136 47.619 0.30 0.00 0.00 2.27 F
2826 5260 0.547471 TTCCCCACTGCATGAGGAGA 60.547 55.000 0.00 0.00 36.58 3.71 F
3665 9153 0.251354 ACTCAGAGCATCAACGGCAT 59.749 50.000 0.00 0.00 37.82 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1511 1755 0.110486 TTGGAGCCTTGGGAGTTCAC 59.890 55.000 0.00 0.00 0.00 3.18 R
2137 4471 1.355066 CTCCTTGAGAAAGCGGCGTC 61.355 60.000 9.37 0.13 0.00 5.19 R
2804 5228 1.993653 CTCATGCAGTGGGGAAGGA 59.006 57.895 0.00 0.00 0.00 3.36 R
2891 5325 2.042433 AGTACAAATGGGCTGCCCTTTA 59.958 45.455 35.80 18.79 45.70 1.85 R
3971 9459 0.815734 ACCGTCAAGATGGAGGTACG 59.184 55.000 14.98 0.00 39.90 3.67 R
5137 10686 0.036590 GTGCAAAACAATGCCCCCAT 59.963 50.000 0.00 0.00 45.83 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.108976 GGCCATCTCGATCCGCAA 59.891 61.111 0.00 0.00 0.00 4.85
18 19 1.523711 GGCCATCTCGATCCGCAAA 60.524 57.895 0.00 0.00 0.00 3.68
19 20 1.095228 GGCCATCTCGATCCGCAAAA 61.095 55.000 0.00 0.00 0.00 2.44
20 21 0.732571 GCCATCTCGATCCGCAAAAA 59.267 50.000 0.00 0.00 0.00 1.94
21 22 1.531883 GCCATCTCGATCCGCAAAAAC 60.532 52.381 0.00 0.00 0.00 2.43
22 23 1.267532 CCATCTCGATCCGCAAAAACG 60.268 52.381 0.00 0.00 0.00 3.60
33 34 1.511147 CGCAAAAACGGTGAAGAAACG 59.489 47.619 0.00 0.00 0.00 3.60
34 35 1.849829 GCAAAAACGGTGAAGAAACGG 59.150 47.619 0.00 0.00 0.00 4.44
35 36 2.732912 GCAAAAACGGTGAAGAAACGGT 60.733 45.455 0.00 0.00 35.36 4.83
36 37 2.836479 AAAACGGTGAAGAAACGGTG 57.164 45.000 0.00 0.00 34.26 4.94
37 38 2.027003 AAACGGTGAAGAAACGGTGA 57.973 45.000 0.00 0.00 34.26 4.02
38 39 2.027003 AACGGTGAAGAAACGGTGAA 57.973 45.000 0.00 0.00 34.26 3.18
39 40 1.578583 ACGGTGAAGAAACGGTGAAG 58.421 50.000 0.00 0.00 32.93 3.02
40 41 1.137479 ACGGTGAAGAAACGGTGAAGA 59.863 47.619 0.00 0.00 32.93 2.87
41 42 2.224209 ACGGTGAAGAAACGGTGAAGAT 60.224 45.455 0.00 0.00 32.93 2.40
42 43 2.412089 CGGTGAAGAAACGGTGAAGATC 59.588 50.000 0.00 0.00 0.00 2.75
43 44 2.742589 GGTGAAGAAACGGTGAAGATCC 59.257 50.000 0.00 0.00 0.00 3.36
50 51 3.231298 GGTGAAGATCCGAGGGGG 58.769 66.667 0.00 0.00 37.02 5.40
64 65 3.237741 GGGGGAGCGGAGGAGATG 61.238 72.222 0.00 0.00 0.00 2.90
65 66 2.123251 GGGGAGCGGAGGAGATGA 60.123 66.667 0.00 0.00 0.00 2.92
66 67 2.206536 GGGGAGCGGAGGAGATGAG 61.207 68.421 0.00 0.00 0.00 2.90
67 68 1.152652 GGGAGCGGAGGAGATGAGA 60.153 63.158 0.00 0.00 0.00 3.27
68 69 1.178534 GGGAGCGGAGGAGATGAGAG 61.179 65.000 0.00 0.00 0.00 3.20
69 70 0.179004 GGAGCGGAGGAGATGAGAGA 60.179 60.000 0.00 0.00 0.00 3.10
70 71 1.238439 GAGCGGAGGAGATGAGAGAG 58.762 60.000 0.00 0.00 0.00 3.20
71 72 0.178992 AGCGGAGGAGATGAGAGAGG 60.179 60.000 0.00 0.00 0.00 3.69
72 73 1.178534 GCGGAGGAGATGAGAGAGGG 61.179 65.000 0.00 0.00 0.00 4.30
73 74 0.476338 CGGAGGAGATGAGAGAGGGA 59.524 60.000 0.00 0.00 0.00 4.20
74 75 1.545428 CGGAGGAGATGAGAGAGGGAG 60.545 61.905 0.00 0.00 0.00 4.30
75 76 1.780309 GGAGGAGATGAGAGAGGGAGA 59.220 57.143 0.00 0.00 0.00 3.71
76 77 2.224867 GGAGGAGATGAGAGAGGGAGAG 60.225 59.091 0.00 0.00 0.00 3.20
77 78 2.711009 GAGGAGATGAGAGAGGGAGAGA 59.289 54.545 0.00 0.00 0.00 3.10
78 79 2.713167 AGGAGATGAGAGAGGGAGAGAG 59.287 54.545 0.00 0.00 0.00 3.20
79 80 2.224867 GGAGATGAGAGAGGGAGAGAGG 60.225 59.091 0.00 0.00 0.00 3.69
80 81 1.782752 AGATGAGAGAGGGAGAGAGGG 59.217 57.143 0.00 0.00 0.00 4.30
81 82 0.859760 ATGAGAGAGGGAGAGAGGGG 59.140 60.000 0.00 0.00 0.00 4.79
82 83 1.152546 GAGAGAGGGAGAGAGGGGC 60.153 68.421 0.00 0.00 0.00 5.80
83 84 2.520741 GAGAGGGAGAGAGGGGCG 60.521 72.222 0.00 0.00 0.00 6.13
84 85 3.024356 AGAGGGAGAGAGGGGCGA 61.024 66.667 0.00 0.00 0.00 5.54
85 86 2.520741 GAGGGAGAGAGGGGCGAG 60.521 72.222 0.00 0.00 0.00 5.03
86 87 3.351885 AGGGAGAGAGGGGCGAGT 61.352 66.667 0.00 0.00 0.00 4.18
87 88 2.364448 GGGAGAGAGGGGCGAGTT 60.364 66.667 0.00 0.00 0.00 3.01
88 89 2.726351 GGGAGAGAGGGGCGAGTTG 61.726 68.421 0.00 0.00 0.00 3.16
89 90 2.726351 GGAGAGAGGGGCGAGTTGG 61.726 68.421 0.00 0.00 0.00 3.77
90 91 2.685380 AGAGAGGGGCGAGTTGGG 60.685 66.667 0.00 0.00 0.00 4.12
91 92 3.787001 GAGAGGGGCGAGTTGGGG 61.787 72.222 0.00 0.00 0.00 4.96
92 93 4.332543 AGAGGGGCGAGTTGGGGA 62.333 66.667 0.00 0.00 0.00 4.81
93 94 3.327404 GAGGGGCGAGTTGGGGAA 61.327 66.667 0.00 0.00 0.00 3.97
94 95 3.330720 AGGGGCGAGTTGGGGAAG 61.331 66.667 0.00 0.00 0.00 3.46
95 96 3.327404 GGGGCGAGTTGGGGAAGA 61.327 66.667 0.00 0.00 0.00 2.87
96 97 2.754375 GGGCGAGTTGGGGAAGAA 59.246 61.111 0.00 0.00 0.00 2.52
97 98 1.074248 GGGCGAGTTGGGGAAGAAA 59.926 57.895 0.00 0.00 0.00 2.52
98 99 0.538746 GGGCGAGTTGGGGAAGAAAA 60.539 55.000 0.00 0.00 0.00 2.29
99 100 0.881796 GGCGAGTTGGGGAAGAAAAG 59.118 55.000 0.00 0.00 0.00 2.27
100 101 1.544759 GGCGAGTTGGGGAAGAAAAGA 60.545 52.381 0.00 0.00 0.00 2.52
101 102 2.437413 GCGAGTTGGGGAAGAAAAGAT 58.563 47.619 0.00 0.00 0.00 2.40
102 103 2.162408 GCGAGTTGGGGAAGAAAAGATG 59.838 50.000 0.00 0.00 0.00 2.90
103 104 3.674997 CGAGTTGGGGAAGAAAAGATGA 58.325 45.455 0.00 0.00 0.00 2.92
104 105 4.072131 CGAGTTGGGGAAGAAAAGATGAA 58.928 43.478 0.00 0.00 0.00 2.57
105 106 4.518970 CGAGTTGGGGAAGAAAAGATGAAA 59.481 41.667 0.00 0.00 0.00 2.69
106 107 5.562890 CGAGTTGGGGAAGAAAAGATGAAAC 60.563 44.000 0.00 0.00 0.00 2.78
107 108 5.458595 AGTTGGGGAAGAAAAGATGAAACT 58.541 37.500 0.00 0.00 0.00 2.66
108 109 5.302823 AGTTGGGGAAGAAAAGATGAAACTG 59.697 40.000 0.00 0.00 0.00 3.16
109 110 3.573967 TGGGGAAGAAAAGATGAAACTGC 59.426 43.478 0.00 0.00 0.00 4.40
110 111 3.056536 GGGGAAGAAAAGATGAAACTGCC 60.057 47.826 0.00 0.00 0.00 4.85
111 112 3.366374 GGGAAGAAAAGATGAAACTGCCG 60.366 47.826 0.00 0.00 0.00 5.69
112 113 3.502211 GGAAGAAAAGATGAAACTGCCGA 59.498 43.478 0.00 0.00 0.00 5.54
113 114 4.467735 GAAGAAAAGATGAAACTGCCGAC 58.532 43.478 0.00 0.00 0.00 4.79
114 115 2.480419 AGAAAAGATGAAACTGCCGACG 59.520 45.455 0.00 0.00 0.00 5.12
115 116 1.156736 AAAGATGAAACTGCCGACGG 58.843 50.000 10.29 10.29 0.00 4.79
116 117 0.320374 AAGATGAAACTGCCGACGGA 59.680 50.000 20.50 1.60 0.00 4.69
117 118 0.108615 AGATGAAACTGCCGACGGAG 60.109 55.000 20.50 14.43 0.00 4.63
118 119 1.079127 ATGAAACTGCCGACGGAGG 60.079 57.895 20.50 11.53 0.00 4.30
119 120 2.434359 GAAACTGCCGACGGAGGG 60.434 66.667 20.50 8.83 0.00 4.30
120 121 2.920912 AAACTGCCGACGGAGGGA 60.921 61.111 20.50 0.00 0.00 4.20
128 129 4.862823 GACGGAGGGAGGGGGAGG 62.863 77.778 0.00 0.00 0.00 4.30
132 133 4.825679 GAGGGAGGGGGAGGGGTG 62.826 77.778 0.00 0.00 0.00 4.61
135 136 4.825679 GGAGGGGGAGGGGTGGAG 62.826 77.778 0.00 0.00 0.00 3.86
136 137 3.695825 GAGGGGGAGGGGTGGAGA 61.696 72.222 0.00 0.00 0.00 3.71
137 138 3.700350 AGGGGGAGGGGTGGAGAG 61.700 72.222 0.00 0.00 0.00 3.20
138 139 3.695825 GGGGGAGGGGTGGAGAGA 61.696 72.222 0.00 0.00 0.00 3.10
139 140 2.706071 GGGGAGGGGTGGAGAGAT 59.294 66.667 0.00 0.00 0.00 2.75
140 141 1.768077 GGGGAGGGGTGGAGAGATG 60.768 68.421 0.00 0.00 0.00 2.90
141 142 1.768077 GGGAGGGGTGGAGAGATGG 60.768 68.421 0.00 0.00 0.00 3.51
142 143 1.768077 GGAGGGGTGGAGAGATGGG 60.768 68.421 0.00 0.00 0.00 4.00
143 144 2.367512 AGGGGTGGAGAGATGGGC 60.368 66.667 0.00 0.00 0.00 5.36
144 145 2.692368 GGGGTGGAGAGATGGGCA 60.692 66.667 0.00 0.00 0.00 5.36
145 146 2.750657 GGGGTGGAGAGATGGGCAG 61.751 68.421 0.00 0.00 0.00 4.85
146 147 2.750657 GGGTGGAGAGATGGGCAGG 61.751 68.421 0.00 0.00 0.00 4.85
147 148 2.750657 GGTGGAGAGATGGGCAGGG 61.751 68.421 0.00 0.00 0.00 4.45
148 149 2.367377 TGGAGAGATGGGCAGGGG 60.367 66.667 0.00 0.00 0.00 4.79
149 150 3.883549 GGAGAGATGGGCAGGGGC 61.884 72.222 0.00 0.00 40.13 5.80
150 151 4.247380 GAGAGATGGGCAGGGGCG 62.247 72.222 0.00 0.00 42.47 6.13
174 175 0.179137 GCCCAAGGCGAAATAACTGC 60.179 55.000 0.00 0.00 39.62 4.40
178 179 3.107447 GGCGAAATAACTGCCCGG 58.893 61.111 0.00 0.00 43.06 5.73
179 180 1.450669 GGCGAAATAACTGCCCGGA 60.451 57.895 0.73 0.00 43.06 5.14
180 181 1.712018 GGCGAAATAACTGCCCGGAC 61.712 60.000 0.73 0.00 43.06 4.79
181 182 1.712018 GCGAAATAACTGCCCGGACC 61.712 60.000 0.73 0.00 0.00 4.46
182 183 1.093496 CGAAATAACTGCCCGGACCC 61.093 60.000 0.73 0.00 0.00 4.46
183 184 0.255033 GAAATAACTGCCCGGACCCT 59.745 55.000 0.73 0.00 0.00 4.34
184 185 1.487558 GAAATAACTGCCCGGACCCTA 59.512 52.381 0.73 0.00 0.00 3.53
185 186 0.835276 AATAACTGCCCGGACCCTAC 59.165 55.000 0.73 0.00 0.00 3.18
186 187 1.052694 ATAACTGCCCGGACCCTACC 61.053 60.000 0.73 0.00 0.00 3.18
206 207 3.854669 CAGGGGCTCTGGCGGTAG 61.855 72.222 6.45 0.00 39.76 3.18
210 211 3.400054 GGCTCTGGCGGTAGGGTT 61.400 66.667 0.00 0.00 39.81 4.11
211 212 2.062177 GGCTCTGGCGGTAGGGTTA 61.062 63.158 0.00 0.00 39.81 2.85
212 213 1.442148 GCTCTGGCGGTAGGGTTAG 59.558 63.158 0.00 0.00 0.00 2.34
213 214 1.041447 GCTCTGGCGGTAGGGTTAGA 61.041 60.000 0.00 0.00 0.00 2.10
214 215 0.745468 CTCTGGCGGTAGGGTTAGAC 59.255 60.000 0.00 0.00 0.00 2.59
215 216 0.040058 TCTGGCGGTAGGGTTAGACA 59.960 55.000 0.00 0.00 0.00 3.41
216 217 0.460311 CTGGCGGTAGGGTTAGACAG 59.540 60.000 0.00 0.00 0.00 3.51
217 218 0.974010 TGGCGGTAGGGTTAGACAGG 60.974 60.000 0.00 0.00 0.00 4.00
218 219 1.143401 GCGGTAGGGTTAGACAGGC 59.857 63.158 0.00 0.00 0.00 4.85
219 220 1.328430 GCGGTAGGGTTAGACAGGCT 61.328 60.000 0.00 0.00 0.00 4.58
220 221 2.025863 GCGGTAGGGTTAGACAGGCTA 61.026 57.143 0.00 0.00 0.00 3.93
221 222 1.680207 CGGTAGGGTTAGACAGGCTAC 59.320 57.143 0.00 0.00 0.00 3.58
222 223 2.037901 GGTAGGGTTAGACAGGCTACC 58.962 57.143 0.00 0.00 0.00 3.18
223 224 1.680207 GTAGGGTTAGACAGGCTACCG 59.320 57.143 0.00 0.00 0.00 4.02
224 225 1.143401 GGGTTAGACAGGCTACCGC 59.857 63.158 0.00 0.00 0.00 5.68
241 242 2.056223 GCCAGGTGACCTAGCGGTA 61.056 63.158 6.24 0.00 45.73 4.02
242 243 2.017559 GCCAGGTGACCTAGCGGTAG 62.018 65.000 14.73 14.73 45.73 3.18
249 250 2.831742 CCTAGCGGTAGGGTGCGA 60.832 66.667 29.29 0.00 42.25 5.10
250 251 2.201022 CCTAGCGGTAGGGTGCGAT 61.201 63.158 29.29 0.00 42.25 4.58
251 252 1.007271 CTAGCGGTAGGGTGCGATG 60.007 63.158 13.90 0.00 35.87 3.84
252 253 2.421877 CTAGCGGTAGGGTGCGATGG 62.422 65.000 13.90 0.00 35.87 3.51
253 254 2.914756 TAGCGGTAGGGTGCGATGGA 62.915 60.000 0.00 0.00 35.87 3.41
254 255 2.417516 CGGTAGGGTGCGATGGAG 59.582 66.667 0.00 0.00 0.00 3.86
255 256 2.125326 CGGTAGGGTGCGATGGAGA 61.125 63.158 0.00 0.00 0.00 3.71
256 257 1.742768 GGTAGGGTGCGATGGAGAG 59.257 63.158 0.00 0.00 0.00 3.20
257 258 1.742768 GTAGGGTGCGATGGAGAGG 59.257 63.158 0.00 0.00 0.00 3.69
258 259 1.457643 TAGGGTGCGATGGAGAGGG 60.458 63.158 0.00 0.00 0.00 4.30
259 260 1.944896 TAGGGTGCGATGGAGAGGGA 61.945 60.000 0.00 0.00 0.00 4.20
260 261 2.501610 GGTGCGATGGAGAGGGAC 59.498 66.667 0.00 0.00 0.00 4.46
261 262 2.105128 GTGCGATGGAGAGGGACG 59.895 66.667 0.00 0.00 0.00 4.79
262 263 3.147595 TGCGATGGAGAGGGACGG 61.148 66.667 0.00 0.00 0.00 4.79
263 264 4.593864 GCGATGGAGAGGGACGGC 62.594 72.222 0.00 0.00 0.00 5.68
264 265 4.271816 CGATGGAGAGGGACGGCG 62.272 72.222 4.80 4.80 0.00 6.46
265 266 3.917760 GATGGAGAGGGACGGCGG 61.918 72.222 13.24 0.00 0.00 6.13
266 267 4.458829 ATGGAGAGGGACGGCGGA 62.459 66.667 13.24 0.00 0.00 5.54
293 294 3.418675 CGTGCTGACGTGGATTACT 57.581 52.632 0.00 0.00 40.91 2.24
294 295 2.554806 CGTGCTGACGTGGATTACTA 57.445 50.000 0.00 0.00 40.91 1.82
295 296 2.182825 CGTGCTGACGTGGATTACTAC 58.817 52.381 0.00 0.00 40.91 2.73
296 297 2.537401 GTGCTGACGTGGATTACTACC 58.463 52.381 0.00 0.00 0.00 3.18
297 298 1.479323 TGCTGACGTGGATTACTACCC 59.521 52.381 0.00 0.00 0.00 3.69
298 299 1.755380 GCTGACGTGGATTACTACCCT 59.245 52.381 0.00 0.00 0.00 4.34
299 300 2.954318 GCTGACGTGGATTACTACCCTA 59.046 50.000 0.00 0.00 0.00 3.53
300 301 3.243334 GCTGACGTGGATTACTACCCTAC 60.243 52.174 0.00 0.00 0.00 3.18
301 302 3.290710 TGACGTGGATTACTACCCTACC 58.709 50.000 0.00 0.00 0.00 3.18
302 303 2.291741 GACGTGGATTACTACCCTACCG 59.708 54.545 0.00 0.00 0.00 4.02
303 304 2.092429 ACGTGGATTACTACCCTACCGA 60.092 50.000 0.00 0.00 0.00 4.69
304 305 2.291741 CGTGGATTACTACCCTACCGAC 59.708 54.545 0.00 0.00 0.00 4.79
305 306 3.290710 GTGGATTACTACCCTACCGACA 58.709 50.000 0.00 0.00 0.00 4.35
306 307 3.317430 GTGGATTACTACCCTACCGACAG 59.683 52.174 0.00 0.00 0.00 3.51
307 308 2.889678 GGATTACTACCCTACCGACAGG 59.110 54.545 0.00 0.00 45.13 4.00
333 334 3.061093 GCGGTAGCCTGTCTAAACC 57.939 57.895 0.00 0.00 37.42 3.27
334 335 0.535797 GCGGTAGCCTGTCTAAACCT 59.464 55.000 0.00 0.00 37.42 3.50
335 336 1.753073 GCGGTAGCCTGTCTAAACCTA 59.247 52.381 0.00 0.00 37.42 3.08
336 337 2.480932 GCGGTAGCCTGTCTAAACCTAC 60.481 54.545 0.00 0.00 37.42 3.18
337 338 2.100418 CGGTAGCCTGTCTAAACCTACC 59.900 54.545 0.00 0.00 42.80 3.18
338 339 2.100418 GGTAGCCTGTCTAAACCTACCG 59.900 54.545 0.00 0.00 38.82 4.02
339 340 0.535797 AGCCTGTCTAAACCTACCGC 59.464 55.000 0.00 0.00 0.00 5.68
340 341 0.461516 GCCTGTCTAAACCTACCGCC 60.462 60.000 0.00 0.00 0.00 6.13
341 342 0.899720 CCTGTCTAAACCTACCGCCA 59.100 55.000 0.00 0.00 0.00 5.69
342 343 1.134788 CCTGTCTAAACCTACCGCCAG 60.135 57.143 0.00 0.00 0.00 4.85
343 344 0.899720 TGTCTAAACCTACCGCCAGG 59.100 55.000 0.00 0.00 45.13 4.45
344 345 0.177373 GTCTAAACCTACCGCCAGGG 59.823 60.000 5.62 0.00 43.47 4.45
364 365 4.250464 GGGTCAAATCCCGAAAAATTTCC 58.750 43.478 0.00 0.00 37.93 3.13
365 366 4.262678 GGGTCAAATCCCGAAAAATTTCCA 60.263 41.667 0.00 0.00 37.93 3.53
366 367 5.301555 GGTCAAATCCCGAAAAATTTCCAA 58.698 37.500 0.00 0.00 33.68 3.53
367 368 5.760743 GGTCAAATCCCGAAAAATTTCCAAA 59.239 36.000 0.00 0.00 33.68 3.28
368 369 6.293190 GGTCAAATCCCGAAAAATTTCCAAAC 60.293 38.462 0.00 0.00 33.68 2.93
369 370 6.481976 GTCAAATCCCGAAAAATTTCCAAACT 59.518 34.615 0.00 0.00 33.68 2.66
370 371 6.481644 TCAAATCCCGAAAAATTTCCAAACTG 59.518 34.615 0.00 0.00 33.68 3.16
371 372 4.329462 TCCCGAAAAATTTCCAAACTGG 57.671 40.909 0.00 0.00 39.43 4.00
372 373 3.070302 TCCCGAAAAATTTCCAAACTGGG 59.930 43.478 7.55 7.55 38.32 4.45
373 374 3.398406 CCGAAAAATTTCCAAACTGGGG 58.602 45.455 0.00 0.00 38.32 4.96
374 375 3.181459 CCGAAAAATTTCCAAACTGGGGT 60.181 43.478 0.00 0.00 38.32 4.95
375 376 4.055360 CGAAAAATTTCCAAACTGGGGTC 58.945 43.478 0.00 0.00 38.32 4.46
376 377 4.442192 CGAAAAATTTCCAAACTGGGGTCA 60.442 41.667 0.00 0.00 38.32 4.02
377 378 4.687901 AAAATTTCCAAACTGGGGTCAG 57.312 40.909 0.00 0.00 46.10 3.51
378 379 3.611025 AATTTCCAAACTGGGGTCAGA 57.389 42.857 0.00 0.00 43.49 3.27
379 380 3.833559 ATTTCCAAACTGGGGTCAGAT 57.166 42.857 0.00 0.00 43.49 2.90
380 381 2.879103 TTCCAAACTGGGGTCAGATC 57.121 50.000 0.00 0.00 43.49 2.75
381 382 0.991920 TCCAAACTGGGGTCAGATCC 59.008 55.000 0.00 0.00 43.49 3.36
382 383 0.995024 CCAAACTGGGGTCAGATCCT 59.005 55.000 0.00 0.00 43.49 3.24
383 384 1.340405 CCAAACTGGGGTCAGATCCTG 60.340 57.143 0.00 0.00 43.49 3.86
384 385 1.630369 CAAACTGGGGTCAGATCCTGA 59.370 52.381 0.00 0.00 43.49 3.86
385 386 2.040278 CAAACTGGGGTCAGATCCTGAA 59.960 50.000 0.00 0.00 42.46 3.02
386 387 2.277008 ACTGGGGTCAGATCCTGAAT 57.723 50.000 0.00 0.00 42.46 2.57
387 388 2.566746 ACTGGGGTCAGATCCTGAATT 58.433 47.619 0.00 0.00 42.46 2.17
388 389 2.922283 ACTGGGGTCAGATCCTGAATTT 59.078 45.455 0.00 0.00 42.46 1.82
389 390 3.285484 CTGGGGTCAGATCCTGAATTTG 58.715 50.000 0.00 0.00 42.46 2.32
390 391 2.649312 TGGGGTCAGATCCTGAATTTGT 59.351 45.455 0.00 0.00 42.46 2.83
391 392 3.849574 TGGGGTCAGATCCTGAATTTGTA 59.150 43.478 0.00 0.00 42.46 2.41
392 393 4.478317 TGGGGTCAGATCCTGAATTTGTAT 59.522 41.667 0.00 0.00 42.46 2.29
393 394 5.066593 GGGGTCAGATCCTGAATTTGTATC 58.933 45.833 0.00 0.00 42.46 2.24
394 395 4.752101 GGGTCAGATCCTGAATTTGTATCG 59.248 45.833 0.00 0.00 42.46 2.92
395 396 4.212214 GGTCAGATCCTGAATTTGTATCGC 59.788 45.833 0.00 0.00 42.46 4.58
396 397 4.811024 GTCAGATCCTGAATTTGTATCGCA 59.189 41.667 0.00 0.00 42.46 5.10
397 398 5.294306 GTCAGATCCTGAATTTGTATCGCAA 59.706 40.000 0.00 0.00 42.46 4.85
398 399 5.879777 TCAGATCCTGAATTTGTATCGCAAA 59.120 36.000 0.00 0.00 41.99 3.68
399 400 6.374053 TCAGATCCTGAATTTGTATCGCAAAA 59.626 34.615 0.00 0.00 41.56 2.44
400 401 6.690098 CAGATCCTGAATTTGTATCGCAAAAG 59.310 38.462 0.00 0.00 40.91 2.27
401 402 8.152118 CAGATCCTGAATTTGTATCGCAAAAGG 61.152 40.741 0.00 0.00 40.91 3.11
407 408 4.920640 TTTGTATCGCAAAAGGGTCAAA 57.079 36.364 0.00 0.00 43.39 2.69
408 409 4.920640 TTGTATCGCAAAAGGGTCAAAA 57.079 36.364 0.00 0.00 33.53 2.44
409 410 4.231718 TGTATCGCAAAAGGGTCAAAAC 57.768 40.909 0.00 0.00 0.00 2.43
410 411 3.632604 TGTATCGCAAAAGGGTCAAAACA 59.367 39.130 0.00 0.00 0.00 2.83
411 412 2.570442 TCGCAAAAGGGTCAAAACAC 57.430 45.000 0.00 0.00 0.00 3.32
412 413 1.196200 CGCAAAAGGGTCAAAACACG 58.804 50.000 0.00 0.00 32.44 4.49
413 414 1.202200 CGCAAAAGGGTCAAAACACGA 60.202 47.619 0.00 0.00 32.44 4.35
414 415 2.732597 CGCAAAAGGGTCAAAACACGAA 60.733 45.455 0.00 0.00 32.44 3.85
415 416 3.254892 GCAAAAGGGTCAAAACACGAAA 58.745 40.909 0.00 0.00 32.44 3.46
416 417 3.680458 GCAAAAGGGTCAAAACACGAAAA 59.320 39.130 0.00 0.00 32.44 2.29
417 418 4.331443 GCAAAAGGGTCAAAACACGAAAAT 59.669 37.500 0.00 0.00 32.44 1.82
418 419 5.163804 GCAAAAGGGTCAAAACACGAAAATT 60.164 36.000 0.00 0.00 32.44 1.82
419 420 6.621812 GCAAAAGGGTCAAAACACGAAAATTT 60.622 34.615 0.00 0.00 32.44 1.82
420 421 6.415798 AAAGGGTCAAAACACGAAAATTTG 57.584 33.333 0.00 0.00 35.81 2.32
421 422 3.868661 AGGGTCAAAACACGAAAATTTGC 59.131 39.130 0.00 0.00 34.77 3.68
422 423 3.001838 GGGTCAAAACACGAAAATTTGCC 59.998 43.478 0.00 1.84 34.77 4.52
423 424 3.619038 GGTCAAAACACGAAAATTTGCCA 59.381 39.130 0.00 0.00 34.77 4.92
424 425 4.493382 GGTCAAAACACGAAAATTTGCCAC 60.493 41.667 0.00 0.00 34.77 5.01
425 426 3.619038 TCAAAACACGAAAATTTGCCACC 59.381 39.130 0.00 0.00 34.77 4.61
426 427 2.232756 AACACGAAAATTTGCCACCC 57.767 45.000 0.00 0.00 0.00 4.61
427 428 1.408969 ACACGAAAATTTGCCACCCT 58.591 45.000 0.00 0.00 0.00 4.34
428 429 1.068434 ACACGAAAATTTGCCACCCTG 59.932 47.619 0.00 0.00 0.00 4.45
429 430 1.339610 CACGAAAATTTGCCACCCTGA 59.660 47.619 0.00 0.00 0.00 3.86
430 431 1.613437 ACGAAAATTTGCCACCCTGAG 59.387 47.619 0.00 0.00 0.00 3.35
431 432 1.669795 CGAAAATTTGCCACCCTGAGC 60.670 52.381 0.00 0.00 0.00 4.26
432 433 0.318120 AAAATTTGCCACCCTGAGCG 59.682 50.000 0.00 0.00 0.00 5.03
433 434 1.535204 AAATTTGCCACCCTGAGCGG 61.535 55.000 0.00 0.00 0.00 5.52
491 492 2.065993 TACGCTTCACAGAGCAGTTC 57.934 50.000 0.00 0.00 42.83 3.01
520 522 2.289195 TGCTTTACTGTTACTGTCCCGG 60.289 50.000 0.00 0.00 0.00 5.73
521 523 2.933928 GCTTTACTGTTACTGTCCCGGG 60.934 54.545 16.85 16.85 0.00 5.73
522 524 2.014010 TTACTGTTACTGTCCCGGGT 57.986 50.000 22.86 2.78 0.00 5.28
577 583 9.571816 AGATAAGAAGATTTGAGATCCCATTTC 57.428 33.333 0.00 0.00 0.00 2.17
585 591 2.123726 ATCCCATTTCCGGCCTGC 60.124 61.111 0.00 0.00 0.00 4.85
590 596 4.028490 ATTTCCGGCCTGCGGTGA 62.028 61.111 0.00 0.00 0.00 4.02
624 817 1.298859 CTTTTTCCCCACTCCTCGCG 61.299 60.000 0.00 0.00 0.00 5.87
641 834 3.838271 GCTGCCCGACGGATCTCA 61.838 66.667 17.49 6.69 0.00 3.27
642 835 3.133014 CTGCCCGACGGATCTCAT 58.867 61.111 17.49 0.00 0.00 2.90
643 836 1.006805 CTGCCCGACGGATCTCATC 60.007 63.158 17.49 0.00 0.00 2.92
644 837 1.455773 TGCCCGACGGATCTCATCT 60.456 57.895 17.49 0.00 0.00 2.90
645 838 1.287503 GCCCGACGGATCTCATCTC 59.712 63.158 17.49 0.00 0.00 2.75
654 847 1.482278 GATCTCATCTCGCGGACAAC 58.518 55.000 6.13 0.00 0.00 3.32
691 890 3.191791 GGTGCCAGCTACGGAAAAATAAA 59.808 43.478 0.00 0.00 0.00 1.40
699 898 1.069091 ACGGAAAAATAAACGTGGGCG 60.069 47.619 0.00 0.00 44.93 6.13
893 1114 2.851045 GCCTCCCTGTCCCCAAAA 59.149 61.111 0.00 0.00 0.00 2.44
894 1115 1.304464 GCCTCCCTGTCCCCAAAAG 60.304 63.158 0.00 0.00 0.00 2.27
1126 1353 0.035630 GGTGTGCTTCCTGCTGATCT 60.036 55.000 0.00 0.00 43.37 2.75
1230 1458 1.154150 CCGAGGTACGTGTTCGGTC 60.154 63.158 21.65 1.87 46.56 4.79
1233 1461 2.126346 GGTACGTGTTCGGTCCCG 60.126 66.667 0.00 0.00 41.85 5.14
1234 1462 2.806621 GTACGTGTTCGGTCCCGC 60.807 66.667 0.00 0.00 41.85 6.13
1235 1463 3.293714 TACGTGTTCGGTCCCGCA 61.294 61.111 0.00 0.00 41.85 5.69
1286 1523 1.895231 GTGGCCTTTCGTTTCGGGT 60.895 57.895 3.32 0.00 0.00 5.28
1335 1579 4.160439 TCTGTCTGTAGGCTGTAGAAATGG 59.840 45.833 0.00 0.00 0.00 3.16
1344 1588 3.380637 GGCTGTAGAAATGGAGTAGACGA 59.619 47.826 0.00 0.00 0.00 4.20
1374 1618 0.179100 CTCCTACATGTCGGCACCAG 60.179 60.000 11.53 0.32 0.00 4.00
1399 1643 1.136446 GCGCAATCAAGCAAGCAAAAG 60.136 47.619 0.30 0.00 0.00 2.27
1420 1664 2.281761 AGCCCCAACTTCACTGCG 60.282 61.111 0.00 0.00 0.00 5.18
1465 1709 1.321474 ACTTTCGTCTACCCGTGTGA 58.679 50.000 0.00 0.00 0.00 3.58
1466 1710 1.682854 ACTTTCGTCTACCCGTGTGAA 59.317 47.619 0.00 0.00 0.00 3.18
1467 1711 2.056577 CTTTCGTCTACCCGTGTGAAC 58.943 52.381 0.00 0.00 0.00 3.18
1468 1712 1.321474 TTCGTCTACCCGTGTGAACT 58.679 50.000 0.00 0.00 0.00 3.01
1469 1713 1.321474 TCGTCTACCCGTGTGAACTT 58.679 50.000 0.00 0.00 0.00 2.66
1470 1714 1.682854 TCGTCTACCCGTGTGAACTTT 59.317 47.619 0.00 0.00 0.00 2.66
1471 1715 2.101249 TCGTCTACCCGTGTGAACTTTT 59.899 45.455 0.00 0.00 0.00 2.27
1472 1716 2.867975 CGTCTACCCGTGTGAACTTTTT 59.132 45.455 0.00 0.00 0.00 1.94
1495 1739 4.697300 TTTGCGTAGTAAAACGTGTCTC 57.303 40.909 0.00 0.00 44.64 3.36
1496 1740 3.352554 TGCGTAGTAAAACGTGTCTCA 57.647 42.857 0.00 0.00 44.64 3.27
1497 1741 3.904571 TGCGTAGTAAAACGTGTCTCAT 58.095 40.909 0.00 0.00 44.64 2.90
1498 1742 4.300803 TGCGTAGTAAAACGTGTCTCATT 58.699 39.130 0.00 0.00 44.64 2.57
1499 1743 4.746115 TGCGTAGTAAAACGTGTCTCATTT 59.254 37.500 0.00 0.00 44.64 2.32
1500 1744 5.919707 TGCGTAGTAAAACGTGTCTCATTTA 59.080 36.000 0.00 0.00 44.64 1.40
1501 1745 6.088483 TGCGTAGTAAAACGTGTCTCATTTAG 59.912 38.462 0.00 0.00 44.64 1.85
1502 1746 6.088616 GCGTAGTAAAACGTGTCTCATTTAGT 59.911 38.462 0.00 0.00 44.64 2.24
1503 1747 7.651998 CGTAGTAAAACGTGTCTCATTTAGTC 58.348 38.462 0.00 0.00 38.07 2.59
1504 1748 7.536622 CGTAGTAAAACGTGTCTCATTTAGTCT 59.463 37.037 0.00 0.00 38.07 3.24
1505 1749 9.831737 GTAGTAAAACGTGTCTCATTTAGTCTA 57.168 33.333 0.00 0.00 0.00 2.59
1506 1750 8.739649 AGTAAAACGTGTCTCATTTAGTCTAC 57.260 34.615 0.00 0.00 0.00 2.59
1507 1751 7.811713 AGTAAAACGTGTCTCATTTAGTCTACC 59.188 37.037 0.00 0.00 0.00 3.18
1508 1752 4.715527 ACGTGTCTCATTTAGTCTACCC 57.284 45.455 0.00 0.00 0.00 3.69
1509 1753 3.128242 ACGTGTCTCATTTAGTCTACCCG 59.872 47.826 0.00 0.00 0.00 5.28
1510 1754 3.128242 CGTGTCTCATTTAGTCTACCCGT 59.872 47.826 0.00 0.00 0.00 5.28
1511 1755 4.421948 GTGTCTCATTTAGTCTACCCGTG 58.578 47.826 0.00 0.00 0.00 4.94
1512 1756 4.082354 GTGTCTCATTTAGTCTACCCGTGT 60.082 45.833 0.00 0.00 0.00 4.49
1513 1757 4.082408 TGTCTCATTTAGTCTACCCGTGTG 60.082 45.833 0.00 0.00 0.00 3.82
1559 1803 6.150641 ACGAGAGCTGTTTAAGTATGAGTGTA 59.849 38.462 0.00 0.00 0.00 2.90
1584 3900 8.644374 ATTATGTGTGTGGGTAAAACTTGTAT 57.356 30.769 0.00 0.00 0.00 2.29
1599 3920 3.758554 ACTTGTATTGCTCAACCCATCAC 59.241 43.478 0.00 0.00 0.00 3.06
2251 4585 4.640201 CACAAAAATATCCGTGGTCCTCAT 59.360 41.667 0.00 0.00 0.00 2.90
2492 4849 8.854614 AGACTACTAAAATGCTTTGATCTGTT 57.145 30.769 0.00 0.00 0.00 3.16
2646 5050 8.339714 CAACACGTATAGGAAAGTTGAAGAAAA 58.660 33.333 17.09 0.00 38.80 2.29
2666 5070 7.715657 AGAAAATTGTACACATGACAACACAT 58.284 30.769 0.00 0.00 39.51 3.21
2689 5093 8.412456 ACATGTTGATTCAAATGTTCAACTACA 58.588 29.630 21.14 10.93 45.93 2.74
2726 5147 3.528121 GTTGTACGTGAATGTGACAACG 58.472 45.455 11.27 6.73 40.15 4.10
2746 5169 8.811794 ACAACGTAATATGTATATACGCTACG 57.188 34.615 21.63 21.63 37.63 3.51
2777 5201 1.307084 GGGGGCAACTAGAGGTCCT 60.307 63.158 0.00 0.00 0.00 3.85
2826 5260 0.547471 TTCCCCACTGCATGAGGAGA 60.547 55.000 0.00 0.00 36.58 3.71
2852 5286 2.125461 AGAACTGCTTTCTTTTGCGC 57.875 45.000 0.00 0.00 42.37 6.09
2853 5287 1.405105 AGAACTGCTTTCTTTTGCGCA 59.595 42.857 5.66 5.66 42.37 6.09
2854 5288 2.159254 AGAACTGCTTTCTTTTGCGCAA 60.159 40.909 21.02 21.02 42.37 4.85
2855 5289 2.292103 ACTGCTTTCTTTTGCGCAAA 57.708 40.000 30.63 30.63 31.24 3.68
2856 5290 2.195922 ACTGCTTTCTTTTGCGCAAAG 58.804 42.857 31.88 25.04 43.15 2.77
2862 5296 1.838913 TCTTTTGCGCAAAGAACTGC 58.161 45.000 31.88 0.00 46.68 4.40
2863 5297 1.405105 TCTTTTGCGCAAAGAACTGCT 59.595 42.857 31.88 0.00 46.68 4.24
2864 5298 2.159254 TCTTTTGCGCAAAGAACTGCTT 60.159 40.909 31.88 0.00 46.68 3.91
2891 5325 5.596772 TCTCATCATGTCCATTGAATTGCAT 59.403 36.000 0.00 0.00 0.00 3.96
2954 5388 1.929376 GCAACTTGCAAGCAACTGC 59.071 52.632 26.27 22.89 44.26 4.40
3256 8737 8.627208 ATTGTTTCCGCTATGAGAATAATGAT 57.373 30.769 0.00 0.00 0.00 2.45
3665 9153 0.251354 ACTCAGAGCATCAACGGCAT 59.749 50.000 0.00 0.00 37.82 4.40
3692 9180 4.813697 GGATTGCAACTATCTCTTCCTGAC 59.186 45.833 0.00 0.00 0.00 3.51
3971 9459 1.124477 AGTGCTAGGCCTCCCTATGC 61.124 60.000 9.68 6.17 42.72 3.14
4778 10293 1.517832 CCCCCTACTTCGACTGCAG 59.482 63.158 13.48 13.48 0.00 4.41
4933 10477 8.018520 CGGTAACACAATTGTTTGCTAAGATAA 58.981 33.333 8.77 0.00 43.89 1.75
4947 10494 6.583562 TGCTAAGATAAGGTAGGCTTCTTTC 58.416 40.000 7.85 6.36 0.00 2.62
4959 10506 7.182206 AGGTAGGCTTCTTTCTAATTTACAGGA 59.818 37.037 0.00 0.00 0.00 3.86
5085 10634 8.293699 ACCAAGTTTTCTGTCATTCTTACTTT 57.706 30.769 0.00 0.00 0.00 2.66
5086 10635 8.749354 ACCAAGTTTTCTGTCATTCTTACTTTT 58.251 29.630 0.00 0.00 0.00 2.27
5087 10636 9.237846 CCAAGTTTTCTGTCATTCTTACTTTTC 57.762 33.333 0.00 0.00 0.00 2.29
5088 10637 9.787532 CAAGTTTTCTGTCATTCTTACTTTTCA 57.212 29.630 0.00 0.00 0.00 2.69
5094 10643 9.950680 TTCTGTCATTCTTACTTTTCAATGAAC 57.049 29.630 0.00 0.00 37.08 3.18
5095 10644 8.282592 TCTGTCATTCTTACTTTTCAATGAACG 58.717 33.333 0.00 0.00 37.08 3.95
5096 10645 6.855914 TGTCATTCTTACTTTTCAATGAACGC 59.144 34.615 0.00 0.00 37.08 4.84
5097 10646 6.855914 GTCATTCTTACTTTTCAATGAACGCA 59.144 34.615 0.00 0.00 37.08 5.24
5098 10647 7.538678 GTCATTCTTACTTTTCAATGAACGCAT 59.461 33.333 0.00 0.00 37.08 4.73
5099 10648 8.081633 TCATTCTTACTTTTCAATGAACGCATT 58.918 29.630 0.00 0.00 45.33 3.56
5100 10649 8.702438 CATTCTTACTTTTCAATGAACGCATTT 58.298 29.630 0.00 0.00 41.87 2.32
5101 10650 7.621832 TCTTACTTTTCAATGAACGCATTTG 57.378 32.000 0.00 0.00 41.87 2.32
5102 10651 7.199766 TCTTACTTTTCAATGAACGCATTTGT 58.800 30.769 0.00 0.00 41.87 2.83
5103 10652 7.704472 TCTTACTTTTCAATGAACGCATTTGTT 59.296 29.630 0.00 0.00 41.87 2.83
5104 10653 6.272698 ACTTTTCAATGAACGCATTTGTTC 57.727 33.333 0.00 0.00 41.87 3.18
5105 10654 6.042143 ACTTTTCAATGAACGCATTTGTTCT 58.958 32.000 0.00 0.00 46.59 3.01
5106 10655 6.534793 ACTTTTCAATGAACGCATTTGTTCTT 59.465 30.769 0.00 0.00 46.59 2.52
5107 10656 7.704472 ACTTTTCAATGAACGCATTTGTTCTTA 59.296 29.630 0.00 0.00 46.59 2.10
5108 10657 6.984740 TTCAATGAACGCATTTGTTCTTAC 57.015 33.333 7.97 0.00 46.59 2.34
5109 10658 6.066054 TCAATGAACGCATTTGTTCTTACA 57.934 33.333 7.97 0.00 46.59 2.41
5110 10659 6.676950 TCAATGAACGCATTTGTTCTTACAT 58.323 32.000 7.97 0.00 46.59 2.29
5111 10660 7.144661 TCAATGAACGCATTTGTTCTTACATT 58.855 30.769 7.97 0.00 46.59 2.71
5112 10661 7.651304 TCAATGAACGCATTTGTTCTTACATTT 59.349 29.630 7.97 0.00 46.59 2.32
5113 10662 6.984740 TGAACGCATTTGTTCTTACATTTC 57.015 33.333 7.97 0.00 46.59 2.17
5114 10663 5.623264 TGAACGCATTTGTTCTTACATTTCG 59.377 36.000 7.97 0.00 46.59 3.46
5115 10664 4.472286 ACGCATTTGTTCTTACATTTCGG 58.528 39.130 0.00 0.00 33.44 4.30
5116 10665 4.023536 ACGCATTTGTTCTTACATTTCGGT 60.024 37.500 0.00 0.00 33.44 4.69
5117 10666 4.553429 CGCATTTGTTCTTACATTTCGGTC 59.447 41.667 0.00 0.00 33.44 4.79
5118 10667 5.457140 GCATTTGTTCTTACATTTCGGTCA 58.543 37.500 0.00 0.00 33.44 4.02
5119 10668 5.569059 GCATTTGTTCTTACATTTCGGTCAG 59.431 40.000 0.00 0.00 33.44 3.51
5120 10669 6.668323 CATTTGTTCTTACATTTCGGTCAGT 58.332 36.000 0.00 0.00 33.44 3.41
5121 10670 5.917541 TTGTTCTTACATTTCGGTCAGTC 57.082 39.130 0.00 0.00 33.44 3.51
5122 10671 5.209818 TGTTCTTACATTTCGGTCAGTCT 57.790 39.130 0.00 0.00 0.00 3.24
5123 10672 5.607477 TGTTCTTACATTTCGGTCAGTCTT 58.393 37.500 0.00 0.00 0.00 3.01
5124 10673 5.694910 TGTTCTTACATTTCGGTCAGTCTTC 59.305 40.000 0.00 0.00 0.00 2.87
5125 10674 5.723672 TCTTACATTTCGGTCAGTCTTCT 57.276 39.130 0.00 0.00 0.00 2.85
5126 10675 5.710984 TCTTACATTTCGGTCAGTCTTCTC 58.289 41.667 0.00 0.00 0.00 2.87
5127 10676 5.477291 TCTTACATTTCGGTCAGTCTTCTCT 59.523 40.000 0.00 0.00 0.00 3.10
5128 10677 4.608948 ACATTTCGGTCAGTCTTCTCTT 57.391 40.909 0.00 0.00 0.00 2.85
5129 10678 4.310769 ACATTTCGGTCAGTCTTCTCTTG 58.689 43.478 0.00 0.00 0.00 3.02
5130 10679 4.202264 ACATTTCGGTCAGTCTTCTCTTGT 60.202 41.667 0.00 0.00 0.00 3.16
5131 10680 5.010719 ACATTTCGGTCAGTCTTCTCTTGTA 59.989 40.000 0.00 0.00 0.00 2.41
5132 10681 5.723672 TTTCGGTCAGTCTTCTCTTGTAT 57.276 39.130 0.00 0.00 0.00 2.29
5133 10682 5.723672 TTCGGTCAGTCTTCTCTTGTATT 57.276 39.130 0.00 0.00 0.00 1.89
5134 10683 5.060662 TCGGTCAGTCTTCTCTTGTATTG 57.939 43.478 0.00 0.00 0.00 1.90
5135 10684 3.614616 CGGTCAGTCTTCTCTTGTATTGC 59.385 47.826 0.00 0.00 0.00 3.56
5136 10685 4.569943 GGTCAGTCTTCTCTTGTATTGCA 58.430 43.478 0.00 0.00 0.00 4.08
5137 10686 4.997395 GGTCAGTCTTCTCTTGTATTGCAA 59.003 41.667 0.00 0.00 35.50 4.08
5138 10687 5.645497 GGTCAGTCTTCTCTTGTATTGCAAT 59.355 40.000 17.56 17.56 36.36 3.56
5179 10728 5.067283 ACATGTTGGTGTTAGTTGAGTTTCC 59.933 40.000 0.00 0.00 0.00 3.13
5186 10735 4.213482 GTGTTAGTTGAGTTTCCGAGCAAT 59.787 41.667 0.00 0.00 0.00 3.56
5188 10737 3.126001 AGTTGAGTTTCCGAGCAATGA 57.874 42.857 0.00 0.00 0.00 2.57
5201 10768 3.731565 CGAGCAATGATCAAATTTCGCCA 60.732 43.478 0.00 0.00 0.00 5.69
5210 10777 0.965363 AAATTTCGCCACCGCTGGAT 60.965 50.000 0.00 0.00 40.55 3.41
5245 10969 4.245251 ACCACCACTTTGAAAGTTAGGT 57.755 40.909 8.03 10.80 40.46 3.08
5311 11036 1.234821 TGGGTCAGTCGATTTTGTGC 58.765 50.000 0.00 0.00 0.00 4.57
5324 11049 0.672401 TTTGTGCCCGTCCGATTCTC 60.672 55.000 0.00 0.00 0.00 2.87
5428 11159 2.154462 CAGTCGAATTGCTTCTTGGGT 58.846 47.619 0.00 0.00 0.00 4.51
5446 11177 2.357952 GGGTTCGTTTTTGCTCTTCTGT 59.642 45.455 0.00 0.00 0.00 3.41
5454 11185 4.355543 TTTTGCTCTTCTGTGTTGTGTC 57.644 40.909 0.00 0.00 0.00 3.67
5467 11199 5.949735 TGTGTTGTGTCTTTCTTTTTCCTC 58.050 37.500 0.00 0.00 0.00 3.71
5774 11532 6.112927 ACCAATGCCACTATTCATTTGTTT 57.887 33.333 0.00 0.00 31.15 2.83
5776 11534 7.675062 ACCAATGCCACTATTCATTTGTTTTA 58.325 30.769 0.00 0.00 31.15 1.52
5777 11535 7.818930 ACCAATGCCACTATTCATTTGTTTTAG 59.181 33.333 0.00 0.00 31.15 1.85
5778 11536 8.034215 CCAATGCCACTATTCATTTGTTTTAGA 58.966 33.333 0.00 0.00 31.15 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.095228 TTTTGCGGATCGAGATGGCC 61.095 55.000 0.00 0.00 0.00 5.36
1 2 0.732571 TTTTTGCGGATCGAGATGGC 59.267 50.000 0.00 0.00 0.00 4.40
2 3 1.267532 CGTTTTTGCGGATCGAGATGG 60.268 52.381 0.00 0.00 0.00 3.51
3 4 2.077155 CGTTTTTGCGGATCGAGATG 57.923 50.000 0.00 0.00 0.00 2.90
13 14 1.511147 CGTTTCTTCACCGTTTTTGCG 59.489 47.619 0.00 0.00 0.00 4.85
14 15 1.849829 CCGTTTCTTCACCGTTTTTGC 59.150 47.619 0.00 0.00 0.00 3.68
15 16 2.849473 CACCGTTTCTTCACCGTTTTTG 59.151 45.455 0.00 0.00 0.00 2.44
16 17 2.748532 TCACCGTTTCTTCACCGTTTTT 59.251 40.909 0.00 0.00 0.00 1.94
17 18 2.358015 TCACCGTTTCTTCACCGTTTT 58.642 42.857 0.00 0.00 0.00 2.43
18 19 2.027003 TCACCGTTTCTTCACCGTTT 57.973 45.000 0.00 0.00 0.00 3.60
19 20 1.937899 CTTCACCGTTTCTTCACCGTT 59.062 47.619 0.00 0.00 0.00 4.44
20 21 1.137479 TCTTCACCGTTTCTTCACCGT 59.863 47.619 0.00 0.00 0.00 4.83
21 22 1.860676 TCTTCACCGTTTCTTCACCG 58.139 50.000 0.00 0.00 0.00 4.94
22 23 2.742589 GGATCTTCACCGTTTCTTCACC 59.257 50.000 0.00 0.00 0.00 4.02
23 24 2.412089 CGGATCTTCACCGTTTCTTCAC 59.588 50.000 0.00 0.00 44.57 3.18
24 25 2.683968 CGGATCTTCACCGTTTCTTCA 58.316 47.619 0.00 0.00 44.57 3.02
33 34 3.231298 CCCCCTCGGATCTTCACC 58.769 66.667 0.00 0.00 0.00 4.02
47 48 3.237741 CATCTCCTCCGCTCCCCC 61.238 72.222 0.00 0.00 0.00 5.40
48 49 2.123251 TCATCTCCTCCGCTCCCC 60.123 66.667 0.00 0.00 0.00 4.81
49 50 1.152652 TCTCATCTCCTCCGCTCCC 60.153 63.158 0.00 0.00 0.00 4.30
50 51 0.179004 TCTCTCATCTCCTCCGCTCC 60.179 60.000 0.00 0.00 0.00 4.70
51 52 1.238439 CTCTCTCATCTCCTCCGCTC 58.762 60.000 0.00 0.00 0.00 5.03
52 53 0.178992 CCTCTCTCATCTCCTCCGCT 60.179 60.000 0.00 0.00 0.00 5.52
53 54 1.178534 CCCTCTCTCATCTCCTCCGC 61.179 65.000 0.00 0.00 0.00 5.54
54 55 0.476338 TCCCTCTCTCATCTCCTCCG 59.524 60.000 0.00 0.00 0.00 4.63
55 56 1.780309 TCTCCCTCTCTCATCTCCTCC 59.220 57.143 0.00 0.00 0.00 4.30
56 57 2.711009 TCTCTCCCTCTCTCATCTCCTC 59.289 54.545 0.00 0.00 0.00 3.71
57 58 2.713167 CTCTCTCCCTCTCTCATCTCCT 59.287 54.545 0.00 0.00 0.00 3.69
58 59 2.224867 CCTCTCTCCCTCTCTCATCTCC 60.225 59.091 0.00 0.00 0.00 3.71
59 60 2.224867 CCCTCTCTCCCTCTCTCATCTC 60.225 59.091 0.00 0.00 0.00 2.75
60 61 1.782752 CCCTCTCTCCCTCTCTCATCT 59.217 57.143 0.00 0.00 0.00 2.90
61 62 1.203050 CCCCTCTCTCCCTCTCTCATC 60.203 61.905 0.00 0.00 0.00 2.92
62 63 0.859760 CCCCTCTCTCCCTCTCTCAT 59.140 60.000 0.00 0.00 0.00 2.90
63 64 1.943730 GCCCCTCTCTCCCTCTCTCA 61.944 65.000 0.00 0.00 0.00 3.27
64 65 1.152546 GCCCCTCTCTCCCTCTCTC 60.153 68.421 0.00 0.00 0.00 3.20
65 66 3.024217 GCCCCTCTCTCCCTCTCT 58.976 66.667 0.00 0.00 0.00 3.10
66 67 2.520741 CGCCCCTCTCTCCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
67 68 3.024356 TCGCCCCTCTCTCCCTCT 61.024 66.667 0.00 0.00 0.00 3.69
68 69 2.520741 CTCGCCCCTCTCTCCCTC 60.521 72.222 0.00 0.00 0.00 4.30
69 70 2.937285 AACTCGCCCCTCTCTCCCT 61.937 63.158 0.00 0.00 0.00 4.20
70 71 2.364448 AACTCGCCCCTCTCTCCC 60.364 66.667 0.00 0.00 0.00 4.30
71 72 2.726351 CCAACTCGCCCCTCTCTCC 61.726 68.421 0.00 0.00 0.00 3.71
72 73 2.726351 CCCAACTCGCCCCTCTCTC 61.726 68.421 0.00 0.00 0.00 3.20
73 74 2.685380 CCCAACTCGCCCCTCTCT 60.685 66.667 0.00 0.00 0.00 3.10
74 75 3.787001 CCCCAACTCGCCCCTCTC 61.787 72.222 0.00 0.00 0.00 3.20
75 76 3.864983 TTCCCCAACTCGCCCCTCT 62.865 63.158 0.00 0.00 0.00 3.69
76 77 3.327404 TTCCCCAACTCGCCCCTC 61.327 66.667 0.00 0.00 0.00 4.30
77 78 3.330720 CTTCCCCAACTCGCCCCT 61.331 66.667 0.00 0.00 0.00 4.79
78 79 2.420466 TTTCTTCCCCAACTCGCCCC 62.420 60.000 0.00 0.00 0.00 5.80
79 80 0.538746 TTTTCTTCCCCAACTCGCCC 60.539 55.000 0.00 0.00 0.00 6.13
80 81 0.881796 CTTTTCTTCCCCAACTCGCC 59.118 55.000 0.00 0.00 0.00 5.54
81 82 1.892209 TCTTTTCTTCCCCAACTCGC 58.108 50.000 0.00 0.00 0.00 5.03
82 83 3.674997 TCATCTTTTCTTCCCCAACTCG 58.325 45.455 0.00 0.00 0.00 4.18
83 84 5.536538 AGTTTCATCTTTTCTTCCCCAACTC 59.463 40.000 0.00 0.00 0.00 3.01
84 85 5.302823 CAGTTTCATCTTTTCTTCCCCAACT 59.697 40.000 0.00 0.00 0.00 3.16
85 86 5.532557 CAGTTTCATCTTTTCTTCCCCAAC 58.467 41.667 0.00 0.00 0.00 3.77
86 87 4.039124 GCAGTTTCATCTTTTCTTCCCCAA 59.961 41.667 0.00 0.00 0.00 4.12
87 88 3.573967 GCAGTTTCATCTTTTCTTCCCCA 59.426 43.478 0.00 0.00 0.00 4.96
88 89 3.056536 GGCAGTTTCATCTTTTCTTCCCC 60.057 47.826 0.00 0.00 0.00 4.81
89 90 3.366374 CGGCAGTTTCATCTTTTCTTCCC 60.366 47.826 0.00 0.00 0.00 3.97
90 91 3.502211 TCGGCAGTTTCATCTTTTCTTCC 59.498 43.478 0.00 0.00 0.00 3.46
91 92 4.467735 GTCGGCAGTTTCATCTTTTCTTC 58.532 43.478 0.00 0.00 0.00 2.87
92 93 3.058914 CGTCGGCAGTTTCATCTTTTCTT 60.059 43.478 0.00 0.00 0.00 2.52
93 94 2.480419 CGTCGGCAGTTTCATCTTTTCT 59.520 45.455 0.00 0.00 0.00 2.52
94 95 2.412847 CCGTCGGCAGTTTCATCTTTTC 60.413 50.000 0.00 0.00 0.00 2.29
95 96 1.535462 CCGTCGGCAGTTTCATCTTTT 59.465 47.619 0.00 0.00 0.00 2.27
96 97 1.156736 CCGTCGGCAGTTTCATCTTT 58.843 50.000 0.00 0.00 0.00 2.52
97 98 0.320374 TCCGTCGGCAGTTTCATCTT 59.680 50.000 6.34 0.00 0.00 2.40
98 99 0.108615 CTCCGTCGGCAGTTTCATCT 60.109 55.000 6.34 0.00 0.00 2.90
99 100 1.084370 CCTCCGTCGGCAGTTTCATC 61.084 60.000 6.34 0.00 0.00 2.92
100 101 1.079127 CCTCCGTCGGCAGTTTCAT 60.079 57.895 6.34 0.00 0.00 2.57
101 102 2.342279 CCTCCGTCGGCAGTTTCA 59.658 61.111 6.34 0.00 0.00 2.69
102 103 2.434359 CCCTCCGTCGGCAGTTTC 60.434 66.667 6.34 0.00 0.00 2.78
103 104 2.920912 TCCCTCCGTCGGCAGTTT 60.921 61.111 6.34 0.00 0.00 2.66
104 105 3.382832 CTCCCTCCGTCGGCAGTT 61.383 66.667 6.34 0.00 0.00 3.16
111 112 4.862823 CCTCCCCCTCCCTCCGTC 62.863 77.778 0.00 0.00 0.00 4.79
115 116 4.825679 CACCCCTCCCCCTCCCTC 62.826 77.778 0.00 0.00 0.00 4.30
118 119 4.825679 CTCCACCCCTCCCCCTCC 62.826 77.778 0.00 0.00 0.00 4.30
119 120 3.695825 TCTCCACCCCTCCCCCTC 61.696 72.222 0.00 0.00 0.00 4.30
120 121 3.700350 CTCTCCACCCCTCCCCCT 61.700 72.222 0.00 0.00 0.00 4.79
121 122 3.041297 ATCTCTCCACCCCTCCCCC 62.041 68.421 0.00 0.00 0.00 5.40
122 123 1.768077 CATCTCTCCACCCCTCCCC 60.768 68.421 0.00 0.00 0.00 4.81
123 124 1.768077 CCATCTCTCCACCCCTCCC 60.768 68.421 0.00 0.00 0.00 4.30
124 125 1.768077 CCCATCTCTCCACCCCTCC 60.768 68.421 0.00 0.00 0.00 4.30
125 126 2.447714 GCCCATCTCTCCACCCCTC 61.448 68.421 0.00 0.00 0.00 4.30
126 127 2.367512 GCCCATCTCTCCACCCCT 60.368 66.667 0.00 0.00 0.00 4.79
127 128 2.692368 TGCCCATCTCTCCACCCC 60.692 66.667 0.00 0.00 0.00 4.95
128 129 2.750657 CCTGCCCATCTCTCCACCC 61.751 68.421 0.00 0.00 0.00 4.61
129 130 2.750657 CCCTGCCCATCTCTCCACC 61.751 68.421 0.00 0.00 0.00 4.61
130 131 2.750657 CCCCTGCCCATCTCTCCAC 61.751 68.421 0.00 0.00 0.00 4.02
131 132 2.367377 CCCCTGCCCATCTCTCCA 60.367 66.667 0.00 0.00 0.00 3.86
132 133 3.883549 GCCCCTGCCCATCTCTCC 61.884 72.222 0.00 0.00 0.00 3.71
133 134 4.247380 CGCCCCTGCCCATCTCTC 62.247 72.222 0.00 0.00 0.00 3.20
155 156 0.179137 GCAGTTATTTCGCCTTGGGC 60.179 55.000 0.00 0.00 46.75 5.36
156 157 0.455815 GGCAGTTATTTCGCCTTGGG 59.544 55.000 0.00 0.00 42.78 4.12
157 158 0.455815 GGGCAGTTATTTCGCCTTGG 59.544 55.000 0.00 0.00 45.50 3.61
158 159 0.098728 CGGGCAGTTATTTCGCCTTG 59.901 55.000 0.00 0.00 45.50 3.61
159 160 1.029947 CCGGGCAGTTATTTCGCCTT 61.030 55.000 0.00 0.00 45.50 4.35
160 161 1.451387 CCGGGCAGTTATTTCGCCT 60.451 57.895 0.00 0.00 45.50 5.52
161 162 1.450669 TCCGGGCAGTTATTTCGCC 60.451 57.895 0.00 0.00 45.47 5.54
162 163 1.712018 GGTCCGGGCAGTTATTTCGC 61.712 60.000 9.07 0.00 0.00 4.70
163 164 1.093496 GGGTCCGGGCAGTTATTTCG 61.093 60.000 9.07 0.00 0.00 3.46
164 165 0.255033 AGGGTCCGGGCAGTTATTTC 59.745 55.000 9.07 0.00 0.00 2.17
165 166 1.211212 GTAGGGTCCGGGCAGTTATTT 59.789 52.381 9.07 0.00 0.00 1.40
166 167 0.835276 GTAGGGTCCGGGCAGTTATT 59.165 55.000 9.07 0.00 0.00 1.40
167 168 1.052694 GGTAGGGTCCGGGCAGTTAT 61.053 60.000 9.07 0.00 0.00 1.89
168 169 1.686800 GGTAGGGTCCGGGCAGTTA 60.687 63.158 9.07 0.00 0.00 2.24
169 170 3.007323 GGTAGGGTCCGGGCAGTT 61.007 66.667 9.07 0.00 0.00 3.16
189 190 3.854669 CTACCGCCAGAGCCCCTG 61.855 72.222 0.00 0.00 42.55 4.45
193 194 2.029307 CTAACCCTACCGCCAGAGCC 62.029 65.000 0.00 0.00 34.57 4.70
194 195 1.041447 TCTAACCCTACCGCCAGAGC 61.041 60.000 0.00 0.00 0.00 4.09
195 196 0.745468 GTCTAACCCTACCGCCAGAG 59.255 60.000 0.00 0.00 0.00 3.35
196 197 0.040058 TGTCTAACCCTACCGCCAGA 59.960 55.000 0.00 0.00 0.00 3.86
197 198 0.460311 CTGTCTAACCCTACCGCCAG 59.540 60.000 0.00 0.00 0.00 4.85
198 199 0.974010 CCTGTCTAACCCTACCGCCA 60.974 60.000 0.00 0.00 0.00 5.69
199 200 1.821258 CCTGTCTAACCCTACCGCC 59.179 63.158 0.00 0.00 0.00 6.13
200 201 1.143401 GCCTGTCTAACCCTACCGC 59.857 63.158 0.00 0.00 0.00 5.68
201 202 1.680207 GTAGCCTGTCTAACCCTACCG 59.320 57.143 0.00 0.00 0.00 4.02
202 203 2.037901 GGTAGCCTGTCTAACCCTACC 58.962 57.143 0.00 0.00 40.66 3.18
203 204 1.680207 CGGTAGCCTGTCTAACCCTAC 59.320 57.143 0.00 0.00 31.10 3.18
204 205 2.025863 GCGGTAGCCTGTCTAACCCTA 61.026 57.143 0.00 0.00 37.42 3.53
205 206 1.328430 GCGGTAGCCTGTCTAACCCT 61.328 60.000 0.00 0.00 37.42 4.34
206 207 1.143401 GCGGTAGCCTGTCTAACCC 59.857 63.158 0.00 0.00 37.42 4.11
207 208 4.829588 GCGGTAGCCTGTCTAACC 57.170 61.111 0.00 0.00 37.42 2.85
217 218 2.017559 CTAGGTCACCTGGCGGTAGC 62.018 65.000 6.61 1.53 43.24 3.58
218 219 2.116383 CTAGGTCACCTGGCGGTAG 58.884 63.158 6.61 0.00 43.24 3.18
219 220 4.349682 CTAGGTCACCTGGCGGTA 57.650 61.111 6.61 0.00 43.24 4.02
232 233 2.201022 ATCGCACCCTACCGCTAGG 61.201 63.158 0.00 0.00 45.13 3.02
233 234 1.007271 CATCGCACCCTACCGCTAG 60.007 63.158 0.00 0.00 0.00 3.42
234 235 2.495409 CCATCGCACCCTACCGCTA 61.495 63.158 0.00 0.00 0.00 4.26
235 236 3.849951 CCATCGCACCCTACCGCT 61.850 66.667 0.00 0.00 0.00 5.52
236 237 3.792053 CTCCATCGCACCCTACCGC 62.792 68.421 0.00 0.00 0.00 5.68
237 238 2.076622 CTCTCCATCGCACCCTACCG 62.077 65.000 0.00 0.00 0.00 4.02
238 239 1.742768 CTCTCCATCGCACCCTACC 59.257 63.158 0.00 0.00 0.00 3.18
239 240 1.742768 CCTCTCCATCGCACCCTAC 59.257 63.158 0.00 0.00 0.00 3.18
240 241 1.457643 CCCTCTCCATCGCACCCTA 60.458 63.158 0.00 0.00 0.00 3.53
241 242 2.765807 CCCTCTCCATCGCACCCT 60.766 66.667 0.00 0.00 0.00 4.34
242 243 2.764128 TCCCTCTCCATCGCACCC 60.764 66.667 0.00 0.00 0.00 4.61
243 244 2.501610 GTCCCTCTCCATCGCACC 59.498 66.667 0.00 0.00 0.00 5.01
244 245 2.105128 CGTCCCTCTCCATCGCAC 59.895 66.667 0.00 0.00 0.00 5.34
245 246 3.147595 CCGTCCCTCTCCATCGCA 61.148 66.667 0.00 0.00 0.00 5.10
246 247 4.593864 GCCGTCCCTCTCCATCGC 62.594 72.222 0.00 0.00 0.00 4.58
247 248 4.271816 CGCCGTCCCTCTCCATCG 62.272 72.222 0.00 0.00 0.00 3.84
248 249 3.917760 CCGCCGTCCCTCTCCATC 61.918 72.222 0.00 0.00 0.00 3.51
249 250 4.458829 TCCGCCGTCCCTCTCCAT 62.459 66.667 0.00 0.00 0.00 3.41
276 277 2.537401 GGTAGTAATCCACGTCAGCAC 58.463 52.381 0.00 0.00 0.00 4.40
277 278 1.479323 GGGTAGTAATCCACGTCAGCA 59.521 52.381 0.00 0.00 0.00 4.41
278 279 1.755380 AGGGTAGTAATCCACGTCAGC 59.245 52.381 0.00 0.00 0.00 4.26
279 280 3.317430 GGTAGGGTAGTAATCCACGTCAG 59.683 52.174 0.00 0.00 0.00 3.51
280 281 3.290710 GGTAGGGTAGTAATCCACGTCA 58.709 50.000 0.00 0.00 0.00 4.35
281 282 2.291741 CGGTAGGGTAGTAATCCACGTC 59.708 54.545 0.00 0.00 0.00 4.34
282 283 2.092429 TCGGTAGGGTAGTAATCCACGT 60.092 50.000 0.00 0.00 0.00 4.49
283 284 2.291741 GTCGGTAGGGTAGTAATCCACG 59.708 54.545 0.00 0.00 0.00 4.94
284 285 3.290710 TGTCGGTAGGGTAGTAATCCAC 58.709 50.000 0.00 0.00 0.00 4.02
285 286 3.559069 CTGTCGGTAGGGTAGTAATCCA 58.441 50.000 0.00 0.00 0.00 3.41
286 287 2.889678 CCTGTCGGTAGGGTAGTAATCC 59.110 54.545 0.00 0.00 34.06 3.01
287 288 3.560105 ACCTGTCGGTAGGGTAGTAATC 58.440 50.000 10.06 0.00 43.29 1.75
288 289 3.560105 GACCTGTCGGTAGGGTAGTAAT 58.440 50.000 10.06 0.00 45.73 1.89
289 290 2.357154 GGACCTGTCGGTAGGGTAGTAA 60.357 54.545 10.06 0.00 45.73 2.24
290 291 1.212935 GGACCTGTCGGTAGGGTAGTA 59.787 57.143 10.06 0.00 45.73 1.82
291 292 0.033699 GGACCTGTCGGTAGGGTAGT 60.034 60.000 10.06 0.00 45.73 2.73
292 293 0.754587 GGGACCTGTCGGTAGGGTAG 60.755 65.000 10.06 0.00 45.73 3.18
293 294 1.307647 GGGACCTGTCGGTAGGGTA 59.692 63.158 10.06 0.00 45.73 3.69
294 295 2.038490 GGGACCTGTCGGTAGGGT 59.962 66.667 10.06 1.15 45.73 4.34
315 316 0.535797 AGGTTTAGACAGGCTACCGC 59.464 55.000 0.00 0.00 31.65 5.68
316 317 2.100418 GGTAGGTTTAGACAGGCTACCG 59.900 54.545 0.00 0.00 32.35 4.02
317 318 2.100418 CGGTAGGTTTAGACAGGCTACC 59.900 54.545 0.00 0.00 36.05 3.18
318 319 2.480932 GCGGTAGGTTTAGACAGGCTAC 60.481 54.545 0.00 0.00 0.00 3.58
319 320 1.753073 GCGGTAGGTTTAGACAGGCTA 59.247 52.381 0.00 0.00 0.00 3.93
320 321 0.535797 GCGGTAGGTTTAGACAGGCT 59.464 55.000 0.00 0.00 0.00 4.58
321 322 0.461516 GGCGGTAGGTTTAGACAGGC 60.462 60.000 0.00 0.00 0.00 4.85
322 323 0.899720 TGGCGGTAGGTTTAGACAGG 59.100 55.000 0.00 0.00 0.00 4.00
323 324 1.134788 CCTGGCGGTAGGTTTAGACAG 60.135 57.143 0.00 0.00 32.99 3.51
324 325 0.899720 CCTGGCGGTAGGTTTAGACA 59.100 55.000 0.00 0.00 32.99 3.41
325 326 0.177373 CCCTGGCGGTAGGTTTAGAC 59.823 60.000 0.00 0.00 36.02 2.59
326 327 0.252375 ACCCTGGCGGTAGGTTTAGA 60.252 55.000 0.00 0.00 45.97 2.10
327 328 2.293877 ACCCTGGCGGTAGGTTTAG 58.706 57.895 0.00 0.00 45.97 1.85
328 329 4.565179 ACCCTGGCGGTAGGTTTA 57.435 55.556 0.00 0.00 45.97 2.01
336 337 2.440247 GGGATTTGACCCTGGCGG 60.440 66.667 0.00 0.00 45.90 6.13
342 343 4.250464 GGAAATTTTTCGGGATTTGACCC 58.750 43.478 0.00 0.00 45.92 4.46
343 344 4.888917 TGGAAATTTTTCGGGATTTGACC 58.111 39.130 0.00 0.00 38.06 4.02
344 345 6.481976 AGTTTGGAAATTTTTCGGGATTTGAC 59.518 34.615 0.00 0.00 38.06 3.18
345 346 6.481644 CAGTTTGGAAATTTTTCGGGATTTGA 59.518 34.615 0.00 0.00 38.06 2.69
346 347 6.293353 CCAGTTTGGAAATTTTTCGGGATTTG 60.293 38.462 0.00 0.00 40.96 2.32
347 348 5.762711 CCAGTTTGGAAATTTTTCGGGATTT 59.237 36.000 0.00 0.00 40.96 2.17
348 349 5.304778 CCAGTTTGGAAATTTTTCGGGATT 58.695 37.500 0.00 0.00 40.96 3.01
349 350 4.262851 CCCAGTTTGGAAATTTTTCGGGAT 60.263 41.667 5.85 0.00 40.96 3.85
350 351 3.070302 CCCAGTTTGGAAATTTTTCGGGA 59.930 43.478 5.85 0.00 40.96 5.14
351 352 3.398406 CCCAGTTTGGAAATTTTTCGGG 58.602 45.455 0.00 0.00 40.96 5.14
352 353 3.181459 ACCCCAGTTTGGAAATTTTTCGG 60.181 43.478 0.00 0.00 40.96 4.30
353 354 4.055360 GACCCCAGTTTGGAAATTTTTCG 58.945 43.478 0.00 0.00 40.96 3.46
354 355 5.029807 TGACCCCAGTTTGGAAATTTTTC 57.970 39.130 0.00 0.00 40.96 2.29
355 356 4.719273 TCTGACCCCAGTTTGGAAATTTTT 59.281 37.500 0.00 0.00 40.96 1.94
356 357 4.294347 TCTGACCCCAGTTTGGAAATTTT 58.706 39.130 0.00 0.00 40.96 1.82
357 358 3.922375 TCTGACCCCAGTTTGGAAATTT 58.078 40.909 0.00 0.00 40.96 1.82
358 359 3.611025 TCTGACCCCAGTTTGGAAATT 57.389 42.857 0.00 0.00 40.96 1.82
359 360 3.564352 GGATCTGACCCCAGTTTGGAAAT 60.564 47.826 0.00 0.00 40.96 2.17
360 361 2.225017 GGATCTGACCCCAGTTTGGAAA 60.225 50.000 0.00 0.00 40.96 3.13
361 362 1.354368 GGATCTGACCCCAGTTTGGAA 59.646 52.381 0.00 0.00 40.96 3.53
362 363 0.991920 GGATCTGACCCCAGTTTGGA 59.008 55.000 0.00 0.00 40.96 3.53
363 364 0.995024 AGGATCTGACCCCAGTTTGG 59.005 55.000 0.00 0.00 41.16 3.28
364 365 1.630369 TCAGGATCTGACCCCAGTTTG 59.370 52.381 0.00 0.00 41.16 2.93
365 366 2.044793 TCAGGATCTGACCCCAGTTT 57.955 50.000 0.00 0.00 41.16 2.66
366 367 2.044793 TTCAGGATCTGACCCCAGTT 57.955 50.000 0.00 0.00 40.46 3.16
367 368 2.277008 ATTCAGGATCTGACCCCAGT 57.723 50.000 0.00 0.00 40.46 4.00
368 369 3.285484 CAAATTCAGGATCTGACCCCAG 58.715 50.000 0.00 0.00 40.46 4.45
369 370 2.649312 ACAAATTCAGGATCTGACCCCA 59.351 45.455 0.00 0.00 40.46 4.96
370 371 3.372440 ACAAATTCAGGATCTGACCCC 57.628 47.619 0.00 0.00 40.46 4.95
371 372 4.752101 CGATACAAATTCAGGATCTGACCC 59.248 45.833 0.00 0.00 40.46 4.46
372 373 4.212214 GCGATACAAATTCAGGATCTGACC 59.788 45.833 0.00 0.00 40.46 4.02
373 374 4.811024 TGCGATACAAATTCAGGATCTGAC 59.189 41.667 0.00 0.00 40.46 3.51
374 375 5.022282 TGCGATACAAATTCAGGATCTGA 57.978 39.130 0.00 0.00 38.87 3.27
375 376 5.739752 TTGCGATACAAATTCAGGATCTG 57.260 39.130 0.00 0.00 34.56 2.90
386 387 4.920640 TTTGACCCTTTTGCGATACAAA 57.079 36.364 0.00 0.00 46.51 2.83
387 388 4.098044 TGTTTTGACCCTTTTGCGATACAA 59.902 37.500 0.00 0.00 36.13 2.41
388 389 3.632604 TGTTTTGACCCTTTTGCGATACA 59.367 39.130 0.00 0.00 0.00 2.29
389 390 3.978855 GTGTTTTGACCCTTTTGCGATAC 59.021 43.478 0.00 0.00 0.00 2.24
390 391 3.304123 CGTGTTTTGACCCTTTTGCGATA 60.304 43.478 0.00 0.00 0.00 2.92
391 392 2.542824 CGTGTTTTGACCCTTTTGCGAT 60.543 45.455 0.00 0.00 0.00 4.58
392 393 1.202200 CGTGTTTTGACCCTTTTGCGA 60.202 47.619 0.00 0.00 0.00 5.10
393 394 1.196200 CGTGTTTTGACCCTTTTGCG 58.804 50.000 0.00 0.00 0.00 4.85
394 395 2.570442 TCGTGTTTTGACCCTTTTGC 57.430 45.000 0.00 0.00 0.00 3.68
395 396 6.415798 AATTTTCGTGTTTTGACCCTTTTG 57.584 33.333 0.00 0.00 0.00 2.44
396 397 6.621812 GCAAATTTTCGTGTTTTGACCCTTTT 60.622 34.615 0.00 0.00 33.24 2.27
397 398 5.163804 GCAAATTTTCGTGTTTTGACCCTTT 60.164 36.000 0.00 0.00 33.24 3.11
398 399 4.331443 GCAAATTTTCGTGTTTTGACCCTT 59.669 37.500 0.00 0.00 33.24 3.95
399 400 3.868661 GCAAATTTTCGTGTTTTGACCCT 59.131 39.130 0.00 0.00 33.24 4.34
400 401 3.001838 GGCAAATTTTCGTGTTTTGACCC 59.998 43.478 0.00 0.00 33.22 4.46
401 402 3.619038 TGGCAAATTTTCGTGTTTTGACC 59.381 39.130 0.00 0.00 37.53 4.02
402 403 4.493382 GGTGGCAAATTTTCGTGTTTTGAC 60.493 41.667 0.00 0.00 38.56 3.18
403 404 3.619038 GGTGGCAAATTTTCGTGTTTTGA 59.381 39.130 0.00 0.00 33.24 2.69
404 405 3.242576 GGGTGGCAAATTTTCGTGTTTTG 60.243 43.478 0.00 0.00 34.30 2.44
405 406 2.939756 GGGTGGCAAATTTTCGTGTTTT 59.060 40.909 0.00 0.00 0.00 2.43
406 407 2.169561 AGGGTGGCAAATTTTCGTGTTT 59.830 40.909 0.00 0.00 0.00 2.83
407 408 1.760029 AGGGTGGCAAATTTTCGTGTT 59.240 42.857 0.00 0.00 0.00 3.32
408 409 1.068434 CAGGGTGGCAAATTTTCGTGT 59.932 47.619 0.00 0.00 0.00 4.49
409 410 1.339610 TCAGGGTGGCAAATTTTCGTG 59.660 47.619 0.00 0.00 0.00 4.35
410 411 1.613437 CTCAGGGTGGCAAATTTTCGT 59.387 47.619 0.00 0.00 0.00 3.85
411 412 1.669795 GCTCAGGGTGGCAAATTTTCG 60.670 52.381 0.00 0.00 0.00 3.46
412 413 1.669795 CGCTCAGGGTGGCAAATTTTC 60.670 52.381 0.00 0.00 0.00 2.29
413 414 0.318120 CGCTCAGGGTGGCAAATTTT 59.682 50.000 0.00 0.00 0.00 1.82
414 415 1.535204 CCGCTCAGGGTGGCAAATTT 61.535 55.000 0.00 0.00 38.88 1.82
415 416 1.978617 CCGCTCAGGGTGGCAAATT 60.979 57.895 0.00 0.00 38.88 1.82
416 417 2.361610 CCGCTCAGGGTGGCAAAT 60.362 61.111 0.00 0.00 38.88 2.32
422 423 0.535102 AGTTTTGACCGCTCAGGGTG 60.535 55.000 0.00 0.00 46.96 4.61
423 424 0.182775 AAGTTTTGACCGCTCAGGGT 59.817 50.000 0.00 0.00 46.96 4.34
424 425 0.593128 CAAGTTTTGACCGCTCAGGG 59.407 55.000 0.00 0.00 46.96 4.45
491 492 2.405892 AACAGTAAAGCAAAGCAGCG 57.594 45.000 0.00 0.00 40.15 5.18
520 522 1.152963 AACAGCACAGACCACCACC 60.153 57.895 0.00 0.00 0.00 4.61
521 523 0.179045 AGAACAGCACAGACCACCAC 60.179 55.000 0.00 0.00 0.00 4.16
522 524 0.546122 AAGAACAGCACAGACCACCA 59.454 50.000 0.00 0.00 0.00 4.17
590 596 1.435346 AAAAGTACCCTGCTGCCCCT 61.435 55.000 0.00 0.00 0.00 4.79
597 603 1.203013 AGTGGGGAAAAAGTACCCTGC 60.203 52.381 0.00 0.00 44.97 4.85
600 606 1.709115 AGGAGTGGGGAAAAAGTACCC 59.291 52.381 0.00 0.00 44.94 3.69
601 607 2.614734 CGAGGAGTGGGGAAAAAGTACC 60.615 54.545 0.00 0.00 0.00 3.34
624 817 3.157217 ATGAGATCCGTCGGGCAGC 62.157 63.158 12.29 0.00 0.00 5.25
699 898 3.910490 TTTTGCCTGCACCGCACC 61.910 61.111 3.20 0.00 35.56 5.01
779 980 1.157276 AGTGAGTGAGGGTGAGGCT 59.843 57.895 0.00 0.00 0.00 4.58
890 1111 2.161609 CCGTGCTCCGCTTTAATCTTTT 59.838 45.455 0.00 0.00 34.38 2.27
893 1114 1.090052 GCCGTGCTCCGCTTTAATCT 61.090 55.000 0.00 0.00 34.38 2.40
894 1115 1.352056 GCCGTGCTCCGCTTTAATC 59.648 57.895 0.00 0.00 34.38 1.75
1102 1329 1.672356 GCAGGAAGCACACCGACAT 60.672 57.895 0.00 0.00 44.79 3.06
1230 1458 2.510906 CAAGGGGGTAGATGCGGG 59.489 66.667 0.00 0.00 0.00 6.13
1233 1461 2.902343 GCGCAAGGGGGTAGATGC 60.902 66.667 0.30 0.00 38.28 3.91
1335 1579 3.553904 AGGGTGGTTCTATCGTCTACTC 58.446 50.000 0.00 0.00 0.00 2.59
1344 1588 3.967987 GACATGTAGGAGGGTGGTTCTAT 59.032 47.826 0.00 0.00 0.00 1.98
1374 1618 1.937196 CTTGCTTGATTGCGCGCAAC 61.937 55.000 44.93 34.95 38.88 4.17
1380 1624 2.129607 ACTTTTGCTTGCTTGATTGCG 58.870 42.857 0.00 0.00 35.36 4.85
1384 1628 2.288640 GCTGGACTTTTGCTTGCTTGAT 60.289 45.455 0.00 0.00 0.00 2.57
1399 1643 0.890996 CAGTGAAGTTGGGGCTGGAC 60.891 60.000 0.00 0.00 0.00 4.02
1420 1664 3.942439 GGTGGGGCCGCTATCCTC 61.942 72.222 21.80 4.93 0.00 3.71
1472 1716 5.063186 TGAGACACGTTTTACTACGCAAAAA 59.937 36.000 0.00 0.00 45.06 1.94
1473 1717 4.565962 TGAGACACGTTTTACTACGCAAAA 59.434 37.500 0.00 0.00 45.06 2.44
1474 1718 4.111198 TGAGACACGTTTTACTACGCAAA 58.889 39.130 0.00 0.00 45.06 3.68
1475 1719 3.704512 TGAGACACGTTTTACTACGCAA 58.295 40.909 0.00 0.00 45.06 4.85
1476 1720 3.352554 TGAGACACGTTTTACTACGCA 57.647 42.857 0.00 0.00 45.06 5.24
1477 1721 4.898328 AATGAGACACGTTTTACTACGC 57.102 40.909 0.00 0.00 45.06 4.42
1478 1722 7.536622 AGACTAAATGAGACACGTTTTACTACG 59.463 37.037 0.00 0.00 46.52 3.51
1479 1723 8.739649 AGACTAAATGAGACACGTTTTACTAC 57.260 34.615 0.00 0.00 38.47 2.73
1480 1724 9.831737 GTAGACTAAATGAGACACGTTTTACTA 57.168 33.333 0.00 0.00 38.47 1.82
1481 1725 7.811713 GGTAGACTAAATGAGACACGTTTTACT 59.188 37.037 0.00 0.00 38.47 2.24
1482 1726 7.062722 GGGTAGACTAAATGAGACACGTTTTAC 59.937 40.741 0.00 0.00 38.47 2.01
1483 1727 7.092716 GGGTAGACTAAATGAGACACGTTTTA 58.907 38.462 0.00 0.00 38.47 1.52
1484 1728 5.930569 GGGTAGACTAAATGAGACACGTTTT 59.069 40.000 0.00 0.00 38.47 2.43
1485 1729 5.476614 GGGTAGACTAAATGAGACACGTTT 58.523 41.667 0.00 0.00 40.32 3.60
1486 1730 4.380233 CGGGTAGACTAAATGAGACACGTT 60.380 45.833 0.00 0.00 0.00 3.99
1487 1731 3.128242 CGGGTAGACTAAATGAGACACGT 59.872 47.826 0.00 0.00 0.00 4.49
1488 1732 3.128242 ACGGGTAGACTAAATGAGACACG 59.872 47.826 0.00 0.00 0.00 4.49
1489 1733 4.082354 ACACGGGTAGACTAAATGAGACAC 60.082 45.833 0.00 0.00 0.00 3.67
1490 1734 4.082408 CACACGGGTAGACTAAATGAGACA 60.082 45.833 0.00 0.00 0.00 3.41
1491 1735 4.157289 TCACACGGGTAGACTAAATGAGAC 59.843 45.833 0.00 0.00 0.00 3.36
1492 1736 4.338012 TCACACGGGTAGACTAAATGAGA 58.662 43.478 0.00 0.00 0.00 3.27
1493 1737 4.713824 TCACACGGGTAGACTAAATGAG 57.286 45.455 0.00 0.00 0.00 2.90
1494 1738 4.525487 AGTTCACACGGGTAGACTAAATGA 59.475 41.667 3.62 0.00 0.00 2.57
1495 1739 4.817517 AGTTCACACGGGTAGACTAAATG 58.182 43.478 3.62 0.00 0.00 2.32
1496 1740 4.081807 GGAGTTCACACGGGTAGACTAAAT 60.082 45.833 5.34 0.00 0.00 1.40
1497 1741 3.256631 GGAGTTCACACGGGTAGACTAAA 59.743 47.826 5.34 0.00 0.00 1.85
1498 1742 2.821969 GGAGTTCACACGGGTAGACTAA 59.178 50.000 5.34 0.00 0.00 2.24
1499 1743 2.440409 GGAGTTCACACGGGTAGACTA 58.560 52.381 5.34 0.00 0.00 2.59
1500 1744 1.254954 GGAGTTCACACGGGTAGACT 58.745 55.000 5.04 5.04 0.00 3.24
1501 1745 0.245813 GGGAGTTCACACGGGTAGAC 59.754 60.000 0.00 0.00 0.00 2.59
1502 1746 0.178955 TGGGAGTTCACACGGGTAGA 60.179 55.000 0.00 0.00 0.00 2.59
1503 1747 0.682852 TTGGGAGTTCACACGGGTAG 59.317 55.000 0.00 0.00 0.00 3.18
1504 1748 0.682852 CTTGGGAGTTCACACGGGTA 59.317 55.000 0.00 0.00 0.00 3.69
1505 1749 1.450211 CTTGGGAGTTCACACGGGT 59.550 57.895 0.00 0.00 0.00 5.28
1506 1750 1.302511 CCTTGGGAGTTCACACGGG 60.303 63.158 0.00 0.00 35.26 5.28
1507 1751 1.966451 GCCTTGGGAGTTCACACGG 60.966 63.158 2.70 2.70 41.22 4.94
1508 1752 0.951040 GAGCCTTGGGAGTTCACACG 60.951 60.000 0.00 0.00 0.00 4.49
1509 1753 0.606673 GGAGCCTTGGGAGTTCACAC 60.607 60.000 0.00 0.00 0.00 3.82
1510 1754 1.059584 TGGAGCCTTGGGAGTTCACA 61.060 55.000 0.00 0.00 0.00 3.58
1511 1755 0.110486 TTGGAGCCTTGGGAGTTCAC 59.890 55.000 0.00 0.00 0.00 3.18
1512 1756 0.401738 CTTGGAGCCTTGGGAGTTCA 59.598 55.000 0.00 0.00 0.00 3.18
1513 1757 0.322906 CCTTGGAGCCTTGGGAGTTC 60.323 60.000 0.00 0.00 0.00 3.01
1559 1803 6.969993 ACAAGTTTTACCCACACACATAAT 57.030 33.333 0.00 0.00 0.00 1.28
1584 3900 3.719268 ATACTGTGATGGGTTGAGCAA 57.281 42.857 0.00 0.00 0.00 3.91
1626 3947 5.449304 CCCTATTTTCGGCGATAATTCAAC 58.551 41.667 26.05 0.00 0.00 3.18
1629 3950 4.079665 GCCCTATTTTCGGCGATAATTC 57.920 45.455 26.05 12.40 34.94 2.17
1928 4253 6.210584 CCCACAAAAGAATTACCTACCACAAT 59.789 38.462 0.00 0.00 0.00 2.71
1940 4265 6.894682 ACCACAATTTACCCACAAAAGAATT 58.105 32.000 0.00 0.00 0.00 2.17
1944 4269 6.642707 TCTACCACAATTTACCCACAAAAG 57.357 37.500 0.00 0.00 0.00 2.27
2137 4471 1.355066 CTCCTTGAGAAAGCGGCGTC 61.355 60.000 9.37 0.13 0.00 5.19
2191 4525 4.713824 ATGTATCGAGAACTTGAACCGA 57.286 40.909 0.00 0.00 0.00 4.69
2746 5169 2.636412 GCCCCCGGTTTTCTTCAGC 61.636 63.158 0.00 0.00 0.00 4.26
2804 5228 1.993653 CTCATGCAGTGGGGAAGGA 59.006 57.895 0.00 0.00 0.00 3.36
2855 5289 5.163281 ACATGATGAGAAGAAGCAGTTCT 57.837 39.130 0.00 0.00 45.56 3.01
2856 5290 4.332268 GGACATGATGAGAAGAAGCAGTTC 59.668 45.833 0.00 0.00 0.00 3.01
2857 5291 4.260170 GGACATGATGAGAAGAAGCAGTT 58.740 43.478 0.00 0.00 0.00 3.16
2858 5292 3.262660 TGGACATGATGAGAAGAAGCAGT 59.737 43.478 0.00 0.00 0.00 4.40
2859 5293 3.870274 TGGACATGATGAGAAGAAGCAG 58.130 45.455 0.00 0.00 0.00 4.24
2860 5294 3.986996 TGGACATGATGAGAAGAAGCA 57.013 42.857 0.00 0.00 0.00 3.91
2861 5295 4.880120 TCAATGGACATGATGAGAAGAAGC 59.120 41.667 0.00 0.00 0.00 3.86
2862 5296 6.997239 TTCAATGGACATGATGAGAAGAAG 57.003 37.500 0.00 0.00 0.00 2.85
2863 5297 7.629866 GCAATTCAATGGACATGATGAGAAGAA 60.630 37.037 0.00 0.00 0.00 2.52
2864 5298 6.183360 GCAATTCAATGGACATGATGAGAAGA 60.183 38.462 0.00 0.00 0.00 2.87
2891 5325 2.042433 AGTACAAATGGGCTGCCCTTTA 59.958 45.455 35.80 18.79 45.70 1.85
2948 5382 3.181501 TGTTCTTTTCCTCGTTGCAGTTG 60.182 43.478 0.00 0.00 0.00 3.16
2954 5388 3.691049 TGCTTGTTCTTTTCCTCGTTG 57.309 42.857 0.00 0.00 0.00 4.10
3075 7692 4.282195 ACAAGAGAAGACTGACCGAAAGAT 59.718 41.667 0.00 0.00 0.00 2.40
3219 8691 6.325919 AGCGGAAACAATCACTTGAATTAA 57.674 33.333 0.00 0.00 36.20 1.40
3394 8882 7.927092 AGATAAATCATCAGGCATATCATCTCG 59.073 37.037 0.00 0.00 35.96 4.04
3665 9153 5.540337 AGGAAGAGATAGTTGCAATCCGATA 59.460 40.000 0.59 0.00 0.00 2.92
3692 9180 1.904865 CCCATCCCGGCATGGATTG 60.905 63.158 26.96 5.26 45.79 2.67
3971 9459 0.815734 ACCGTCAAGATGGAGGTACG 59.184 55.000 14.98 0.00 39.90 3.67
4505 9999 1.141254 TCGGCTGGTAAACTTTCACCA 59.859 47.619 0.00 0.00 42.54 4.17
4933 10477 7.182206 TCCTGTAAATTAGAAAGAAGCCTACCT 59.818 37.037 0.00 0.00 0.00 3.08
4985 10534 6.605995 TCTGATCAAATGCATGAGAGGAAAAT 59.394 34.615 0.00 0.00 31.76 1.82
5085 10634 6.499172 TGTAAGAACAAATGCGTTCATTGAA 58.501 32.000 9.48 0.00 46.32 2.69
5086 10635 6.066054 TGTAAGAACAAATGCGTTCATTGA 57.934 33.333 9.48 0.00 46.32 2.57
5087 10636 6.932901 ATGTAAGAACAAATGCGTTCATTG 57.067 33.333 9.48 0.00 46.32 2.82
5088 10637 7.148983 CGAAATGTAAGAACAAATGCGTTCATT 60.149 33.333 9.48 0.00 46.32 2.57
5089 10638 6.305399 CGAAATGTAAGAACAAATGCGTTCAT 59.695 34.615 9.48 1.56 46.32 2.57
5090 10639 5.623264 CGAAATGTAAGAACAAATGCGTTCA 59.377 36.000 9.48 0.00 46.32 3.18
5091 10640 5.059221 CCGAAATGTAAGAACAAATGCGTTC 59.941 40.000 0.00 0.00 44.63 3.95
5092 10641 4.915085 CCGAAATGTAAGAACAAATGCGTT 59.085 37.500 0.00 0.00 39.58 4.84
5093 10642 4.023536 ACCGAAATGTAAGAACAAATGCGT 60.024 37.500 0.00 0.00 39.58 5.24
5094 10643 4.472286 ACCGAAATGTAAGAACAAATGCG 58.528 39.130 0.00 0.00 39.58 4.73
5095 10644 5.457140 TGACCGAAATGTAAGAACAAATGC 58.543 37.500 0.00 0.00 39.58 3.56
5096 10645 6.668323 ACTGACCGAAATGTAAGAACAAATG 58.332 36.000 0.00 0.00 39.58 2.32
5097 10646 6.710744 AGACTGACCGAAATGTAAGAACAAAT 59.289 34.615 0.00 0.00 39.58 2.32
5098 10647 6.053005 AGACTGACCGAAATGTAAGAACAAA 58.947 36.000 0.00 0.00 39.58 2.83
5099 10648 5.607477 AGACTGACCGAAATGTAAGAACAA 58.393 37.500 0.00 0.00 39.58 2.83
5100 10649 5.209818 AGACTGACCGAAATGTAAGAACA 57.790 39.130 0.00 0.00 40.69 3.18
5101 10650 5.927115 AGAAGACTGACCGAAATGTAAGAAC 59.073 40.000 0.00 0.00 0.00 3.01
5102 10651 6.015350 AGAGAAGACTGACCGAAATGTAAGAA 60.015 38.462 0.00 0.00 0.00 2.52
5103 10652 5.477291 AGAGAAGACTGACCGAAATGTAAGA 59.523 40.000 0.00 0.00 0.00 2.10
5104 10653 5.715070 AGAGAAGACTGACCGAAATGTAAG 58.285 41.667 0.00 0.00 0.00 2.34
5105 10654 5.723672 AGAGAAGACTGACCGAAATGTAA 57.276 39.130 0.00 0.00 0.00 2.41
5106 10655 5.010719 ACAAGAGAAGACTGACCGAAATGTA 59.989 40.000 0.00 0.00 0.00 2.29
5107 10656 4.202264 ACAAGAGAAGACTGACCGAAATGT 60.202 41.667 0.00 0.00 0.00 2.71
5108 10657 4.310769 ACAAGAGAAGACTGACCGAAATG 58.689 43.478 0.00 0.00 0.00 2.32
5109 10658 4.608948 ACAAGAGAAGACTGACCGAAAT 57.391 40.909 0.00 0.00 0.00 2.17
5110 10659 5.723672 ATACAAGAGAAGACTGACCGAAA 57.276 39.130 0.00 0.00 0.00 3.46
5111 10660 5.470368 CAATACAAGAGAAGACTGACCGAA 58.530 41.667 0.00 0.00 0.00 4.30
5112 10661 4.618460 GCAATACAAGAGAAGACTGACCGA 60.618 45.833 0.00 0.00 0.00 4.69
5113 10662 3.614616 GCAATACAAGAGAAGACTGACCG 59.385 47.826 0.00 0.00 0.00 4.79
5114 10663 4.569943 TGCAATACAAGAGAAGACTGACC 58.430 43.478 0.00 0.00 0.00 4.02
5115 10664 6.402983 CCATTGCAATACAAGAGAAGACTGAC 60.403 42.308 12.53 0.00 42.87 3.51
5116 10665 5.645067 CCATTGCAATACAAGAGAAGACTGA 59.355 40.000 12.53 0.00 42.87 3.41
5117 10666 5.163683 CCCATTGCAATACAAGAGAAGACTG 60.164 44.000 12.53 0.00 42.87 3.51
5118 10667 4.946157 CCCATTGCAATACAAGAGAAGACT 59.054 41.667 12.53 0.00 42.87 3.24
5119 10668 4.096984 CCCCATTGCAATACAAGAGAAGAC 59.903 45.833 12.53 0.00 42.87 3.01
5120 10669 4.272489 CCCCATTGCAATACAAGAGAAGA 58.728 43.478 12.53 0.00 42.87 2.87
5121 10670 3.382546 CCCCCATTGCAATACAAGAGAAG 59.617 47.826 12.53 0.00 42.87 2.85
5122 10671 3.364549 CCCCCATTGCAATACAAGAGAA 58.635 45.455 12.53 0.00 42.87 2.87
5123 10672 2.949963 GCCCCCATTGCAATACAAGAGA 60.950 50.000 12.53 0.00 42.87 3.10
5124 10673 1.410153 GCCCCCATTGCAATACAAGAG 59.590 52.381 12.53 0.00 42.87 2.85
5125 10674 1.272928 TGCCCCCATTGCAATACAAGA 60.273 47.619 12.53 0.00 42.87 3.02
5126 10675 1.193323 TGCCCCCATTGCAATACAAG 58.807 50.000 12.53 3.07 42.87 3.16
5127 10676 1.876849 ATGCCCCCATTGCAATACAA 58.123 45.000 12.53 0.00 42.92 2.41
5128 10677 1.876849 AATGCCCCCATTGCAATACA 58.123 45.000 12.53 6.21 42.92 2.29
5136 10685 0.769873 TGCAAAACAATGCCCCCATT 59.230 45.000 0.00 0.00 45.83 3.16
5137 10686 0.036590 GTGCAAAACAATGCCCCCAT 59.963 50.000 0.00 0.00 45.83 4.00
5138 10687 1.340399 TGTGCAAAACAATGCCCCCA 61.340 50.000 0.00 0.00 45.83 4.96
5179 10728 2.785477 GGCGAAATTTGATCATTGCTCG 59.215 45.455 0.00 4.90 0.00 5.03
5186 10735 0.170116 GCGGTGGCGAAATTTGATCA 59.830 50.000 0.00 0.00 0.00 2.92
5188 10737 0.171007 CAGCGGTGGCGAAATTTGAT 59.829 50.000 6.74 0.00 46.35 2.57
5201 10768 2.722094 TCTGCAATTTAATCCAGCGGT 58.278 42.857 0.00 0.00 33.47 5.68
5210 10777 5.606348 AGTGGTGGTTTTCTGCAATTTAA 57.394 34.783 0.00 0.00 0.00 1.52
5245 10969 9.314321 GACATATAGCTAAAGTGTTTCTGCTAA 57.686 33.333 0.00 0.00 37.90 3.09
5288 11012 4.795962 GCACAAAATCGACTGACCCAAAAT 60.796 41.667 0.00 0.00 0.00 1.82
5311 11036 0.535335 TCAAAGGAGAATCGGACGGG 59.465 55.000 0.00 0.00 34.37 5.28
5324 11049 3.996150 AAACAGCACACATCTCAAAGG 57.004 42.857 0.00 0.00 0.00 3.11
5366 11097 0.257328 TTCCACACAGCCCAACTCAA 59.743 50.000 0.00 0.00 0.00 3.02
5428 11159 4.083003 ACAACACAGAAGAGCAAAAACGAA 60.083 37.500 0.00 0.00 0.00 3.85
5446 11177 6.834168 AAGAGGAAAAAGAAAGACACAACA 57.166 33.333 0.00 0.00 0.00 3.33
5454 11185 9.658799 AAAGGAAAGAAAAGAGGAAAAAGAAAG 57.341 29.630 0.00 0.00 0.00 2.62
5494 11226 3.993081 TCAGCCAAAACACACAAAAACAG 59.007 39.130 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.